##FastQC 0.10.1 >>Basic Statistics pass #Measure Value Filename 3291_5903_10011_H94MGADXX_HK_CF35_ACAGTG_R1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 87027784 Filtered Sequences 0 Sequence length 101 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.603199927508207 34.0 31.0 34.0 30.0 34.0 2 31.691463670958232 34.0 31.0 34.0 30.0 34.0 3 31.789959767331315 34.0 31.0 34.0 30.0 34.0 4 35.09173628964286 37.0 35.0 37.0 33.0 37.0 5 34.85217619697176 37.0 35.0 37.0 32.0 37.0 6 34.57159180337167 37.0 35.0 37.0 32.0 37.0 7 34.66059694223629 37.0 35.0 37.0 32.0 37.0 8 34.669675962334054 37.0 35.0 37.0 32.0 37.0 9 36.329690458394296 39.0 37.0 39.0 32.0 39.0 10-14 36.54381953239209 39.4 37.2 39.4 32.0 39.4 15-19 37.63224170340819 41.0 38.2 41.0 32.0 41.0 20-24 37.57162727020603 41.0 39.0 41.0 32.0 41.0 25-29 37.428551084329584 40.8 38.2 41.0 31.8 41.0 30-34 37.244572719443255 40.0 38.0 41.0 31.0 41.0 35-39 37.10872825395624 40.0 38.0 41.0 30.6 41.0 40-44 36.928391321557726 40.0 38.0 41.0 30.0 41.0 45-49 36.64178236688183 40.0 37.6 41.0 30.0 41.0 50-54 36.310632052862566 40.0 36.8 41.0 29.4 41.0 55-59 35.92292473171556 39.6 35.8 41.0 28.4 41.0 60-64 35.56165337956899 39.0 35.0 41.0 28.0 41.0 65-69 34.93505560247288 37.8 35.0 40.6 27.8 41.0 70-74 34.16827295292272 36.6 34.8 39.4 26.4 41.0 75-79 33.29579276199886 35.4 34.0 38.0 26.0 39.8 80-84 32.5162617745156 35.0 34.0 36.6 25.4 38.6 85-89 31.862847945203338 35.0 34.0 35.8 24.6 37.0 90-94 31.423964367517392 35.0 33.6 35.0 22.8 36.0 95-99 31.08513053486459 35.0 33.0 35.0 19.4 36.0 100-101 30.58663576335576 35.0 32.5 35.0 8.5 35.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 2192591.0 3 531278.0 4 289825.0 5 192339.0 6 163486.0 7 156850.0 8 158004.0 9 165980.0 10 172497.0 11 180760.0 12 183426.0 13 183359.0 14 184254.0 15 184568.0 16 185452.0 17 185099.0 18 186468.0 19 190146.0 20 193930.0 21 201992.0 22 219697.0 23 252606.0 24 301360.0 25 365062.0 26 442366.0 27 543367.0 28 674864.0 29 761463.0 30 901877.0 31 1116734.0 32 1410084.0 33 1875428.0 34 2670160.0 35 4071296.0 36 7669937.0 37 1.7239999E7 38 2.8655057E7 39 1.1734945E7 40 39178.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.766144936738435 19.182586777287458 15.37943635144496 39.67183193452915 2 19.076711882188746 21.49868513630183 33.91509092307263 25.50951205843679 3 18.581999180481073 22.76967469203938 28.961343258017912 29.68698286946163 4 21.5679038874888 26.282054376514413 24.589539712366435 27.560502023630352 5 24.524898936713573 30.437427277633894 25.79166916487749 19.246004620775047 6 21.21598906996935 35.62981066179634 25.8494312405639 17.304769027670417 7 16.645315538797576 24.63307727186237 42.186070365220175 16.53553682411988 8 17.51040211346163 27.330520977046785 34.87377536858797 20.285301540903607 9 18.046000716798467 25.459794266083474 36.574105577851675 19.920099439266387 10-14 18.97913286104901 32.35075425953713 30.14864961865652 18.52146326075734 15-19 19.46597685193331 30.673876068234584 30.528525450159876 19.331621629672227 20-24 19.155539475909215 30.718622132032454 30.56202401539025 19.563814376668084 25-29 19.321294414472423 30.489905971214746 30.470820116360457 19.717979497952374 30-34 19.05100734467035 30.79793060686638 30.717720291263788 19.433341757199475 35-39 19.27330998178819 30.8980008459979 30.35317380438069 19.47551536783322 40-44 19.16284379221683 30.75886213162492 30.686751165842292 19.391542910315962 45-49 19.317661656136803 30.7783282711081 30.646913270866698 19.257096801888395 50-54 19.13718403137155 30.89617039012979 30.706091650187307 19.26055392831135 55-59 19.030543212965227 30.803344376175346 30.94533789182724 19.220774519032187 60-64 19.169888912032114 30.96278796227662 30.725976676526766 19.141346449164498 65-69 19.102565720804645 30.780497347653423 30.961186886699753 19.155750044842176 70-74 19.112722510960587 30.89625514525867 30.83511505276892 19.155907291011825 75-79 19.103432207334826 30.90419718880965 30.61630751605129 19.376063087804233 80-84 19.079652757204375 30.868299483160826 30.84777329210995 19.20427446752485 85-89 19.246895382389287 30.859124774303524 30.84413800537609 19.049841837931098 90-94 19.13209430646426 30.767196026024283 30.813634557209802 19.28707511030165 95-99 19.261443135941033 30.97676210105838 30.56472038250923 19.19707438049135 100-101 19.51452909025983 30.746668673871564 30.65165565131395 19.08714658455466 >>END_MODULE >>Per base GC content fail #Base %GC 1 65.43797687126758 2 44.58622394062554 3 48.26898204994271 4 49.12840591111915 5 43.770903557488616 6 38.520758097639764 7 33.180852362917456 8 37.79570365436524 9 37.966100156064854 10-14 37.500596121806346 15-19 38.79759848160554 20-24 38.7193538525773 25-29 39.0392739124248 30-34 38.484349101869824 35-39 38.74882534962141 40-44 38.55438670253279 45-49 38.5747584580252 50-54 38.39773795968291 55-59 38.25131773199742 60-64 38.311235361196616 65-69 38.25831576564682 70-74 38.26862980197241 75-79 38.47949529513906 80-84 38.283927224729226 85-89 38.29673722032039 90-94 38.41916941676591 95-99 38.45851751643239 100-101 38.60167567481449 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2017.0 1 1330.5 2 608.5 3 709.0 4 855.5 5 916.5 6 1062.0 7 1323.0 8 1712.5 9 2281.5 10 2865.0 11 3911.0 12 5342.0 13 6897.0 14 8739.5 15 11825.0 16 21164.0 17 30417.5 18 49232.5 19 85766.5 20 123406.5 21 172487.5 22 249337.5 23 377481.0 24 567327.0 25 776542.5 26 1049765.5 27 1372843.0 28 1734073.5 29 2170970.5 30 2687740.0 31 3191579.5 32 3631416.0 33 3924775.5 34 4074508.0 35 4070086.5 36 4021241.5 37 4134296.0 38 4166741.5 39 4188527.0 40 4148498.5 41 3845029.0 42 3508331.5 43 3198787.0 44 3013156.5 45 2803087.0 46 2558170.5 47 2331039.0 48 2007202.5 49 1788348.5 50 1596332.0 51 1388902.0 52 1279397.5 53 1145053.0 54 969954.0 55 828968.5 56 699036.5 57 585842.0 58 479015.0 59 410536.5 60 350109.5 61 280320.5 62 218937.0 63 171529.5 64 130306.0 65 92385.5 66 66099.5 67 49197.5 68 37089.5 69 27827.5 70 21077.0 71 16240.5 72 12321.0 73 8932.5 74 7425.0 75 7455.0 76 6623.0 77 4407.0 78 3089.5 79 3020.5 80 2417.0 81 1403.0 82 764.0 83 387.5 84 254.5 85 132.5 86 68.0 87 42.0 88 31.5 89 21.5 90 16.0 91 11.5 92 6.0 93 5.5 94 4.0 95 2.5 96 4.0 97 4.5 98 3.5 99 4.0 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0334019765457891 2 0.2299874715872347 3 0.020914010633661544 4 0.02729243341413818 5 0.05615333144642635 6 0.7721005512446462 7 0.003121991478031889 8 0.0906227831792201 9 0.018245897195314085 10-14 0.027293812284132156 15-19 0.027686330609084566 20-24 0.013846612479527228 25-29 0.019244658694285495 30-34 0.024153206061181563 35-39 0.020268010041482844 40-44 0.01717037860001123 45-49 0.011858741571542255 50-54 0.011071866428312135 55-59 0.00971896515255404 60-64 0.013981282115605747 65-69 0.008077420424723212 70-74 0.014786312380423244 75-79 0.010458269280991918 80-84 0.013934630347476159 85-89 0.012672964302986273 90-94 0.006494247859970788 95-99 0.010534796565657699 100-101 0.0014851578893471536 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 8.7027784E7 >>END_MODULE >>Sequence Duplication Levels fail #Total Duplicate Percentage 86.30656864617147 #Duplication Level Relative count 1 100.0 2 60.28702573935274 3 45.529022137005406 4 31.982453082331066 5 22.30550229504387 6 17.166347103596536 7 13.247341816280287 8 11.359014583696473 9 9.6769507872872 10++ 269.4701063273488 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTCCTGTTCACTTTTCTTCCCCAATTCGAGGCTCTACACGCAAATGGCTG 127163 0.14611770420352194 No Hit >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position GGGGG 7078545 3.148779 6.6477485 1 CCCCC 6462160 2.5950677 15.489745 1 CCCCA 6716910 1.7431393 12.793636 1 CTGGG 5642715 1.55036 5.471439 1 CCCAA 9195150 1.5421015 5.7071238 2 CCTGG 5686065 1.5306321 5.8607593 1 CCTGC 5588010 1.4737737 5.490914 1 CCCCT 5696325 1.4719157 10.243916 1 CCCAG 5518760 1.4618052 7.540585 1 GCCCA 5448160 1.4431049 6.000983 1 TGGCC 5345950 1.4390765 6.136179 8 CCTCC 5567000 1.4384985 7.1445503 1 CCCTG 5411135 1.4271249 7.059545 1 GGCCC 3363815 1.4072589 7.6684375 9 CTGGA 7992740 1.3904208 5.047533 2 CTCCA 8212765 1.3714156 6.9973984 1 CTCCC 5234640 1.3526173 9.683284 1 GCCCC 3237895 1.3271476 8.294288 1 CCCAC 5096950 1.3227353 6.213172 1 CCAGT 7731940 1.3178124 6.004061 3 TCCTG 7482635 1.269829 6.718433 2 CTCCT 7543230 1.254188 9.004337 1 CCCTC 4816300 1.2445196 5.062514 1 CGGGG 2842465 1.238819 5.6945033 1 CCTGT 7283850 1.2360947 7.059528 3 CCCCG 2748480 1.1265463 9.189562 1 CCCGG 2514390 1.0519003 6.417818 1 CTCGG 3671300 0.98827744 6.7464514 1 CCTCG 3717800 0.9805272 5.90754 1 CTCCG 3110720 0.82041675 6.1263704 1 CCCGC 1992280 0.8165952 5.251235 1 >>END_MODULE