robertsmac:bin sr320$ ./phobos-mac-intel-64bit-start-from-command-line /Users/sr320/Desktop/Ostrea_lur_transcriptome.fasta /Volumes/Bay3/Software/phobos-v3.3.12-mac/output/OlyOut -M exact -u 2 --outputFormat 3
./phobos-mac-intel-64bit-start-from-command-line /Users/sr320/Desktop/Ostrea_lur_transcriptome.fasta /Volumes/Bay3/Software/phobos-v3.3.12-mac/output/OlyOut2 -M exact -u 4 --outputFormat 3
robertsmac:bin sr320$ ./phobos-mac-intel-64bit-start-from-command-line /Users/sr320/Desktop/Ostrea_lur_transcriptome.fasta /Volumes/Bay3/Software/phobos-v3.3.12-mac/output/OlyOut -M imperfect -u 2 --outputFormat 3