Transposable Element	Lineage-specific DMLs 	Developmentally different DMLs		Transposable Element	All CpGs	
DNA_En-Spm	0	4		DNA_En-Spm	2834	
DNA_hAT-Blackja	2	0		DNA_hAT-Blackja	286	
DNA_hAT-Ac	0	1		DNA_hAT-Ac	1930	
DNA_hAT-hATw	3	3		DNA_hAT-hATw	1264	
DNA_Helitron	2	0		DNA_Helitron	1006	
DNA_IS	1	0		DNA_IS	1579	
DNA_IS4EU	2	1		DNA_IS4EU	10257	
DNA_Kolobok	3	0		DNA_Kolobok	2810	
DNA_Kolobok-Hyd	3	0		DNA_Kolobok-Hyd	832	
DNA_Kolobok-IS4	1	0		DNA_Kolobok-IS4	2794	
DNA_MuDR	3	1		DNA_MuDR	4480	
DNA_NOF	1	0		DNA_NOF	739	
DNA_Sola	0	1		DNA_Sola	6521	
DNA_TcMar-Tc2	0	1		DNA_TcMar-Tc2	3429	
DNA_TcMar-Marin	1	0		DNA_TcMar-Marin	6880	
LINE_CR1-L2	0	1		LINE_CR1-L2	9901	
LINE_L1	2	3		LINE_L1	17973	
LINE_L1-Tx1	5	1		LINE_L1-Tx1	30803	
LINE_L2	0	9		LINE_L2	32261	
LINE_R2-Hero	0	2		LINE_R2-Hero	2508	
LINE_RTE-X	0	1		LINE_RTE-X	56175	
LTR_Copia	1	3		LTR_Copia	3310	
LTR_DIRS	4	5		LTR_DIRS	20656	
LTR_Gypsy	20	16		LTR_Gypsy	132084	
LTR_Gypsy-Cigr	5	6		LTR_Gypsy-Cigr	19891	
LTR_Ngaro	0	4		LTR_Ngaro	25073	
LTR_Pao	16	10		LTR_Pao	38903	
RC_Helitron	14	1		RC_Helitron	9607	
Tandem_Repeat	22	13		Tandem_Repeat	235190	
Total	111	87		DNA	104	
				DNA_Academ	2854	
				DNA_Chapaev	312	
				DNA_Chapaev-Cha	28	
				DNA_Crypton	5217	
				DNA_Harbinger	14127	
				DNA_hAT	3081	
				DNA_hAT-Charlie	63	
				DNA_hAT-hAT5	25	
				DNA_hAT-hATx	34	
				DNA_hAT-Hobo	23	
				DNA_hAT-Restles	7	
				DNA_hAT-Tag1	32	
				DNA_hAT-Tip100	5341	
				DNA_hAT-Tip100?	35	
				DNA_hAT-Tol2	10	
				DNA_Maverick	18792	
				DNA_Merlin	1177	
				DNA_NOF?	230	
				DNA_Novosib	10	
				DNA_P	1422	
				DNA_PiggyBac	4238	
				DNA_TcMar	12	
				DNA_TcMar-Ant1	137	
				DNA_TcMar-Fot1	3606	
				DNA_TcMar-IS630	15	
				DNA_TcMar-IS885	9	
				DNA_TcMar-ISRm1	410	
				DNA_TcMar-m44	456	
				DNA_TcMar-Pogo	1660	
				DNA_TcMar-Stowa	33	
				DNA_TcMar-Tc1	23935	
				DNA_TcMar-Tigge	328	
				DNA_Transib	4	
				DNA_Zator	1173	
				DNA?_Crypton?	21	
				LINE_CR1	14609	
				LINE_Dong-R4	36	
				LINE_DRE	113	
				LINE_I	1667	
				LINE_I-Nimb	344	
				LINE_Jockey	1668	
				LINE_L1?	10	
				LINE_L2-Hydra	614	
				LINE_LOA	94	
				LINE_Odin	8	
				LINE_Penelope	17175	
				LINE_Proto2	2392	
				LINE_R1	156	
				LINE_R2	1103	
				LINE_Rex-Babar	482	
				LINE_RTE	92	
				LINE_RTE-BovB	14138	
				LINE_RTE-RTE	338	
				LINE_Tad1?	106	
				LINE_Telomeric	36	
				LINE_Zorro	17	
				LTR_Caulimoviru	89	
				LTR_Delta	44	
				LTR_DIRS?	593	
				LTR_ERV-Foamy	62	
				LTR_ERV-Lenti	3	
				LTR_ERV1	1640	
				LTR_ERVK	205	
				LTR_ERVL	48	
				LTR_Foamy	97	
				LTR_Gypsy-Gmr1	205	
				LTR_Gypsy-Troyk	3352	
				LTR_Gypsy?	61	
				LTR_Lenti	27	
				Unknown	7	
				Total	832568