FastQCFastQC Report
Wed 15 Apr 2015
20150414_trimmed_2112_lane1_TTAGGC_L001_R1_002.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename20150414_trimmed_2112_lane1_TTAGGC_L001_R1_002.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8034025
Sequences flagged as poor quality0
Sequence length1-101
%GC35

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AATCATA815950.055.7080275
TCATAAA867700.052.8257
CACGGGC8750.052.6733
ATCATAA883350.052.345216
TAAATCA789700.051.3080143
AAATCAT869150.050.4432874
CATAAAC913000.050.2513928
CACACGG9250.049.791911
AGAGCAC104600.048.22904294-95
ATAAATC868400.046.272172
ACACGGG10100.045.622862
GAGCACA60000.041.72288594-95
CCAACGG7900.041.3392332
AATAAAT989650.040.5613941
ACCGGGC5850.039.7662052
AACCGGG6650.039.672871
ATAAACA1183700.038.9813589
ATACGGC8000.038.5989045
TACGGCG8650.035.185226
CCGGGCA6800.034.2178963