108A_Female_Mix_GGCTAC_L004_R2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	108A_Female_Mix_GGCTAC_L004_R2_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	45936627
Filtered Sequences	5770327
Sequence length	76
%GC	42

Per base quality graph

Per Sequence quality graph

Per base GC content graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCCTGATTCAACATCGAGGTGCCAATCCCACTAGCCAATACGTTCTCTAC	98111	0.213579024859618	No Hit
CGCCTACTGAGTAATACTAACCTCTGTGTATAAAAAAACTTTCAGGTGTA	60600	0.1319208743820046	No Hit
CCGACATTGTCGATCATAGGAGAAGTTACGCCGGGGATAACAGGCTAATC	53752	0.11701338019441436	No Hit
CCTGATTCAACATCGAGGTGCCAATCCCACTAGCCAATACGTTCTCTACT	46157	0.10047973265429348	No Hit

Kmer graph

Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
GGGGG	4398355	3.2311199	9.327377	41
AAAAA	17102400	2.4934537	5.016061	60
CTGGG	3342705	1.7842594	6.249743	1
CAACA	6357875	1.7287563	5.2170243	9
CGGGG	2349735	1.7059125	5.1611614	1
GCCTG	3171920	1.673236	5.3586555	61
CTGGA	4224235	1.6317149	6.7376723	1
CTCCA	4187850	1.5799288	7.215759	1
CTGGT	3982515	1.5629297	5.8797174	1
CTCCT	3920035	1.5025264	5.8046837	1
CCCCG	2131000	1.4932979	6.912564	70
GGGAA	3824145	1.4711936	5.222519	22
CCCTG	2672785	1.3933945	6.792742	1
TCCCC	2631690	1.3558756	5.41851	69
TTCAA	6504455	1.3367972	5.0067267	7
CTGGC	2511905	1.3250681	5.2450705	1
CCCAC	2586155	1.3114566	5.2259765	27
CGAGG	2340675	1.2297455	5.544513	15
GGTGC	2232195	1.1914946	5.587123	18
CCGGC	1621180	1.1495272	6.5669837	72
CCCGG	1580635	1.1207781	6.673343	71
CTCGG	2049225	1.0809975	5.6379	1
CGCCT	2071805	1.0800873	5.336912	1
GTGCC	1889410	0.99669254	5.000833	19