BSMAP v2.42
Start at: Tue Jan 31 16:19:57 2012
at 3am Wed file at 22GB.
complete
139700000 reads finished. 39378 secs passed
Total number of aligned reads: 67549086 (48%)
Done.
Finished at Wed Feb 1 03:16:15 2012
Total time consumed: 39378 secs
robertsmac:bsmap-2.42 sr320$
Ran consensus of BS de novo on Fosmid 17 >10000
- complete
Running Raw BSseq on Fosmid 17 >1000
Consensus17_g1000.fa <temp link
megablast results from Consensus17_g1000.fa
@
Complete
Imported into CLC with Reference..
Exported as tab-delimited file
Running Raw BSeq on MBD consensus, node 1
Complete
Attempting to upload to CLC Server to visualize..
SP annotation of ConsensusOysterMBD_163774.fa
Started bsmap of reads on Roberts_genomic_NCBI.fa (from crassostreome) node 1
exporting to bigfish Public.
Done
Mac's FILE
greenbird
robertsmac:bsmap-2.42 sr320$ ./bsmap -a /Volumes/NGS\ Drive/NGS\ Raw\ Data/Oyster_BSseq/filtered_Unlabeled_NoIndex_L003_R1.fastq -d /Volumes/Bay3\ scratch/Roberts_Cgigas_genomic_NCBI.fa -p 2 -o /Volumes/Bay3\ scratch/reads_Roberts_Cgigas_genomic_NCBI.BAM
done
fail on CLC import
robertsmac:bsmap-2.42 sr320$ ./bsmap -p 2 -a /Volumes/NGS\ Drive/NGS\ Raw\ Data/Oyster_BSseq/filtered_Unlabeled_NoIndex_L003_R1.fastq -d /Volumes/Bay3/Dropbox/Chrome\ Downloads/NCBI_Cg_genomic.fasta -o /Volumes/Bay3\ scratch/reads_NCBI_Cg_genomic.BAM
done