##FastQC 0.10.1 >>Basic Statistics pass #Measure Value Filename 3291_5903_10009_H94MGADXX_V_CF26_TTAGGC_R1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 19319381 Filtered Sequences 0 Sequence length 101 %GC 36 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.885487376640068 34.0 31.0 34.0 30.0 34.0 2 31.972230217935035 34.0 31.0 34.0 30.0 34.0 3 32.07303608743986 34.0 31.0 34.0 30.0 34.0 4 35.40686976461616 37.0 37.0 37.0 33.0 37.0 5 35.1939834407738 37.0 35.0 37.0 33.0 37.0 6 34.92136419898753 37.0 35.0 37.0 32.0 37.0 7 35.01633706587183 37.0 35.0 37.0 32.0 37.0 8 35.02933121925594 37.0 35.0 37.0 32.0 37.0 9 36.71778050238773 39.0 38.0 39.0 33.0 39.0 10-14 36.93368962494192 39.4 38.2 39.4 33.0 39.4 15-19 38.051988466918274 41.0 39.0 41.0 33.0 41.0 20-24 38.008335401636316 41.0 39.0 41.0 33.0 41.0 25-29 37.86999256342633 41.0 38.8 41.0 33.0 41.0 30-34 37.69288300696591 40.6 38.0 41.0 32.2 41.0 35-39 37.55080241960133 40.0 38.0 41.0 32.0 41.0 40-44 37.40219138491032 40.0 38.0 41.0 32.0 41.0 45-49 37.11117724734556 40.0 37.8 41.0 31.0 41.0 50-54 36.79727908466633 40.0 37.0 41.0 30.4 41.0 55-59 36.442589232025604 39.8 36.2 41.0 30.0 41.0 60-64 36.03181387643838 39.0 35.4 41.0 29.8 41.0 65-69 35.37933885148804 37.8 35.0 40.6 29.0 41.0 70-74 34.64364735081315 36.6 35.0 39.4 28.8 41.0 75-79 33.78459388528027 35.6 34.2 38.2 28.0 40.2 80-84 33.014309423267754 35.0 34.0 36.8 27.4 39.0 85-89 32.38136192872846 35.0 34.0 36.0 26.0 37.0 90-94 31.92573464957288 35.0 34.0 35.2 25.6 36.2 95-99 31.570728358222244 35.0 34.0 35.0 25.0 36.0 100-101 31.101792702364534 35.0 33.5 35.0 22.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 324629.0 3 87684.0 4 50853.0 5 34888.0 6 31055.0 7 30229.0 8 31106.0 9 32983.0 10 35581.0 11 37840.0 12 38419.0 13 38814.0 14 39107.0 15 39386.0 16 39679.0 17 39486.0 18 40144.0 19 42206.0 20 42745.0 21 44971.0 22 48948.0 23 56499.0 24 68368.0 25 82981.0 26 100869.0 27 124092.0 28 154446.0 29 169967.0 30 201766.0 31 249429.0 32 314657.0 33 416036.0 34 585207.0 35 879476.0 36 1623886.0 37 3917262.0 38 6418546.0 39 2784675.0 40 20466.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.40929219863848 21.649461048854462 15.042695390016297 36.898551362490764 2 18.70248617559158 21.68529506295401 35.42753395174058 24.18468480971383 3 16.93188684442996 23.422350623679133 31.80925891440023 27.83650361749067 4 20.2335116480117 27.492858412477634 27.208044037317418 25.065585902193245 5 23.964818337578457 31.703907786337314 26.356110312137844 17.975163563946385 6 19.49598126502788 37.532543668862495 26.593745273227036 16.37772979288259 7 15.542109558682359 26.687104830377063 42.08477966055897 15.6860059503816 8 15.472416242523474 29.110683331324065 34.68266673823001 20.734233687922448 9 16.974646131481034 27.266630047230787 37.25664339900155 18.50208042228664 10-14 18.348689584346385 33.46655169606132 30.81663084164462 17.368127877947668 15-19 18.218221944625622 32.08932690582861 31.50874192673977 18.183709222805998 20-24 18.03208841558429 32.306778933167024 32.10032859023272 17.56080406101596 25-29 17.68537090177728 32.78239382800033 30.624809021656706 18.907426248565685 30-34 17.42114150554848 32.54758136978698 32.349650823942625 17.68162630072191 35-39 18.53310933904829 33.059987990573035 30.90384419288541 17.50305847749326 40-44 17.675086095974915 32.08874306756909 32.5822992119749 17.653871624481095 45-49 18.92035943008771 31.972998130080843 32.00517481622156 17.101467623609885 50-54 17.477488524898526 31.497647373057113 33.4166797172023 17.608184384842062 55-59 17.49972354061046 32.00954020690665 32.94621184789246 17.54452440459044 60-64 18.029670712838623 32.82104959062888 31.297926396018266 17.851353300514234 65-69 17.08633823272517 32.31666819254681 32.97700796621249 17.61998560851553 70-74 17.16783765391462 33.781581747752796 31.768221288210015 17.28235931012257 75-79 17.577219666383094 32.673391464686446 31.46048566777038 18.288903201160085 80-84 17.7604133318943 32.55895035440079 32.201581134561316 17.479055179143593 85-89 17.78083112514218 32.00497813789551 33.08158540913551 17.132605327826788 90-94 17.67295980934643 31.425852414701122 33.03813200797994 17.863055767972504 95-99 18.006335530405924 32.083038054596 31.9006257838553 18.01000063114277 100-101 17.951885402440126 32.536597877176895 32.43725052195795 17.07426619842503 >>END_MODULE >>Per base GC content fail #Base %GC 1 63.30784356112924 2 42.88717098530541 3 44.76839046192063 4 45.29909755020495 5 41.939981901524845 6 35.87371105791047 7 31.228115509063965 8 36.20664993044592 9 35.47672655376767 10-14 35.71681746229405 15-19 36.40193116743162 20-24 35.592892476600255 25-29 36.59279715034297 30-34 35.102767806270386 35-39 36.03616781654155 40-44 35.32895772045601 45-49 36.0218270536976 50-54 35.08567290974059 55-59 35.044247945200894 60-64 35.88102401335285 65-69 34.706323841240696 70-74 34.45019696403719 75-79 35.866122867543176 80-84 35.23946851103789 85-89 34.91343645296897 90-94 35.536015577318935 95-99 36.01633616154869 100-101 35.026151600865155 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1066.0 1 862.0 2 603.5 3 568.0 4 655.0 5 749.0 6 873.5 7 1031.5 8 1217.0 9 1512.0 10 1876.5 11 2340.5 12 2893.5 13 3577.0 14 4515.0 15 6434.5 16 18917.5 17 23037.0 18 39547.5 19 97114.0 20 135034.5 21 144577.5 22 181752.0 23 272636.5 24 403304.5 25 437776.5 26 451482.0 27 426230.0 28 399673.5 29 531177.0 30 746441.5 31 909668.0 32 967947.5 33 909532.0 34 895768.5 35 876902.5 36 748500.5 37 835078.0 38 987870.5 39 1003757.5 40 925976.0 41 786538.0 42 761656.0 43 674510.5 44 539626.5 45 501596.5 46 467135.5 47 452414.0 48 384641.5 49 309482.5 50 213416.5 51 128309.0 52 117441.0 53 107204.0 54 84475.0 55 70878.5 56 57827.5 57 47660.0 58 39529.5 59 34159.5 60 29856.0 61 24163.5 62 19243.5 63 15705.0 64 12148.0 65 9107.0 66 7004.5 67 5645.0 68 4335.5 69 3137.5 70 2501.0 71 1963.0 72 1375.5 73 983.5 74 809.0 75 798.5 76 659.5 77 443.0 78 319.0 79 243.5 80 213.5 81 140.0 82 67.0 83 32.5 84 16.0 85 7.5 86 6.0 87 4.5 88 2.5 89 1.0 90 0.5 91 1.5 92 1.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.5 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.033158412270041154 2 0.23083555316808546 3 0.020290505166806326 4 0.027940853798576675 5 0.05472225015905012 6 0.7592427521357956 7 0.0032092125518928378 8 0.08868814171634173 9 0.018587552054592227 10-14 0.02705469704231207 15-19 0.027659271277894464 20-24 0.01386069253461071 25-29 0.01919937289916276 30-34 0.023944866556542363 35-39 0.02012590361978989 40-44 0.017191026979591118 45-49 0.011849240925472716 50-54 0.011212574564371395 55-59 0.009816049489370286 60-64 0.013992166726252772 65-69 0.00811827252643343 70-74 0.014802751703069574 75-79 0.010366791772469314 80-84 0.014080161263965963 85-89 0.012625663317059692 90-94 0.006432918321761965 95-99 0.010560379755438335 100-101 0.0015321401860649677 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 1.9319381E7 >>END_MODULE >>Sequence Duplication Levels fail #Total Duplicate Percentage 84.15103740209179 #Duplication Level Relative count 1 100.0 2 38.09506402992531 3 17.60548793118154 4 10.183865189896553 5 6.879409291954527 6 5.390454606377405 7 4.268255534841783 8 3.465292246956903 9 2.865811309719633 10++ 54.93779776047568 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCCCCAACCAAAGTTATCTTATTAACTAACTAAATATAAATTATTAAAGC 128262 0.6639032585981921 No Hit CTTAGAAACTGCTGCATCTCTAGGAAATCTCGATCCAACATCGAGGTCGC 112448 0.5820476339278158 No Hit GTCCTTTCGTACTAAGAAAAGTATAACTTTCGTGGATAGAAACTGACCTG 103188 0.5341164916205131 No Hit CCCCAACCAAAGTTATCTTATTAACTAACTAAATATAAATTATTAAAGCT 97001 0.502091656042189 No Hit CTCTCCAAAAAAATTACGCTGTTATCCCTACGGTAACTTATTCCTTTGCT 50347 0.2606035876615302 No Hit CTTTGCTTAAAAGAAAAGCTTTAACGCTTTTATGCGAGTTAGATGCTATT 49274 0.2550495794870446 No Hit GCTGCATCTCTAGGAAATCTCGATCCAACATCGAGGTCGCAAACTTTTTT 46900 0.2427614011028614 No Hit CCCTACGGTAACTTATTCCTTTGCTCGCTATTTAGCGGATCACTTAATTT 41323 0.21389401658365764 No Hit CCTTTGCTTAAAAGAAAAGCTTTAACGCTTTTATGCGAGTTAGATGCTAT 41070 0.21258445081651423 No Hit CAAAAACATCGCCCCTTGCAAAATAATTAACGAATAAGGGGTCCTGCCTG 38083 0.19712329292537892 No Hit CTGCTGCATCTCTAGGAAATCTCGATCCAACATCGAGGTCGCAAACTTTT 37711 0.19519776539424322 No Hit CTCCGCGATTGCCCCAACCAAAGTTATCTTATTAACTAACTAAATATAAA 37387 0.19352069302841535 No Hit CCCCAGTCTTGCCATTCATACCAGCCTCTAATTAAGAGGCAAATGATTAT 36717 0.19005267301266018 No Hit CCTCGATGTTGGATCGAGATTTCCTAGAGATGCAGCAGTTTCTAAGGGTT 36568 0.18928142677035045 No Hit CGAGAAGACCCTATCGAGCTTTAGTAAAATTGTTAGTAGCATGTAAATAT 35094 0.1816517827356891 No Hit CTGCATCTCTAGGAAATCTCGATCCAACATCGAGGTCGCAAACTTTTTTA 31808 0.16464295621065705 No Hit CCCTTAGAAACTGCTGCATCTCTAGGAAATCTCGATCCAACATCGAGGTC 30840 0.15963244371028243 No Hit GCTACCTTTGCACGGTCAAAATACCGCGGCCGTTTAACTACGTCACTGGG 30693 0.1588715497665272 No Hit CCCCAGTCTTGCCATTCATACCAGCCTCTATTTAAGAGGCAAATGATTAT 29922 0.15488073867377014 No Hit CTCTGGTCCTTTCGTACTAAGAAAAGTATAACTTTCGTGGATAGAAACTG 29852 0.15451840822436289 No Hit GCCGAGTTCCTTTTTCTTATTTTATTAAAAAATTAATTACCTGAGTTGGA 29712 0.15379374732554837 No Hit GCTAAATAGCGAGCAAAGGAATAAGTTACCGTAGGGATAACAGCGTAATT 29680 0.15362811054867648 No Hit ACTAGTATGGCCCGGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATA 29613 0.15328130854710098 No Hit GTCGCAAACTTTTTTATCAATATGAACTCTCCAAAAAAATTACGCTGTTA 29332 0.1518268106001947 No Hit ATTTTTGTGAAGAAGCAGAAATAAATTCGTAGGACGAGAAGACCCTATCG 28280 0.14638150156053137 No Hit GGGCGATGTTTTTGGTAAACAGGCGAAGTCAATATTTGCCGAGTTCCTTT 27695 0.14335345423334217 No Hit ACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACGTAGAACTCAATCT 26467 0.13699714292088344 No Hit AGCTCATCAAGTTTCGGGACACAAAACACTTTTAGTAAAAGCTTGCTCAA 26349 0.13638635730616835 No Hit GAATAAGTTACCGTAGGGATAACAGCGTAATTTTTTTGGAGAGTTCATAT 25107 0.12995757990382817 No Hit ACCAGCTATAACTTGATGCGATTAGCATTTCACATCTAATGTATCCTCAA 24199 0.12525763636008833 No Hit GCTACTAACAATTTTACTAAAGCTCGATAGGGTCTTCTCGTCCTACGAAT 24176 0.12513858492671168 No Hit GCCCCGACCAAAGTTATCTTATTAACTAACTAAATATAAATTATTAAAGC 23352 0.12087343792226055 No Hit CACCATTAACTAAAATTAATTTCTTAGAAAACCAGCTATAACTTGATGCG 23020 0.11915495636221471 No Hit CCCAACCAAAGTTATCTTATTAACTAACTAAATATAAATTATTAAAGCTT 22836 0.11820254489520135 No Hit ATAAATTCGTAGGACGAGAAGACCCTATCGAGCTTTAGTAAAATTGTTAG 22425 0.11607514754225304 No Hit AGAAGACCCTATCGAGCTTTAGTAAAATTGTTAGTAGCATGTAAATATAA 21508 0.11132861865501799 No Hit AGATAACTTTGGTTGGGGCAATCGCGGAGAATATAAATCCTCCGCTAAAA 21403 0.1107851229809071 No Hit GCCGTTTAACTACGTCACTGGGCAGGCAGGACCCCTTATTCGTTAATTAT 20662 0.10694959636646742 No Hit CCCCGACCAAAGTTATCTTATTAACTAACTAAATATAAATTATTAAAGCT 20086 0.10396813438277346 No Hit TATAAATCCTCCGCTAAAAGTATTAAAAATTACTATTTTTAAATTAAGTG 19952 0.10327453037962242 No Hit GCTCGCTATTTAGCGGATCACTTAATTTAAAAATAGTAATTTTTAATACT 19899 0.10300019446792834 No Hit >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position GGGGG 1182780 3.381463 8.513684 1 TTTTT 19203780 3.0831795 4.592081 2 GGGGC 1017210 2.880632 8.770261 2 CGCGG 981420 2.753015 7.512227 20-24 CCCCC 1009455 2.7521381 12.169813 1 GCCCC 960555 2.6438022 48.451576 1 GCAGG 1521125 2.4199624 8.569608 2 CCCCT 1550345 2.3989289 8.418898 1 CCAAC 2702455 2.3698552 15.788256 4 GACCC 1487905 2.322587 6.712867 7 AGGGG 1442580 2.316899 5.068883 35-39 TGGGG 1436810 2.3093104 7.966535 8 CTGGG 1449365 2.3074763 10.060545 1 GTTGG 2528270 2.284487 6.3469048 8 GCCGG 808200 2.2671096 9.093044 55-59 CCGCG 808570 2.2467144 12.036744 3 CCCCA 1446540 2.2366793 33.486427 1 GGCAG 1370075 2.1796565 8.152922 1 TCCGC 1373165 2.145039 9.118861 2 GGCCG 758810 2.1285641 7.322227 75-79 TTCCT 4235675 2.1111698 5.402685 65-69 CCTGC 1345380 2.101636 6.9295897 1 GCTGC 1330510 2.0982351 9.675553 1 GGGGT 1280165 2.0575428 5.061883 3 GGGCA 1288350 2.04964 5.159313 1 CTTCC 2287775 2.0091302 5.6507645 1 CGGCC 719910 2.0003612 7.437034 75-79 CCCTA 2273450 1.9950992 8.403832 1 CCCTT 2218560 1.9483455 6.1372514 1 CCTTT 3900925 1.9443218 9.121477 3 CAGGC 1208740 1.9048164 5.280625 20-24 TCGAG 2125440 1.9009683 5.2897677 30-34 GCGAG 1187395 1.8890305 5.311122 9 TGGGC 1182230 1.8821813 6.5668507 95-97 CCTCC 1212645 1.8763882 6.508146 1 GGGCG 659820 1.8685412 9.829818 1 CCCAG 1177860 1.8386134 15.456562 2 CCAAA 3576910 1.7789403 10.374543 8 GGCGA 1117185 1.777333 6.374829 2 GGTCG 1114535 1.7744064 7.30024 45-49 CGCCG 629995 1.750521 9.170904 55-59 CGAGG 1090215 1.7344264 6.7862406 40-44 GCCTG 1098950 1.7330612 5.8605547 1 CAACC 1965055 1.7232093 14.659995 5 CGCTG 1076830 1.6981776 5.6826134 1 TCTCC 1915815 1.682474 5.575803 2 CTTTC 3370270 1.6798296 7.226525 4 AAGCT 3342670 1.6795236 5.125264 45-49 GCCCA 1056100 1.6485487 5.2323236 1 CGCCC 596890 1.6428618 6.6824217 1 CCTCG 1033080 1.6137878 10.72829 1 CTGGC 1023035 1.6133422 5.848916 45-49 CTCTC 1827435 1.6048584 7.0030184 1 CTGCT 1809940 1.6046578 11.400238 9 CAAAG 3180150 1.5967041 10.306101 9 CCTAC 1814040 1.5919371 5.3221407 2 TTGCC 1793620 1.5901887 12.078604 9 TCCTA 3164270 1.5760077 5.067891 65-69 CCTGG 997820 1.5735776 5.3298306 45-49 AAAGT 5483570 1.5625935 5.00861 9 CCAGC 995875 1.5545388 6.538433 2 ACCAA 3121970 1.5526805 10.593234 7 CTCCG 969725 1.5148201 9.654777 1 TCCTT 3033895 1.5121716 8.590841 2 CCTAG 1698920 1.5051349 7.60628 65-69 CCGGG 536145 1.5039588 8.693247 1 CTCCT 1709885 1.5016257 6.789887 1 CTTTG 2966840 1.4928567 5.752972 1 CTCCA 1685125 1.4788058 5.767444 1 CCCAA 1669470 1.464003 14.282303 3 TCGCC 933300 1.4579202 7.764568 9 CTCGC 930140 1.452984 5.2642393 1 CCCGG 518895 1.4418155 5.897495 1 GCGGC 506325 1.4203099 6.566969 75-79 TCCTG 1600320 1.4188128 5.7626777 2 CGGGG 498035 1.410383 8.839536 1 CTGCA 1591135 1.4096442 7.563629 2 CCCCG 510965 1.4063644 14.287157 1 CTTGC 1580865 1.4015644 8.722654 8 CTCCC 899250 1.391456 7.687409 1 ATCCC 1561400 1.3702294 6.141695 95-97 GCTCG 868165 1.3691096 5.4022036 20-24 TCCCT 1552230 1.3631727 5.755233 95-97 GTCCT 1510580 1.339251 14.12413 1 CGGTC 843690 1.3305123 5.9517026 60-64 CCGAG 826890 1.3030708 5.991338 2 TGCTG 1455470 1.3027017 5.5954986 2 GAAAC 2561020 1.2858486 6.769793 5 CTCGG 811485 1.2797244 8.866381 1 GCATC 1434790 1.2711326 5.557263 4 CCGGT 789340 1.2448014 5.533525 55-59 GGCCC 445515 1.2379199 13.750685 9 GTCGC 782870 1.2345982 6.9338717 45-49 CCCTG 790245 1.2344521 6.134142 1 AACCA 2473720 1.2302798 9.496511 6 ACTGC 1383820 1.2259766 11.21265 8 CACCA 1365020 1.1970226 5.057827 1 GATGC 1336835 1.1956494 5.1036534 5 TGGCC 753125 1.1876899 8.874211 8 GTCTT 2348465 1.1817024 5.6939893 6 CGATG 1315145 1.17625 6.9924254 4 ATGGC 1310090 1.171729 5.7895513 7 ACGCC 729340 1.1384836 5.263567 55-59 CGTGG 710365 1.1309439 5.198633 30-34 GGTCC 706970 1.1149025 5.928175 5 GCCGA 704235 1.1097825 5.9130125 1 GCTAC 1252555 1.1096841 6.7667203 95-97 GATGT 2163910 1.0984265 5.129274 5 TTCGT 2168470 1.0911323 7.3038497 6 AACTG 2148020 1.0792719 6.555134 7 TCGGC 676050 1.0661414 5.023691 2 CTACT 2130720 1.0612341 6.0036607 95-97 CATGC 1197490 1.0609001 7.189637 90-94 CCAGT 1182255 1.0474026 9.577818 3 GCCGT 639600 1.0086591 5.7570114 1 CGGGC 351835 0.9869446 5.2538757 1 GCGAT 1062485 0.950274 5.9829464 5 GCCCT 597265 0.93299556 5.4815254 1 GCTCA 1047360 0.9278943 5.3494925 2 GTACT 1794985 0.9025455 6.650821 9 TCTTG 1769965 0.8906123 5.753365 7 CCCGA 568340 0.8871662 5.5014234 2 CTGGA 942065 0.84257174 5.1268663 2 CTCTG 887810 0.78711516 5.0121775 1 CCCGC 277275 0.7631632 5.7815266 1 TCGTA 1508245 0.7583683 7.3091364 7 CTTAG 1454700 0.7314451 6.9563603 1 TTTCG 1445780 0.72748876 6.120075 5 CAGTC 800850 0.7095021 7.899076 4 CGCGA 436535 0.6879222 6.5915694 4 CGTAC 543855 0.48182097 9.987052 8 >>END_MODULE