FastQCFastQC Report
Thu 21 May 2015
20150521_trimmed_2212_lane2_400ppm_GCCAAT.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename20150521_trimmed_2212_lane2_400ppm_GCCAAT.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79218039
Sequences flagged as poor quality0
Sequence length1-51
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTAGATC19450.013.426496545
CTAGATC19600.09.60269745
TAAGATC26600.07.87168545
CTTAGAT10900.07.554415745
CGACGCT30850.07.31124933
GACGCTC31900.06.94978484
CCTAGAT13200.06.772811445
CAAGATC76500.05.90471745
CGCTCTT34400.05.7744996
ATAGATC27800.05.754709745
CACGACG44600.05.71147541
TCAGATC34350.05.6162545
CTAAGAT15251.8189894E-125.553822545
CTTCCGA27700.05.32181610
ACAGATC49150.05.26536545
ACGCTCT39050.05.24356565
ACTAGAT19250.05.13307845
GCTCTTC41600.05.1005737