scaffold1328 WUBlastX LTR_Pao 311668 316782 3981 - . . scaffold1328 GLEAN mRNA 310802 321439 0.78586 - . ID=CGI_10012993; scaffold1750 WUBlastX LTR_Pao 621436 621780 318 + . . scaffold1750 GLEAN mRNA 618365 630830 0.991783 + . ID=CGI_10021499; scaffold156 WUBlastX LTR_Pao 59810 60643 511 - . . scaffold156 GLEAN mRNA 47452 61764 0.511907 + . ID=CGI_10026475; scaffold1350 WUBlastX LTR_Pao 451165 451542 74 + . . scaffold1350 GLEAN mRNA 448816 473345 0.450856 - . ID=CGI_10017319; scaffold156 WUBlastX LTR_Pao 56116 56754 595 - . . scaffold156 GLEAN mRNA 47452 61764 0.511907 + . ID=CGI_10026475; scaffold156 WUBlastX LTR_Pao 56763 57113 367 - . . scaffold156 GLEAN mRNA 47452 61764 0.511907 + . ID=CGI_10026475; scaffold156 WUBlastX LTR_Pao 60579 61241 303 - . . scaffold156 GLEAN mRNA 47452 61764 0.511907 + . ID=CGI_10026475; scaffold1018 WUBlastX LTR_Pao 571085 573070 216 + . . scaffold1018 GLEAN mRNA 568631 598731 0.537907 - . ID=CGI_10019780; scaffold1328 WUBlastX LTR_Pao 317257 317523 58 - . . scaffold1328 GLEAN mRNA 310802 321439 0.78586 - . ID=CGI_10012993; scaffold156 WUBlastX LTR_Pao 59305 59772 285 - . . scaffold156 GLEAN mRNA 47452 61764 0.511907 + . ID=CGI_10026475; scaffold286 WUBlastX LTR_Pao 282687 283715 916 - . . scaffold286 GLEAN mRNA 282191 289004 0.700364 - . ID=CGI_10015966; scaffold1021 WUBlastX LTR_Pao 581251 581544 245 - . . scaffold1021 GLEAN mRNA 573402 587681 0.999217 - . ID=CGI_10022504; scaffold1021 WUBlastX LTR_Pao 586892 587539 20 - . . scaffold1021 GLEAN mRNA 573402 587681 0.999217 - . ID=CGI_10022504; scaffold156 WUBlastX LTR_Pao 57913 58596 516 - . . scaffold156 GLEAN mRNA 47452 61764 0.511907 + . ID=CGI_10026475; scaffold156 WUBlastX LTR_Pao 59293 59682 299 - . . scaffold156 GLEAN mRNA 47452 61764 0.511907 + . ID=CGI_10026475; scaffold156 WUBlastX LTR_Pao 59675 59803 57 - . . scaffold156 GLEAN mRNA 47452 61764 0.511907 + . ID=CGI_10026475; scaffold1750 WUBlastX LTR_Pao 618407 619150 29 + . . scaffold1750 GLEAN mRNA 618365 630830 0.991783 + . ID=CGI_10021499; scaffold681 WUBlastX LTR_Pao 261347 261856 26 + . . scaffold681 GLEAN mRNA 261347 261886 0.999068 + . ID=CGI_10014731; scaffold748 WUBlastX LTR_Pao 17858 18340 384 - . . scaffold748 GLEAN mRNA 17858 18358 0.999372 - . ID=CGI_10012638; scaffold156 WUBlastX LTR_Pao 57119 57946 495 - . . scaffold156 GLEAN mRNA 47452 61764 0.511907 + . ID=CGI_10026475; scaffold286 WUBlastX LTR_Pao 284821 285438 442 - . . scaffold286 GLEAN mRNA 282191 289004 0.700364 - . ID=CGI_10015966; scaffold1750 WUBlastX LTR_Pao 623235 623312 36 + . . scaffold1750 GLEAN mRNA 618365 630830 0.991783 + . ID=CGI_10021499; scaffold1021 WUBlastX LTR_Pao 585552 586595 274 - . . scaffold1021 GLEAN mRNA 573402 587681 0.999217 - . ID=CGI_10022504; scaffold1750 WUBlastX LTR_Pao 621779 622255 374 + . . scaffold1750 GLEAN mRNA 618365 630830 0.991783 + . ID=CGI_10021499; scaffold286 WUBlastX LTR_Pao 283721 284821 735 - . . scaffold286 GLEAN mRNA 282191 289004 0.700364 - . ID=CGI_10015966; scaffold925 WUBlastX LTR_Pao 127659 127994 52 + . . scaffold925 GLEAN mRNA 124334 157225 0.393067 - . ID=CGI_10017412; scaffold925 WUBlastX LTR_Pao 128706 131678 2481 + . . scaffold925 GLEAN mRNA 124334 157225 0.393067 - . ID=CGI_10017412; scaffold43986 WUBlastX LTR_Pao 387189 389708 1753 - . . scaffold43986 GLEAN mRNA 386684 393718 0.985724 - . ID=CGI_10015036; scaffold43986 WUBlastX LTR_Pao 389716 391899 1449 - . . scaffold43986 GLEAN mRNA 386684 393718 0.985724 - . ID=CGI_10015036; scaffold43986 WUBlastX LTR_Pao 391892 392536 388 - . . scaffold43986 GLEAN mRNA 386684 393718 0.985724 - . ID=CGI_10015036; scaffold1021 WUBlastX LTR_Pao 581544 583004 1070 - . . scaffold1021 GLEAN mRNA 573402 587681 0.999217 - . ID=CGI_10022504; scaffold156 WUBlastX LTR_Pao 61229 61339 20 - . . scaffold156 GLEAN mRNA 47452 61764 0.511907 + . ID=CGI_10026475; scaffold1750 WUBlastX LTR_Pao 623305 625314 1514 + . . scaffold1750 GLEAN mRNA 618365 630830 0.991783 + . ID=CGI_10021499; scaffold286 WUBlastX LTR_Pao 287296 288240 247 - . . scaffold286 GLEAN mRNA 282191 289004 0.700364 - . ID=CGI_10015966; scaffold1350 WUBlastX LTR_Pao 452136 456443 2853 + . . scaffold1350 GLEAN mRNA 448816 473345 0.450856 - . ID=CGI_10017319; scaffold156 WUBlastX LTR_Pao 58985 59308 257 - . . scaffold156 GLEAN mRNA 47452 61764 0.511907 + . ID=CGI_10026475; scaffold1750 WUBlastX LTR_Pao 618746 621442 965 + . . scaffold1750 GLEAN mRNA 618365 630830 0.991783 + . ID=CGI_10021499; scaffold1750 WUBlastX LTR_Pao 619346 621433 1051 + . . scaffold1750 GLEAN mRNA 618365 630830 0.991783 + . ID=CGI_10021499; scaffold286 WUBlastX LTR_Pao 285429 287246 1125 - . . scaffold286 GLEAN mRNA 282191 289004 0.700364 - . ID=CGI_10015966; scaffold86 WUBlastX LTR_Pao 205361 205621 257 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold1018 WUBlastX LTR_Pao 573031 577050 3264 + . . scaffold1018 GLEAN mRNA 568631 598731 0.537907 - . ID=CGI_10019780; scaffold86 WUBlastX LTR_Pao 200986 205353 2885 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold925 WUBlastX LTR_Pao 127719 128678 390 + . . scaffold925 GLEAN mRNA 124334 157225 0.393067 - . ID=CGI_10017412; scaffold1179 WUBlastX LTR_Gypsy 1299484 1301928 1966 - . . scaffold1179 GLEAN mRNA 1286843 1305972 0.887369 + . ID=CGI_10027419; scaffold22 WUBlastX LTR_Gypsy 931880 933208 1266 - . . scaffold22 GLEAN mRNA 924261 941065 0.999814 - . ID=CGI_10028884; scaffold22 WUBlastX LTR_Gypsy 933494 933874 152 - . . scaffold22 GLEAN mRNA 924261 941065 0.999814 - . ID=CGI_10028884; scaffold22 WUBlastX LTR_Gypsy 933888 934400 280 - . . scaffold22 GLEAN mRNA 924261 941065 0.999814 - . ID=CGI_10028884; scaffold41568 WUBlastX LTR_Gypsy 86065 86145 25 + . . scaffold41568 GLEAN mRNA 75182 91109 0.978007 + . ID=CGI_10005300; scaffold41568 WUBlastX LTR_Gypsy 86151 88502 1891 + . . scaffold41568 GLEAN mRNA 75182 91109 0.978007 + . ID=CGI_10005300; scaffold1703 WUBlastX LTR_Gypsy 667329 670481 2596 + . . scaffold1703 GLEAN mRNA 642760 671813 0.998976 - . ID=CGI_10023072; scaffold1179 WUBlastX LTR_Gypsy 1298091 1299542 1173 - . . scaffold1179 GLEAN mRNA 1286843 1305972 0.887369 + . ID=CGI_10027419; scaffold22 WUBlastX LTR_Gypsy 930589 931887 1104 - . . scaffold22 GLEAN mRNA 924261 941065 0.999814 - . ID=CGI_10028884; scaffold22 WUBlastX LTR_Gypsy 933213 933512 292 - . . scaffold22 GLEAN mRNA 924261 941065 0.999814 - . ID=CGI_10028884; scaffold41568 WUBlastX LTR_Gypsy 89055 89894 605 + . . scaffold41568 GLEAN mRNA 75182 91109 0.978007 + . ID=CGI_10005300; scaffold189 WUBlastX LTR_Gypsy 188764 192702 3249 + . . scaffold189 GLEAN mRNA 162558 220166 0.999165 - . ID=CGI_10018675; scaffold1754 WUBlastX LTR_Gypsy 216741 218222 1737 + . . scaffold1754 GLEAN mRNA 216741 233286 0.492638 + . ID=CGI_10009584; scaffold487 WUBlastX LTR_Gypsy 432993 436949 3602 - . . scaffold487 GLEAN mRNA 428341 441144 1 + . ID=CGI_10017053; scaffold663 WUBlastX LTR_Gypsy 100758 104456 2986 - . . scaffold663 GLEAN mRNA 100296 104456 0.999692 - . ID=CGI_10005264; scaffold143 WUBlastX LTR_Gypsy 40035 40277 181 - . . scaffold143 GLEAN mRNA 39157 75752 0.728522 + . ID=CGI_10010007; scaffold143 WUBlastX LTR_Gypsy 40226 41227 975 - . . scaffold143 GLEAN mRNA 39157 75752 0.728522 + . ID=CGI_10010007; scaffold143 WUBlastX LTR_Gypsy 41239 42708 1406 - . . scaffold143 GLEAN mRNA 39157 75752 0.728522 + . ID=CGI_10010007; scaffold143 WUBlastX LTR_Gypsy 42980 43483 480 - . . scaffold143 GLEAN mRNA 39157 75752 0.728522 + . ID=CGI_10010007; scaffold1754 WUBlastX LTR_Gypsy 218225 219802 1302 + . . scaffold1754 GLEAN mRNA 216741 233286 0.492638 + . ID=CGI_10009584; scaffold1235 WUBlastX LTR_Gypsy 24706 26100 905 + . . scaffold1235 GLEAN mRNA 24706 26124 0.999999 + . ID=CGI_10011829; scaffold1235 WUBlastX LTR_Gypsy 24706 26100 905 + . . scaffold1235 GLEAN mRNA 16837 34725 0.738057 - . ID=CGI_10011828; scaffold1235 WUBlastX LTR_Gypsy 26114 26124 2574 + . . scaffold1235 GLEAN mRNA 24706 26124 0.999999 + . ID=CGI_10011829; scaffold1235 WUBlastX LTR_Gypsy 26114 28954 2574 + . . scaffold1235 GLEAN mRNA 16837 34725 0.738057 - . ID=CGI_10011828; scaffold1833 WUBlastX RC_Helitron 60844 61527 36 + . . scaffold1833 GLEAN mRNA 49110 69658 0.917044 + . ID=CGI_10007300; scaffold1833 WUBlastX RC_Helitron 62251 68409 3041 + . . scaffold1833 GLEAN mRNA 49110 69658 0.917044 + . ID=CGI_10007300; scaffold39724 WUBlastX RC_Helitron 28094 28858 216 + . . scaffold39724 GLEAN mRNA 9052 37427 0.859839 + . ID=CGI_10003578; scaffold39724 WUBlastX RC_Helitron 30866 36187 3161 + . . scaffold39724 GLEAN mRNA 9052 37427 0.859839 + . ID=CGI_10003578; scaffold39724 WUBlastX RC_Helitron 28931 30577 496 + . . scaffold39724 GLEAN mRNA 9052 37427 0.859839 + . ID=CGI_10003578; scaffold1546 WUBlastX RC_Helitron 191706 197198 3201 + . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold1652 WUBlastX RC_Helitron 226231 231123 2518 - . . scaffold1652 GLEAN mRNA 224467 242523 0.999676 - . ID=CGI_10012393; scaffold1652 WUBlastX RC_Helitron 230605 231291 381 - . . scaffold1652 GLEAN mRNA 224467 242523 0.999676 - . ID=CGI_10012393; scaffold532 WUBlastX RC_Helitron 278837 281425 1365 - . . scaffold532 GLEAN mRNA 274363 287689 0.998459 - . ID=CGI_10012533; scaffold532 WUBlastX RC_Helitron 281000 284056 1892 - . . scaffold532 GLEAN mRNA 274363 287689 0.998459 - . ID=CGI_10012533; scaffold39724 WUBlastX RC_Helitron 27755 28681 271 + . . scaffold39724 GLEAN mRNA 9052 37427 0.859839 + . ID=CGI_10003578; scaffold163 WUBlastX LTR_Gypsy-Troyk 487295 488326 943 + . . scaffold163 GLEAN mRNA 485695 492043 0.810494 + . ID=CGI_10018630; scaffold163 WUBlastX LTR_Gypsy-Troyk 488264 490780 2601 + . . scaffold163 GLEAN mRNA 485695 492043 0.810494 + . ID=CGI_10018630; scaffold163 WUBlastX LTR_Gypsy-Troyk 490887 491471 473 + . . scaffold163 GLEAN mRNA 485695 492043 0.810494 + . ID=CGI_10018630; scaffold163 WUBlastX LTR_Gypsy-Troyk 491676 491980 168 + . . scaffold163 GLEAN mRNA 491676 503218 1 - . ID=CGI_10018631; scaffold163 WUBlastX LTR_Gypsy-Troyk 491456 491980 168 + . . scaffold163 GLEAN mRNA 485695 492043 0.810494 + . ID=CGI_10018630; scaffold1900 WUBlastX LTR_Gypsy-Troyk 407729 407986 118 + . . scaffold1900 GLEAN mRNA 407729 407989 0.695611 + . ID=CGI_10017348; scaffold1462 WUBlastX RC_Helitron 367149 371852 2664 - . . scaffold1462 GLEAN mRNA 365331 374649 0.539656 - . ID=CGI_10014387; scaffold1462 WUBlastX RC_Helitron 367149 371852 2664 - . . scaffold1462 GLEAN mRNA 348326 383431 0.995853 + . ID=CGI_10014386; scaffold1462 WUBlastX RC_Helitron 372375 372995 374 - . . scaffold1462 GLEAN mRNA 365331 374649 0.539656 - . ID=CGI_10014387; scaffold1462 WUBlastX RC_Helitron 372375 372995 374 - . . scaffold1462 GLEAN mRNA 348326 383431 0.995853 + . ID=CGI_10014386; scaffold351 WUBlastX LTR_Copia 184820 184975 25 - . . scaffold351 GLEAN mRNA 182214 186264 0.847521 + . ID=CGI_10022595; scaffold1697 WUBlastX LTR_Copia 12856 13128 52 + . . scaffold1697 GLEAN mRNA 140 13575 0.983491 + . ID=CGI_10007876; scaffold733 WUBlastX LTR_Copia 40894 40989 26 + . . scaffold733 GLEAN mRNA 37672 49158 0.939016 - . ID=CGI_10025863; scaffold1017 WUBlastX LTR_Copia 190946 191086 26 + . . scaffold1017 GLEAN mRNA 181799 198515 0.999675 + . ID=CGI_10024986; scaffold491 WUBlastX LTR_Pao 45833 46468 22 + . . scaffold491 GLEAN mRNA 37754 47413 0.304389 + . ID=CGI_10006649; scaffold365 WUBlastX LTR_Pao 573585 573674 20 + . . scaffold365 GLEAN mRNA 570241 589384 0.479657 + . ID=CGI_10022743; scaffold1403 WUBlastX LTR_Pao 616950 617033 36 + . . scaffold1403 GLEAN mRNA 615329 620752 0.997653 - . ID=CGI_10020190; scaffold1403 WUBlastX LTR_Pao 617036 617089 27 + . . scaffold1403 GLEAN mRNA 615329 620752 0.997653 - . ID=CGI_10020190; scaffold352 WUBlastX LTR_Pao 153611 154693 22 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold145 WUBlastX DNA_TcMar-Tc1 422330 422572 23 + . . scaffold145 GLEAN mRNA 417763 440555 0.648525 - . ID=CGI_10026557; scaffold724 WUBlastX LTR_Gypsy 199999 200319 42 + . . scaffold724 GLEAN mRNA 198862 200526 0.996199 + . ID=CGI_10011500; scaffold1711 WUBlastX LINE_L1 346840 346986 53 + . . scaffold1711 GLEAN mRNA 341811 351623 0.999555 + . ID=CGI_10015612; scaffold43272 WUBlastX DNA_hAT-Tip100 121246 121530 56 + . . scaffold43272 GLEAN mRNA 115202 130908 0.999617 - . ID=CGI_10009669; scaffold88 WUBlastX DNA_hAT-Tip100 5569 5904 39 + . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold664 WUBlastX DNA_hAT-Tip100 550878 551153 57 + . . scaffold664 GLEAN mRNA 547583 596494 0.239728 + . ID=CGI_10021456; scaffold35960 WUBlastX DNA_hAT-Tip100 11204 11455 35 + . . scaffold35960 GLEAN mRNA 415 14469 0.999984 - . ID=CGI_10001702; scaffold40164 WUBlastX LINE_L1 8043 8123 33 + . . scaffold40164 GLEAN mRNA 2839 12364 0.429437 - . ID=CGI_10003898; scaffold432 WUBlastX DNA_hAT 369776 370048 48 + . . scaffold432 GLEAN mRNA 366486 371092 0.544852 + . ID=CGI_10023101; scaffold1121 WUBlastX DNA_hAT-Tip100 140644 140964 46 - . . scaffold1121 GLEAN mRNA 136074 147948 0.722367 - . ID=CGI_10006507; scaffold57 WUBlastX DNA_TcMar-Tc1 59666 59938 71 - . . scaffold57 GLEAN mRNA 58352 60491 0.999999 - . ID=CGI_10020536; scaffold40388 WUBlastX LTR_DIRS 16936 17109 21 - . . scaffold40388 GLEAN mRNA 12767 20177 0.999676 - . ID=CGI_10004075; scaffold1634 WUBlastX LTR_Copia 100114 100215 36 - . . scaffold1634 GLEAN mRNA 100114 110322 0.998817 - . ID=CGI_10005154; scaffold631 WUBlastX LINE_CR1 132779 133171 28 - . . scaffold631 GLEAN mRNA 131392 145592 0.831917 - . ID=CGI_10014172; scaffold950 WUBlastX LINE_L2 235298 235408 43 - . . scaffold950 GLEAN mRNA 224684 252187 0.638871 - . ID=CGI_10022925; scaffold42096 WUBlastX LINE_CR1 105776 105844 23 + . . scaffold42096 GLEAN mRNA 96755 112781 0.947295 - . ID=CGI_10006165; scaffold1001 WUBlastX LINE_CR1 25884 26021 26 + . . scaffold1001 GLEAN mRNA 4766 38685 0.672255 - . ID=CGI_10007116; scaffold998 WUBlastX LINE_L2 127657 128046 25 + . . scaffold998 GLEAN mRNA 116508 131912 0.996071 - . ID=CGI_10006465; scaffold168 WUBlastX LINE_CR1-L2 182095 182274 49 + . . scaffold168 GLEAN mRNA 178276 183101 0.805771 - . ID=CGI_10025586; scaffold681 WUBlastX LINE_CR1 35255 35530 57 + . . scaffold681 GLEAN mRNA 27385 42751 0.999855 + . ID=CGI_10014717; scaffold513 WUBlastX LINE_L2 356184 356534 35 + . . scaffold513 GLEAN mRNA 355722 357536 0.999999 + . ID=CGI_10022151; scaffold601 WUBlastX LTR_Gypsy 1147584 1147721 48 - . . scaffold601 GLEAN mRNA 1147404 1147721 0.999451 - . ID=CGI_10026859; scaffold1217 WUBlastX LTR_Gypsy 134003 134056 28 + . . scaffold1217 GLEAN mRNA 132340 134181 0.739794 + . ID=CGI_10009995; scaffold1217 WUBlastX LTR_Gypsy-Cigr 134139 134181 48 + . . scaffold1217 GLEAN mRNA 132340 134181 0.739794 + . ID=CGI_10009995; scaffold38058 WUBlastX LTR_Gypsy 4495 4710 23 - . . scaffold38058 GLEAN mRNA 3486 8173 0.999159 - . ID=CGI_10002595; scaffold90 WUBlastX LTR_Gypsy 139988 140209 48 + . . scaffold90 GLEAN mRNA 135730 142790 0.547035 + . ID=CGI_10015161; scaffold363 WUBlastX LTR_Gypsy 501393 501554 29 - . . scaffold363 GLEAN mRNA 500751 501623 1 - . ID=CGI_10019310; scaffold695 WUBlastX LTR_Gypsy 464045 464302 30 - . . scaffold695 GLEAN mRNA 462757 466926 0.17973 - . ID=CGI_10023290; scaffold1442 WUBlastX DNA_En-Spm 72882 72918 31 - . . scaffold1442 GLEAN mRNA 72882 75260 0.853071 + . ID=CGI_10003587; scaffold407 WUBlastX LINE_RTE 14000 14137 35 + . . scaffold407 GLEAN mRNA 13072 17204 0.999998 + . ID=CGI_10002626; scaffold38854 WUBlastX LINE_L2 17582 17728 20 + . . scaffold38854 GLEAN mRNA 17499 20462 0.835209 + . ID=CGI_10003011; scaffold1703 WUBlastX LINE_L2 195440 195577 38 + . . scaffold1703 GLEAN mRNA 194376 196581 0.999238 + . ID=CGI_10023047; scaffold1581 WUBlastX LINE_L2 16436 17203 21 + . . scaffold1581 GLEAN mRNA 16229 17959 0.999661 + . ID=CGI_10005309; scaffold3 WUBlastX LINE_L2 670070 670291 64 + . . scaffold3 GLEAN mRNA 666595 677011 1 + . ID=CGI_10027296; scaffold603 WUBlastX DNA_Crypton 78288 78551 62 + . . scaffold603 GLEAN mRNA 77256 78707 0.999999 + . ID=CGI_10009899; scaffold1703 WUBlastX LTR_Ngaro 209003 209113 61 - . . scaffold1703 GLEAN mRNA 209003 209413 0.77673 - . ID=CGI_10023048; scaffold1484 WUBlastX LTR_DIRS 106762 107124 29 - . . scaffold1484 GLEAN mRNA 103851 118273 0.818682 - . ID=CGI_10013260; scaffold42306 WUBlastX LTR_DIRS 123483 123761 52 - . . scaffold42306 GLEAN mRNA 115556 155578 0.855145 + . ID=CGI_10006611; scaffold1180 WUBlastX LTR_DIRS 23575 23790 44 + . . scaffold1180 GLEAN mRNA 13672 45655 0.485788 + . ID=CGI_10005979; scaffold1656 WUBlastX LTR_DIRS 62642 62836 47 + . . scaffold1656 GLEAN mRNA 45907 73911 0.308617 - . ID=CGI_10006142; scaffold444 WUBlastX LTR_Ngaro 38693 39079 42 - . . scaffold444 GLEAN mRNA 38666 39079 0.733495 - . ID=CGI_10017431; scaffold42604 WUBlastX LTR_DIRS 28589 29245 22 + . . scaffold42604 GLEAN mRNA 28580 37433 1 + . ID=CGI_10007312; scaffold1715 WUBlastX LINE_Jockey 338282 338452 45 - . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold399 WUBlastX LINE_DRE 218859 219356 24 + . . scaffold399 GLEAN mRNA 211507 220094 0.999351 + . ID=CGI_10009289; scaffold445 WUBlastX LINE_R2-Hero 324237 324596 64 + . . scaffold445 GLEAN mRNA 299978 341164 0.811094 - . ID=CGI_10019444; scaffold433 WUBlastX LINE_R2-Hero 889343 889486 55 + . . scaffold433 GLEAN mRNA 884339 892150 0.999994 + . ID=CGI_10027099; scaffold433 WUBlastX LINE_R2-Hero 889492 889569 21 + . . scaffold433 GLEAN mRNA 884339 892150 0.999994 + . ID=CGI_10027099; scaffold1199 WUBlastX RC_Helitron 47715 47879 35 - . . scaffold1199 GLEAN mRNA 46410 49371 0.592263 - . ID=CGI_10005923; scaffold1671 WUBlastX RC_Helitron 222168 222251 22 + . . scaffold1671 GLEAN mRNA 221124 227498 0.633477 + . ID=CGI_10015147; scaffold1671 WUBlastX RC_Helitron 222783 222857 36 + . . scaffold1671 GLEAN mRNA 221124 227498 0.633477 + . ID=CGI_10015147; scaffold38900 WUBlastX DNA_Harbinger 48942 49109 36 - . . scaffold38900 GLEAN mRNA 46553 49675 0.811602 - . ID=CGI_10003041; scaffold1226 WUBlastX DNA_hAT-Tip100 37139 37153 45 - . . scaffold1226 GLEAN mRNA 32404 37153 0.999547 - . ID=CGI_10002682; scaffold48 WUBlastX DNA_hAT-Tip100 269636 269848 67 - . . scaffold48 GLEAN mRNA 269582 278599 0.988048 - . ID=CGI_10023891; scaffold292 WUBlastX DNA_hAT-Ac 8573 8698 75 + . . scaffold292 GLEAN mRNA 5287 26747 0.497399 + . ID=CGI_10003526; scaffold773 WUBlastX DNA_hAT-Tip100 194504 194590 25 + . . scaffold773 GLEAN mRNA 191166 196246 0.998027 + . ID=CGI_10011345; scaffold34302 WUBlastX DNA_IS4EU 13321 13455 32 + . . scaffold34302 GLEAN mRNA 961 13534 0.696945 + . ID=CGI_10001259; scaffold485 WUBlastX DNA_IS4EU 826770 826895 49 + . . scaffold485 GLEAN mRNA 823477 836722 0.499894 - . ID=CGI_10024196; scaffold58 WUBlastX DNA_IS4EU 551443 551453 45 - . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; scaffold1244 WUBlastX DNA_IS4EU 605184 605582 64 + . . scaffold1244 GLEAN mRNA 508938 634898 0.0392589 - . ID=CGI_10020838; scaffold1362 WUBlastX DNA_IS4EU 572964 573362 64 - . . scaffold1362 GLEAN mRNA 572276 574419 0.938876 - . ID=CGI_10023946; scaffold44054 WUBlastX DNA_IS4EU 428916 429017 27 - . . scaffold44054 GLEAN mRNA 428351 451614 0.884147 - . ID=CGI_10016180; scaffold1678 WUBlastX LINE_L1 175483 175956 24 - . . scaffold1678 GLEAN mRNA 153695 176010 0.290685 - . ID=CGI_10010386; scaffold365 WUBlastX LINE_L1 446318 446872 22 - . . scaffold365 GLEAN mRNA 445580 454152 1 - . ID=CGI_10022738; scaffold37712 WUBlastX LTR_Gypsy 37291 37437 63 - . . scaffold37712 GLEAN mRNA 15194 37462 0.403354 - . ID=CGI_10002463; scaffold257 WUBlastX LTR_Gypsy 1606452 1606601 35 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold126 WUBlastX DNA_Harbinger 72071 72202 69 + . . scaffold126 GLEAN mRNA 72071 89869 0.988186 + . ID=CGI_10019179; scaffold292 WUBlastX DNA_Harbinger 23605 23844 22 + . . scaffold292 GLEAN mRNA 5287 26747 0.497399 + . ID=CGI_10003526; scaffold30682 WUBlastX DNA_Harbinger 1764 2015 62 - . . scaffold30682 GLEAN mRNA 363 3344 1 - . ID=CGI_10000658; scaffold626 WUBlastX DNA_Harbinger 141405 141551 57 - . . scaffold626 GLEAN mRNA 111038 155634 0.745946 - . ID=CGI_10019981; scaffold707 WUBlastX DNA_Harbinger 48251 48412 40 - . . scaffold707 GLEAN mRNA 28186 50322 0.998251 + . ID=CGI_10007721; scaffold387 WUBlastX LTR_Gypsy 29058 29156 27 - . . scaffold387 GLEAN mRNA 27360 40673 0.998991 + . ID=CGI_10004497; scaffold117 WUBlastX LTR_Gypsy 382852 383589 32 + . . scaffold117 GLEAN mRNA 381424 383832 0.991601 + . ID=CGI_10016969; scaffold40828 WUBlastX LTR_Gypsy 57388 57657 39 - . . scaffold40828 GLEAN mRNA 28348 61048 0.605765 + . ID=CGI_10004502; scaffold1024 WUBlastX DNA_TcMar-Tc1 262911 263018 70 - . . scaffold1024 GLEAN mRNA 251261 271480 0.999675 - . ID=CGI_10028529; scaffold58 WUBlastX LINE_L1 738678 738800 34 + . . scaffold58 GLEAN mRNA 729182 751705 0.472398 + . ID=CGI_10023162; scaffold365 WUBlastX DNA_Merlin 80320 80490 63 + . . scaffold365 GLEAN mRNA 78147 85364 0.919357 - . ID=CGI_10022718; scaffold163 WUBlastX LTR_Gypsy 477239 477280 30 + . . scaffold163 GLEAN mRNA 440738 483510 0.311673 + . ID=CGI_10018629; scaffold1804 WUBlastX DNA_NOF 169453 169593 32 + . . scaffold1804 GLEAN mRNA 167649 169662 1 + . ID=CGI_10013372; scaffold170 WUBlastX DNA_MuDR 69232 69495 58 - . . scaffold170 GLEAN mRNA 33602 72151 0.952643 - . ID=CGI_10007431; scaffold1283 WUBlastX DNA_TcMar-Marin 249818 249931 46 + . . scaffold1283 GLEAN mRNA 240961 258563 0.432673 - . ID=CGI_10011796; scaffold40644 WUBlastX LINE_Penelope 77667 77768 41 + . . scaffold40644 GLEAN mRNA 74819 77768 0.999935 - . ID=CGI_10004306; scaffold366 WUBlastX DNA_Novosib 11619 11789 30 + . . scaffold366 GLEAN mRNA 509 12362 0.308663 - . ID=CGI_10007770; scaffold366 WUBlastX DNA_Novosib 11619 11789 30 + . . scaffold366 GLEAN mRNA 4558 26262 1 + . ID=CGI_10007771; scaffold1036 WUBlastX DNA_P 277413 277532 30 - . . scaffold1036 GLEAN mRNA 273314 285936 0.919073 + . ID=CGI_10019959; scaffold43798 WUBlastX LINE_L1 1019 1294 20 - . . scaffold43798 GLEAN mRNA 709 50895 0.990383 - . ID=CGI_10012536; scaffold1058 WUBlastX LTR_Gypsy 12363 12662 24 - . . scaffold1058 GLEAN mRNA 10764 12980 0.538394 - . ID=CGI_10004875; scaffold596 WUBlastX DNA_TcMar-Tc1 213673 213777 68 - . . scaffold596 GLEAN mRNA 209515 220415 0.999343 + . ID=CGI_10009578; scaffold962 WUBlastX DNA_TcMar-Tc1 1323012 1323191 50 + . . scaffold962 GLEAN mRNA 1315869 1333325 0.896664 + . ID=CGI_10027695; scaffold317 WUBlastX DNA_Kolobok-Hyd 7841 8005 20 + . . scaffold317 GLEAN mRNA 7090 24632 0.990181 + . ID=CGI_10019337; scaffold340 WUBlastX LINE_L1 189589 189957 22 + . . scaffold340 GLEAN mRNA 188953 190893 0.999998 + . ID=CGI_10011103; scaffold775 WUBlastX LINE_L1-Tx1 131840 131854 56 + . . scaffold775 GLEAN mRNA 131840 132127 0.775544 + . ID=CGI_10006095; scaffold43200 WUBlastX LINE_L1-Tx1 102454 102816 42 + . . scaffold43200 GLEAN mRNA 98578 129296 0.928438 + . ID=CGI_10009329; scaffold1041 WUBlastX LINE_L1 294654 294809 21 - . . scaffold1041 GLEAN mRNA 294420 297225 0.614409 - . ID=CGI_10014681; scaffold1650 WUBlastX LINE_L1 270781 271131 22 - . . scaffold1650 GLEAN mRNA 257574 281084 0.789325 - . ID=CGI_10017776; scaffold1106 WUBlastX LINE_L1 14129 14251 38 - . . scaffold1106 GLEAN mRNA 13450 22985 0.482682 + . ID=CGI_10002425; scaffold42770 WUBlastX LINE_L1-Tx1 26034 26216 55 - . . scaffold42770 GLEAN mRNA 14131 34729 0.562742 - . ID=CGI_10007687; scaffold433 WUBlastX LINE_L1-Tx1 414001 414066 20 + . . scaffold433 GLEAN mRNA 407360 429733 0.877924 + . ID=CGI_10027068; scaffold695 WUBlastX LINE_L1 93286 93399 25 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold1028 WUBlastX LINE_L1-Tx1 62536 62604 20 + . . scaffold1028 GLEAN mRNA 38359 105235 0.597726 - . ID=CGI_10009718; scaffold40836 WUBlastX LINE_L1 88283 88333 30 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold1897 WUBlastX LINE_L1 538822 539352 24 - . . scaffold1897 GLEAN mRNA 538003 539610 0.528485 - . ID=CGI_10020937; scaffold422 WUBlastX LINE_L1 289960 290376 24 - . . scaffold422 GLEAN mRNA 289885 299319 1 - . ID=CGI_10018806; scaffold43692 WUBlastX LINE_L1 182054 182746 44 - . . scaffold43692 GLEAN mRNA 181430 182872 1 - . ID=CGI_10011817; scaffold626 WUBlastX LINE_Penelope 482857 483258 42 - . . scaffold626 GLEAN mRNA 474315 488242 0.98805 - . ID=CGI_10020000; scaffold934 WUBlastX LINE_RTE-BovB 267998 268144 54 - . . scaffold934 GLEAN mRNA 262254 282098 1 - . ID=CGI_10015446; scaffold625 WUBlastX LINE_RTE-BovB 496300 496509 37 + . . scaffold625 GLEAN mRNA 494757 502265 0.999676 - . ID=CGI_10023420; scaffold542 WUBlastX LINE_RTE-X 84051 84173 26 + . . scaffold542 GLEAN mRNA 79940 96731 0.999415 - . ID=CGI_10014759; scaffold31956 WUBlastX LINE_L1 8298 8304 27 + . . scaffold31956 GLEAN mRNA 3660 8304 0.998023 + . ID=CGI_10000816; scaffold31956 WUBlastX LINE_L1 8433 9140 27 + . . scaffold31956 GLEAN mRNA 8433 9686 1 + . ID=CGI_10000817; scaffold772 WUBlastX DNA_PiggyBac 285389 285679 30 + . . scaffold772 GLEAN mRNA 277746 285976 1 + . ID=CGI_10016590; scaffold41598 WUBlastX DNA_PiggyBac 65707 65775 31 - . . scaffold41598 GLEAN mRNA 59426 74794 0.449575 - . ID=CGI_10005304; scaffold20 WUBlastX DNA_TcMar-Pogo 85970 86059 30 - . . scaffold20 GLEAN mRNA 85901 95584 0.999992 + . ID=CGI_10023562; scaffold204 WUBlastX DNA_PiggyBac 609341 609628 23 + . . scaffold204 GLEAN mRNA 602391 618786 0.480742 + . ID=CGI_10026119; scaffold664 WUBlastX LINE_RTE-X 578596 578982 23 - . . scaffold664 GLEAN mRNA 547583 596494 0.239728 + . ID=CGI_10021456; scaffold1751 WUBlastX LINE_RTE-X 15727 15996 40 + . . scaffold1751 GLEAN mRNA 1921 19795 0.705782 - . ID=CGI_10010082; C29388 WUBlastX LINE_RTE-X 5096 5572 41 + . . C29388 GLEAN mRNA 1255 5572 0.998536 + . ID=CGI_10000526; scaffold36638 WUBlastX LINE_RTE-X 13742 13972 49 + . . scaffold36638 GLEAN mRNA 3118 17920 0.499919 + . ID=CGI_10002047; scaffold1850 WUBlastX LINE_RTE-X 64093 64341 24 + . . scaffold1850 GLEAN mRNA 52225 78239 0.896648 + . ID=CGI_10009881; scaffold1850 WUBlastX LINE_RTE-X 64093 64341 24 + . . scaffold1850 GLEAN mRNA 55417 67382 0.791674 - . ID=CGI_10009882; scaffold664 WUBlastX LINE_RTE-X 503216 503419 76 - . . scaffold664 GLEAN mRNA 503105 503419 0.999344 - . ID=CGI_10021453; scaffold113 WUBlastX LINE_RTE-X 115214 115672 66 + . . scaffold113 GLEAN mRNA 112752 117970 0.458528 + . ID=CGI_10021286; scaffold90 WUBlastX LINE_RTE-X 278672 278968 31 - . . scaffold90 GLEAN mRNA 265227 282021 0.629226 + . ID=CGI_10015170; scaffold1188 WUBlastX LINE_RTE-X 722637 722867 33 - . . scaffold1188 GLEAN mRNA 712018 725901 0.544624 + . ID=CGI_10025499; scaffold226 WUBlastX LINE_RTE-X 264339 264581 40 + . . scaffold226 GLEAN mRNA 263267 278066 0.893615 + . ID=CGI_10025348; scaffold377 WUBlastX LINE_RTE-X 143727 143897 30 + . . scaffold377 GLEAN mRNA 140445 144953 0.80154 - . ID=CGI_10019404; scaffold39572 WUBlastX LINE_RTE-X 63095 63211 32 + . . scaffold39572 GLEAN mRNA 44325 68809 0.785898 - . ID=CGI_10003446; scaffold41022 WUBlastX LINE_RTE-X 98025 98156 46 - . . scaffold41022 GLEAN mRNA 87016 104666 0.650358 + . ID=CGI_10004637; scaffold79 WUBlastX LINE_RTE-X 212710 212859 26 - . . scaffold79 GLEAN mRNA 205076 218943 0.544852 + . ID=CGI_10024618; scaffold479 WUBlastX LINE_RTE-X 308598 308720 49 + . . scaffold479 GLEAN mRNA 298196 323122 0.478892 - . ID=CGI_10015700; scaffold583 WUBlastX LTR_Gypsy 266364 266834 42 - . . scaffold583 GLEAN mRNA 266361 266834 0.53608 - . ID=CGI_10023615; scaffold1682 WUBlastX DNA_TcMar-Marin 449114 449317 49 + . . scaffold1682 GLEAN mRNA 447464 452325 1 - . ID=CGI_10016060; scaffold1080 WUBlastX DNA_TcMar-Tc2 148571 148651 40 + . . scaffold1080 GLEAN mRNA 148571 152000 0.995421 + . ID=CGI_10012673; scaffold1080 WUBlastX DNA_TcMar-Tc2 149001 149237 31 + . . scaffold1080 GLEAN mRNA 148571 152000 0.995421 + . ID=CGI_10012673; scaffold1532 WUBlastX DNA_Sola 636951 637121 35 + . . scaffold1532 GLEAN mRNA 635106 637133 0.477064 + . ID=CGI_10028263; scaffold194 WUBlastX DNA_Sola 205153 205533 35 - . . scaffold194 GLEAN mRNA 205150 207069 0.728723 - . ID=CGI_10011067; C35952 WUBlastX DNA_Sola 436 714 47 + . . C35952 GLEAN mRNA 195 8083 0.544487 + . ID=CGI_10001669; scaffold885 WUBlastX LTR_DIRS 1017665 1018054 44 + . . scaffold885 GLEAN mRNA 1005329 1048267 0.991835 - . ID=CGI_10025234; scaffold189 WUBlastX LTR_Ngaro 37439 37531 61 - . . scaffold189 GLEAN mRNA 16396 38520 0.48054 + . ID=CGI_10018663; scaffold36904 WUBlastX LTR_Gypsy 23268 23330 22 + . . scaffold36904 GLEAN mRNA 10005 31731 0.991888 - . ID=CGI_10002168; scaffold1715 WUBlastX LINE_L1-Tx1 334024 334230 22 - . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold533 WUBlastX LINE_L1-Tx1 98043 98252 55 - . . scaffold533 GLEAN mRNA 82717 99405 0.998409 - . ID=CGI_10005555; scaffold4 WUBlastX LINE_L1-Tx1 435618 435818 52 + . . scaffold4 GLEAN mRNA 420407 460487 0.960328 - . ID=CGI_10021179; scaffold1481 WUBlastX LINE_L1-Tx1 28368 28616 27 + . . scaffold1481 GLEAN mRNA 18084 39742 0.999949 - . ID=CGI_10003892; scaffold361 WUBlastX LINE_L1-Tx1 162212 162403 45 + . . scaffold361 GLEAN mRNA 159523 162878 0.998439 - . ID=CGI_10020846; scaffold106 WUBlastX LTR_ERVK 226478 226711 28 + . . scaffold106 GLEAN mRNA 225926 241721 0.999167 + . ID=CGI_10022031; scaffold1845 WUBlastX DNA_TcMar-Tigge 138929 139186 24 - . . scaffold1845 GLEAN mRNA 137873 139480 1 - . ID=CGI_10011994; scaffold43630 WUBlastX LINE_L1-Tx1 131512 131691 20 + . . scaffold43630 GLEAN mRNA 124084 143725 0.996937 + . ID=CGI_10011525; scaffold1690 WUBlastX LINE_L1-Tx1 47721 48044 44 + . . scaffold1690 GLEAN mRNA 9012 64265 0.995929 - . ID=CGI_10003316; scaffold1605 WUBlastX LINE_Telomeric 97058 97381 35 + . . scaffold1605 GLEAN mRNA 85574 101575 0.910604 + . ID=CGI_10023348; scaffold100 WUBlastX DNA_TcMar-Tc1 440679 441005 38 - . . scaffold100 GLEAN mRNA 434385 451106 0.72825 - . ID=CGI_10026438; scaffold57 WUBlastX DNA_TcMar-Tc1 59588 59899 59 - . . scaffold57 GLEAN mRNA 58352 60491 0.999999 - . ID=CGI_10020536; scaffold168 WUBlastX LINE_CR1 20985 21176 96 - . . scaffold168 GLEAN mRNA 17788 42641 0.990039 - . ID=CGI_10025582; scaffold635 WUBlastX LTR_Gypsy-Cigr 117786 117965 70 - . . scaffold635 GLEAN mRNA 115264 124278 0.98729 - . ID=CGI_10008922; scaffold569 WUBlastX LTR_DIRS 43068 43364 49 + . . scaffold569 GLEAN mRNA 32554 62247 0.974978 + . ID=CGI_10009494; C35952 WUBlastX LINE_L2 2451 2720 56 + . . C35952 GLEAN mRNA 195 8083 0.544487 + . ID=CGI_10001669; scaffold42584 WUBlastX LINE_L2 100564 100887 48 + . . scaffold42584 GLEAN mRNA 87388 105090 0.998677 + . ID=CGI_10007309; scaffold38026 WUBlastX LTR_Gypsy 24330 24359 33 + . . scaffold38026 GLEAN mRNA 24330 29871 1 - . ID=CGI_10002428; scaffold1670 WUBlastX LINE_Jockey 398651 399004 69 + . . scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; scaffold267 WUBlastX LTR_Gypsy 150923 150975 24 + . . scaffold267 GLEAN mRNA 150724 150975 0.588634 + . ID=CGI_10018296; scaffold267 WUBlastX LTR_Gypsy 150923 150985 24 + . . scaffold267 GLEAN mRNA 150838 169540 0.999588 - . ID=CGI_10018297; scaffold1445 WUBlastX LINE_Jockey 137321 137524 35 + . . scaffold1445 GLEAN mRNA 135829 138603 0.904297 + . ID=CGI_10010370; scaffold41346 WUBlastX RC_Helitron 33674 33805 51 - . . scaffold41346 GLEAN mRNA 32052 37243 0.990251 - . ID=CGI_10004999; scaffold619 WUBlastX DNA_hAT-Hobo 486234 486398 68 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold150 WUBlastX LINE_L1 532134 532664 68 + . . scaffold150 GLEAN mRNA 532020 532706 0.618008 + . ID=CGI_10028613; scaffold675 WUBlastX DNA_TcMar-Marin 115809 115958 42 - . . scaffold675 GLEAN mRNA 109657 116904 0.999611 - . ID=CGI_10017856; scaffold36698 WUBlastX DNA_TcMar-Marin 2444 2623 39 - . . scaffold36698 GLEAN mRNA 1616 6984 0.999949 - . ID=CGI_10002014; scaffold588 WUBlastX LINE_Penelope 145921 146382 45 - . . scaffold588 GLEAN mRNA 132834 155339 0.82921 + . ID=CGI_10016211; scaffold393 WUBlastX LINE_RTE-X 721711 721944 50 - . . scaffold393 GLEAN mRNA 700989 727086 0.68143 + . ID=CGI_10026911; scaffold1743 WUBlastX LINE_RTE-X 233965 234378 49 - . . scaffold1743 GLEAN mRNA 225368 248286 0.742801 - . ID=CGI_10011658; scaffold604 WUBlastX LINE_RTE-X 45150 45341 50 - . . scaffold604 GLEAN mRNA 42759 53290 0.454666 + . ID=CGI_10005591; scaffold1675 WUBlastX LTR_Gypsy 11081 11191 26 - . . scaffold1675 GLEAN mRNA 745 11817 0.679204 - . ID=CGI_10001288; scaffold301 WUBlastX DNA_Sola 946779 947378 69 - . . scaffold301 GLEAN mRNA 935860 957762 0.976661 - . ID=CGI_10026737; scaffold94 WUBlastX DNA_Sola 50180 50302 96 + . . scaffold94 GLEAN mRNA 43492 50308 0.779981 + . ID=CGI_10013908; scaffold664 WUBlastX DNA_TcMar-Marin 656777 656941 22 - . . scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold885 WUBlastX DNA_Zator 993609 993755 69 - . . scaffold885 GLEAN mRNA 985596 995440 0.998419 + . ID=CGI_10025233; scaffold143 WUBlastX LINE_CR1 212505 213083 51 - . . scaffold143 GLEAN mRNA 211939 221171 0.564856 - . ID=CGI_10010016; scaffold1189 WUBlastX LINE_CR1-L2 847842 848069 93 - . . scaffold1189 GLEAN mRNA 845721 854724 0.805708 + . ID=CGI_10023837; scaffold635 WUBlastX LTR_Gypsy-Cigr 117822 117965 85 - . . scaffold635 GLEAN mRNA 115264 124278 0.98729 - . ID=CGI_10008922; scaffold1583 WUBlastX LTR_Gypsy 822207 822347 64 - . . scaffold1583 GLEAN mRNA 822207 822614 0.999365 - . ID=CGI_10025843; scaffold40182 WUBlastX LINE_I 18910 19005 41 + . . scaffold40182 GLEAN mRNA 7136 27863 0.492081 + . ID=CGI_10003936; scaffold461 WUBlastX DNA_IS4EU 503394 503672 28 + . . scaffold461 GLEAN mRNA 502998 509730 0.979735 + . ID=CGI_10020117; scaffold461 WUBlastX DNA_IS4EU 503741 503860 44 + . . scaffold461 GLEAN mRNA 502998 509730 0.979735 + . ID=CGI_10020117; scaffold162 WUBlastX LINE_L1 51995 52219 94 - . . scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; scaffold1488 WUBlastX LINE_RTE-X 99748 100038 27 + . . scaffold1488 GLEAN mRNA 90513 121461 0.719592 + . ID=CGI_10005179; scaffold1301 WUBlastX LINE_RTE-X 1244540 1244743 22 + . . scaffold1301 GLEAN mRNA 1240763 1263950 0.99974 - . ID=CGI_10027768; C32276 WUBlastX LTR_ERV1 9395 9616 24 - . . C32276 GLEAN mRNA 2612 10129 0.932261 - . ID=CGI_10000874; scaffold1743 WUBlastX LINE_RTE-X 50057 50242 66 + . . scaffold1743 GLEAN mRNA 46556 59343 0.501263 + . ID=CGI_10011653; scaffold1488 WUBlastX LINE_RTE-X 96216 96554 32 + . . scaffold1488 GLEAN mRNA 90513 121461 0.719592 + . ID=CGI_10005179; scaffold35286 WUBlastX LINE_L2 7502 7795 96 + . . scaffold35286 GLEAN mRNA 5633 23296 1 + . ID=CGI_10001451; scaffold1849 WUBlastX LTR_Gypsy 134133 134342 42 - . . scaffold1849 GLEAN mRNA 132203 140711 0.7781 + . ID=CGI_10015917; scaffold987 WUBlastX LTR_Gypsy 88195 88248 27 - . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold733 WUBlastX LTR_Gypsy 1018219 1018812 41 + . . scaffold733 GLEAN mRNA 1017652 1019905 0.995936 + . ID=CGI_10025901; scaffold599 WUBlastX LTR_Ngaro 32976 33368 100 - . . scaffold599 GLEAN mRNA 29083 62122 0.696781 + . ID=CGI_10021706; scaffold664 WUBlastX DNA_TcMar-Marin 655927 656016 45 - . . scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold203 WUBlastX DNA_TcMar-Marin 111559 111600 25 - . . scaffold203 GLEAN mRNA 85709 116665 0.258685 + . ID=CGI_10021064; scaffold336 WUBlastX LINE_RTE-X 216114 216233 50 - . . scaffold336 GLEAN mRNA 208327 217851 1 - . ID=CGI_10012569; scaffold36278 WUBlastX DNA_PiggyBac 28794 29246 94 - . . scaffold36278 GLEAN mRNA 22300 32002 0.651135 - . ID=CGI_10001848; scaffold237 WUBlastX LINE_R2 590432 590509 25 + . . scaffold237 GLEAN mRNA 590107 590598 0.776648 + . ID=CGI_10021587; scaffold693 WUBlastX LINE_RTE-BovB 9933 9971 25 + . . scaffold693 GLEAN mRNA 1018 11877 0.999949 - . ID=CGI_10000930; scaffold693 WUBlastX LINE_RTE-BovB 10157 10423 29 + . . scaffold693 GLEAN mRNA 1018 11877 0.999949 - . ID=CGI_10000930; scaffold1253 WUBlastX LINE_RTE-BovB 109349 109537 51 + . . scaffold1253 GLEAN mRNA 102918 110431 0.634382 - . ID=CGI_10004823; scaffold1281 WUBlastX LTR_Gypsy 7381 7566 34 + . . scaffold1281 GLEAN mRNA 6818 22494 0.72874 + . ID=CGI_10001420; scaffold922 WUBlastX LINE_L2 31238 31417 60 - . . scaffold922 GLEAN mRNA 26443 42770 0.364166 - . ID=CGI_10005661; scaffold707 WUBlastX LTR_Gypsy 40871 41041 125 - . . scaffold707 GLEAN mRNA 28186 50322 0.998251 + . ID=CGI_10007721; scaffold975 WUBlastX LINE_RTE-BovB 129941 130039 37 + . . scaffold975 GLEAN mRNA 123992 132770 1 - . ID=CGI_10013325; scaffold481 WUBlastX LINE_L2 1229223 1229483 37 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold1101 WUBlastX DNA_IS4EU 539358 540164 57 + . . scaffold1101 GLEAN mRNA 537182 541543 0.997138 + . ID=CGI_10023032; scaffold394 WUBlastX DNA_Kolobok 293295 293537 101 - . . scaffold394 GLEAN mRNA 286632 296945 0.296609 + . ID=CGI_10022077; scaffold40106 WUBlastX LINE_RTE-X 50855 51097 54 - . . scaffold40106 GLEAN mRNA 43451 51495 0.999465 - . ID=CGI_10003856; scaffold39134 WUBlastX LINE_RTE-X 41899 42348 57 - . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold492 WUBlastX LINE_RTE-X 432655 432942 68 + . . scaffold492 GLEAN mRNA 430618 435399 1 - . ID=CGI_10024835; scaffold1247 WUBlastX LINE_L1-Tx1 112215 112400 30 + . . scaffold1247 GLEAN mRNA 96036 115392 0.95838 - . ID=CGI_10008945; scaffold1704 WUBlastX DNA_Crypton 133095 133709 117 + . . scaffold1704 GLEAN mRNA 130337 165249 0.994715 + . ID=CGI_10010170; scaffold58 WUBlastX LTR_Gypsy 570806 571636 58 - . . scaffold58 GLEAN mRNA 565797 572122 0.982335 - . ID=CGI_10023152; scaffold58 WUBlastX LTR_Gypsy 570806 571636 58 - . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; scaffold252 WUBlastX DNA_MuDR 92735 92941 33 - . . scaffold252 GLEAN mRNA 92702 92941 0.866433 - . ID=CGI_10010763; scaffold252 WUBlastX DNA_MuDR 92735 92965 33 - . . scaffold252 GLEAN mRNA 89598 102247 0.999676 + . ID=CGI_10010762; scaffold1016 WUBlastX LINE_Penelope 153516 153779 46 + . . scaffold1016 GLEAN mRNA 151877 155965 1 - . ID=CGI_10016887; scaffold138 WUBlastX LINE_RTE-X 86697 86882 70 - . . scaffold138 GLEAN mRNA 84559 99053 1 + . ID=CGI_10008428; scaffold168 WUBlastX DNA_MuDR 179314 179562 101 - . . scaffold168 GLEAN mRNA 178276 183101 0.805771 - . ID=CGI_10025586; scaffold200 WUBlastX LINE_RTE-BovB 14970 15257 45 + . . scaffold200 GLEAN mRNA 11471 15537 0.697892 - . ID=CGI_10006218; scaffold4 WUBlastX LINE_RTE-X 459300 459590 41 + . . scaffold4 GLEAN mRNA 420407 460487 0.960328 - . ID=CGI_10021179; scaffold802 WUBlastX LINE_L1-Tx1 141234 141470 116 + . . scaffold802 GLEAN mRNA 137512 196873 0.499283 - . ID=CGI_10015727; scaffold400 WUBlastX LINE_L1-Tx1 197113 197310 100 - . . scaffold400 GLEAN mRNA 195909 223191 0.813725 - . ID=CGI_10011437; scaffold569 WUBlastX LTR_DIRS 40824 41111 107 + . . scaffold569 GLEAN mRNA 32554 62247 0.974978 + . ID=CGI_10009494; scaffold43182 WUBlastX LTR_Gypsy 166486 166776 111 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold456 WUBlastX LTR_Gypsy 141504 141767 105 + . . scaffold456 GLEAN mRNA 102025 155096 0.577611 + . ID=CGI_10006863; scaffold1149 WUBlastX LINE_Penelope 39706 39978 73 + . . scaffold1149 GLEAN mRNA 36464 66919 0.42199 + . ID=CGI_10023447; scaffold82 WUBlastX DNA_Kolobok 753815 753946 58 + . . scaffold82 GLEAN mRNA 743361 754636 0.569957 - . ID=CGI_10025268; scaffold1385 WUBlastX LINE_RTE-X 268826 269263 49 - . . scaffold1385 GLEAN mRNA 265685 273877 0.994335 - . ID=CGI_10013848; scaffold43130 WUBlastX LINE_RTE-X 122084 122569 52 + . . scaffold43130 GLEAN mRNA 99127 140133 0.992485 - . ID=CGI_10008963; scaffold547 WUBlastX DNA_TcMar-Pogo 206823 207068 136 - . . scaffold547 GLEAN mRNA 206215 217037 0.996504 + . ID=CGI_10018847; scaffold40948 WUBlastX LINE_L2 98630 99130 81 + . . scaffold40948 GLEAN mRNA 83628 99922 0.536967 + . ID=CGI_10004613; scaffold1849 WUBlastX LINE_CR1 84183 84596 89 - . . scaffold1849 GLEAN mRNA 72001 111634 0.818968 - . ID=CGI_10015914; scaffold39096 WUBlastX LTR_Gypsy-Cigr 22040 22513 114 + . . scaffold39096 GLEAN mRNA 2759 26289 0.999949 + . ID=CGI_10003146; scaffold1473 WUBlastX LINE_L2 18659 19012 61 - . . scaffold1473 GLEAN mRNA 13162 33966 0.99911 + . ID=CGI_10003509; scaffold1473 WUBlastX LINE_L2 18973 19476 26 - . . scaffold1473 GLEAN mRNA 13162 33966 0.99911 + . ID=CGI_10003509; scaffold1804 WUBlastX DNA_hAT-Blackja 283542 284006 82 + . . scaffold1804 GLEAN mRNA 280197 286439 0.354697 + . ID=CGI_10013383; scaffold1301 WUBlastX DNA_MuDR 795655 795894 24 - . . scaffold1301 GLEAN mRNA 795655 798380 0.702584 - . ID=CGI_10027744; scaffold1301 WUBlastX DNA_MuDR 795598 795894 24 - . . scaffold1301 GLEAN mRNA 781075 819646 0.518044 + . ID=CGI_10027743; scaffold433 WUBlastX LINE_RTE-X 812260 812619 89 + . . scaffold433 GLEAN mRNA 810817 827461 0.351164 + . ID=CGI_10027093; scaffold533 WUBlastX LINE_L1 91309 91344 20 + . . scaffold533 GLEAN mRNA 82717 99405 0.998409 - . ID=CGI_10005555; scaffold501 WUBlastX LINE_L1-Tx1 267968 268126 73 + . . scaffold501 GLEAN mRNA 267968 268585 0.999995 + . ID=CGI_10027511; scaffold164 WUBlastX LTR_Gypsy 53447 53656 93 - . . scaffold164 GLEAN mRNA 40628 54980 0.99473 - . ID=CGI_10021845; scaffold43702 WUBlastX LINE_CR1 215269 215346 63 + . . scaffold43702 GLEAN mRNA 215134 215346 0.618241 + . ID=CGI_10011914; scaffold43702 WUBlastX LINE_CR1 215269 215895 63 + . . scaffold43702 GLEAN mRNA 215243 218046 1 - . ID=CGI_10011915; scaffold1670 WUBlastX LTR_DIRS 456522 456908 102 + . . scaffold1670 GLEAN mRNA 448842 475285 0.99939 + . ID=CGI_10017627; scaffold1670 WUBlastX LTR_DIRS 456913 457107 29 + . . scaffold1670 GLEAN mRNA 448842 475285 0.99939 + . ID=CGI_10017627; scaffold39476 WUBlastX LTR_Gypsy 50125 50358 35 + . . scaffold39476 GLEAN mRNA 49505 51682 1 + . ID=CGI_10002876; scaffold619 WUBlastX DNA_MuDR 874958 875068 32 - . . scaffold619 GLEAN mRNA 870805 880758 0.920529 - . ID=CGI_10025790; scaffold695 WUBlastX LINE_L1 98923 99558 114 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold448 WUBlastX LINE_L2 66214 66546 59 + . . scaffold448 GLEAN mRNA 53576 85492 0.998765 + . ID=CGI_10024929; scaffold42236 WUBlastX DNA_hAT 126361 126456 54 + . . scaffold42236 GLEAN mRNA 112501 136266 0.999117 + . ID=CGI_10006406; scaffold42236 WUBlastX DNA_hAT 126644 127126 127 + . . scaffold42236 GLEAN mRNA 112501 136266 0.999117 + . ID=CGI_10006406; C29388 WUBlastX LTR_Gypsy-Cigr 3837 4310 153 + . . C29388 GLEAN mRNA 1255 5572 0.998536 + . ID=CGI_10000526; scaffold1634 WUBlastX LTR_Ngaro 83395 83745 90 - . . scaffold1634 GLEAN mRNA 82464 85496 0.992943 + . ID=CGI_10005152; scaffold789 WUBlastX LTR_Gypsy 323482 323829 126 + . . scaffold789 GLEAN mRNA 321917 326732 0.597754 + . ID=CGI_10017201; scaffold40264 WUBlastX LINE_L1 49437 49472 20 - . . scaffold40264 GLEAN mRNA 10435 67637 0.512371 + . ID=CGI_10004012; scaffold43932 WUBlastX DNA_TcMar-Tc2 191409 192149 132 + . . scaffold43932 GLEAN mRNA 184217 200506 0.993526 + . ID=CGI_10014122; scaffold1789 WUBlastX DNA_TcMar-Tc1 26345 26623 73 - . . scaffold1789 GLEAN mRNA 24055 30627 0.651132 - . ID=CGI_10003176; scaffold43036 WUBlastX LTR_Pao 27045 27152 123 - . . scaffold43036 GLEAN mRNA 24277 27152 1 - . ID=CGI_10008493; scaffold1532 WUBlastX LTR_Ngaro 1134685 1135227 101 - . . scaffold1532 GLEAN mRNA 1127066 1152811 0.992288 + . ID=CGI_10028283; scaffold394 WUBlastX DNA_Harbinger 492981 493127 62 + . . scaffold394 GLEAN mRNA 488659 515899 0.813951 - . ID=CGI_10022088; scaffold394 WUBlastX DNA_Harbinger 493368 493526 48 + . . scaffold394 GLEAN mRNA 488659 515899 0.813951 - . ID=CGI_10022088; scaffold292 WUBlastX DNA_TcMar-Marin 37904 38086 28 + . . scaffold292 GLEAN mRNA 29262 46507 0.999144 + . ID=CGI_10003527; scaffold459 WUBlastX DNA_Merlin 51159 51431 128 - . . scaffold459 GLEAN mRNA 48177 82844 0.45554 + . ID=CGI_10018167; scaffold1009 WUBlastX LINE_RTE-X 1225840 1226142 111 - . . scaffold1009 GLEAN mRNA 1197147 1238817 0.350484 + . ID=CGI_10028788; scaffold94 WUBlastX DNA_hAT-Blackja 119729 120112 58 + . . scaffold94 GLEAN mRNA 111860 132138 0.804225 + . ID=CGI_10013913; scaffold38374 WUBlastX LTR_Gypsy-Cigr 14792 15484 209 + . . scaffold38374 GLEAN mRNA 8302 17987 0.957619 + . ID=CGI_10002746; scaffold664 WUBlastX DNA_Sola 215463 216107 145 + . . scaffold664 GLEAN mRNA 213415 231457 0.897817 + . ID=CGI_10021440; scaffold36 WUBlastX LTR_Gypsy 5546 6976 408 + . . scaffold36 GLEAN mRNA 2519 8438 0.614104 + . ID=CGI_10001028; scaffold85 WUBlastX LINE_L2 617470 618390 563 - . . scaffold85 GLEAN mRNA 611975 636254 1 - . ID=CGI_10020719; scaffold695 WUBlastX LINE_L1 715010 715111 26 + . . scaffold695 GLEAN mRNA 705983 727911 0.988963 - . ID=CGI_10023304; scaffold695 WUBlastX LINE_L1 90554 90781 57 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold896 WUBlastX LINE_L1-Tx1 47541 47795 40 + . . scaffold896 GLEAN mRNA 45378 49645 0.962391 - . ID=CGI_10022830; scaffold43782 WUBlastX LINE_R2 112588 112815 36 - . . scaffold43782 GLEAN mRNA 102494 129639 0.999947 + . ID=CGI_10012366; scaffold40208 WUBlastX LINE_RTE-X 84498 85040 99 + . . scaffold40208 GLEAN mRNA 72712 87059 0.842413 + . ID=CGI_10003956; scaffold1189 WUBlastX LINE_RTE-X 774153 774281 38 - . . scaffold1189 GLEAN mRNA 763568 774596 0.392072 + . ID=CGI_10023832; scaffold358 WUBlastX LINE_RTE-X 137155 137307 68 + . . scaffold358 GLEAN mRNA 127311 138997 0.861912 - . ID=CGI_10013024; scaffold1448 WUBlastX LTR_Ngaro 30141 30833 441 - . . scaffold1448 GLEAN mRNA 28289 31614 0.624176 - . ID=CGI_10011853; scaffold1448 WUBlastX LTR_Ngaro 30819 31421 470 - . . scaffold1448 GLEAN mRNA 28289 31614 0.624176 - . ID=CGI_10011853; scaffold36794 WUBlastX LTR_Ngaro 6054 7679 1037 + . . scaffold36794 GLEAN mRNA 3731 8474 0.499919 + . ID=CGI_10002119; scaffold753 WUBlastX LINE_CR1 51984 52337 154 + . . scaffold753 GLEAN mRNA 36571 68340 0.958809 + . ID=CGI_10014195; scaffold1476 WUBlastX LINE_CR1-L2 170899 171075 20 + . . scaffold1476 GLEAN mRNA 169615 179488 0.862141 + . ID=CGI_10009826; scaffold1260 WUBlastX DNA_Academ 101529 101876 27 - . . scaffold1260 GLEAN mRNA 101391 106059 0.529962 - . ID=CGI_10005944; scaffold1260 WUBlastX DNA_Academ 101529 101876 27 - . . scaffold1260 GLEAN mRNA 97154 106777 1 + . ID=CGI_10005943; scaffold1866 WUBlastX LINE_CR1 225114 225218 29 + . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold1350 WUBlastX LTR_Ngaro 110016 110396 45 - . . scaffold1350 GLEAN mRNA 92477 120800 0.694726 - . ID=CGI_10017297; scaffold451 WUBlastX LTR_Gypsy 64759 66339 1022 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold451 WUBlastX LTR_Gypsy 66854 67153 120 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold40 WUBlastX DNA_Academ 255655 257373 533 - . . scaffold40 GLEAN mRNA 252666 257460 0.323172 - . ID=CGI_10015106; scaffold313 WUBlastX DNA_En-Spm 614440 614646 67 - . . scaffold313 GLEAN mRNA 612366 622273 0.647784 - . ID=CGI_10026614; scaffold392 WUBlastX DNA_Kolobok 895732 896061 94 + . . scaffold392 GLEAN mRNA 895046 896088 1 + . ID=CGI_10024238; scaffold502 WUBlastX LINE_Penelope 279315 280328 26 - . . scaffold502 GLEAN mRNA 265921 292012 0.339102 + . ID=CGI_10024318; scaffold502 WUBlastX LINE_Penelope 280349 280522 28 - . . scaffold502 GLEAN mRNA 265921 292012 0.339102 + . ID=CGI_10024318; scaffold41174 WUBlastX LINE_RTE-X 61484 62086 103 + . . scaffold41174 GLEAN mRNA 37943 88980 0.479824 - . ID=CGI_10004794; scaffold751 WUBlastX LINE_RTE-X 246410 247060 68 + . . scaffold751 GLEAN mRNA 235635 247422 0.327254 - . ID=CGI_10017389; scaffold753 WUBlastX LINE_RTE-X 313191 316439 986 - . . scaffold753 GLEAN mRNA 307757 329663 0.499275 + . ID=CGI_10014210; scaffold599 WUBlastX LTR_Ngaro 32261 32392 110 - . . scaffold599 GLEAN mRNA 29083 62122 0.696781 + . ID=CGI_10021706; scaffold40440 WUBlastX LTR_Gypsy-Cigr 34274 35053 166 - . . scaffold40440 GLEAN mRNA 16484 36402 0.811713 + . ID=CGI_10004142; scaffold847 WUBlastX LTR_Gypsy 597422 598033 203 - . . scaffold847 GLEAN mRNA 588396 606136 0.840326 - . ID=CGI_10022283; scaffold1749 WUBlastX LINE_RTE-X 173784 174224 65 - . . scaffold1749 GLEAN mRNA 168130 177487 0.428785 + . ID=CGI_10008260; scaffold41816 WUBlastX LINE_RTE-X 85874 86014 38 - . . scaffold41816 GLEAN mRNA 84334 89370 0.999542 + . ID=CGI_10005649; scaffold1119 WUBlastX DNA_TcMar-Tc2 162470 163117 194 - . . scaffold1119 GLEAN mRNA 141381 182559 0.993006 - . ID=CGI_10009605; scaffold42890 WUBlastX LTR_Gypsy 80297 81070 402 - . . scaffold42890 GLEAN mRNA 76174 91402 0.99612 + . ID=CGI_10008039; scaffold1186 WUBlastX LTR_Gypsy 212019 212528 300 + . . scaffold1186 GLEAN mRNA 187396 222353 0.578632 + . ID=CGI_10010597; scaffold756 WUBlastX LINE_L2 421292 421531 32 - . . scaffold756 GLEAN mRNA 412445 424957 0.468321 - . ID=CGI_10016466; scaffold756 WUBlastX LINE_L2 421536 422210 308 - . . scaffold756 GLEAN mRNA 412445 424957 0.468321 - . ID=CGI_10016466; scaffold756 WUBlastX LINE_L2 422207 422722 313 - . . scaffold756 GLEAN mRNA 412445 424957 0.468321 - . ID=CGI_10016466; scaffold756 WUBlastX LINE_L2 422676 423317 373 - . . scaffold756 GLEAN mRNA 412445 424957 0.468321 - . ID=CGI_10016466; scaffold756 WUBlastX LINE_L2 423338 423742 143 - . . scaffold756 GLEAN mRNA 412445 424957 0.468321 - . ID=CGI_10016466; scaffold1896 WUBlastX LINE_L2 150167 150664 128 - . . scaffold1896 GLEAN mRNA 122415 155765 0.274309 - . ID=CGI_10019635; scaffold1104 WUBlastX DNA_Kolobok-IS4 526370 526582 71 - . . scaffold1104 GLEAN mRNA 524853 533185 0.523865 + . ID=CGI_10020392; scaffold1104 WUBlastX DNA_Kolobok-IS4 526370 526582 71 - . . scaffold1104 GLEAN mRNA 502059 528268 0.99448 - . ID=CGI_10020391; scaffold365 WUBlastX DNA_Kolobok 285656 285739 32 + . . scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; scaffold3 WUBlastX LTR_Ngaro 948886 949593 185 + . . scaffold3 GLEAN mRNA 946459 958838 0.555132 + . ID=CGI_10027316; scaffold271 WUBlastX LINE_RTE-X 831686 832177 183 - . . scaffold271 GLEAN mRNA 809860 849502 0.997113 - . ID=CGI_10024500; scaffold40960 WUBlastX LINE_RTE-X 6950 7279 162 - . . scaffold40960 GLEAN mRNA 4964 19748 0.995292 - . ID=CGI_10004560; scaffold35180 WUBlastX LINE_L1-Tx1 17169 18098 150 - . . scaffold35180 GLEAN mRNA 904 21932 0.992496 - . ID=CGI_10001433; scaffold37900 WUBlastX DNA_IS4EU 30711 31661 131 - . . scaffold37900 GLEAN mRNA 13260 48286 0.694403 - . ID=CGI_10002507; scaffold601 WUBlastX LINE_RTE-BovB 600548 602230 1551 + . . scaffold601 GLEAN mRNA 586023 611758 0.912594 - . ID=CGI_10026838; scaffold804 WUBlastX LTR_Gypsy 166894 167334 348 - . . scaffold804 GLEAN mRNA 160406 170673 0.986312 - . ID=CGI_10014856; scaffold804 WUBlastX LTR_Gypsy 167367 167933 296 - . . scaffold804 GLEAN mRNA 160406 170673 0.986312 - . ID=CGI_10014856; scaffold38532 WUBlastX LTR_Ngaro 55174 55320 28 - . . scaffold38532 GLEAN mRNA 48785 56819 0.999998 - . ID=CGI_10002832; scaffold43664 WUBlastX LINE_RTE-X 213981 214649 136 + . . scaffold43664 GLEAN mRNA 204407 215793 0.656307 - . ID=CGI_10011717; scaffold39212 WUBlastX DNA_Sola 45469 45954 213 - . . scaffold39212 GLEAN mRNA 30679 56961 0.415387 - . ID=CGI_10003233; scaffold1301 WUBlastX LTR_Ngaro 316598 317287 142 + . . scaffold1301 GLEAN mRNA 311038 320027 0.984699 - . ID=CGI_10027714; scaffold1301 WUBlastX LTR_Pao 625536 625952 252 - . . scaffold1301 GLEAN mRNA 619345 669752 0.288547 + . ID=CGI_10027735; scaffold42840 WUBlastX LINE_L2 188273 188380 70 + . . scaffold42840 GLEAN mRNA 176465 192129 0.833079 - . ID=CGI_10007840; scaffold522 WUBlastX LTR_Gypsy 557542 557715 40 - . . scaffold522 GLEAN mRNA 555460 561290 0.999999 + . ID=CGI_10020338; scaffold1247 WUBlastX DNA_TcMar-Tc1 113688 113966 39 + . . scaffold1247 GLEAN mRNA 96036 115392 0.95838 - . ID=CGI_10008945; scaffold398 WUBlastX LINE_CR1-L2 3457 3918 156 - . . scaffold398 GLEAN mRNA 896 15325 0.911211 + . ID=CGI_10004360; scaffold707 WUBlastX DNA_Harbinger 49201 49659 107 - . . scaffold707 GLEAN mRNA 28186 50322 0.998251 + . ID=CGI_10007721; scaffold535 WUBlastX LINE_CR1-L2 565767 566633 75 + . . scaffold535 GLEAN mRNA 563508 572309 0.883286 + . ID=CGI_10020301; scaffold31 WUBlastX DNA_TcMar-Tc1 180763 181167 88 - . . scaffold31 GLEAN mRNA 167305 183497 0.965717 + . ID=CGI_10013560; scaffold31 WUBlastX DNA_TcMar-Tc1 181135 181413 43 - . . scaffold31 GLEAN mRNA 167305 183497 0.965717 + . ID=CGI_10013560; scaffold456 WUBlastX LTR_Gypsy 140570 140617 24 + . . scaffold456 GLEAN mRNA 102025 155096 0.577611 + . ID=CGI_10006863; scaffold852 WUBlastX LTR_Ngaro 169586 170152 172 - . . scaffold852 GLEAN mRNA 154892 173695 0.933872 + . ID=CGI_10012040; scaffold1054 WUBlastX DNA_IS4EU 279694 279903 43 - . . scaffold1054 GLEAN mRNA 264440 285046 0.889923 + . ID=CGI_10012963; scaffold1054 WUBlastX DNA_IS4EU 279694 279903 43 - . . scaffold1054 GLEAN mRNA 274617 283441 0.999237 - . ID=CGI_10012964; scaffold38626 WUBlastX LINE_CR1 27592 27912 145 - . . scaffold38626 GLEAN mRNA 19577 33145 1 - . ID=CGI_10002868; scaffold1087 WUBlastX LTR_Gypsy 11230 11994 265 + . . scaffold1087 GLEAN mRNA 1458 16224 0.544547 + . ID=CGI_10001183; scaffold425 WUBlastX DNA_IS4EU 135792 135953 29 + . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold1503 WUBlastX DNA_TcMar-Tc1 57003 57263 164 - . . scaffold1503 GLEAN mRNA 55967 67698 1 + . ID=CGI_10009528; scaffold1698 WUBlastX LINE_RTE-X 555188 556096 57 + . . scaffold1698 GLEAN mRNA 555176 595908 0.182915 - . ID=CGI_10019393; scaffold1698 WUBlastX LINE_RTE-X 556465 556584 22 + . . scaffold1698 GLEAN mRNA 555176 595908 0.182915 - . ID=CGI_10019393; scaffold1698 WUBlastX LINE_RTE-X 556620 556757 43 + . . scaffold1698 GLEAN mRNA 555176 595908 0.182915 - . ID=CGI_10019393; scaffold1698 WUBlastX LINE_RTE-X 556772 557020 27 + . . scaffold1698 GLEAN mRNA 555176 595908 0.182915 - . ID=CGI_10019393; scaffold40744 WUBlastX LINE_L1-Tx1 91092 91934 82 + . . scaffold40744 GLEAN mRNA 90916 94422 0.882871 + . ID=CGI_10004380; scaffold1885 WUBlastX LINE_L1-Tx1 364710 365627 124 + . . scaffold1885 GLEAN mRNA 350853 371060 0.999501 + . ID=CGI_10013905; scaffold481 WUBlastX LINE_L2 1216164 1216901 173 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold1209 WUBlastX DNA_En-Spm 112071 112589 250 + . . scaffold1209 GLEAN mRNA 106847 123923 0.38603 - . ID=CGI_10007967; scaffold40134 WUBlastX LINE_RTE-X 70083 70562 55 + . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold1788 WUBlastX LINE_L1-Tx1 50595 50819 95 + . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold596 WUBlastX DNA_TcMar-Tc1 213833 214309 200 - . . scaffold596 GLEAN mRNA 209515 220415 0.999343 + . ID=CGI_10009578; scaffold783 WUBlastX LTR_Pao 274069 274434 27 - . . scaffold783 GLEAN mRNA 271175 288350 0.999949 + . ID=CGI_10011687; scaffold1001 WUBlastX LINE_L2 26698 27627 239 + . . scaffold1001 GLEAN mRNA 4766 38685 0.672255 - . ID=CGI_10007116; scaffold632 WUBlastX LINE_L2 511258 511317 22 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold828 WUBlastX DNA_TcMar-Fot1 171714 172358 199 - . . scaffold828 GLEAN mRNA 167866 174886 0.999415 - . ID=CGI_10007370; scaffold1322 WUBlastX LINE_RTE-BovB 368649 368735 48 - . . scaffold1322 GLEAN mRNA 366517 374727 0.833191 + . ID=CGI_10019476; scaffold36790 WUBlastX LTR_Ngaro 26004 26495 177 + . . scaffold36790 GLEAN mRNA 14645 35591 0.936014 - . ID=CGI_10002141; scaffold453 WUBlastX LTR_Gypsy 304792 304971 39 + . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold760 WUBlastX LTR_Gypsy-Cigr 799116 799787 261 - . . scaffold760 GLEAN mRNA 798582 806606 0.999169 - . ID=CGI_10024013; scaffold41452 WUBlastX LINE_L2 63164 63433 166 + . . scaffold41452 GLEAN mRNA 56340 65838 0.524499 + . ID=CGI_10005081; scaffold288 WUBlastX LINE_L1-Tx1 209609 209719 60 - . . scaffold288 GLEAN mRNA 165543 215886 0.392804 - . ID=CGI_10020660; scaffold189 WUBlastX LTR_Gypsy 37230 37436 85 - . . scaffold189 GLEAN mRNA 16396 38520 0.48054 + . ID=CGI_10018663; scaffold292 WUBlastX DNA_TcMar-Marin 37402 37758 171 + . . scaffold292 GLEAN mRNA 29262 46507 0.999144 + . ID=CGI_10003527; scaffold1062 WUBlastX LINE_CR1 9104 9529 129 + . . scaffold1062 GLEAN mRNA 7819 14088 0.462682 - . ID=CGI_10005737; scaffold42348 WUBlastX LINE_RTE-X 101640 101801 70 - . . scaffold42348 GLEAN mRNA 96568 107151 0.643244 - . ID=CGI_10006683; scaffold1532 WUBlastX LTR_Gypsy 391970 392923 358 + . . scaffold1532 GLEAN mRNA 391874 403369 0.462643 + . ID=CGI_10028249; scaffold522 WUBlastX LTR_Gypsy 556642 556986 172 - . . scaffold522 GLEAN mRNA 555460 561290 0.999999 + . ID=CGI_10020338; scaffold226 WUBlastX LTR_Gypsy 921398 921721 173 + . . scaffold226 GLEAN mRNA 913200 931789 0.655497 - . ID=CGI_10025388; scaffold481 WUBlastX DNA_IS4EU 1223253 1224059 359 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold1599 WUBlastX DNA_IS4EU 559400 560143 343 - . . scaffold1599 GLEAN mRNA 554525 590190 0.924419 + . ID=CGI_10027152; scaffold1154 WUBlastX LTR_Ngaro 368480 368851 108 + . . scaffold1154 GLEAN mRNA 360464 375818 0.544657 - . ID=CGI_10026164; scaffold1154 WUBlastX LTR_Ngaro 368480 368851 108 + . . scaffold1154 GLEAN mRNA 365982 369978 0.558383 + . ID=CGI_10026165; scaffold1785 WUBlastX LINE_RTE-X 22792 23715 162 + . . scaffold1785 GLEAN mRNA 6322 29997 0.294917 - . ID=CGI_10024349; scaffold39972 WUBlastX LTR_Gypsy 52567 52959 194 - . . scaffold39972 GLEAN mRNA 49348 55126 0.885383 + . ID=CGI_10003709; scaffold39972 WUBlastX LTR_Gypsy 53536 53775 155 - . . scaffold39972 GLEAN mRNA 49348 55126 0.885383 + . ID=CGI_10003709; scaffold42656 WUBlastX LINE_L1-Tx1 100474 101340 70 + . . scaffold42656 GLEAN mRNA 97324 103656 1 - . ID=CGI_10007415; scaffold1518 WUBlastX LTR_Ngaro 268905 269555 205 - . . scaffold1518 GLEAN mRNA 258241 287104 0.241996 + . ID=CGI_10017803; scaffold754 WUBlastX DNA_Academ 35415 36332 374 + . . scaffold754 GLEAN mRNA 34463 47005 0.401358 + . ID=CGI_10014062; scaffold583 WUBlastX LINE_CR1 745405 746562 216 - . . scaffold583 GLEAN mRNA 741499 750992 0.999674 - . ID=CGI_10023643; scaffold583 WUBlastX LINE_CR1 745405 746562 216 - . . scaffold583 GLEAN mRNA 742000 755299 0.5 + . ID=CGI_10023644; scaffold1283 WUBlastX LINE_RTE-X 39210 39647 50 + . . scaffold1283 GLEAN mRNA 32464 43957 1 + . ID=CGI_10011783; scaffold847 WUBlastX RC_Helitron 436989 437846 97 - . . scaffold847 GLEAN mRNA 435807 447835 0.572478 + . ID=CGI_10022278; scaffold942 WUBlastX DNA_TcMar-Tc1 396811 397032 117 + . . scaffold942 GLEAN mRNA 390660 406366 0.734087 - . ID=CGI_10019170; scaffold905 WUBlastX LINE_L1-Tx1 4527 4946 83 + . . scaffold905 GLEAN mRNA 3174 14725 0.840832 + . ID=CGI_10004338; scaffold1097 WUBlastX LTR_Gypsy-Cigr 862480 863040 137 + . . scaffold1097 GLEAN mRNA 848149 863853 0.999116 + . ID=CGI_10024555; scaffold140 WUBlastX LINE_L1-Tx1 73034 74011 258 + . . scaffold140 GLEAN mRNA 45423 78027 0.362757 - . ID=CGI_10020123; scaffold140 WUBlastX LINE_L1-Tx1 74133 74609 73 + . . scaffold140 GLEAN mRNA 45423 78027 0.362757 - . ID=CGI_10020123; scaffold760 WUBlastX LINE_L1 131022 131063 22 + . . scaffold760 GLEAN mRNA 117770 147032 0.706686 + . ID=CGI_10023976; scaffold1670 WUBlastX LINE_L1-Tx1 464476 465363 133 - . . scaffold1670 GLEAN mRNA 448842 475285 0.99939 + . ID=CGI_10017627; scaffold1670 WUBlastX LINE_L1-Tx1 465338 465586 135 - . . scaffold1670 GLEAN mRNA 448842 475285 0.99939 + . ID=CGI_10017627; scaffold43064 WUBlastX LINE_RTE-X 19461 20441 440 - . . scaffold43064 GLEAN mRNA 2241 22972 0.292417 + . ID=CGI_10008625; scaffold1440 WUBlastX LTR_Pao 39282 40409 506 + . . scaffold1440 GLEAN mRNA 38192 43331 1 - . ID=CGI_10008353; scaffold1171 WUBlastX LINE_L1-Tx1 12481 12726 98 + . . scaffold1171 GLEAN mRNA 12089 17698 0.989581 + . ID=CGI_10002857; scaffold1578 WUBlastX LTR_Pao 66072 66479 328 + . . scaffold1578 GLEAN mRNA 44226 72498 0.998909 - . ID=CGI_10008160; scaffold1578 WUBlastX LTR_Pao 67321 67578 220 + . . scaffold1578 GLEAN mRNA 44226 72498 0.998909 - . ID=CGI_10008160; scaffold433 WUBlastX DNA_TcMar-Tc1 309718 310719 424 + . . scaffold433 GLEAN mRNA 299282 312708 0.991068 + . ID=CGI_10027062; scaffold317 WUBlastX DNA_hAT-hATw 136804 138024 362 + . . scaffold317 GLEAN mRNA 123249 146317 0.852803 + . ID=CGI_10019345; scaffold1032 WUBlastX LINE_RTE-X 707814 708164 157 + . . scaffold1032 GLEAN mRNA 707458 710864 0.590104 - . ID=CGI_10021705; scaffold1799 WUBlastX LTR_Ngaro 58956 59066 76 - . . scaffold1799 GLEAN mRNA 46929 66946 0.999949 - . ID=CGI_10003631; scaffold804 WUBlastX LTR_Gypsy 167352 167408 23 - . . scaffold804 GLEAN mRNA 160406 170673 0.986312 - . ID=CGI_10014856; scaffold1237 WUBlastX LTR_Gypsy 224046 225794 291 - . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold22 WUBlastX LTR_Pao 1073448 1073597 51 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1073807 1073998 154 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold38130 WUBlastX DNA_Maverick 32847 33005 24 - . . scaffold38130 GLEAN mRNA 32205 35051 0.988307 - . ID=CGI_10002637; scaffold925 WUBlastX DNA_Sola 280620 280835 85 + . . scaffold925 GLEAN mRNA 265784 299058 0.996279 - . ID=CGI_10017423; scaffold925 WUBlastX DNA_Sola 281938 282513 342 + . . scaffold925 GLEAN mRNA 265784 299058 0.996279 - . ID=CGI_10017423; scaffold925 WUBlastX DNA_Sola 283613 284236 163 + . . scaffold925 GLEAN mRNA 265784 299058 0.996279 - . ID=CGI_10017423; scaffold41732 WUBlastX LINE_RTE-X 57906 58424 303 - . . scaffold41732 GLEAN mRNA 19646 61723 0.444801 - . ID=CGI_10005478; scaffold22 WUBlastX LTR_Pao 1074783 1074995 83 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold1484 WUBlastX LTR_Ngaro 108110 108457 202 - . . scaffold1484 GLEAN mRNA 103851 118273 0.818682 - . ID=CGI_10013260; scaffold1484 WUBlastX LTR_Ngaro 108450 108716 170 - . . scaffold1484 GLEAN mRNA 103851 118273 0.818682 - . ID=CGI_10013260; scaffold206 WUBlastX LTR_Gypsy 80238 81962 710 + . . scaffold206 GLEAN mRNA 57948 87960 0.702119 + . ID=CGI_10011372; scaffold1096 WUBlastX LTR_Gypsy 66561 67166 525 - . . scaffold1096 GLEAN mRNA 61473 82912 0.788854 + . ID=CGI_10006453; scaffold1096 WUBlastX LTR_Gypsy 67166 67405 102 - . . scaffold1096 GLEAN mRNA 61473 82912 0.788854 + . ID=CGI_10006453; scaffold1096 WUBlastX LTR_Gypsy 68116 68997 157 - . . scaffold1096 GLEAN mRNA 61473 82912 0.788854 + . ID=CGI_10006453; scaffold469 WUBlastX LTR_Pao 621095 621472 317 - . . scaffold469 GLEAN mRNA 620008 639653 0.99956 + . ID=CGI_10024690; scaffold38292 WUBlastX LTR_Ngaro 34942 35952 521 - . . scaffold38292 GLEAN mRNA 26899 37380 0.771739 - . ID=CGI_10002691; scaffold38292 WUBlastX LTR_Ngaro 35916 36203 171 - . . scaffold38292 GLEAN mRNA 26899 37380 0.771739 - . ID=CGI_10002691; scaffold43552 WUBlastX LTR_Gypsy 221461 222729 373 - . . scaffold43552 GLEAN mRNA 204428 227902 0.829194 - . ID=CGI_10011023; scaffold54 WUBlastX LTR_Gypsy 81217 81615 137 + . . scaffold54 GLEAN mRNA 79485 84388 0.939929 + . ID=CGI_10023654; scaffold271 WUBlastX DNA_Academ 189203 189841 23 - . . scaffold271 GLEAN mRNA 188870 219899 0.29689 - . ID=CGI_10024460; scaffold1401 WUBlastX LINE_RTE-X 5468 6031 47 - . . scaffold1401 GLEAN mRNA 431 6619 0.997038 - . ID=CGI_10001278; scaffold1817 WUBlastX LTR_Gypsy 24829 25320 76 + . . scaffold1817 GLEAN mRNA 9897 44966 0.453567 - . ID=CGI_10005250; scaffold621 WUBlastX DNA_Academ 316556 316813 177 - . . scaffold621 GLEAN mRNA 265576 316930 0.261056 - . ID=CGI_10017677; scaffold625 WUBlastX LINE_CR1-L2 600761 601024 64 - . . scaffold625 GLEAN mRNA 587493 614849 0.872449 - . ID=CGI_10023425; scaffold625 WUBlastX LINE_CR1-L2 600761 601024 64 - . . scaffold625 GLEAN mRNA 593175 626759 0.878872 + . ID=CGI_10023426; scaffold39470 WUBlastX LTR_Ngaro 21186 22754 783 - . . scaffold39470 GLEAN mRNA 18519 32880 0.998788 - . ID=CGI_10003379; scaffold756 WUBlastX LTR_Gypsy 353249 353437 771 - . . scaffold756 GLEAN mRNA 341736 353437 0.789635 - . ID=CGI_10016464; C26320 WUBlastX LINE_L2 2740 2964 75 + . . C26320 GLEAN mRNA 2740 3018 0.481188 + . ID=CGI_10000297; scaffold1698 WUBlastX LINE_CR1-L2 122879 123010 69 + . . scaffold1698 GLEAN mRNA 115530 127809 0.999999 + . ID=CGI_10019370; scaffold1301 WUBlastX DNA_hAT 63914 64168 66 - . . scaffold1301 GLEAN mRNA 63902 64216 0.618186 - . ID=CGI_10027703; scaffold1017 WUBlastX LINE_L2 472544 472610 62 + . . scaffold1017 GLEAN mRNA 472107 472610 0.618241 + . ID=CGI_10025009; C35532 WUBlastX LTR_Ngaro 15036 15524 34 - . . C35532 GLEAN mRNA 11931 21500 0.999947 - . ID=CGI_10001547; scaffold70 WUBlastX LINE_L2 612710 613189 51 + . . scaffold70 GLEAN mRNA 605933 624830 0.814164 - . ID=CGI_10024778; scaffold42584 WUBlastX LINE_L2 100558 100734 84 + . . scaffold42584 GLEAN mRNA 87388 105090 0.998677 + . ID=CGI_10007309; scaffold1021 WUBlastX LTR_Gypsy 455368 455853 28 - . . scaffold1021 GLEAN mRNA 448242 473584 0.324995 - . ID=CGI_10022500; scaffold809 WUBlastX LTR_Gypsy 121558 121674 66 + . . scaffold809 GLEAN mRNA 120032 128741 0.553857 + . ID=CGI_10006493; scaffold35406 WUBlastX LTR_Gypsy 9833 10459 58 - . . scaffold35406 GLEAN mRNA 1505 18996 0.688101 - . ID=CGI_10001499; scaffold577 WUBlastX DNA_hAT-Blackja 148512 148793 68 + . . scaffold577 GLEAN mRNA 118575 184181 0.72743 - . ID=CGI_10009918; scaffold44008 WUBlastX DNA_hAT-Tip100 353896 354204 47 + . . scaffold44008 GLEAN mRNA 353787 363820 0.499838 + . ID=CGI_10015300; scaffold41162 WUBlastX DNA_IS4EU 70872 71267 76 + . . scaffold41162 GLEAN mRNA 69250 72340 0.651134 + . ID=CGI_10004776; scaffold43932 WUBlastX LTR_Gypsy 313620 313973 21 + . . scaffold43932 GLEAN mRNA 302308 316124 0.99992 + . ID=CGI_10014126; scaffold695 WUBlastX DNA_Harbinger 8541 8759 69 - . . scaffold695 GLEAN mRNA 4125 9096 0.716645 + . ID=CGI_10023266; scaffold1209 WUBlastX DNA_MuDR 121094 121453 58 - . . scaffold1209 GLEAN mRNA 106847 123923 0.38603 - . ID=CGI_10007967; scaffold1194 WUBlastX LINE_R1 3386 3466 23 - . . scaffold1194 GLEAN mRNA 3134 3478 0.999661 - . ID=CGI_10001327; scaffold42124 WUBlastX DNA_MuDR 42762 42965 74 - . . scaffold42124 GLEAN mRNA 33717 47543 0.69411 + . ID=CGI_10006230; scaffold1140 WUBlastX DNA_TcMar-Fot1 11544 11675 49 + . . scaffold1140 GLEAN mRNA 11544 14792 0.943975 - . ID=CGI_10001241; scaffold156 WUBlastX DNA_Kolobok-Hyd 688119 688724 52 - . . scaffold156 GLEAN mRNA 669682 693584 0.721042 - . ID=CGI_10026516; scaffold482 WUBlastX DNA_Kolobok-Hyd 42374 43417 36 + . . scaffold482 GLEAN mRNA 41454 43438 0.427398 + . ID=CGI_10010992; scaffold121 WUBlastX LINE_L1 509649 510224 38 - . . scaffold121 GLEAN mRNA 504967 519244 0.995336 - . ID=CGI_10025657; scaffold140 WUBlastX LINE_CR1 345440 345625 61 - . . scaffold140 GLEAN mRNA 327930 353126 0.379108 + . ID=CGI_10020135; scaffold140 WUBlastX LINE_CR1 345440 345625 61 - . . scaffold140 GLEAN mRNA 344940 369951 0.671174 - . ID=CGI_10020136; scaffold35896 WUBlastX LINE_RTE-BovB 20487 20642 29 - . . scaffold35896 GLEAN mRNA 578 26444 0.497805 - . ID=CGI_10001642; scaffold1283 WUBlastX LINE_RTE-X 51684 51863 67 + . . scaffold1283 GLEAN mRNA 50365 61759 0.999936 - . ID=CGI_10011785; scaffold44054 WUBlastX LINE_RTE-X 307502 307654 75 - . . scaffold44054 GLEAN mRNA 306696 317315 0.999734 + . ID=CGI_10016171; scaffold41568 WUBlastX LINE_RTE-X 77737 77961 25 - . . scaffold41568 GLEAN mRNA 75182 91109 0.978007 + . ID=CGI_10005300; scaffold1084 WUBlastX LINE_RTE-X 199935 200384 47 + . . scaffold1084 GLEAN mRNA 199342 208474 0.831202 + . ID=CGI_10010080; scaffold1812 WUBlastX LINE_RTE-X 37326 37481 38 - . . scaffold1812 GLEAN mRNA 18505 39381 0.997673 - . ID=CGI_10004688; scaffold469 WUBlastX LINE_L1-Tx1 695312 695599 44 + . . scaffold469 GLEAN mRNA 673707 700737 0.794331 - . ID=CGI_10024692; scaffold1558 WUBlastX LINE_L1-Tx1 61497 61784 59 + . . scaffold1558 GLEAN mRNA 34398 73907 0.517269 - . ID=CGI_10004094; scaffold266 WUBlastX DNA_hAT 8800 9339 62 - . . scaffold266 GLEAN mRNA 8446 13085 0.992345 - . ID=CGI_10013345; scaffold43116 WUBlastX LTR_Gypsy 103888 104058 75 - . . scaffold43116 GLEAN mRNA 94034 106356 0.999676 - . ID=CGI_10008812; scaffold1869 WUBlastX LTR_Pao 19381 19797 39 - . . scaffold1869 GLEAN mRNA 8009 37015 0.526029 - . ID=CGI_10009011; scaffold38422 WUBlastX LINE_CR1 30422 30562 51 - . . scaffold38422 GLEAN mRNA 27073 31824 0.999996 - . ID=CGI_10002764; scaffold352 WUBlastX LINE_CR1-L2 156778 156879 34 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold596 WUBlastX LTR_Gypsy 209902 210126 88 + . . scaffold596 GLEAN mRNA 209515 220415 0.999343 + . ID=CGI_10009578; scaffold1066 WUBlastX DNA_Crypton 5987 6268 100 - . . scaffold1066 GLEAN mRNA 5431 6622 0.928703 - . ID=CGI_10012657; scaffold40440 WUBlastX LTR_Ngaro 54722 55012 34 + . . scaffold40440 GLEAN mRNA 51085 65707 0.320377 - . ID=CGI_10004144; scaffold392 WUBlastX LTR_Gypsy 36173 36241 30 - . . scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; scaffold37946 WUBlastX LTR_Gypsy 14131 14607 74 - . . scaffold37946 GLEAN mRNA 2025 20198 0.734311 + . ID=CGI_10002553; scaffold804 WUBlastX DNA_IS4EU 162168 162440 76 + . . scaffold804 GLEAN mRNA 160406 170673 0.986312 - . ID=CGI_10014856; scaffold772 WUBlastX DNA_hAT-Blackja 242463 242822 77 + . . scaffold772 GLEAN mRNA 238963 261048 0.714694 - . ID=CGI_10016587; scaffold1209 WUBlastX LINE_L1 20840 21403 65 - . . scaffold1209 GLEAN mRNA 16133 36287 0.961312 - . ID=CGI_10007964; scaffold102 WUBlastX LTR_Ngaro 643973 644050 57 + . . scaffold102 GLEAN mRNA 643973 666734 0.499984 + . ID=CGI_10028445; scaffold37732 WUBlastX DNA_MuDR 46413 46430 104 - . . scaffold37732 GLEAN mRNA 41329 46430 0.987958 + . ID=CGI_10002485; scaffold459 WUBlastX DNA_TcMar-Marin 137523 137852 60 - . . scaffold459 GLEAN mRNA 130507 139915 0.650578 - . ID=CGI_10018170; scaffold351 WUBlastX LTR_Pao 302245 302430 40 - . . scaffold351 GLEAN mRNA 298327 302475 0.747441 - . ID=CGI_10022603; scaffold1341 WUBlastX LINE_L2 22343 22594 57 - . . scaffold1341 GLEAN mRNA 4451 30218 0.992186 + . ID=CGI_10004662; scaffold591 WUBlastX LTR_Gypsy 224433 224468 88 - . . scaffold591 GLEAN mRNA 224175 224468 0.561606 - . ID=CGI_10027559; scaffold1741 WUBlastX LTR_Gypsy 144116 144352 107 + . . scaffold1741 GLEAN mRNA 144116 145129 0.999285 + . ID=CGI_10024025; scaffold1705 WUBlastX LTR_Gypsy 97738 98613 89 + . . scaffold1705 GLEAN mRNA 68885 100114 0.343232 + . ID=CGI_10007468; scaffold1373 WUBlastX DNA_hAT-Tip100 137435 137779 101 + . . scaffold1373 GLEAN mRNA 136954 137821 0.465822 + . ID=CGI_10007910; scaffold424 WUBlastX LTR_Gypsy 64445 64570 24 - . . scaffold424 GLEAN mRNA 46350 64570 0.999605 - . ID=CGI_10014352; scaffold514 WUBlastX LTR_Gypsy 471676 471915 53 + . . scaffold514 GLEAN mRNA 444665 473776 0.661186 - . ID=CGI_10018365; scaffold433 WUBlastX DNA_P 407737 408177 25 - . . scaffold433 GLEAN mRNA 407360 429733 0.877924 + . ID=CGI_10027068; scaffold833 WUBlastX LINE_Penelope 379607 379819 69 - . . scaffold833 GLEAN mRNA 336322 390734 0.191045 + . ID=CGI_10016744; scaffold150 WUBlastX DNA_Kolobok-Hyd 1215030 1215419 30 + . . scaffold150 GLEAN mRNA 1213916 1217122 0.630659 + . ID=CGI_10028662; scaffold150 WUBlastX DNA_Kolobok-Hyd 1215030 1215419 30 + . . scaffold150 GLEAN mRNA 1205286 1224549 1 - . ID=CGI_10028661; scaffold150 WUBlastX LINE_RTE-X 230932 231111 103 + . . scaffold150 GLEAN mRNA 224010 241607 0.593383 + . ID=CGI_10028591; scaffold150 WUBlastX LINE_RTE-X 230932 231111 103 + . . scaffold150 GLEAN mRNA 225439 237186 0.997933 - . ID=CGI_10028592; scaffold252 WUBlastX LINE_L1-Tx1 196469 196741 44 + . . scaffold252 GLEAN mRNA 193535 212637 0.650781 - . ID=CGI_10010768; scaffold102 WUBlastX LINE_RTE-BovB 1279126 1279314 50 + . . scaffold102 GLEAN mRNA 1269983 1282871 0.999387 - . ID=CGI_10028488; scaffold79 WUBlastX DNA_TcMar-IS885 873586 873705 22 - . . scaffold79 GLEAN mRNA 869143 880340 0.999287 - . ID=CGI_10024652; scaffold36450 WUBlastX LINE_CR1-L2 21416 21802 44 - . . scaffold36450 GLEAN mRNA 18407 33594 0.503687 - . ID=CGI_10001980; scaffold1650 WUBlastX LINE_CR1 113960 114583 41 - . . scaffold1650 GLEAN mRNA 102282 130606 0.781405 - . ID=CGI_10017772; scaffold1671 WUBlastX LINE_CR1 50590 50838 85 - . . scaffold1671 GLEAN mRNA 47958 55887 0.998077 + . ID=CGI_10015136; scaffold950 WUBlastX LINE_CR1 49178 49303 20 + . . scaffold950 GLEAN mRNA 45484 50998 0.326384 + . ID=CGI_10022918; scaffold541 WUBlastX LTR_Gypsy 62079 62138 21 + . . scaffold541 GLEAN mRNA 50245 65351 0.650911 - . ID=CGI_10022375; scaffold1143 WUBlastX DNA_IS4EU 123029 123154 32 - . . scaffold1143 GLEAN mRNA 121955 124624 0.796524 - . ID=CGI_10009141; scaffold1188 WUBlastX DNA_Kolobok 217203 217361 75 + . . scaffold1188 GLEAN mRNA 212895 226684 0.80625 + . ID=CGI_10025463; scaffold917 WUBlastX LINE_L2 162383 162568 46 + . . scaffold917 GLEAN mRNA 150992 179733 0.207364 - . ID=CGI_10011084; scaffold1603 WUBlastX DNA_P 58274 58828 32 - . . scaffold1603 GLEAN mRNA 44108 68236 0.999997 - . ID=CGI_10012816; scaffold1740 WUBlastX DNA_NOF? 251159 251458 71 - . . scaffold1740 GLEAN mRNA 247855 255968 0.985926 + . ID=CGI_10011450; scaffold70 WUBlastX LINE_RTE-X 612794 613168 80 + . . scaffold70 GLEAN mRNA 605933 624830 0.814164 - . ID=CGI_10024778; scaffold102 WUBlastX LINE_RTE-BovB 1278860 1279117 104 + . . scaffold102 GLEAN mRNA 1269983 1282871 0.999387 - . ID=CGI_10028488; C29438 WUBlastX LINE_RTE-X 2525 2809 73 + . . C29438 GLEAN mRNA 533 5889 1 + . ID=CGI_10000534; scaffold354 WUBlastX LINE_RTE-X 72809 73513 35 + . . scaffold354 GLEAN mRNA 46016 92159 0.140194 - . ID=CGI_10025696; scaffold43676 WUBlastX LINE_RTE-X 214766 215275 73 + . . scaffold43676 GLEAN mRNA 211597 216385 0.756935 + . ID=CGI_10011734; scaffold43522 WUBlastX LINE_RTE-X 92650 92922 62 + . . scaffold43522 GLEAN mRNA 83396 104526 0.999468 + . ID=CGI_10010551; scaffold713 WUBlastX LINE_RTE-X 452463 452639 86 + . . scaffold713 GLEAN mRNA 450558 455939 1 - . ID=CGI_10017762; scaffold1314 WUBlastX DNA_Sola 24488 25030 42 + . . scaffold1314 GLEAN mRNA 24248 26243 0.657792 + . ID=CGI_10009303; scaffold1849 WUBlastX LINE_L2 349432 349638 51 - . . scaffold1849 GLEAN mRNA 345198 370191 0.662499 + . ID=CGI_10015920; scaffold738 WUBlastX DNA_hAT-Tip100 1902 2183 98 + . . scaffold738 GLEAN mRNA 1336 4448 1 + . ID=CGI_10000540; scaffold1403 WUBlastX LTR_Pao 13766 14176 76 - . . scaffold1403 GLEAN mRNA 7932 14512 0.459466 - . ID=CGI_10020155; scaffold602 WUBlastX LTR_Gypsy 794008 794142 72 + . . scaffold602 GLEAN mRNA 781902 798568 0.814164 + . ID=CGI_10023204; scaffold172 WUBlastX LTR_Gypsy 15846 16010 69 + . . scaffold172 GLEAN mRNA 5002 17897 0.999274 - . ID=CGI_10013508; scaffold625 WUBlastX LTR_Gypsy 760829 761002 48 - . . scaffold625 GLEAN mRNA 750522 771270 0.999954 - . ID=CGI_10023437; scaffold678 WUBlastX LTR_Gypsy 815428 815622 25 + . . scaffold678 GLEAN mRNA 797592 830433 0.957761 + . ID=CGI_10026382; scaffold1892 WUBlastX DNA_hAT-hAT5 131498 132310 104 - . . scaffold1892 GLEAN mRNA 130400 134377 0.99506 - . ID=CGI_10011314; scaffold43842 WUBlastX DNA_IS4EU 249359 249526 35 + . . scaffold43842 GLEAN mRNA 222782 252762 0.997279 - . ID=CGI_10013106; scaffold43842 WUBlastX DNA_IS4EU 249359 249526 35 + . . scaffold43842 GLEAN mRNA 238630 263260 0.526049 + . ID=CGI_10013107; scaffold1080 WUBlastX DNA_TcMar-Tc2 149064 149240 82 + . . scaffold1080 GLEAN mRNA 148571 152000 0.995421 + . ID=CGI_10012673; scaffold1227 WUBlastX DNA_Kolobok-Hyd 210238 210393 21 + . . scaffold1227 GLEAN mRNA 209453 211287 0.982351 + . ID=CGI_10010056; scaffold1174 WUBlastX LINE_L1 38490 38582 20 - . . scaffold1174 GLEAN mRNA 34818 43941 1 - . ID=CGI_10026023; scaffold290 WUBlastX LINE_RTE-X 395086 395361 74 + . . scaffold290 GLEAN mRNA 393390 421679 0.99629 + . ID=CGI_10018549; scaffold36462 WUBlastX LINE_RTE-X 20265 20480 49 - . . scaffold36462 GLEAN mRNA 15214 26775 0.999351 - . ID=CGI_10001929; scaffold955 WUBlastX LINE_RTE-BovB 119290 119475 48 - . . scaffold955 GLEAN mRNA 102883 129964 0.99714 + . ID=CGI_10009853; scaffold952 WUBlastX LINE_L1-Tx1 25021 25602 42 + . . scaffold952 GLEAN mRNA 12544 26052 0.999676 + . ID=CGI_10002898; scaffold1195 WUBlastX DNA_Zator 59050 59223 54 + . . scaffold1195 GLEAN mRNA 50183 65282 0.996429 + . ID=CGI_10012094; scaffold1195 WUBlastX DNA_Zator 59486 59539 29 + . . scaffold1195 GLEAN mRNA 50183 65282 0.996429 + . ID=CGI_10012094; scaffold416 WUBlastX DNA_hAT 319866 320123 63 + . . scaffold416 GLEAN mRNA 319803 321497 0.999997 + . ID=CGI_10014748; scaffold416 WUBlastX DNA_hAT 320337 320816 47 + . . scaffold416 GLEAN mRNA 319803 321497 0.999997 + . ID=CGI_10014748; scaffold1260 WUBlastX DNA_Academ 101737 102108 77 - . . scaffold1260 GLEAN mRNA 101391 106059 0.529962 - . ID=CGI_10005944; scaffold1260 WUBlastX DNA_Academ 101737 102108 77 - . . scaffold1260 GLEAN mRNA 97154 106777 1 + . ID=CGI_10005943; scaffold1866 WUBlastX LINE_Rex-Babar 223802 223885 27 + . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold419 WUBlastX LINE_CR1 1269409 1269588 76 - . . scaffold419 GLEAN mRNA 1266298 1276946 0.922495 + . ID=CGI_10028402; scaffold1382 WUBlastX LTR_DIRS 232612 232866 88 - . . scaffold1382 GLEAN mRNA 229926 239669 0.88642 - . ID=CGI_10011181; scaffold760 WUBlastX LTR_Gypsy 800321 800650 68 - . . scaffold760 GLEAN mRNA 798582 806606 0.999169 - . ID=CGI_10024013; scaffold149 WUBlastX LINE_L1 191758 191988 21 + . . scaffold149 GLEAN mRNA 179199 193397 0.990232 - . ID=CGI_10025295; scaffold619 WUBlastX DNA_MuDR 874895 875068 20 - . . scaffold619 GLEAN mRNA 870805 880758 0.920529 - . ID=CGI_10025790; scaffold115 WUBlastX LINE_RTE-BovB 187695 187859 133 + . . scaffold115 GLEAN mRNA 184007 188317 0.994579 + . ID=CGI_10021383; scaffold422 WUBlastX LINE_RTE-X 186206 186307 39 - . . scaffold422 GLEAN mRNA 175950 190221 0.980281 + . ID=CGI_10018798; scaffold866 WUBlastX LINE_RTE-X 94615 95031 108 + . . scaffold866 GLEAN mRNA 85549 108844 0.993209 + . ID=CGI_10004749; scaffold116 WUBlastX LINE_RTE-X 212496 212747 109 + . . scaffold116 GLEAN mRNA 199454 222023 0.8905 - . ID=CGI_10009421; scaffold404 WUBlastX LTR_DIRS 318413 318616 75 + . . scaffold404 GLEAN mRNA 311425 335048 0.297334 - . ID=CGI_10013607; scaffold1715 WUBlastX LINE_L2 357291 357569 128 - . . scaffold1715 GLEAN mRNA 354777 364040 0.588766 - . ID=CGI_10019673; scaffold1322 WUBlastX LTR_Gypsy 270360 270824 123 + . . scaffold1322 GLEAN mRNA 265135 302274 0.499623 + . ID=CGI_10019472; scaffold1235 WUBlastX LTR_Gypsy 28457 29047 106 + . . scaffold1235 GLEAN mRNA 16837 34725 0.738057 - . ID=CGI_10011828; scaffold86 WUBlastX LINE_Penelope 244351 244728 118 - . . scaffold86 GLEAN mRNA 234944 244974 0.760974 - . ID=CGI_10028144; scaffold880 WUBlastX LINE_Penelope 91701 92423 60 + . . scaffold880 GLEAN mRNA 88452 95761 0.999285 + . ID=CGI_10022181; scaffold1315 WUBlastX LINE_Penelope 689035 689535 21 - . . scaffold1315 GLEAN mRNA 688539 696190 0.999948 - . ID=CGI_10021627; scaffold168 WUBlastX DNA_MuDR 178687 178815 50 - . . scaffold168 GLEAN mRNA 178276 183101 0.805771 - . ID=CGI_10025586; scaffold145 WUBlastX DNA_TcMar-Fot1 647423 647659 153 + . . scaffold145 GLEAN mRNA 640130 678599 0.569648 - . ID=CGI_10026560; scaffold1329 WUBlastX DNA_TcMar-m44 87479 87778 140 + . . scaffold1329 GLEAN mRNA 77218 94406 0.816606 - . ID=CGI_10015782; scaffold1053 WUBlastX LINE_RTE-X 328940 329182 54 + . . scaffold1053 GLEAN mRNA 299038 331134 0.830467 - . ID=CGI_10014298; scaffold290 WUBlastX LINE_RTE-X 58007 58351 70 + . . scaffold290 GLEAN mRNA 51430 74485 0.815504 + . ID=CGI_10018531; scaffold980 WUBlastX LINE_RTE-X 165599 165874 33 + . . scaffold980 GLEAN mRNA 163810 172327 0.499535 - . ID=CGI_10019213; scaffold1802 WUBlastX LINE_RTE-RTE 80256 80393 24 + . . scaffold1802 GLEAN mRNA 71908 80776 0.999761 + . ID=CGI_10007150; scaffold1221 WUBlastX DNA_Maverick 66662 67015 43 - . . scaffold1221 GLEAN mRNA 56411 69596 0.696179 + . ID=CGI_10019728; scaffold138 WUBlastX LINE_L1-Tx1 28047 28466 42 - . . scaffold138 GLEAN mRNA 800 34081 0.879441 + . ID=CGI_10008423; scaffold43182 WUBlastX DNA_TcMar-Tc1 99848 100144 65 + . . scaffold43182 GLEAN mRNA 97443 102816 0.800679 + . ID=CGI_10009200; scaffold40186 WUBlastX DNA_TcMar-Tc1 24810 25448 59 - . . scaffold40186 GLEAN mRNA 18331 26539 0.486093 - . ID=CGI_10003927; scaffold1260 WUBlastX DNA_Academ 101833 102240 134 - . . scaffold1260 GLEAN mRNA 101391 106059 0.529962 - . ID=CGI_10005944; scaffold1260 WUBlastX DNA_Academ 101833 102240 134 - . . scaffold1260 GLEAN mRNA 97154 106777 1 + . ID=CGI_10005943; scaffold34282 WUBlastX LINE_Rex-Babar 14267 14347 21 - . . scaffold34282 GLEAN mRNA 2734 14490 1 - . ID=CGI_10001256; scaffold37900 WUBlastX LINE_CR1 20436 20792 141 + . . scaffold37900 GLEAN mRNA 13260 48286 0.694403 - . ID=CGI_10002507; scaffold1647 WUBlastX DNA_En-Spm 161332 161817 134 + . . scaffold1647 GLEAN mRNA 157870 163808 0.957006 - . ID=CGI_10008141; scaffold1009 WUBlastX LTR_Gypsy 167534 168688 145 - . . scaffold1009 GLEAN mRNA 163164 171986 0.959931 - . ID=CGI_10028721; scaffold1866 WUBlastX LINE_L2 222811 223035 34 + . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold1 WUBlastX DNA_Harbinger 266781 266966 84 - . . scaffold1 GLEAN mRNA 264014 267684 0.995923 + . ID=CGI_10013474; scaffold1 WUBlastX DNA_Harbinger 266956 267198 32 - . . scaffold1 GLEAN mRNA 264014 267684 0.995923 + . ID=CGI_10013474; scaffold43008 WUBlastX LINE_RTE-X 4122 4568 48 + . . scaffold43008 GLEAN mRNA 2147 17942 0.982229 + . ID=CGI_10008457; scaffold138 WUBlastX LINE_RTE-X 86482 86679 41 - . . scaffold138 GLEAN mRNA 84559 99053 1 + . ID=CGI_10008428; scaffold1132 WUBlastX DNA_TcMar-Tc1 210084 210320 25 + . . scaffold1132 GLEAN mRNA 207782 231438 0.973884 - . ID=CGI_10023314; scaffold773 WUBlastX LINE_L2 151324 151680 113 + . . scaffold773 GLEAN mRNA 136190 154303 0.840493 - . ID=CGI_10011344; scaffold481 WUBlastX LINE_L2 1229090 1229233 41 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LINE_L2 1229452 1229664 94 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold336 WUBlastX LINE_CR1 216723 217247 77 - . . scaffold336 GLEAN mRNA 208327 217851 1 - . ID=CGI_10012569; scaffold976 WUBlastX LTR_Pao 46375 46992 147 - . . scaffold976 GLEAN mRNA 40652 60127 0.884558 - . ID=CGI_10014002; scaffold41014 WUBlastX DNA_Crypton 66386 66664 41 - . . scaffold41014 GLEAN mRNA 64146 100898 0.861197 - . ID=CGI_10004639; scaffold41014 WUBlastX DNA_Crypton 66742 66951 60 - . . scaffold41014 GLEAN mRNA 64146 100898 0.861197 - . ID=CGI_10004639; scaffold1445 WUBlastX LTR_Gypsy 215630 215926 39 - . . scaffold1445 GLEAN mRNA 215438 231778 0.644744 - . ID=CGI_10010374; scaffold154 WUBlastX DNA_Harbinger 56481 56666 25 - . . scaffold154 GLEAN mRNA 55540 66408 1 - . ID=CGI_10004833; scaffold154 WUBlastX DNA_Harbinger 57655 57795 40 - . . scaffold154 GLEAN mRNA 55540 66408 1 - . ID=CGI_10004833; scaffold39476 WUBlastX LTR_Gypsy 50125 50475 20 + . . scaffold39476 GLEAN mRNA 49505 51682 1 + . ID=CGI_10002876; scaffold1532 WUBlastX DNA_IS4EU 397883 397981 56 + . . scaffold1532 GLEAN mRNA 391874 403369 0.462643 + . ID=CGI_10028249; scaffold1172 WUBlastX DNA_Kolobok 135381 135518 73 + . . scaffold1172 GLEAN mRNA 130831 145007 0.99998 + . ID=CGI_10006909; scaffold102 WUBlastX LINE_RTE-X 971367 971495 69 - . . scaffold102 GLEAN mRNA 961541 993549 0.838657 - . ID=CGI_10028460; scaffold41448 WUBlastX LINE_RTE-X 26583 27035 97 + . . scaffold41448 GLEAN mRNA 25683 29439 0.999991 + . ID=CGI_10005061; scaffold1625 WUBlastX LINE_RTE-X 170269 170391 40 - . . scaffold1625 GLEAN mRNA 163230 175754 0.999993 - . ID=CGI_10007533; scaffold313 WUBlastX LINE_RTE-X 1188840 1189091 43 - . . scaffold313 GLEAN mRNA 1180096 1191800 0.492755 + . ID=CGI_10026643; scaffold896 WUBlastX LINE_L1-Tx1 47842 48237 85 + . . scaffold896 GLEAN mRNA 45378 49645 0.962391 - . ID=CGI_10022830; scaffold1750 WUBlastX LTR_Pao 561472 561603 20 - . . scaffold1750 GLEAN mRNA 560254 561945 0.999999 - . ID=CGI_10021498; scaffold1750 WUBlastX DNA_hAT 231704 231898 100 + . . scaffold1750 GLEAN mRNA 229777 232957 1 + . ID=CGI_10021476; scaffold1750 WUBlastX DNA_hAT 231704 231898 100 + . . scaffold1750 GLEAN mRNA 227209 235623 0.823116 - . ID=CGI_10021475; scaffold1616 WUBlastX LINE_L2 69901 70584 107 - . . scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; scaffold106 WUBlastX LTR_Gypsy 654740 654982 26 - . . scaffold106 GLEAN mRNA 650785 658770 0.999129 - . ID=CGI_10022052; scaffold1714 WUBlastX LINE_L2 312426 312605 37 - . . scaffold1714 GLEAN mRNA 306589 325335 0.999557 + . ID=CGI_10013680; scaffold1670 WUBlastX LTR_DIRS 456582 457040 141 + . . scaffold1670 GLEAN mRNA 448842 475285 0.99939 + . ID=CGI_10017627; scaffold58 WUBlastX DNA_IS4EU 396268 396789 174 + . . scaffold58 GLEAN mRNA 395705 399423 0.999985 - . ID=CGI_10023143; scaffold925 WUBlastX LTR_Gypsy 141622 142515 137 - . . scaffold925 GLEAN mRNA 124334 157225 0.393067 - . ID=CGI_10017412; scaffold43920 WUBlastX DNA_Kolobok 346880 347167 50 - . . scaffold43920 GLEAN mRNA 342007 379534 0.562069 - . ID=CGI_10014001; scaffold43520 WUBlastX DNA_Sola 264476 264847 122 + . . scaffold43520 GLEAN mRNA 260878 269535 0.911795 - . ID=CGI_10010725; scaffold85 WUBlastX LINE_L2 616593 617498 397 - . . scaffold85 GLEAN mRNA 611975 636254 1 - . ID=CGI_10020719; scaffold507 WUBlastX DNA_Academ 492046 492339 405 + . . scaffold507 GLEAN mRNA 492046 492426 0.51402 + . ID=CGI_10019104; scaffold968 WUBlastX LINE_RTE-X 114560 116770 765 + . . scaffold968 GLEAN mRNA 110087 120737 0.425641 + . ID=CGI_10006297; scaffold315 WUBlastX DNA_Harbinger 427034 427657 567 + . . scaffold315 GLEAN mRNA 427034 448129 0.999057 + . ID=CGI_10020426; scaffold315 WUBlastX DNA_Harbinger 427821 428171 262 + . . scaffold315 GLEAN mRNA 427034 448129 0.999057 + . ID=CGI_10020426; scaffold1132 WUBlastX LINE_RTE-X 334511 336553 850 + . . scaffold1132 GLEAN mRNA 323455 353252 0.805086 - . ID=CGI_10023315; scaffold365 WUBlastX LTR_Pao 252133 253446 575 + . . scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; scaffold365 WUBlastX LTR_Pao 254938 255099 56 + . . scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; scaffold1889 WUBlastX LINE_CR1 568307 568744 141 + . . scaffold1889 GLEAN mRNA 562057 574839 0.990088 + . ID=CGI_10019628; scaffold143 WUBlastX LINE_CR1-L2 215168 215515 117 + . . scaffold143 GLEAN mRNA 211939 221171 0.564856 - . ID=CGI_10010016; scaffold1558 WUBlastX LINE_L1 41713 41853 37 - . . scaffold1558 GLEAN mRNA 34398 73907 0.517269 - . ID=CGI_10004094; scaffold40638 WUBlastX LTR_Gypsy-Cigr 66567 66941 148 - . . scaffold40638 GLEAN mRNA 61308 67362 0.755375 - . ID=CGI_10004287; scaffold40894 WUBlastX DNA_En-Spm 34846 35241 168 - . . scaffold40894 GLEAN mRNA 20214 44382 0.41206 + . ID=CGI_10004536; scaffold1009 WUBlastX DNA_hAT-Tip100 423208 423471 36 + . . scaffold1009 GLEAN mRNA 414066 425148 0.992384 - . ID=CGI_10028732; scaffold1900 WUBlastX DNA_Harbinger 49249 49521 160 - . . scaffold1900 GLEAN mRNA 42587 57859 0.249831 + . ID=CGI_10017325; scaffold43076 WUBlastX LTR_Gypsy 188460 189044 152 - . . scaffold43076 GLEAN mRNA 177922 191367 0.98946 - . ID=CGI_10008769; scaffold43076 WUBlastX LTR_Gypsy 188460 189044 152 - . . scaffold43076 GLEAN mRNA 186716 211039 0.795025 + . ID=CGI_10008770; scaffold1323 WUBlastX LTR_Ngaro 75690 75863 70 - . . scaffold1323 GLEAN mRNA 62759 90642 0.99865 + . ID=CGI_10009082; scaffold40832 WUBlastX LINE_RTE-X 79819 81663 840 - . . scaffold40832 GLEAN mRNA 51373 82869 0.350561 + . ID=CGI_10004457; scaffold510 WUBlastX LTR_Ngaro 169942 171501 981 - . . scaffold510 GLEAN mRNA 163291 175111 0.785549 + . ID=CGI_10013769; scaffold449 WUBlastX LINE_CR1-L2 184691 185533 810 - . . scaffold449 GLEAN mRNA 184691 200379 0.558382 - . ID=CGI_10010963; scaffold616 WUBlastX LINE_RTE-X 25182 27803 821 - . . scaffold616 GLEAN mRNA 2988 39761 0.690684 - . ID=CGI_10015383; scaffold1705 WUBlastX LTR_Gypsy 94478 95860 94 - . . scaffold1705 GLEAN mRNA 68885 100114 0.343232 + . ID=CGI_10007468; scaffold140 WUBlastX LINE_CR1-L2 344946 345086 56 - . . scaffold140 GLEAN mRNA 327930 353126 0.379108 + . ID=CGI_10020135; scaffold140 WUBlastX LINE_CR1-L2 344946 345086 56 - . . scaffold140 GLEAN mRNA 344940 369951 0.671174 - . ID=CGI_10020136; scaffold43836 WUBlastX LINE_CR1 244388 245335 88 - . . scaffold43836 GLEAN mRNA 233435 246233 0.999128 + . ID=CGI_10013061; scaffold43836 WUBlastX LINE_CR1 244388 245335 88 - . . scaffold43836 GLEAN mRNA 242579 251086 0.650911 - . ID=CGI_10013062; scaffold43520 WUBlastX LTR_Ngaro 185338 186297 54 + . . scaffold43520 GLEAN mRNA 184106 230161 0.796254 - . ID=CGI_10010721; scaffold1427 WUBlastX DNA_Harbinger 105745 106023 36 - . . scaffold1427 GLEAN mRNA 100689 106671 0.382647 + . ID=CGI_10005232; scaffold1427 WUBlastX LTR_Gypsy 85724 86299 80 + . . scaffold1427 GLEAN mRNA 83286 88793 0.375742 + . ID=CGI_10005230; scaffold53 WUBlastX DNA_IS4EU 1155517 1155648 54 + . . scaffold53 GLEAN mRNA 1154714 1165146 0.994946 + . ID=CGI_10026702; scaffold1704 WUBlastX LINE_RTE-X 149781 150182 158 + . . scaffold1704 GLEAN mRNA 130337 165249 0.994715 + . ID=CGI_10010170; scaffold4 WUBlastX LINE_L1-Tx1 473267 473779 111 - . . scaffold4 GLEAN mRNA 463325 481913 0.998731 + . ID=CGI_10021180; scaffold4 WUBlastX LINE_L1-Tx1 475206 476429 612 - . . scaffold4 GLEAN mRNA 463325 481913 0.998731 + . ID=CGI_10021180; scaffold4 WUBlastX LINE_L1-Tx1 476772 477089 147 - . . scaffold4 GLEAN mRNA 463325 481913 0.998731 + . ID=CGI_10021180; scaffold43538 WUBlastX LTR_Gypsy-Cigr 34919 35122 89 + . . scaffold43538 GLEAN mRNA 31086 35366 0.988787 - . ID=CGI_10010813; scaffold499 WUBlastX LTR_DIRS 251494 252399 608 + . . scaffold499 GLEAN mRNA 249813 257188 0.581333 - . ID=CGI_10015767; scaffold42366 WUBlastX DNA_hAT 75976 76083 25 + . . scaffold42366 GLEAN mRNA 24937 76161 0.245386 + . ID=CGI_10006699; scaffold115 WUBlastX LINE_CR1-L2 581054 581323 63 + . . scaffold115 GLEAN mRNA 575453 585479 0.845977 + . ID=CGI_10021407; scaffold43552 WUBlastX LTR_Gypsy 226728 227303 143 - . . scaffold43552 GLEAN mRNA 204428 227902 0.829194 - . ID=CGI_10011023; scaffold780 WUBlastX LTR_Ngaro 965804 966241 163 + . . scaffold780 GLEAN mRNA 959842 972028 0.999936 - . ID=CGI_10024749; scaffold1745 WUBlastX LTR_Ngaro 118433 118621 145 + . . scaffold1745 GLEAN mRNA 107455 123228 0.998783 - . ID=CGI_10005406; scaffold42096 WUBlastX DNA_Harbinger 107437 107574 24 + . . scaffold42096 GLEAN mRNA 96755 112781 0.947295 - . ID=CGI_10006165; scaffold42096 WUBlastX DNA_Harbinger 107437 107574 24 + . . scaffold42096 GLEAN mRNA 106698 118966 0.999659 + . ID=CGI_10006166; scaffold1188 WUBlastX LINE_L1 791480 791701 109 - . . scaffold1188 GLEAN mRNA 787973 796993 0.991964 + . ID=CGI_10025502; scaffold560 WUBlastX LTR_DIRS 7513 8442 88 - . . scaffold560 GLEAN mRNA 2793 16922 0.999375 - . ID=CGI_10008749; scaffold560 WUBlastX LTR_DIRS 7513 8442 88 - . . scaffold560 GLEAN mRNA 7103 27549 1 + . ID=CGI_10008750; scaffold499 WUBlastX LTR_DIRS 252393 253277 513 + . . scaffold499 GLEAN mRNA 249813 257188 0.581333 - . ID=CGI_10015767; scaffold343 WUBlastX DNA_Zator 619366 621462 1225 + . . scaffold343 GLEAN mRNA 618238 636839 0.461317 - . ID=CGI_10021768; scaffold343 WUBlastX DNA_Zator 619366 621462 1225 + . . scaffold343 GLEAN mRNA 618887 626946 0.427987 + . ID=CGI_10021769; scaffold818 WUBlastX LTR_Pao 65353 65814 1303 - . . scaffold818 GLEAN mRNA 65347 65814 0.999999 - . ID=CGI_10014508; scaffold1094 WUBlastX DNA_hAT 661839 662120 124 - . . scaffold1094 GLEAN mRNA 660055 663729 1 - . ID=CGI_10021840; scaffold1094 WUBlastX DNA_hAT 661839 662120 124 - . . scaffold1094 GLEAN mRNA 653693 668891 0.999236 + . ID=CGI_10021839; scaffold630 WUBlastX LTR_Gypsy 374128 375498 1108 - . . scaffold630 GLEAN mRNA 373403 389900 0.98161 - . ID=CGI_10018333; scaffold43562 WUBlastX DNA_TcMar-Tc1 168288 168722 64 + . . scaffold43562 GLEAN mRNA 166638 176461 0.999676 + . ID=CGI_10011038; scaffold43562 WUBlastX DNA_TcMar-Tc1 168288 168722 64 + . . scaffold43562 GLEAN mRNA 156935 180007 0.944081 - . ID=CGI_10011037; scaffold39758 WUBlastX LINE_RTE-BovB 61591 61929 103 - . . scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold580 WUBlastX LTR_Pao 542997 543254 69 - . . scaffold580 GLEAN mRNA 534985 547949 0.999377 + . ID=CGI_10020515; scaffold580 WUBlastX LTR_Pao 543949 544257 53 - . . scaffold580 GLEAN mRNA 534985 547949 0.999377 + . ID=CGI_10020515; scaffold54 WUBlastX LTR_ERV1 83353 83544 46 + . . scaffold54 GLEAN mRNA 79485 84388 0.939929 + . ID=CGI_10023654; scaffold43146 WUBlastX DNA_IS4EU 102864 103298 55 - . . scaffold43146 GLEAN mRNA 80112 107835 0.644637 + . ID=CGI_10009042; scaffold64 WUBlastX DNA_Harbinger 127225 127548 155 - . . scaffold64 GLEAN mRNA 118246 132595 0.997548 - . ID=CGI_10005753; scaffold911 WUBlastX LTR_Gypsy 95931 96014 49 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold413 WUBlastX LINE_L2 735698 736549 31 + . . scaffold413 GLEAN mRNA 729457 747893 0.897312 - . ID=CGI_10022826; scaffold1179 WUBlastX LINE_L1 1212986 1213552 70 + . . scaffold1179 GLEAN mRNA 1211321 1215235 0.457085 - . ID=CGI_10027415; scaffold672 WUBlastX LINE_RTE-BovB 15243 15551 189 + . . scaffold672 GLEAN mRNA 1455 17003 0.927273 - . ID=CGI_10021021; scaffold896 WUBlastX LINE_L1-Tx1 247680 247898 42 + . . scaffold896 GLEAN mRNA 238310 251019 0.969948 - . ID=CGI_10022839; scaffold77 WUBlastX LINE_L1-Tx1 169180 171771 934 + . . scaffold77 GLEAN mRNA 166912 189780 0.993583 + . ID=CGI_10027970; scaffold533 WUBlastX LINE_L2 92328 94181 1207 + . . scaffold533 GLEAN mRNA 82717 99405 0.998409 - . ID=CGI_10005555; scaffold1750 WUBlastX LTR_Pao 636768 637001 134 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold1750 WUBlastX LTR_Pao 637025 637318 113 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold39900 WUBlastX DNA_Maverick 69640 70800 191 - . . scaffold39900 GLEAN mRNA 63800 72994 0.885101 + . ID=CGI_10003685; scaffold580 WUBlastX LTR_Pao 543623 543979 39 - . . scaffold580 GLEAN mRNA 534985 547949 0.999377 + . ID=CGI_10020515; scaffold580 WUBlastX LTR_Pao 544096 544257 63 - . . scaffold580 GLEAN mRNA 534985 547949 0.999377 + . ID=CGI_10020515; scaffold198 WUBlastX LTR_Gypsy 548816 549589 169 + . . scaffold198 GLEAN mRNA 532542 554203 0.338011 + . ID=CGI_10027815; scaffold1329 WUBlastX LTR_Gypsy 377065 377355 36 + . . scaffold1329 GLEAN mRNA 374236 377724 0.999633 + . ID=CGI_10015798; scaffold1315 WUBlastX LINE_Penelope 688683 689276 61 - . . scaffold1315 GLEAN mRNA 688539 696190 0.999948 - . ID=CGI_10021627; scaffold1315 WUBlastX LINE_Penelope 689371 689628 51 - . . scaffold1315 GLEAN mRNA 688539 696190 0.999948 - . ID=CGI_10021627; scaffold1372 WUBlastX LINE_RTE-X 109453 109830 62 + . . scaffold1372 GLEAN mRNA 106818 117508 0.255831 - . ID=CGI_10015663; scaffold1372 WUBlastX LINE_RTE-X 109826 110110 92 + . . scaffold1372 GLEAN mRNA 106818 117508 0.255831 - . ID=CGI_10015663; scaffold1749 WUBlastX LINE_RTE-X 173871 174233 79 - . . scaffold1749 GLEAN mRNA 168130 177487 0.428785 + . ID=CGI_10008260; scaffold544 WUBlastX LTR_Gypsy-Cigr 732347 732844 186 - . . scaffold544 GLEAN mRNA 727518 748903 0.982522 - . ID=CGI_10022583; scaffold315 WUBlastX DNA_hAT 391510 391770 67 - . . scaffold315 GLEAN mRNA 391071 395852 1 - . ID=CGI_10020424; scaffold315 WUBlastX DNA_hAT 392013 392138 38 - . . scaffold315 GLEAN mRNA 391071 395852 1 - . ID=CGI_10020424; scaffold315 WUBlastX DNA_hAT 393576 393671 38 - . . scaffold315 GLEAN mRNA 391071 395852 1 - . ID=CGI_10020424; scaffold42840 WUBlastX LINE_L2 188219 188365 34 + . . scaffold42840 GLEAN mRNA 176465 192129 0.833079 - . ID=CGI_10007840; scaffold42840 WUBlastX LINE_CR1 190885 191133 103 + . . scaffold42840 GLEAN mRNA 176465 192129 0.833079 - . ID=CGI_10007840; scaffold128 WUBlastX DNA_Kolobok-IS4 57217 58290 133 + . . scaffold128 GLEAN mRNA 54342 63516 0.993133 - . ID=CGI_10021504; scaffold42840 WUBlastX LINE_L2 63700 65076 42 - . . scaffold42840 GLEAN mRNA 60597 70020 0.754681 + . ID=CGI_10007833; scaffold38934 WUBlastX LTR_Ngaro 20984 21286 165 - . . scaffold38934 GLEAN mRNA 14643 26625 0.999796 + . ID=CGI_10003096; scaffold43988 WUBlastX LINE_RTE-X 60852 61379 142 - . . scaffold43988 GLEAN mRNA 49566 61691 0.999886 - . ID=CGI_10014965; scaffold419 WUBlastX LINE_Proto2 48623 49672 96 - . . scaffold419 GLEAN mRNA 46988 49900 0.999992 + . ID=CGI_10028319; scaffold41740 WUBlastX DNA_Sola 128938 129765 186 - . . scaffold41740 GLEAN mRNA 128935 130074 0.579463 - . ID=CGI_10005589; scaffold115 WUBlastX LINE_CR1-L2 581054 581371 58 + . . scaffold115 GLEAN mRNA 575453 585479 0.845977 + . ID=CGI_10021407; scaffold40836 WUBlastX LINE_CR1-L2 82549 82692 87 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold43708 WUBlastX LINE_CR1 132737 132805 20 - . . scaffold43708 GLEAN mRNA 129367 163757 0.948572 + . ID=CGI_10011970; scaffold1773 WUBlastX LTR_Gypsy-Cigr 83981 84685 184 - . . scaffold1773 GLEAN mRNA 83391 85072 0.980126 - . ID=CGI_10011225; scaffold90 WUBlastX DNA_hAT-hATw 391847 392524 144 + . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold82 WUBlastX DNA_Kolobok 754358 754498 36 - . . scaffold82 GLEAN mRNA 743361 754636 0.569957 - . ID=CGI_10025268; scaffold828 WUBlastX LINE_L1-Tx1 81917 82186 145 - . . scaffold828 GLEAN mRNA 78778 92221 0.986584 - . ID=CGI_10007365; scaffold351 WUBlastX LINE_Penelope 102671 103180 169 + . . scaffold351 GLEAN mRNA 94305 104490 0.817501 - . ID=CGI_10022591; scaffold34596 WUBlastX DNA_TcMar-Tc1 6662 6757 29 + . . scaffold34596 GLEAN mRNA 238 15197 0.650923 - . ID=CGI_10001323; scaffold34596 WUBlastX DNA_TcMar-Tc1 6662 6742 29 + . . scaffold34596 GLEAN mRNA 2015 6742 0.999994 + . ID=CGI_10001324; scaffold1244 WUBlastX LTR_Gypsy 125343 126143 886 - . . scaffold1244 GLEAN mRNA 121009 134472 0.646055 + . ID=CGI_10020823; scaffold1244 WUBlastX LTR_Gypsy 126997 127155 80 - . . scaffold1244 GLEAN mRNA 121009 134472 0.646055 + . ID=CGI_10020823; scaffold140 WUBlastX LINE_CR1-L2 345473 345631 100 - . . scaffold140 GLEAN mRNA 327930 353126 0.379108 + . ID=CGI_10020135; scaffold140 WUBlastX LINE_CR1-L2 345473 345631 100 - . . scaffold140 GLEAN mRNA 344940 369951 0.671174 - . ID=CGI_10020136; scaffold1259 WUBlastX LINE_CR1-L2 12781 13083 130 + . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold1532 WUBlastX LTR_Gypsy 393905 394525 95 + . . scaffold1532 GLEAN mRNA 391874 403369 0.462643 + . ID=CGI_10028249; scaffold368 WUBlastX DNA_Kolobok-IS4 89505 90167 178 + . . scaffold368 GLEAN mRNA 78208 92005 0.999415 - . ID=CGI_10018696; scaffold672 WUBlastX LINE_RTE-X 192397 192687 42 - . . scaffold672 GLEAN mRNA 185206 197456 1 + . ID=CGI_10021027; scaffold1067 WUBlastX LINE_L1-Tx1 107559 107942 152 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold1376 WUBlastX LINE_L2 15590 15757 61 + . . scaffold1376 GLEAN mRNA 13081 17616 0.523289 - . ID=CGI_10002794; scaffold1376 WUBlastX LINE_L2 15775 16107 129 + . . scaffold1376 GLEAN mRNA 13081 17616 0.523289 - . ID=CGI_10002794; scaffold1323 WUBlastX LINE_Penelope 11484 11684 45 + . . scaffold1323 GLEAN mRNA 5100 53779 0.182338 + . ID=CGI_10009080; scaffold41344 WUBlastX LINE_L2 113088 113531 219 - . . scaffold41344 GLEAN mRNA 105897 115468 0.999612 + . ID=CGI_10004984; scaffold1558 WUBlastX LINE_L1 40501 40854 100 - . . scaffold1558 GLEAN mRNA 34398 73907 0.517269 - . ID=CGI_10004094; scaffold315 WUBlastX LINE_RTE-X 508604 509698 46 - . . scaffold315 GLEAN mRNA 498248 518855 0.999027 + . ID=CGI_10020433; scaffold1459 WUBlastX LINE_L1-Tx1 11004 11480 114 + . . scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; scaffold469 WUBlastX LTR_Pao 624167 624739 456 + . . scaffold469 GLEAN mRNA 620008 639653 0.99956 + . ID=CGI_10024690; scaffold347 WUBlastX LINE_CR1 127569 127868 123 + . . scaffold347 GLEAN mRNA 127096 135007 0.556255 - . ID=CGI_10021779; scaffold42840 WUBlastX LINE_L2 188383 188742 201 + . . scaffold42840 GLEAN mRNA 176465 192129 0.833079 - . ID=CGI_10007840; scaffold1221 WUBlastX LINE_L1 390295 390630 87 + . . scaffold1221 GLEAN mRNA 352551 403939 0.753368 - . ID=CGI_10019745; scaffold1036 WUBlastX DNA_Maverick 596375 596428 29 + . . scaffold1036 GLEAN mRNA 594409 600469 0.995654 - . ID=CGI_10019975; scaffold1403 WUBlastX DNA_Sola 151964 153823 135 + . . scaffold1403 GLEAN mRNA 150469 154318 0.999879 + . ID=CGI_10020163; scaffold143 WUBlastX LTR_Gypsy 42860 43432 262 - . . scaffold143 GLEAN mRNA 39157 75752 0.728522 + . ID=CGI_10010007; scaffold210 WUBlastX LINE_L2 142425 142931 170 - . . scaffold210 GLEAN mRNA 130765 152251 0.999676 - . ID=CGI_10015883; scaffold1180 WUBlastX LTR_DIRS 23834 23986 22 + . . scaffold1180 GLEAN mRNA 13672 45655 0.485788 + . ID=CGI_10005979; C26936 WUBlastX LTR_Gypsy 1323 1346 20 - . . C26936 GLEAN mRNA 652 3529 1 - . ID=CGI_10000336; scaffold619 WUBlastX DNA_hAT-Ac 487683 487751 24 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold880 WUBlastX DNA_Kolobok 673937 674137 46 - . . scaffold880 GLEAN mRNA 673595 686654 0.926854 - . ID=CGI_10022204; scaffold457 WUBlastX LINE_RTE-BovB 366505 366903 144 + . . scaffold457 GLEAN mRNA 365264 371451 0.499678 - . ID=CGI_10014542; scaffold102 WUBlastX LINE_RTE-BovB 1278896 1279102 116 + . . scaffold102 GLEAN mRNA 1269983 1282871 0.999387 - . ID=CGI_10028488; scaffold102 WUBlastX LINE_RTE-BovB 1280117 1280311 34 + . . scaffold102 GLEAN mRNA 1269983 1282871 0.999387 - . ID=CGI_10028488; scaffold1021 WUBlastX LTR_Pao 582606 585029 1584 - . . scaffold1021 GLEAN mRNA 573402 587681 0.999217 - . ID=CGI_10022504; scaffold579 WUBlastX LTR_Pao 214197 215270 164 + . . scaffold579 GLEAN mRNA 193436 221323 0.863149 + . ID=CGI_10011264; C35840 WUBlastX DNA_Harbinger 1813 2010 59 - . . C35840 GLEAN mRNA 655 3933 0.500738 - . ID=CGI_10001630; scaffold77 WUBlastX LTR_Gypsy 1453962 1455050 164 - . . scaffold77 GLEAN mRNA 1435771 1455368 0.401661 + . ID=CGI_10028040; scaffold1221 WUBlastX DNA_MuDR 87952 88761 242 + . . scaffold1221 GLEAN mRNA 84840 95252 0.99967 - . ID=CGI_10019730; scaffold1480 WUBlastX LINE_L1 157844 159706 244 - . . scaffold1480 GLEAN mRNA 145751 160551 0.693127 - . ID=CGI_10008638; scaffold1244 WUBlastX LINE_Penelope 572056 572238 39 - . . scaffold1244 GLEAN mRNA 508938 634898 0.0392589 - . ID=CGI_10020838; scaffold1024 WUBlastX LTR_Gypsy 990242 990862 150 + . . scaffold1024 GLEAN mRNA 986108 994171 0.999235 - . ID=CGI_10028555; scaffold1866 WUBlastX LINE_CR1-L2 224171 224557 158 + . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold118 WUBlastX LINE_CR1-L2 72790 73296 225 + . . scaffold118 GLEAN mRNA 64475 78115 0.835706 + . ID=CGI_10004583; scaffold43076 WUBlastX LTR_Gypsy 188919 189314 51 - . . scaffold43076 GLEAN mRNA 177922 191367 0.98946 - . ID=CGI_10008769; scaffold43076 WUBlastX LTR_Gypsy 188919 189314 51 - . . scaffold43076 GLEAN mRNA 186716 211039 0.795025 + . ID=CGI_10008770; scaffold689 WUBlastX LTR_Gypsy 357020 357970 249 + . . scaffold689 GLEAN mRNA 335137 371615 0.991732 - . ID=CGI_10014831; scaffold914 WUBlastX DNA_TcMar-Tc1 256049 256747 210 - . . scaffold914 GLEAN mRNA 255125 272585 0.997448 + . ID=CGI_10018883; scaffold750 WUBlastX LINE_L2 14731 15132 32 + . . scaffold750 GLEAN mRNA 5241 30687 0.971968 + . ID=CGI_10022205; scaffold750 WUBlastX LINE_L2 15815 16009 31 + . . scaffold750 GLEAN mRNA 5241 30687 0.971968 + . ID=CGI_10022205; scaffold987 WUBlastX LINE_L2 81483 81938 246 + . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold911 WUBlastX LTR_Gypsy 98238 99245 280 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold599 WUBlastX LTR_Ngaro 32397 32864 162 - . . scaffold599 GLEAN mRNA 29083 62122 0.696781 + . ID=CGI_10021706; scaffold457 WUBlastX LINE_RTE-BovB 366893 367021 82 + . . scaffold457 GLEAN mRNA 365264 371451 0.499678 - . ID=CGI_10014542; scaffold243 WUBlastX LTR_Gypsy 118838 119242 38 - . . scaffold243 GLEAN mRNA 107331 122281 0.913043 + . ID=CGI_10006817; scaffold1706 WUBlastX LINE_L1 46991 47521 29 + . . scaffold1706 GLEAN mRNA 37786 56373 0.330403 - . ID=CGI_10003662; scaffold1350 WUBlastX LINE_L1-Tx1 177453 181244 1877 + . . scaffold1350 GLEAN mRNA 175145 193937 0.999592 - . ID=CGI_10017302; scaffold610 WUBlastX LTR_Gypsy 584255 584650 187 - . . scaffold610 GLEAN mRNA 570530 599736 0.974441 - . ID=CGI_10021131; scaffold264 WUBlastX LTR_Gypsy-Cigr 63882 64430 303 + . . scaffold264 GLEAN mRNA 55806 65386 0.919425 + . ID=CGI_10003463; scaffold1727 WUBlastX RC_Helitron 41839 42657 213 - . . scaffold1727 GLEAN mRNA 27437 43036 0.635377 + . ID=CGI_10002672; scaffold1186 WUBlastX LTR_Pao 205638 206678 956 + . . scaffold1186 GLEAN mRNA 187396 222353 0.578632 + . ID=CGI_10010597; scaffold6 WUBlastX LTR_Pao 126541 127434 482 + . . scaffold6 GLEAN mRNA 120164 144778 0.978215 - . ID=CGI_10022297; scaffold1423 WUBlastX LTR_Ngaro 726073 727014 220 - . . scaffold1423 GLEAN mRNA 702823 732700 0.440207 - . ID=CGI_10025438; scaffold647 WUBlastX LINE_L1-Tx1 136568 137107 248 - . . scaffold647 GLEAN mRNA 124845 138037 0.631256 + . ID=CGI_10006931; scaffold1817 WUBlastX LINE_L1-Tx1 16353 16541 44 + . . scaffold1817 GLEAN mRNA 9897 44966 0.453567 - . ID=CGI_10005250; scaffold1817 WUBlastX LINE_L1-Tx1 17748 18128 99 + . . scaffold1817 GLEAN mRNA 9897 44966 0.453567 - . ID=CGI_10005250; scaffold1817 WUBlastX LINE_L1-Tx1 18119 18400 91 + . . scaffold1817 GLEAN mRNA 9897 44966 0.453567 - . ID=CGI_10005250; scaffold107 WUBlastX LINE_RTE-X 458823 459569 233 - . . scaffold107 GLEAN mRNA 449056 473669 0.986168 - . ID=CGI_10025055; scaffold241 WUBlastX LINE_L1-Tx1 124731 125060 44 - . . scaffold241 GLEAN mRNA 108603 137659 0.55536 + . ID=CGI_10025092; scaffold833 WUBlastX DNA_Academ 469283 469387 24 - . . scaffold833 GLEAN mRNA 463710 469468 0.999591 - . ID=CGI_10016746; scaffold40282 WUBlastX LTR_Gypsy 75595 76158 154 - . . scaffold40282 GLEAN mRNA 56091 83549 0.539379 + . ID=CGI_10004002; scaffold1753 WUBlastX DNA_Helitron 44291 44905 131 + . . scaffold1753 GLEAN mRNA 42409 50828 0.996749 + . ID=CGI_10010802; scaffold453 WUBlastX LTR_Gypsy 306518 306619 21 + . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold1625 WUBlastX LINE_RTE-X 169785 170144 40 - . . scaffold1625 GLEAN mRNA 163230 175754 0.999993 - . ID=CGI_10007533; scaffold61 WUBlastX LINE_RTE-X 91956 92267 123 + . . scaffold61 GLEAN mRNA 83781 97404 0.999676 - . ID=CGI_10016342; scaffold44 WUBlastX DNA_IS4EU 349982 350734 85 - . . scaffold44 GLEAN mRNA 346940 353357 0.748127 - . ID=CGI_10016836; scaffold42880 WUBlastX LTR_Ngaro 29340 29522 219 - . . scaffold42880 GLEAN mRNA 29055 29522 0.999999 - . ID=CGI_10007997; scaffold1525 WUBlastX LTR_Ngaro 357248 357952 218 + . . scaffold1525 GLEAN mRNA 345189 363927 0.815102 - . ID=CGI_10013870; scaffold38292 WUBlastX LTR_Ngaro 34155 34910 265 - . . scaffold38292 GLEAN mRNA 26899 37380 0.771739 - . ID=CGI_10002691; scaffold150 WUBlastX LTR_Pao 442047 442586 364 + . . scaffold150 GLEAN mRNA 440940 442586 0.995484 + . ID=CGI_10028609; scaffold226 WUBlastX LTR_Gypsy 921740 922651 217 + . . scaffold226 GLEAN mRNA 913200 931789 0.655497 - . ID=CGI_10025388; scaffold40134 WUBlastX DNA_Harbinger 29353 29472 69 + . . scaffold40134 GLEAN mRNA 26792 31648 0.922114 - . ID=CGI_10003881; scaffold243 WUBlastX LTR_Gypsy 116919 116960 20 - . . scaffold243 GLEAN mRNA 107331 122281 0.913043 + . ID=CGI_10006817; scaffold43146 WUBlastX LINE_L1-Tx1 196864 197766 218 + . . scaffold43146 GLEAN mRNA 193579 199513 0.963019 - . ID=CGI_10009047; scaffold1066 WUBlastX LTR_Ngaro 176826 177557 260 - . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold204 WUBlastX DNA_Harbinger 414185 414334 66 + . . scaffold204 GLEAN mRNA 394042 414406 0.339936 + . ID=CGI_10026106; scaffold337 WUBlastX LTR_Gypsy 490375 490878 46 - . . scaffold337 GLEAN mRNA 483649 507534 0.56595 + . ID=CGI_10028067; scaffold1583 WUBlastX LINE_RTE-X 324351 324659 138 - . . scaffold1583 GLEAN mRNA 302473 325169 0.82008 - . ID=CGI_10025823; scaffold29534 WUBlastX LINE_RTE-X 1313 2338 253 + . . scaffold29534 GLEAN mRNA 32 6456 1 - . ID=CGI_10000544; scaffold43616 WUBlastX LINE_RTE-X 205179 205319 32 - . . scaffold43616 GLEAN mRNA 187064 211275 0.700682 + . ID=CGI_10011425; scaffold37880 WUBlastX DNA_Maverick 15409 15993 352 + . . scaffold37880 GLEAN mRNA 2966 17075 0.52423 - . ID=CGI_10002532; scaffold6 WUBlastX LTR_Pao 128628 128786 47 + . . scaffold6 GLEAN mRNA 120164 144778 0.978215 - . ID=CGI_10022297; scaffold1174 WUBlastX DNA_Harbinger 978632 978892 203 - . . scaffold1174 GLEAN mRNA 969973 990165 0.301625 + . ID=CGI_10026076; scaffold1174 WUBlastX DNA_Harbinger 979433 979645 163 - . . scaffold1174 GLEAN mRNA 969973 990165 0.301625 + . ID=CGI_10026076; scaffold544 WUBlastX LINE_L1 209819 210052 72 - . . scaffold544 GLEAN mRNA 202069 215253 0.999676 + . ID=CGI_10022552; scaffold1036 WUBlastX DNA_Maverick 202361 202837 219 - . . scaffold1036 GLEAN mRNA 202062 206192 0.444605 - . ID=CGI_10019953; scaffold1036 WUBlastX DNA_Maverick 203226 203390 76 - . . scaffold1036 GLEAN mRNA 202062 206192 0.444605 - . ID=CGI_10019953; scaffold172 WUBlastX LTR_Ngaro 278180 278356 118 - . . scaffold172 GLEAN mRNA 274118 285723 0.998306 - . ID=CGI_10013528; scaffold172 WUBlastX LTR_Ngaro 278293 278829 108 - . . scaffold172 GLEAN mRNA 274118 285723 0.998306 - . ID=CGI_10013528; scaffold721 WUBlastX LINE_L2 83717 84010 152 + . . scaffold721 GLEAN mRNA 68079 89248 0.992034 + . ID=CGI_10021995; scaffold40680 WUBlastX DNA_Harbinger 27418 27699 219 + . . scaffold40680 GLEAN mRNA 27135 28116 0.500588 + . ID=CGI_10004354; scaffold40680 WUBlastX DNA_Harbinger 27418 27699 219 + . . scaffold40680 GLEAN mRNA 16 36776 0.246623 - . ID=CGI_10004353; scaffold44098 WUBlastX LINE_CR1 194094 194237 32 + . . scaffold44098 GLEAN mRNA 188555 213785 0.544557 + . ID=CGI_10017708; scaffold453 WUBlastX LTR_Gypsy 306704 306784 21 + . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold43064 WUBlastX LINE_RTE-X 21283 21540 35 - . . scaffold43064 GLEAN mRNA 2241 22972 0.292417 + . ID=CGI_10008625; scaffold733 WUBlastX LINE_L1-Tx1 888740 889537 50 - . . scaffold733 GLEAN mRNA 864535 893177 0.998838 + . ID=CGI_10025893; scaffold733 WUBlastX LINE_L1-Tx1 889816 890124 190 - . . scaffold733 GLEAN mRNA 864535 893177 0.998838 + . ID=CGI_10025893; scaffold783 WUBlastX LTR_Pao 271733 273583 363 - . . scaffold783 GLEAN mRNA 271175 288350 0.999949 + . ID=CGI_10011687; scaffold37532 WUBlastX LTR_Gypsy 32395 32640 128 - . . scaffold37532 GLEAN mRNA 24867 43092 0.82218 + . ID=CGI_10002401; scaffold1888 WUBlastX DNA_TcMar-Pogo 51190 51564 60 + . . scaffold1888 GLEAN mRNA 49981 53887 0.998764 + . ID=CGI_10013292; scaffold563 WUBlastX LINE_L1-Tx1 511248 511478 38 + . . scaffold563 GLEAN mRNA 469996 513756 0.653133 + . ID=CGI_10019843; scaffold1729 WUBlastX DNA_En-Spm 53353 55116 334 + . . scaffold1729 GLEAN mRNA 50402 60273 0.999674 + . ID=CGI_10008485; scaffold522 WUBlastX LTR_Gypsy 557135 557476 192 - . . scaffold522 GLEAN mRNA 555460 561290 0.999999 + . ID=CGI_10020338; scaffold522 WUBlastX LTR_Gypsy 555724 556293 62 - . . scaffold522 GLEAN mRNA 555460 561290 0.999999 + . ID=CGI_10020338; scaffold522 WUBlastX LTR_Gypsy 556303 556833 194 - . . scaffold522 GLEAN mRNA 555460 561290 0.999999 + . ID=CGI_10020338; scaffold664 WUBlastX DNA_Harbinger 392824 393309 174 - . . scaffold664 GLEAN mRNA 373118 396523 0.330346 - . ID=CGI_10021447; scaffold664 WUBlastX DNA_Harbinger 393287 393658 125 - . . scaffold664 GLEAN mRNA 373118 396523 0.330346 - . ID=CGI_10021447; scaffold4 WUBlastX LINE_L1 474860 475048 40 - . . scaffold4 GLEAN mRNA 463325 481913 0.998731 + . ID=CGI_10021180; scaffold469 WUBlastX LTR_Pao 621566 622261 193 - . . scaffold469 GLEAN mRNA 620008 639653 0.99956 + . ID=CGI_10024690; scaffold1800 WUBlastX LTR_Gypsy 7175 7711 75 + . . scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; scaffold977 WUBlastX DNA_hAT 165610 166335 56 + . . scaffold977 GLEAN mRNA 164557 166422 1 + . ID=CGI_10017164; scaffold977 WUBlastX DNA_hAT 165610 166335 56 + . . scaffold977 GLEAN mRNA 146070 167200 0.562252 - . ID=CGI_10017163; scaffold930 WUBlastX DNA_Merlin 239848 240240 26 + . . scaffold930 GLEAN mRNA 232511 243304 0.84036 - . ID=CGI_10010203; scaffold930 WUBlastX DNA_Merlin 241083 241574 292 + . . scaffold930 GLEAN mRNA 232511 243304 0.84036 - . ID=CGI_10010203; scaffold257 WUBlastX LTR_DIRS 1605860 1606288 204 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold75 WUBlastX DNA_TcMar-Marin 48912 49421 287 + . . scaffold75 GLEAN mRNA 46839 68019 0.92374 - . ID=CGI_10005790; scaffold6 WUBlastX LINE_L1-Tx1 199540 200214 148 + . . scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; C34856 WUBlastX LTR_Gypsy 9214 9450 124 + . . C34856 GLEAN mRNA 131 10544 0.998639 + . ID=CGI_10001362; scaffold337 WUBlastX LTR_Gypsy 489176 489748 161 - . . scaffold337 GLEAN mRNA 483649 507534 0.56595 + . ID=CGI_10028067; scaffold847 WUBlastX RC_Helitron 438743 439180 63 - . . scaffold847 GLEAN mRNA 435807 447835 0.572478 + . ID=CGI_10022278; scaffold1277 WUBlastX LINE_RTE-X 82675 82872 75 + . . scaffold1277 GLEAN mRNA 76656 92744 0.765999 - . ID=CGI_10008022; scaffold1277 WUBlastX LINE_RTE-X 82953 83873 277 + . . scaffold1277 GLEAN mRNA 76656 92744 0.765999 - . ID=CGI_10008022; scaffold6 WUBlastX LINE_L1-Tx1 199292 199483 31 + . . scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; scaffold632 WUBlastX LTR_Pao 94211 94276 32 + . . scaffold632 GLEAN mRNA 94211 107626 0.991776 + . ID=CGI_10018438; scaffold1329 WUBlastX DNA_hAT-Ac 93895 94041 52 - . . scaffold1329 GLEAN mRNA 77218 94406 0.816606 - . ID=CGI_10015782; scaffold43920 WUBlastX LINE_L1-Tx1 329080 329304 50 - . . scaffold43920 GLEAN mRNA 326902 340720 1 - . ID=CGI_10014000; scaffold1097 WUBlastX LINE_RTE-BovB 681329 681991 161 - . . scaffold1097 GLEAN mRNA 671182 687187 0.811238 + . ID=CGI_10024541; scaffold48 WUBlastX DNA_TcMar-Tc2 530338 530628 187 + . . scaffold48 GLEAN mRNA 529087 543822 0.928882 + . ID=CGI_10023906; scaffold48 WUBlastX DNA_TcMar-Tc2 530580 531206 312 + . . scaffold48 GLEAN mRNA 529087 543822 0.928882 + . ID=CGI_10023906; scaffold41660 WUBlastX LINE_L1-Tx1 113124 113543 77 - . . scaffold41660 GLEAN mRNA 108736 121603 0.999676 + . ID=CGI_10005401; scaffold1788 WUBlastX LINE_R2-Hero 600782 601075 125 + . . scaffold1788 GLEAN mRNA 585785 601075 0.975766 + . ID=CGI_10019941; scaffold406 WUBlastX LTR_Gypsy 63392 63904 503 - . . scaffold406 GLEAN mRNA 63105 78647 0.760341 - . ID=CGI_10023839; scaffold1719 WUBlastX LTR_Ngaro 197525 197824 204 - . . scaffold1719 GLEAN mRNA 177172 199114 0.99732 - . ID=CGI_10014281; scaffold1719 WUBlastX LTR_Ngaro 197845 198120 84 - . . scaffold1719 GLEAN mRNA 177172 199114 0.99732 - . ID=CGI_10014281; scaffold1561 WUBlastX LINE_RTE-X 98875 99483 293 - . . scaffold1561 GLEAN mRNA 90687 107153 0.999946 - . ID=CGI_10005694; scaffold42656 WUBlastX LINE_L1-Tx1 99827 100378 246 + . . scaffold42656 GLEAN mRNA 97324 103656 1 - . ID=CGI_10007415; scaffold942 WUBlastX DNA_TcMar-Tc1 396242 396808 210 + . . scaffold942 GLEAN mRNA 390660 406366 0.734087 - . ID=CGI_10019170; scaffold1132 WUBlastX LINE_RTE-X 424662 424796 63 + . . scaffold1132 GLEAN mRNA 413110 426704 0.743295 - . ID=CGI_10023318; scaffold6 WUBlastX LINE_CR1 673294 673500 72 - . . scaffold6 GLEAN mRNA 669450 677435 1 + . ID=CGI_10022331; scaffold1166 WUBlastX LINE_RTE-X 13547 14914 401 - . . scaffold1166 GLEAN mRNA 4220 15993 0.883594 + . ID=CGI_10006284; scaffold292 WUBlastX LINE_L1-Tx1 7438 8094 121 + . . scaffold292 GLEAN mRNA 5287 26747 0.497399 + . ID=CGI_10003526; scaffold1672 WUBlastX LTR_DIRS 60296 61171 550 + . . scaffold1672 GLEAN mRNA 57333 81461 0.999231 + . ID=CGI_10004942; scaffold804 WUBlastX LTR_Gypsy 178391 178666 43 - . . scaffold804 GLEAN mRNA 171131 181585 0.935885 + . ID=CGI_10014858; scaffold804 WUBlastX LTR_Gypsy 178693 178851 54 - . . scaffold804 GLEAN mRNA 171131 181585 0.935885 + . ID=CGI_10014858; scaffold471 WUBlastX DNA_IS4EU 325188 326165 445 + . . scaffold471 GLEAN mRNA 325188 326174 0.636168 + . ID=CGI_10027009; scaffold950 WUBlastX LINE_L2 390733 391149 196 - . . scaffold950 GLEAN mRNA 384027 397632 0.588964 + . ID=CGI_10022929; scaffold334 WUBlastX LINE_L1-Tx1 1046169 1046279 65 + . . scaffold334 GLEAN mRNA 1033963 1069994 0.961302 - . ID=CGI_10025971; scaffold334 WUBlastX LINE_L1-Tx1 1046546 1048225 332 + . . scaffold334 GLEAN mRNA 1033963 1069994 0.961302 - . ID=CGI_10025971; scaffold334 WUBlastX LINE_L1-Tx1 1049133 1049228 25 + . . scaffold334 GLEAN mRNA 1033963 1069994 0.961302 - . ID=CGI_10025971; scaffold934 WUBlastX LTR_Ngaro 407907 408797 406 + . . scaffold934 GLEAN mRNA 385356 409492 0.99982 + . ID=CGI_10015451; scaffold38374 WUBlastX LTR_Gypsy 14630 15463 50 + . . scaffold38374 GLEAN mRNA 8302 17987 0.957619 + . ID=CGI_10002746; C34856 WUBlastX LTR_Gypsy 9109 9402 129 + . . C34856 GLEAN mRNA 131 10544 0.998639 + . ID=CGI_10001362; scaffold1671 WUBlastX LINE_RTE-BovB 412934 413638 403 + . . scaffold1671 GLEAN mRNA 411663 422714 0.51142 + . ID=CGI_10015159; scaffold1671 WUBlastX LINE_RTE-BovB 413640 413975 204 + . . scaffold1671 GLEAN mRNA 411663 422714 0.51142 + . ID=CGI_10015159; scaffold43836 WUBlastX LINE_RTE-X 243749 245176 499 - . . scaffold43836 GLEAN mRNA 233435 246233 0.999128 + . ID=CGI_10013061; scaffold43836 WUBlastX LINE_RTE-X 243749 245176 499 - . . scaffold43836 GLEAN mRNA 242579 251086 0.650911 - . ID=CGI_10013062; scaffold386 WUBlastX DNA_IS4EU 216286 216573 33 - . . scaffold386 GLEAN mRNA 207482 239068 0.43817 - . ID=CGI_10012689; scaffold210 WUBlastX LINE_L2 438859 439737 326 - . . scaffold210 GLEAN mRNA 426681 440258 0.999993 - . ID=CGI_10015907; scaffold210 WUBlastX LINE_L2 439748 440077 178 - . . scaffold210 GLEAN mRNA 426681 440258 0.999993 - . ID=CGI_10015907; scaffold58 WUBlastX DNA_IS4EU 396918 397139 139 - . . scaffold58 GLEAN mRNA 395705 399423 0.999985 - . ID=CGI_10023143; scaffold58 WUBlastX DNA_IS4EU 397357 398028 395 - . . scaffold58 GLEAN mRNA 395705 399423 0.999985 - . ID=CGI_10023143; scaffold58 WUBlastX DNA_IS4EU 398295 398429 45 - . . scaffold58 GLEAN mRNA 395705 399423 0.999985 - . ID=CGI_10023143; scaffold86 WUBlastX DNA_IS4EU 226174 226395 139 - . . scaffold86 GLEAN mRNA 226150 228665 0.977065 - . ID=CGI_10028143; scaffold86 WUBlastX DNA_IS4EU 226613 227284 397 - . . scaffold86 GLEAN mRNA 226150 228665 0.977065 - . ID=CGI_10028143; scaffold86 WUBlastX DNA_IS4EU 227551 227685 45 - . . scaffold86 GLEAN mRNA 226150 228665 0.977065 - . ID=CGI_10028143; scaffold39758 WUBlastX LINE_RTE-BovB 61564 61815 174 - . . scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold39758 WUBlastX LINE_RTE-BovB 61893 62288 136 - . . scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold1096 WUBlastX LTR_Gypsy 67330 67506 61 - . . scaffold1096 GLEAN mRNA 61473 82912 0.788854 + . ID=CGI_10006453; scaffold35180 WUBlastX LINE_L1-Tx1 18335 19555 334 - . . scaffold35180 GLEAN mRNA 904 21932 0.992496 - . ID=CGI_10001433; scaffold381 WUBlastX LINE_RTE-BovB 441214 441987 333 - . . scaffold381 GLEAN mRNA 430162 460289 0.970742 - . ID=CGI_10017566; scaffold381 WUBlastX LINE_RTE-BovB 441996 442313 373 - . . scaffold381 GLEAN mRNA 430162 460289 0.970742 - . ID=CGI_10017566; scaffold113 WUBlastX LTR_Ngaro 117945 117970 710 + . . scaffold113 GLEAN mRNA 112752 117970 0.458528 + . ID=CGI_10021286; scaffold4 WUBlastX LINE_L1-Tx1 474746 475111 25 - . . scaffold4 GLEAN mRNA 463325 481913 0.998731 + . ID=CGI_10021180; scaffold1237 WUBlastX LTR_DIRS 258907 260229 741 + . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold393 WUBlastX LINE_RTE-X 1041469 1041978 193 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold550 WUBlastX LTR_Gypsy 192658 193503 495 - . . scaffold550 GLEAN mRNA 192301 204322 0.634785 + . ID=CGI_10012493; scaffold42274 WUBlastX DNA_hAT 10945 11100 131 - . . scaffold42274 GLEAN mRNA 8593 13901 0.722974 - . ID=CGI_10006509; scaffold1021 WUBlastX LINE_L1-Tx1 451946 453664 633 + . . scaffold1021 GLEAN mRNA 448242 473584 0.324995 - . ID=CGI_10022500; scaffold71 WUBlastX LTR_Ngaro 270763 272100 765 + . . scaffold71 GLEAN mRNA 268268 281594 0.588785 + . ID=CGI_10015059; scaffold502 WUBlastX LINE_L1 74765 75895 269 + . . scaffold502 GLEAN mRNA 66995 88059 0.642831 + . ID=CGI_10024313; scaffold1875 WUBlastX DNA_Zator 22328 22483 61 - . . scaffold1875 GLEAN mRNA 22003 31388 0.35214 + . ID=CGI_10006624; scaffold1875 WUBlastX DNA_Zator 22328 22483 61 - . . scaffold1875 GLEAN mRNA 22319 22768 1 - . ID=CGI_10006625; scaffold1875 WUBlastX DNA_Zator 22658 22921 67 - . . scaffold1875 GLEAN mRNA 22003 31388 0.35214 + . ID=CGI_10006624; scaffold1875 WUBlastX DNA_Zator 22658 22768 67 - . . scaffold1875 GLEAN mRNA 22319 22768 1 - . ID=CGI_10006625; scaffold1875 WUBlastX DNA_Zator 23429 23635 57 - . . scaffold1875 GLEAN mRNA 22003 31388 0.35214 + . ID=CGI_10006624; scaffold1875 WUBlastX DNA_Zator 23429 23635 57 - . . scaffold1875 GLEAN mRNA 23363 24929 1 - . ID=CGI_10006626; scaffold1875 WUBlastX DNA_Zator 23709 25169 676 - . . scaffold1875 GLEAN mRNA 22003 31388 0.35214 + . ID=CGI_10006624; scaffold1875 WUBlastX DNA_Zator 23709 24929 676 - . . scaffold1875 GLEAN mRNA 23363 24929 1 - . ID=CGI_10006626; scaffold169 WUBlastX DNA_Sola 635126 636838 759 - . . scaffold169 GLEAN mRNA 628224 637732 0.973288 - . ID=CGI_10022960; scaffold40282 WUBlastX LTR_Gypsy 75953 76456 27 - . . scaffold40282 GLEAN mRNA 56091 83549 0.539379 + . ID=CGI_10004002; scaffold53 WUBlastX DNA_TcMar-Fot1 1003789 1004352 365 + . . scaffold53 GLEAN mRNA 983465 1007230 0.466135 - . ID=CGI_10026695; scaffold43786 WUBlastX LINE_L1-Tx1 249246 249443 123 - . . scaffold43786 GLEAN mRNA 234476 275282 0.999342 - . ID=CGI_10012356; scaffold381 WUBlastX LINE_L2 165817 167211 831 + . . scaffold381 GLEAN mRNA 121685 178510 0.998567 - . ID=CGI_10017555; scaffold392 WUBlastX LINE_RTE-X 450453 452798 669 - . . scaffold392 GLEAN mRNA 426913 455766 0.44936 + . ID=CGI_10024218; scaffold35014 WUBlastX DNA_PiggyBac 13970 14110 65 + . . scaffold35014 GLEAN mRNA 9316 21495 0.996281 + . ID=CGI_10001389; scaffold852 WUBlastX DNA_Merlin 121898 122167 47 + . . scaffold852 GLEAN mRNA 121104 128274 1 + . ID=CGI_10012039; scaffold1836 WUBlastX LTR_Gypsy 715534 715698 79 + . . scaffold1836 GLEAN mRNA 712795 721764 0.843575 + . ID=CGI_10026300; scaffold896 WUBlastX LINE_L1 247797 247934 36 + . . scaffold896 GLEAN mRNA 238310 251019 0.969948 - . ID=CGI_10022839; scaffold1066 WUBlastX LTR_Copia 175750 175944 37 + . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; C26472 WUBlastX LTR_Pao 173 535 39 - . . C26472 GLEAN mRNA 44 535 0.999372 - . ID=CGI_10000305; scaffold35438 WUBlastX LTR_Pao 22653 23060 50 + . . scaffold35438 GLEAN mRNA 22653 23117 0.996819 + . ID=CGI_10001515; scaffold43686 WUBlastX LINE_L2 174847 175296 21 - . . scaffold43686 GLEAN mRNA 172665 193661 0.978405 - . ID=CGI_10011758; scaffold42208 WUBlastX LINE_CR1-L2 42531 42701 50 + . . scaffold42208 GLEAN mRNA 40222 44314 0.99733 - . ID=CGI_10006350; scaffold1865 WUBlastX LINE_CR1-L2 356036 356281 39 - . . scaffold1865 GLEAN mRNA 344097 356570 0.999624 + . ID=CGI_10013550; scaffold541 WUBlastX LINE_L2 106224 106556 53 + . . scaffold541 GLEAN mRNA 106056 107192 0.777728 + . ID=CGI_10022378; scaffold1084 WUBlastX LTR_ERV1 37418 37507 31 + . . scaffold1084 GLEAN mRNA 31266 40802 0.801676 + . ID=CGI_10010075; scaffold1423 WUBlastX LTR_Ngaro 732071 732259 58 - . . scaffold1423 GLEAN mRNA 702823 732700 0.440207 - . ID=CGI_10025438; scaffold36790 WUBlastX LTR_Ngaro 25776 25859 28 + . . scaffold36790 GLEAN mRNA 14645 35591 0.936014 - . ID=CGI_10002141; scaffold880 WUBlastX DNA_Crypton 529873 529941 96 + . . scaffold880 GLEAN mRNA 522974 529941 0.988013 + . ID=CGI_10022199; scaffold622 WUBlastX DNA_Crypton 309060 309362 69 + . . scaffold622 GLEAN mRNA 308008 319722 0.586807 - . ID=CGI_10018209; scaffold392 WUBlastX LINE_L2 422645 422854 64 + . . scaffold392 GLEAN mRNA 419040 422893 0.701545 + . ID=CGI_10024216; scaffold1561 WUBlastX LTR_Ngaro 14644 14919 83 + . . scaffold1561 GLEAN mRNA 6278 19988 0.999234 + . ID=CGI_10005689; scaffold35986 WUBlastX LTR_Gypsy 12984 13121 95 + . . scaffold35986 GLEAN mRNA 7135 18106 0.651135 + . ID=CGI_10001706; scaffold363 WUBlastX LTR_Gypsy 501291 501518 54 - . . scaffold363 GLEAN mRNA 500751 501623 1 - . ID=CGI_10019310; scaffold198 WUBlastX DNA_Harbinger 129619 129813 76 - . . scaffold198 GLEAN mRNA 125037 150103 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_Harbinger 129619 129813 76 - . . scaffold198 GLEAN mRNA 129155 148314 0.927276 - . ID=CGI_10027796; scaffold66 WUBlastX DNA_IS4EU 112338 112442 48 + . . scaffold66 GLEAN mRNA 105673 117401 0.445669 + . ID=CGI_10006192; scaffold66 WUBlastX DNA_IS4EU 112472 112600 27 + . . scaffold66 GLEAN mRNA 105673 117401 0.445669 + . ID=CGI_10006192; scaffold271 WUBlastX DNA_IS4EU 431254 431331 51 - . . scaffold271 GLEAN mRNA 431230 438349 1 - . ID=CGI_10024477; scaffold211 WUBlastX LINE_L1-Tx1 699409 699846 42 + . . scaffold211 GLEAN mRNA 691120 715917 0.0754063 + . ID=CGI_10026960; scaffold1009 WUBlastX LINE_L1 673800 674537 31 - . . scaffold1009 GLEAN mRNA 673569 674573 0.999984 - . ID=CGI_10028748; scaffold85 WUBlastX DNA_Kolobok-Hyd 390273 390677 28 + . . scaffold85 GLEAN mRNA 390093 393777 0.490241 + . ID=CGI_10020705; scaffold502 WUBlastX LINE_Penelope 280391 280528 33 - . . scaffold502 GLEAN mRNA 265921 292012 0.339102 + . ID=CGI_10024318; scaffold1554 WUBlastX LINE_L2 84623 84665 34 - . . scaffold1554 GLEAN mRNA 84456 84665 0.999372 - . ID=CGI_10017358; scaffold987 WUBlastX LINE_L1 76050 76305 27 - . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold501 WUBlastX LINE_Penelope 1136669 1137073 32 + . . scaffold501 GLEAN mRNA 1134633 1191403 0.395005 - . ID=CGI_10027545; scaffold544 WUBlastX LINE_RTE-X 38192 38419 71 - . . scaffold544 GLEAN mRNA 36952 44048 1 + . ID=CGI_10022544; scaffold40950 WUBlastX LINE_RTE-X 64204 64323 80 + . . scaffold40950 GLEAN mRNA 45067 69137 1 - . ID=CGI_10004590; scaffold6 WUBlastX DNA_hAT-Tip100 723687 723902 67 + . . scaffold6 GLEAN mRNA 701995 741494 0.270237 + . ID=CGI_10022334; scaffold37472 WUBlastX LINE_CR1 29614 29694 56 + . . scaffold37472 GLEAN mRNA 1629 29724 0.999786 + . ID=CGI_10002390; scaffold168 WUBlastX LINE_CR1 20329 20493 35 - . . scaffold168 GLEAN mRNA 17788 42641 0.990039 - . ID=CGI_10025582; scaffold352 WUBlastX LINE_CR1-L2 156766 156888 23 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold352 WUBlastX LINE_CR1-L2 157774 157926 61 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold1352 WUBlastX LINE_L1 217162 217428 91 - . . scaffold1352 GLEAN mRNA 212932 230879 0.392918 - . ID=CGI_10018413; scaffold226 WUBlastX LINE_L2 1052980 1053387 33 - . . scaffold226 GLEAN mRNA 1050620 1061522 0.99513 - . ID=CGI_10025399; scaffold1745 WUBlastX LTR_Ngaro 118337 118597 83 + . . scaffold1745 GLEAN mRNA 107455 123228 0.998783 - . ID=CGI_10005406; scaffold1132 WUBlastX LINE_L2 421289 421456 83 + . . scaffold1132 GLEAN mRNA 413110 426704 0.743295 - . ID=CGI_10023318; scaffold950 WUBlastX LINE_L2 235428 235466 29 - . . scaffold950 GLEAN mRNA 224684 252187 0.638871 - . ID=CGI_10022925; scaffold1237 WUBlastX LTR_Gypsy 258132 258368 28 + . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold143 WUBlastX LTR_Gypsy 80244 80516 54 - . . scaffold143 GLEAN mRNA 80214 80516 0.776794 - . ID=CGI_10010009; scaffold1710 WUBlastX LINE_R2-Hero 723110 723217 72 + . . scaffold1710 GLEAN mRNA 716235 735298 0.587067 - . ID=CGI_10022373; scaffold598 WUBlastX LTR_Gypsy 1349 2302 41 + . . scaffold598 GLEAN mRNA 1303 4771 0.992797 + . ID=CGI_10001778; scaffold386 WUBlastX DNA_TcMar-Marin 87102 87482 68 + . . scaffold386 GLEAN mRNA 81379 108874 0.997229 - . ID=CGI_10012681; scaffold1036 WUBlastX DNA_MuDR 479252 479518 85 - . . scaffold1036 GLEAN mRNA 472347 489883 1 - . ID=CGI_10019970; scaffold37760 WUBlastX LTR_ERVK 15184 15237 23 + . . scaffold37760 GLEAN mRNA 11272 38265 0.979677 + . ID=CGI_10002466; scaffold1373 WUBlastX LINE_Penelope 166900 167478 32 - . . scaffold1373 GLEAN mRNA 164407 174047 0.544675 - . ID=CGI_10007913; scaffold1255 WUBlastX DNA_Kolobok 7997 8230 49 - . . scaffold1255 GLEAN mRNA 3472 8230 0.999979 - . ID=CGI_10018055; scaffold36598 WUBlastX DNA_IS4EU 11596 11931 85 + . . scaffold36598 GLEAN mRNA 10870 17380 0.999993 + . ID=CGI_10002012; scaffold1154 WUBlastX LINE_RTE-X 813780 814136 60 + . . scaffold1154 GLEAN mRNA 811283 818578 1 - . ID=CGI_10026191; scaffold3 WUBlastX LINE_RTE-X 50715 51032 32 + . . scaffold3 GLEAN mRNA 34173 61876 0.984416 - . ID=CGI_10027268; scaffold3 WUBlastX LINE_RTE-X 50715 51032 32 + . . scaffold3 GLEAN mRNA 47892 52805 0.999676 + . ID=CGI_10027269; scaffold1359 WUBlastX LINE_RTE-X 143042 143266 66 + . . scaffold1359 GLEAN mRNA 137228 157438 0.889848 - . ID=CGI_10013236; scaffold578 WUBlastX LINE_RTE-X 356363 356590 25 + . . scaffold578 GLEAN mRNA 348664 361929 0.458006 + . ID=CGI_10015130; scaffold695 WUBlastX LINE_L1-Tx1 98441 98563 39 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold39196 WUBlastX DNA_Merlin 49826 50152 73 + . . scaffold39196 GLEAN mRNA 18014 59804 0.5589 - . ID=CGI_10003215; scaffold39196 WUBlastX DNA_Merlin 49826 50152 73 + . . scaffold39196 GLEAN mRNA 39677 52332 0.583111 + . ID=CGI_10003218; scaffold222 WUBlastX DNA_hAT 31801 32340 90 + . . scaffold222 GLEAN mRNA 28929 43685 0.659955 + . ID=CGI_10007121; scaffold35266 WUBlastX LTR_Copia 9418 9720 105 + . . scaffold35266 GLEAN mRNA 5619 15884 1 + . ID=CGI_10001434; scaffold258 WUBlastX LINE_CR1-L2 318282 318827 75 + . . scaffold258 GLEAN mRNA 316614 320715 1 + . ID=CGI_10020057; scaffold347 WUBlastX LINE_CR1 261341 261961 40 - . . scaffold347 GLEAN mRNA 231355 265361 0.350161 - . ID=CGI_10021787; scaffold507 WUBlastX LINE_L2 270952 271167 42 + . . scaffold507 GLEAN mRNA 254357 273838 0.999949 - . ID=CGI_10019093; scaffold828 WUBlastX LTR_Gypsy 97448 97972 81 - . . scaffold828 GLEAN mRNA 93404 108093 0.999999 - . ID=CGI_10007366; scaffold962 WUBlastX LTR_ERVL 17614 17832 59 + . . scaffold962 GLEAN mRNA 17446 17832 0.999586 + . ID=CGI_10027631; scaffold41560 WUBlastX LINE_CR1 86457 86555 37 - . . scaffold41560 GLEAN mRNA 83554 88131 1 - . ID=CGI_10005282; scaffold1473 WUBlastX LINE_L2 17173 17445 81 - . . scaffold1473 GLEAN mRNA 13162 33966 0.99911 + . ID=CGI_10003509; scaffold271 WUBlastX LTR_Gypsy 781080 781913 48 - . . scaffold271 GLEAN mRNA 780567 782249 0.988234 - . ID=CGI_10024495; scaffold38900 WUBlastX DNA_Harbinger 18349 18528 55 - . . scaffold38900 GLEAN mRNA 4144 21771 0.999939 - . ID=CGI_10003039; scaffold1329 WUBlastX DNA_hAT-Tag1 91822 92319 29 - . . scaffold1329 GLEAN mRNA 77218 94406 0.816606 - . ID=CGI_10015782; C35006 WUBlastX DNA_IS4EU 2385 2642 61 - . . C35006 GLEAN mRNA 2016 7654 0.999998 - . ID=CGI_10001396; scaffold236 WUBlastX DNA_Kolobok 231620 231766 71 - . . scaffold236 GLEAN mRNA 231446 232793 0.958487 - . ID=CGI_10018140; scaffold1221 WUBlastX LINE_L1 526435 526656 36 + . . scaffold1221 GLEAN mRNA 522455 543272 0.967384 + . ID=CGI_10019749; scaffold41816 WUBlastX LINE_L1 88537 88686 101 - . . scaffold41816 GLEAN mRNA 84334 89370 0.999542 + . ID=CGI_10005649; scaffold42788 WUBlastX DNA_TcMar-Tc1 67707 68066 83 + . . scaffold42788 GLEAN mRNA 24369 91602 0.998319 - . ID=CGI_10007754; scaffold1159 WUBlastX LINE_CR1 160374 160580 33 + . . scaffold1159 GLEAN mRNA 140710 162801 0.966335 + . ID=CGI_10007977; scaffold1350 WUBlastX LINE_RTE-X 397661 397804 41 - . . scaffold1350 GLEAN mRNA 393414 411683 0.728523 + . ID=CGI_10017317; scaffold833 WUBlastX LINE_RTE-BovB 240516 240656 89 + . . scaffold833 GLEAN mRNA 240516 240821 0.96892 + . ID=CGI_10016737; scaffold35994 WUBlastX DNA_Maverick 3543 3797 20 - . . scaffold35994 GLEAN mRNA 1476 13595 0.650997 + . ID=CGI_10001674; scaffold35994 WUBlastX DNA_Maverick 3803 4312 26 - . . scaffold35994 GLEAN mRNA 1476 13595 0.650997 + . ID=CGI_10001674; scaffold39268 WUBlastX DNA_MuDR 63398 63640 86 + . . scaffold39268 GLEAN mRNA 61831 68309 0.898511 + . ID=CGI_10003276; scaffold126 WUBlastX DNA_MuDR 579025 579267 86 + . . scaffold126 GLEAN mRNA 576864 580670 0.999598 + . ID=CGI_10019200; scaffold301 WUBlastX DNA_Sola 956451 956660 59 - . . scaffold301 GLEAN mRNA 935860 957762 0.976661 - . ID=CGI_10026737; scaffold301 WUBlastX DNA_Sola 957526 957729 36 - . . scaffold301 GLEAN mRNA 935860 957762 0.976661 - . ID=CGI_10026737; scaffold43242 WUBlastX DNA_TcMar-Tc2 154565 154789 51 + . . scaffold43242 GLEAN mRNA 154565 157582 0.118333 + . ID=CGI_10009546; scaffold453 WUBlastX LINE_CR1-L2 314406 314495 25 - . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold1093 WUBlastX LINE_L2 82761 82955 39 + . . scaffold1093 GLEAN mRNA 77464 87990 0.558336 + . ID=CGI_10019787; scaffold929 WUBlastX LINE_CR1-L2 124656 125306 26 + . . scaffold929 GLEAN mRNA 116400 138361 0.987262 + . ID=CGI_10006345; scaffold211 WUBlastX LINE_L2 701283 701417 29 + . . scaffold211 GLEAN mRNA 691120 715917 0.0754063 + . ID=CGI_10026960; scaffold105 WUBlastX DNA_hAT-Ac 317526 317606 56 - . . scaffold105 GLEAN mRNA 316924 320165 1 + . ID=CGI_10015755; scaffold105 WUBlastX DNA_hAT-Ac 317633 317767 64 - . . scaffold105 GLEAN mRNA 316924 320165 1 + . ID=CGI_10015755; scaffold1249 WUBlastX LINE_L2 261492 261569 22 - . . scaffold1249 GLEAN mRNA 253670 268651 0.545459 - . ID=CGI_10019058; scaffold664 WUBlastX DNA_TcMar-Marin 656069 656146 58 - . . scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold664 WUBlastX DNA_TcMar-Marin 656718 656783 36 - . . scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold867 WUBlastX LINE_L1-Tx1 256030 256272 84 + . . scaffold867 GLEAN mRNA 253182 264678 0.938203 - . ID=CGI_10026215; scaffold789 WUBlastX LINE_L1 453845 453892 21 + . . scaffold789 GLEAN mRNA 449746 456527 1 + . ID=CGI_10017205; scaffold40208 WUBlastX LINE_L1-Tx1 83545 83847 36 + . . scaffold40208 GLEAN mRNA 72712 87059 0.842413 + . ID=CGI_10003956; scaffold451 WUBlastX LINE_L1 87696 88256 54 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold1210 WUBlastX LINE_RTE-X 112508 112852 73 + . . scaffold1210 GLEAN mRNA 93719 132019 0.550359 - . ID=CGI_10014599; scaffold1028 WUBlastX LINE_RTE-X 42081 42257 39 + . . scaffold1028 GLEAN mRNA 38359 105235 0.597726 - . ID=CGI_10009718; scaffold39804 WUBlastX LINE_RTE-X 54167 54457 108 - . . scaffold39804 GLEAN mRNA 45401 55574 0.999999 - . ID=CGI_10003620; scaffold752 WUBlastX LINE_RTE-X 15848 16393 62 - . . scaffold752 GLEAN mRNA 9483 39806 0.831804 + . ID=CGI_10010038; scaffold563 WUBlastX DNA_TcMar-Marin 505578 505799 87 - . . scaffold563 GLEAN mRNA 469996 513756 0.653133 + . ID=CGI_10019843; scaffold479 WUBlastX LTR_DIRS 83403 83693 55 + . . scaffold479 GLEAN mRNA 82405 99723 0.898056 + . ID=CGI_10015682; scaffold39804 WUBlastX LINE_L1-Tx1 17692 17949 44 - . . scaffold39804 GLEAN mRNA 15936 20719 1 + . ID=CGI_10003618; scaffold3 WUBlastX LINE_L1-Tx1 369630 370046 50 - . . scaffold3 GLEAN mRNA 362573 374344 0.984893 - . ID=CGI_10027291; scaffold453 WUBlastX LINE_CR1-L2 315121 315180 51 - . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold1337 WUBlastX LINE_L2 281979 282545 82 - . . scaffold1337 GLEAN mRNA 281481 282728 0.999981 - . ID=CGI_10012842; scaffold42 WUBlastX LINE_L2 206806 206868 20 + . . scaffold42 GLEAN mRNA 204584 223955 0.545569 + . ID=CGI_10018912; scaffold1159 WUBlastX LINE_L2 161360 161767 82 + . . scaffold1159 GLEAN mRNA 140710 162801 0.966335 + . ID=CGI_10007977; scaffold481 WUBlastX LINE_L2 1209765 1209902 62 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold1066 WUBlastX LTR_Ngaro 179377 179772 55 - . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold40440 WUBlastX LTR_Ngaro 54737 55063 24 + . . scaffold40440 GLEAN mRNA 51085 65707 0.320377 - . ID=CGI_10004144; scaffold40440 WUBlastX LTR_Ngaro 55240 55485 71 + . . scaffold40440 GLEAN mRNA 51085 65707 0.320377 - . ID=CGI_10004144; scaffold1863 WUBlastX DNA_Harbinger 372479 373117 91 + . . scaffold1863 GLEAN mRNA 370491 381418 0.892726 + . ID=CGI_10016696; scaffold1722 WUBlastX DNA_IS4EU 13178 13942 94 - . . scaffold1722 GLEAN mRNA 11939 32243 0.51382 - . ID=CGI_10014865; scaffold952 WUBlastX LINE_L1 23292 23495 58 + . . scaffold952 GLEAN mRNA 12544 26052 0.999676 + . ID=CGI_10002898; scaffold784 WUBlastX LINE_L1 186619 186900 29 + . . scaffold784 GLEAN mRNA 178600 195281 0.744931 - . ID=CGI_10024415; C29438 WUBlastX LINE_RTE-X 2525 2746 99 + . . C29438 GLEAN mRNA 533 5889 1 + . ID=CGI_10000534; scaffold477 WUBlastX LINE_RTE-X 50767 50979 103 - . . scaffold477 GLEAN mRNA 46689 64755 0.855741 + . ID=CGI_10012309; scaffold35014 WUBlastX DNA_PiggyBac 13162 13533 80 + . . scaffold35014 GLEAN mRNA 9316 21495 0.996281 + . ID=CGI_10001389; scaffold1024 WUBlastX DNA_PiggyBac 1080266 1080541 90 - . . scaffold1024 GLEAN mRNA 1078261 1083838 0.826098 - . ID=CGI_10028565; scaffold890 WUBlastX DNA_TcMar-Tc1 83401 83868 70 - . . scaffold890 GLEAN mRNA 81187 101968 1 - . ID=CGI_10014464; scaffold34594 WUBlastX LINE_L2 6663 7262 80 - . . scaffold34594 GLEAN mRNA 5594 16260 0.992512 + . ID=CGI_10001317; scaffold1086 WUBlastX LINE_CR1 101911 102408 107 - . . scaffold1086 GLEAN mRNA 71811 104849 0.15447 + . ID=CGI_10021931; scaffold37500 WUBlastX LINE_CR1-L2 31402 31680 99 - . . scaffold37500 GLEAN mRNA 16467 40519 0.193393 - . ID=CGI_10002382; scaffold42528 WUBlastX LINE_CR1-L2 132706 133209 55 - . . scaffold42528 GLEAN mRNA 99418 143145 0.451859 - . ID=CGI_10007209; scaffold338 WUBlastX LINE_CR1-L2 50657 51028 83 - . . scaffold338 GLEAN mRNA 47890 56497 0.70241 + . ID=CGI_10011184; scaffold686 WUBlastX LINE_CR1-L2 2521 2796 108 - . . scaffold686 GLEAN mRNA 377 5602 0.998023 - . ID=CGI_10004460; scaffold35266 WUBlastX LTR_Copia 11224 11424 88 - . . scaffold35266 GLEAN mRNA 5619 15884 1 + . ID=CGI_10001434; scaffold35266 WUBlastX LTR_Copia 11769 12287 25 - . . scaffold35266 GLEAN mRNA 5619 15884 1 + . ID=CGI_10001434; scaffold117 WUBlastX LINE_CR1 53134 53238 53 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold42836 WUBlastX LTR_Gypsy 107168 107269 25 + . . scaffold42836 GLEAN mRNA 101715 122664 0.986039 + . ID=CGI_10007860; scaffold32470 WUBlastX LTR_Gypsy 1135 1563 91 - . . scaffold32470 GLEAN mRNA 176 4292 1 + . ID=CGI_10000898; scaffold524 WUBlastX DNA_Helitron 251008 251556 116 - . . scaffold524 GLEAN mRNA 241978 255594 0.734579 - . ID=CGI_10016606; scaffold461 WUBlastX LTR_Gypsy 507230 508087 43 + . . scaffold461 GLEAN mRNA 502998 509730 0.979735 + . ID=CGI_10020117; scaffold1024 WUBlastX DNA_Kolobok 289749 289997 110 + . . scaffold1024 GLEAN mRNA 286016 307543 0.666664 - . ID=CGI_10028532; scaffold1669 WUBlastX DNA_Kolobok 9502 9792 111 + . . scaffold1669 GLEAN mRNA 1110 11588 0.999673 - . ID=CGI_10001412; scaffold4 WUBlastX LINE_RTE-X 459288 459482 67 + . . scaffold4 GLEAN mRNA 420407 460487 0.960328 - . ID=CGI_10021179; scaffold980 WUBlastX LINE_RTE-X 164936 165277 36 + . . scaffold980 GLEAN mRNA 163810 172327 0.499535 - . ID=CGI_10019213; scaffold79 WUBlastX LINE_RTE-X 266082 266357 66 + . . scaffold79 GLEAN mRNA 257196 271359 0.644901 + . ID=CGI_10024620; scaffold952 WUBlastX LINE_L1-Tx1 23165 23206 22 + . . scaffold952 GLEAN mRNA 12544 26052 0.999676 + . ID=CGI_10002898; scaffold952 WUBlastX LINE_L1-Tx1 23497 23778 61 + . . scaffold952 GLEAN mRNA 12544 26052 0.999676 + . ID=CGI_10002898; scaffold42836 WUBlastX LTR_Gypsy 161416 161508 21 + . . scaffold42836 GLEAN mRNA 143632 181424 1 + . ID=CGI_10007862; scaffold35406 WUBlastX LTR_Gypsy 9965 10636 112 - . . scaffold35406 GLEAN mRNA 1505 18996 0.688101 - . ID=CGI_10001499; scaffold1885 WUBlastX LINE_L2 360051 360518 103 - . . scaffold1885 GLEAN mRNA 350853 371060 0.999501 + . ID=CGI_10013905; scaffold1323 WUBlastX LTR_Ngaro 75513 75830 37 - . . scaffold1323 GLEAN mRNA 62759 90642 0.99865 + . ID=CGI_10009082; scaffold1323 WUBlastX LTR_Ngaro 75844 76134 58 - . . scaffold1323 GLEAN mRNA 62759 90642 0.99865 + . ID=CGI_10009082; scaffold43648 WUBlastX DNA_Kolobok 235871 236047 77 + . . scaffold43648 GLEAN mRNA 231599 237776 0.973881 - . ID=CGI_10011593; scaffold1599 WUBlastX LTR_Gypsy 239899 240027 22 - . . scaffold1599 GLEAN mRNA 238916 249872 0.993706 - . ID=CGI_10027143; scaffold337 WUBlastX LINE_L1 1078524 1078856 85 + . . scaffold337 GLEAN mRNA 1058886 1083021 0.758954 + . ID=CGI_10028091; scaffold1589 WUBlastX LINE_L1 380772 381461 93 + . . scaffold1589 GLEAN mRNA 370243 390217 0.643157 + . ID=CGI_10024115; scaffold34016 WUBlastX LINE_Penelope 3285 3821 100 + . . scaffold34016 GLEAN mRNA 449 13407 0.445355 - . ID=CGI_10001181; scaffold240 WUBlastX LINE_Penelope 170609 170725 28 + . . scaffold240 GLEAN mRNA 169762 171676 1 + . ID=CGI_10007851; scaffold43258 WUBlastX LINE_RTE-X 142300 142494 20 - . . scaffold43258 GLEAN mRNA 134740 154295 0.483992 + . ID=CGI_10009634; scaffold271 WUBlastX LINE_L1-Tx1 470900 471244 28 - . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold1157 WUBlastX LINE_CR1-L2 228112 228279 44 - . . scaffold1157 GLEAN mRNA 212503 240416 0.462871 - . ID=CGI_10011221; scaffold683 WUBlastX LINE_CR1-L2 160271 160399 70 - . . scaffold683 GLEAN mRNA 156724 197942 0.700222 + . ID=CGI_10010360; scaffold35014 WUBlastX DNA_PiggyBac 15972 16160 83 + . . scaffold35014 GLEAN mRNA 9316 21495 0.996281 + . ID=CGI_10001389; scaffold424 WUBlastX DNA_hAT-Ac 94951 95172 20 + . . scaffold424 GLEAN mRNA 91671 98594 0.990391 - . ID=CGI_10014353; scaffold412 WUBlastX LTR_Ngaro 73060 73275 67 + . . scaffold412 GLEAN mRNA 49163 134272 0.261275 - . ID=CGI_10018559; scaffold271 WUBlastX DNA_Harbinger 830367 830684 98 - . . scaffold271 GLEAN mRNA 809860 849502 0.997113 - . ID=CGI_10024500; scaffold579 WUBlastX DNA_TcMar-Tc1 206964 207149 36 + . . scaffold579 GLEAN mRNA 193436 221323 0.863149 + . ID=CGI_10011264; scaffold676 WUBlastX LINE_RTE-BovB 576812 577003 91 - . . scaffold676 GLEAN mRNA 560023 599101 0.378138 + . ID=CGI_10021432; scaffold1159 WUBlastX LINE_L2 160407 160583 60 + . . scaffold1159 GLEAN mRNA 140710 162801 0.966335 + . ID=CGI_10007977; scaffold595 WUBlastX LTR_Ngaro 92576 93196 84 - . . scaffold595 GLEAN mRNA 66058 94029 0.989948 - . ID=CGI_10005863; scaffold1423 WUBlastX LINE_RTE-X 714036 714395 35 + . . scaffold1423 GLEAN mRNA 702823 732700 0.440207 - . ID=CGI_10025438; scaffold43708 WUBlastX DNA_Sola 75801 76199 103 + . . scaffold43708 GLEAN mRNA 71613 92556 0.999995 + . ID=CGI_10011967; scaffold143 WUBlastX LINE_CR1-L2 215096 215515 88 + . . scaffold143 GLEAN mRNA 211939 221171 0.564856 - . ID=CGI_10010016; scaffold42144 WUBlastX LTR_Gypsy 128028 128801 131 - . . scaffold42144 GLEAN mRNA 126947 143095 0.937847 + . ID=CGI_10006249; scaffold1788 WUBlastX RC_Helitron 45790 45939 68 - . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold36526 WUBlastX LINE_L1 21483 21950 76 - . . scaffold36526 GLEAN mRNA 10575 29087 0.999676 + . ID=CGI_10002008; scaffold41798 WUBlastX DNA_Kolobok 114684 114851 87 - . . scaffold41798 GLEAN mRNA 114675 115137 1 - . ID=CGI_10005657; scaffold145 WUBlastX DNA_TcMar-Fot1 649658 650116 68 + . . scaffold145 GLEAN mRNA 640130 678599 0.569648 - . ID=CGI_10026560; scaffold1191 WUBlastX DNA_NOF 73854 74585 85 - . . scaffold1191 GLEAN mRNA 65394 88286 0.517666 - . ID=CGI_10005211; scaffold1191 WUBlastX DNA_NOF 74823 75002 48 - . . scaffold1191 GLEAN mRNA 65394 88286 0.517666 - . ID=CGI_10005211; scaffold39268 WUBlastX DNA_MuDR 64111 64428 69 + . . scaffold39268 GLEAN mRNA 61831 68309 0.898511 + . ID=CGI_10003276; scaffold116 WUBlastX LINE_RTE-X 212216 212386 39 + . . scaffold116 GLEAN mRNA 199454 222023 0.8905 - . ID=CGI_10009421; scaffold210 WUBlastX LINE_RTE-X 148390 148917 81 + . . scaffold210 GLEAN mRNA 130765 152251 0.999676 - . ID=CGI_10015883; scaffold619 WUBlastX LINE_RTE-X 778918 779232 154 - . . scaffold619 GLEAN mRNA 775777 792970 0.999676 - . ID=CGI_10025785; scaffold686 WUBlastX DNA_PiggyBac 31889 32035 32 + . . scaffold686 GLEAN mRNA 23498 37370 0.50665 - . ID=CGI_10004462; scaffold686 WUBlastX DNA_PiggyBac 32956 33309 54 + . . scaffold686 GLEAN mRNA 23498 37370 0.50665 - . ID=CGI_10004462; scaffold1221 WUBlastX LINE_RTE-X 93517 93927 94 + . . scaffold1221 GLEAN mRNA 84840 95252 0.99967 - . ID=CGI_10019730; scaffold1097 WUBlastX LINE_RTE-X 796685 796759 46 + . . scaffold1097 GLEAN mRNA 796138 800546 1 + . ID=CGI_10024550; scaffold419 WUBlastX LINE_L1-Tx1 1077910 1078035 21 + . . scaffold419 GLEAN mRNA 1076054 1088367 0.937506 + . ID=CGI_10028386; scaffold488 WUBlastX LINE_L2 45248 45541 160 - . . scaffold488 GLEAN mRNA 23091 53480 0.998314 - . ID=CGI_10005407; scaffold1462 WUBlastX LINE_L2 159480 159701 117 - . . scaffold1462 GLEAN mRNA 126068 169270 0.382353 + . ID=CGI_10014372; scaffold42840 WUBlastX LINE_CR1 190822 191133 55 + . . scaffold42840 GLEAN mRNA 176465 192129 0.833079 - . ID=CGI_10007840; scaffold514 WUBlastX LTR_Gypsy 471724 472077 103 + . . scaffold514 GLEAN mRNA 444665 473776 0.661186 - . ID=CGI_10018365; scaffold514 WUBlastX LTR_Gypsy 472414 472674 59 + . . scaffold514 GLEAN mRNA 444665 473776 0.661186 - . ID=CGI_10018365; scaffold1789 WUBlastX DNA_TcMar-Tc1 26067 26219 69 - . . scaffold1789 GLEAN mRNA 24055 30627 0.651132 - . ID=CGI_10003176; scaffold852 WUBlastX DNA_IS4EU 51471 51782 59 - . . scaffold852 GLEAN mRNA 46446 54395 0.990384 - . ID=CGI_10012034; scaffold852 WUBlastX DNA_IS4EU 51859 51927 34 - . . scaffold852 GLEAN mRNA 46446 54395 0.990384 - . ID=CGI_10012034; scaffold852 WUBlastX DNA_IS4EU 52009 52047 22 - . . scaffold852 GLEAN mRNA 46446 54395 0.990384 - . ID=CGI_10012034; scaffold852 WUBlastX DNA_IS4EU 52515 52598 54 - . . scaffold852 GLEAN mRNA 46446 54395 0.990384 - . ID=CGI_10012034; scaffold1097 WUBlastX LINE_L1 417061 417765 139 - . . scaffold1097 GLEAN mRNA 400759 423931 0.739463 - . ID=CGI_10024529; scaffold1377 WUBlastX LINE_L1 106879 107070 139 + . . scaffold1377 GLEAN mRNA 106879 107493 0.962665 + . ID=CGI_10008620; scaffold143 WUBlastX LINE_L1 192071 192775 139 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold41754 WUBlastX LINE_RTE-X 88595 88744 37 + . . scaffold41754 GLEAN mRNA 79569 95321 0.84848 - . ID=CGI_10005558; scaffold41754 WUBlastX LINE_RTE-X 88815 89123 67 + . . scaffold41754 GLEAN mRNA 79569 95321 0.84848 - . ID=CGI_10005558; scaffold1372 WUBlastX LINE_RTE-X 109844 110014 97 + . . scaffold1372 GLEAN mRNA 106818 117508 0.255831 - . ID=CGI_10015663; scaffold40960 WUBlastX LINE_RTE-X 6950 7408 120 - . . scaffold40960 GLEAN mRNA 4964 19748 0.995292 - . ID=CGI_10004560; scaffold42076 WUBlastX DNA_TcMar-Tc1 29210 29497 31 + . . scaffold42076 GLEAN mRNA 21711 47909 0.941371 + . ID=CGI_10006082; scaffold352 WUBlastX LTR_Gypsy 153195 153515 71 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold43552 WUBlastX LTR_Gypsy-Cigr 221662 223950 873 - . . scaffold43552 GLEAN mRNA 204428 227902 0.829194 - . ID=CGI_10011023; scaffold1228 WUBlastX LINE_L2 475137 475901 398 - . . scaffold1228 GLEAN mRNA 466655 478477 0.528865 - . ID=CGI_10017006; scaffold1228 WUBlastX LINE_L2 475840 476595 522 - . . scaffold1228 GLEAN mRNA 466655 478477 0.528865 - . ID=CGI_10017006; C35532 WUBlastX LTR_Ngaro 13260 14828 960 - . . C35532 GLEAN mRNA 11931 21500 0.999947 - . ID=CGI_10001547; scaffold1806 WUBlastX LTR_Gypsy 84394 84693 160 - . . scaffold1806 GLEAN mRNA 70668 89122 0.54485 - . ID=CGI_10006158; scaffold1806 WUBlastX LTR_Gypsy 84650 85675 575 - . . scaffold1806 GLEAN mRNA 70668 89122 0.54485 - . ID=CGI_10006158; scaffold1806 WUBlastX LTR_Gypsy 86367 87068 287 - . . scaffold1806 GLEAN mRNA 70668 89122 0.54485 - . ID=CGI_10006158; scaffold337 WUBlastX LINE_L1-Tx1 1080399 1080827 84 + . . scaffold337 GLEAN mRNA 1058886 1083021 0.758954 + . ID=CGI_10028091; scaffold1785 WUBlastX LINE_CR1 544242 544388 64 + . . scaffold1785 GLEAN mRNA 522476 550245 0.457905 + . ID=CGI_10024389; scaffold825 WUBlastX LTR_Ngaro 119236 119283 20 + . . scaffold825 GLEAN mRNA 107602 120026 0.634689 - . ID=CGI_10012705; scaffold986 WUBlastX DNA_hAT-Ac 46142 46516 38 + . . scaffold986 GLEAN mRNA 30562 55582 0.15443 + . ID=CGI_10009957; scaffold43242 WUBlastX DNA_Kolobok 33111 33308 57 + . . scaffold43242 GLEAN mRNA 27154 33595 0.878599 + . ID=CGI_10009544; scaffold43648 WUBlastX DNA_Kolobok 236730 236921 70 - . . scaffold43648 GLEAN mRNA 231599 237776 0.973881 - . ID=CGI_10011593; scaffold41598 WUBlastX DNA_PiggyBac 66464 66574 53 - . . scaffold41598 GLEAN mRNA 59426 74794 0.449575 - . ID=CGI_10005304; scaffold41598 WUBlastX DNA_PiggyBac 66808 66969 36 - . . scaffold41598 GLEAN mRNA 59426 74794 0.449575 - . ID=CGI_10005304; scaffold1737 WUBlastX LINE_RTE-X 462151 462471 76 - . . scaffold1737 GLEAN mRNA 447854 462520 0.999999 + . ID=CGI_10018255; scaffold37500 WUBlastX LINE_CR1-L2 29889 30452 54 - . . scaffold37500 GLEAN mRNA 16467 40519 0.193393 - . ID=CGI_10002382; scaffold1696 WUBlastX LTR_Pao 3286 4203 818 + . . scaffold1696 GLEAN mRNA 261 23562 0.414457 - . ID=CGI_10003674; scaffold117 WUBlastX LINE_CR1 53849 53989 115 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold712 WUBlastX LINE_R2-Hero 343073 343858 130 + . . scaffold712 GLEAN mRNA 336086 347992 0.995237 + . ID=CGI_10016485; C34256 WUBlastX DNA_Kolobok 10416 10673 89 + . . C34256 GLEAN mRNA 10416 11159 1 + . ID=CGI_10001258; scaffold226 WUBlastX LINE_RTE-X 1052839 1053249 44 - . . scaffold226 GLEAN mRNA 1050620 1061522 0.99513 - . ID=CGI_10025399; scaffold269 WUBlastX LINE_RTE-X 456031 456510 71 + . . scaffold269 GLEAN mRNA 436625 461028 0.269378 - . ID=CGI_10019006; scaffold1663 WUBlastX LINE_RTE-X 17689 18027 32 + . . scaffold1663 GLEAN mRNA 14275 33810 0.998969 - . ID=CGI_10009863; scaffold1710 WUBlastX LINE_RTE-X 216207 216689 82 - . . scaffold1710 GLEAN mRNA 213328 218333 1 - . ID=CGI_10022347; scaffold1221 WUBlastX LTR_Gypsy 67015 67824 549 - . . scaffold1221 GLEAN mRNA 56411 69596 0.696179 + . ID=CGI_10019728; C29438 WUBlastX LINE_L2 3436 3993 55 + . . C29438 GLEAN mRNA 533 5889 1 + . ID=CGI_10000534; scaffold535 WUBlastX LINE_CR1-L2 565655 565786 40 + . . scaffold535 GLEAN mRNA 563508 572309 0.883286 + . ID=CGI_10020301; scaffold334 WUBlastX DNA_hAT 104303 104737 113 - . . scaffold334 GLEAN mRNA 104300 112166 0.460378 - . ID=CGI_10025911; scaffold1574 WUBlastX LTR_Gypsy 452567 452884 48 + . . scaffold1574 GLEAN mRNA 452128 459537 0.999957 + . ID=CGI_10016335; scaffold36794 WUBlastX LTR_Ngaro 4940 6133 93 + . . scaffold36794 GLEAN mRNA 3731 8474 0.499919 + . ID=CGI_10002119; scaffold1706 WUBlastX LINE_L1 45846 46556 71 + . . scaffold1706 GLEAN mRNA 37786 56373 0.330403 - . ID=CGI_10003662; scaffold1706 WUBlastX LINE_L1 46645 46788 35 + . . scaffold1706 GLEAN mRNA 37786 56373 0.330403 - . ID=CGI_10003662; scaffold1267 WUBlastX LINE_RTE-X 1045200 1045442 124 + . . scaffold1267 GLEAN mRNA 1030598 1050254 0.995555 + . ID=CGI_10025181; scaffold143 WUBlastX LINE_RTE-BovB 186017 186073 20 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold22 WUBlastX LINE_L1-Tx1 1082672 1082926 88 + . . scaffold22 GLEAN mRNA 1079633 1088835 0.644932 - . ID=CGI_10028896; scaffold85 WUBlastX LTR_Gypsy-Cigr 353334 354164 646 - . . scaffold85 GLEAN mRNA 332841 357883 0.849566 - . ID=CGI_10020703; scaffold1785 WUBlastX LINE_RTE-X 35066 37384 1064 + . . scaffold1785 GLEAN mRNA 32641 38261 0.430327 - . ID=CGI_10024350; scaffold77 WUBlastX LINE_RTE-X 1030591 1033746 926 - . . scaffold77 GLEAN mRNA 1025613 1033746 0.999911 - . ID=CGI_10028017; scaffold99 WUBlastX LINE_CR1 357388 357966 167 + . . scaffold99 GLEAN mRNA 346755 358299 0.999992 + . ID=CGI_10021201; scaffold1791 WUBlastX LTR_Ngaro 97092 97958 114 + . . scaffold1791 GLEAN mRNA 83527 103062 0.896369 - . ID=CGI_10007868; scaffold1882 WUBlastX LTR_DIRS 147918 148403 75 - . . scaffold1882 GLEAN mRNA 139430 150969 0.999129 + . ID=CGI_10010506; scaffold1882 WUBlastX LTR_DIRS 148929 149744 73 - . . scaffold1882 GLEAN mRNA 139430 150969 0.999129 + . ID=CGI_10010506; scaffold40104 WUBlastX DNA_Kolobok-IS4 35526 35669 29 + . . scaffold40104 GLEAN mRNA 23202 39290 0.364513 - . ID=CGI_10003867; scaffold1705 WUBlastX LINE_RTE-BovB 178119 178283 113 + . . scaffold1705 GLEAN mRNA 168554 181759 0.810172 - . ID=CGI_10007474; scaffold43302 WUBlastX DNA_PiggyBac 57821 58351 177 + . . scaffold43302 GLEAN mRNA 44692 96293 0.992844 + . ID=CGI_10009758; scaffold38448 WUBlastX LTR_Ngaro 32634 33083 108 - . . scaffold38448 GLEAN mRNA 31492 37691 0.999937 + . ID=CGI_10002779; scaffold366 WUBlastX DNA_Harbinger 119128 119361 82 - . . scaffold366 GLEAN mRNA 106879 123133 0.490969 + . ID=CGI_10007776; scaffold366 WUBlastX DNA_Harbinger 119340 119579 92 - . . scaffold366 GLEAN mRNA 106879 123133 0.490969 + . ID=CGI_10007776; scaffold772 WUBlastX LINE_RTE-X 338912 339397 117 + . . scaffold772 GLEAN mRNA 336765 344045 0.544674 + . ID=CGI_10016594; scaffold40134 WUBlastX LINE_RTE-X 69800 69946 49 + . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold41560 WUBlastX LINE_RTE-X 109161 109610 125 + . . scaffold41560 GLEAN mRNA 106439 114729 1 + . ID=CGI_10005285; scaffold1301 WUBlastX LINE_RTE-X 955591 956124 138 + . . scaffold1301 GLEAN mRNA 940827 961246 0.536299 + . ID=CGI_10027751; scaffold1094 WUBlastX LINE_RTE-X 230900 231433 138 + . . scaffold1094 GLEAN mRNA 207588 241472 0.989752 + . ID=CGI_10021816; scaffold1221 WUBlastX LINE_L1-Tx1 523216 523650 166 + . . scaffold1221 GLEAN mRNA 522455 543272 0.967384 + . ID=CGI_10019749; scaffold6 WUBlastX LINE_Jockey 243743 243850 24 - . . scaffold6 GLEAN mRNA 243521 244840 0.993546 - . ID=CGI_10022303; scaffold168 WUBlastX DNA_TcMar-Tc1 1062983 1063270 171 + . . scaffold168 GLEAN mRNA 1061165 1068516 1 + . ID=CGI_10025626; scaffold168 WUBlastX DNA_TcMar-Tc1 1062983 1063270 171 + . . scaffold168 GLEAN mRNA 1061468 1075146 0.901342 - . ID=CGI_10025627; scaffold1087 WUBlastX LTR_Gypsy 12928 14586 679 + . . scaffold1087 GLEAN mRNA 1458 16224 0.544547 + . ID=CGI_10001183; scaffold870 WUBlastX DNA_hAT 52423 52791 195 + . . scaffold870 GLEAN mRNA 44819 52818 0.999949 + . ID=CGI_10007493; scaffold43562 WUBlastX LINE_CR1 167038 167133 34 + . . scaffold43562 GLEAN mRNA 166638 176461 0.999676 + . ID=CGI_10011038; scaffold43562 WUBlastX LINE_CR1 167038 167133 34 + . . scaffold43562 GLEAN mRNA 156935 180007 0.944081 - . ID=CGI_10011037; scaffold911 WUBlastX LTR_Gypsy 95611 95775 72 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold853 WUBlastX LTR_Gypsy 449121 449189 20 - . . scaffold853 GLEAN mRNA 448693 455013 0.999949 - . ID=CGI_10017517; scaffold517 WUBlastX LINE_L1 199445 199699 58 - . . scaffold517 GLEAN mRNA 188444 202746 0.541804 + . ID=CGI_10008984; scaffold43664 WUBlastX LINE_RTE-X 213794 213946 66 + . . scaffold43664 GLEAN mRNA 204407 215793 0.656307 - . ID=CGI_10011717; scaffold1402 WUBlastX DNA_TcMar-Tc1 404127 404864 94 + . . scaffold1402 GLEAN mRNA 402740 419521 0.863535 + . ID=CGI_10017593; scaffold1518 WUBlastX LINE_L2 286024 286734 323 + . . scaffold1518 GLEAN mRNA 258241 287104 0.241996 + . ID=CGI_10017803; scaffold1518 WUBlastX LINE_L2 286682 287104 721 + . . scaffold1518 GLEAN mRNA 258241 287104 0.241996 + . ID=CGI_10017803; scaffold191 WUBlastX LINE_CR1-L2 182326 182415 21 + . . scaffold191 GLEAN mRNA 173889 184742 0.717223 - . ID=CGI_10022414; scaffold165 WUBlastX LTR_Pao 198520 198783 47 - . . scaffold165 GLEAN mRNA 195130 200984 1 + . ID=CGI_10015323; scaffold1084 WUBlastX LTR_DIRS 148507 148818 186 + . . scaffold1084 GLEAN mRNA 143113 160475 0.702333 + . ID=CGI_10010078; scaffold172 WUBlastX LTR_Ngaro 278846 279136 34 - . . scaffold172 GLEAN mRNA 274118 285723 0.998306 - . ID=CGI_10013528; scaffold198 WUBlastX DNA_Harbinger 129368 129568 96 - . . scaffold198 GLEAN mRNA 125037 150103 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_Harbinger 129368 129568 96 - . . scaffold198 GLEAN mRNA 129155 148314 0.927276 - . ID=CGI_10027796; scaffold198 WUBlastX DNA_Harbinger 129709 129813 83 - . . scaffold198 GLEAN mRNA 125037 150103 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_Harbinger 129709 129813 83 - . . scaffold198 GLEAN mRNA 129155 148314 0.927276 - . ID=CGI_10027796; scaffold198 WUBlastX DNA_Harbinger 130062 130259 72 - . . scaffold198 GLEAN mRNA 125037 150103 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_Harbinger 130062 130259 72 - . . scaffold198 GLEAN mRNA 129155 148314 0.927276 - . ID=CGI_10027796; scaffold42648 WUBlastX LTR_Gypsy 168524 169135 80 - . . scaffold42648 GLEAN mRNA 167771 174774 0.98388 - . ID=CGI_10007395; scaffold1174 WUBlastX LINE_RTE-BovB 253947 253987 39 - . . scaffold1174 GLEAN mRNA 241580 253987 0.484872 - . ID=CGI_10026031; scaffold336 WUBlastX LINE_RTE-X 169209 169739 178 + . . scaffold336 GLEAN mRNA 153891 174105 1 - . ID=CGI_10012567; scaffold336 WUBlastX LINE_RTE-X 169721 169804 36 + . . scaffold336 GLEAN mRNA 153891 174105 1 - . ID=CGI_10012567; scaffold88 WUBlastX LINE_L1-Tx1 23524 24081 36 - . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX LINE_L1-Tx1 23524 24081 36 - . . scaffold88 GLEAN mRNA 22316 33699 0.444301 - . ID=CGI_10011115; scaffold149 WUBlastX LINE_L1-Tx1 192117 192629 114 + . . scaffold149 GLEAN mRNA 179199 193397 0.990232 - . ID=CGI_10025295; scaffold1066 WUBlastX LTR_Gypsy 173339 175291 1282 + . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold35180 WUBlastX LINE_L1-Tx1 19558 20895 519 - . . scaffold35180 GLEAN mRNA 904 21932 0.992496 - . ID=CGI_10001433; scaffold576 WUBlastX DNA_hAT 315437 316135 185 - . . scaffold576 GLEAN mRNA 315203 324696 0.999395 - . ID=CGI_10018773; scaffold57 WUBlastX DNA_En-Spm 3861 4088 68 + . . scaffold57 GLEAN mRNA 3208 18413 0.810616 + . ID=CGI_10020530; scaffold57 WUBlastX DNA_En-Spm 4291 4383 32 + . . scaffold57 GLEAN mRNA 3208 18413 0.810616 + . ID=CGI_10020530; scaffold1831 WUBlastX LTR_Gypsy 2702 2998 249 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold209 WUBlastX LTR_DIRS 252893 253183 34 + . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold1532 WUBlastX LTR_Gypsy 394034 394531 489 + . . scaffold1532 GLEAN mRNA 391874 403369 0.462643 + . ID=CGI_10028249; scaffold1717 WUBlastX DNA_hAT 106059 106310 106 - . . scaffold1717 GLEAN mRNA 96290 107438 1 - . ID=CGI_10013393; scaffold1717 WUBlastX DNA_hAT 107160 107438 122 - . . scaffold1717 GLEAN mRNA 96290 107438 1 - . ID=CGI_10013393; scaffold591 WUBlastX LTR_Ngaro 602730 603485 120 - . . scaffold591 GLEAN mRNA 577441 607957 0.997895 + . ID=CGI_10027576; scaffold41898 WUBlastX LTR_Gypsy 97951 98169 33 - . . scaffold41898 GLEAN mRNA 97771 99228 0.999846 - . ID=CGI_10005832; scaffold597 WUBlastX LINE_I 35928 36797 89 - . . scaffold597 GLEAN mRNA 30096 40610 0.999676 + . ID=CGI_10004927; scaffold597 WUBlastX LINE_I 37616 38485 89 - . . scaffold597 GLEAN mRNA 30096 40610 0.999676 + . ID=CGI_10004927; C34110 WUBlastX DNA_Kolobok-IS4 12603 12776 44 + . . C34110 GLEAN mRNA 2583 15463 0.431065 - . ID=CGI_10001212; scaffold1833 WUBlastX LINE_RTE-X 18040 18591 195 - . . scaffold1833 GLEAN mRNA 17986 18591 0.776794 - . ID=CGI_10007297; scaffold1833 WUBlastX LINE_RTE-X 18617 18675 195 - . . scaffold1833 GLEAN mRNA 18617 28551 1 - . ID=CGI_10007298; scaffold1831 WUBlastX LINE_RTE-BovB 1132 1374 135 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-BovB 1383 1502 75 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-BovB 1806 1886 42 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold39088 WUBlastX DNA_TcMar-Tc1 40571 40834 51 + . . scaffold39088 GLEAN mRNA 31554 48725 0.999086 - . ID=CGI_10003173; scaffold198 WUBlastX DNA_TcMar-Tc1 15573 16463 188 - . . scaffold198 GLEAN mRNA 4098 23255 0.65089 + . ID=CGI_10027787; scaffold42128 WUBlastX DNA_TcMar-Tc1 12002 12727 193 + . . scaffold42128 GLEAN mRNA 1970 15266 0.99078 + . ID=CGI_10006194; scaffold175 WUBlastX LINE_L1 244129 245274 450 + . . scaffold175 GLEAN mRNA 242942 249112 0.999907 + . ID=CGI_10021317; scaffold175 WUBlastX LINE_L1 245267 246748 836 + . . scaffold175 GLEAN mRNA 242942 249112 0.999907 + . ID=CGI_10021317; scaffold37430 WUBlastX LTR_Pao 40482 40640 123 - . . scaffold37430 GLEAN mRNA 25525 41907 0.539363 + . ID=CGI_10002358; scaffold1454 WUBlastX RC_Helitron 55871 56437 240 - . . scaffold1454 GLEAN mRNA 52591 59447 0.570116 - . ID=CGI_10004313; scaffold712 WUBlastX LINE_CR1 436818 437261 251 + . . scaffold712 GLEAN mRNA 407397 462275 0.613636 - . ID=CGI_10016489; scaffold619 WUBlastX LTR_Ngaro 484218 484787 81 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; C23316 WUBlastX LTR_Ngaro 929 1111 117 - . . C23316 GLEAN mRNA 644 1111 0.999999 - . ID=CGI_10000116; scaffold36598 WUBlastX LTR_Ngaro 27987 28955 157 - . . scaffold36598 GLEAN mRNA 27586 31293 0.99428 - . ID=CGI_10002013; scaffold1863 WUBlastX DNA_hAT-hATw 258930 260093 113 + . . scaffold1863 GLEAN mRNA 253566 292141 0.240564 - . ID=CGI_10016692; scaffold88 WUBlastX LINE_L1 23073 23507 32 - . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX LINE_L1 23073 23507 32 - . . scaffold88 GLEAN mRNA 22316 33699 0.444301 - . ID=CGI_10011115; scaffold689 WUBlastX LINE_RTE-X 168686 169219 66 + . . scaffold689 GLEAN mRNA 162763 181677 0.999 - . ID=CGI_10014826; scaffold42674 WUBlastX LINE_RTE-X 178767 178979 20 + . . scaffold42674 GLEAN mRNA 169493 180850 0.544647 + . ID=CGI_10007448; scaffold288 WUBlastX LINE_L1-Tx1 137358 137657 80 - . . scaffold288 GLEAN mRNA 119793 142586 0.674065 - . ID=CGI_10020658; scaffold1589 WUBlastX LTR_Gypsy 283592 285142 113 - . . scaffold1589 GLEAN mRNA 279757 287553 0.968345 - . ID=CGI_10024110; scaffold1094 WUBlastX DNA_hAT 661416 661610 171 - . . scaffold1094 GLEAN mRNA 660055 663729 1 - . ID=CGI_10021840; scaffold1094 WUBlastX DNA_hAT 661416 661610 171 - . . scaffold1094 GLEAN mRNA 653693 668891 0.999236 + . ID=CGI_10021839; scaffold1750 WUBlastX LTR_Pao 621779 622342 310 + . . scaffold1750 GLEAN mRNA 618365 630830 0.991783 + . ID=CGI_10021499; scaffold366 WUBlastX DNA_Harbinger 108543 109022 212 - . . scaffold366 GLEAN mRNA 106879 123133 0.490969 + . ID=CGI_10007776; scaffold42648 WUBlastX LTR_Pao 172099 172266 141 - . . scaffold42648 GLEAN mRNA 167771 174774 0.98388 - . ID=CGI_10007395; scaffold241 WUBlastX LTR_Pao 84611 84973 290 + . . scaffold241 GLEAN mRNA 81964 102317 0.534439 + . ID=CGI_10025091; scaffold198 WUBlastX LTR_Gypsy 798222 799097 59 + . . scaffold198 GLEAN mRNA 771982 806817 0.999999 + . ID=CGI_10027821; scaffold41684 WUBlastX LTR_Ngaro 43158 43505 143 + . . scaffold41684 GLEAN mRNA 27935 49740 0.93781 - . ID=CGI_10005434; scaffold489 WUBlastX DNA_Harbinger 112001 112126 124 - . . scaffold489 GLEAN mRNA 93550 113740 0.603671 - . ID=CGI_10020228; scaffold489 WUBlastX DNA_Harbinger 112688 113044 129 - . . scaffold489 GLEAN mRNA 93550 113740 0.603671 - . ID=CGI_10020228; C26936 WUBlastX LTR_Gypsy 2202 3359 178 - . . C26936 GLEAN mRNA 652 3529 1 - . ID=CGI_10000336; scaffold20 WUBlastX DNA_TcMar-Fot1 3972 4976 160 - . . scaffold20 GLEAN mRNA 478 8308 1 - . ID=CGI_10023555; scaffold1877 WUBlastX LINE_RTE-X 299290 299493 83 + . . scaffold1877 GLEAN mRNA 295978 306967 1 + . ID=CGI_10011963; scaffold583 WUBlastX LINE_L1-Tx1 437587 441390 1955 - . . scaffold583 GLEAN mRNA 412825 450410 0.995957 - . ID=CGI_10023625; scaffold1009 WUBlastX LTR_Ngaro 147324 148268 165 - . . scaffold1009 GLEAN mRNA 143472 160185 0.373363 + . ID=CGI_10028719; scaffold828 WUBlastX DNA_TcMar-Fot1 172390 172923 149 - . . scaffold828 GLEAN mRNA 167866 174886 0.999415 - . ID=CGI_10007370; scaffold1896 WUBlastX LTR_Ngaro 485971 486243 59 + . . scaffold1896 GLEAN mRNA 482993 491454 0.999947 + . ID=CGI_10019652; scaffold847 WUBlastX LINE_L1-Tx1 707407 707559 51 - . . scaffold847 GLEAN mRNA 701746 708200 0.916724 - . ID=CGI_10022288; scaffold975 WUBlastX LINE_RTE-BovB 129876 129941 26 + . . scaffold975 GLEAN mRNA 123992 132770 1 - . ID=CGI_10013325; scaffold975 WUBlastX LINE_RTE-BovB 130719 130889 32 + . . scaffold975 GLEAN mRNA 123992 132770 1 - . ID=CGI_10013325; scaffold57 WUBlastX LINE_RTE-X 209591 210064 280 - . . scaffold57 GLEAN mRNA 175786 215064 0.533671 + . ID=CGI_10020545; scaffold43818 WUBlastX LINE_RTE-X 329204 329668 187 + . . scaffold43818 GLEAN mRNA 325023 332374 0.596002 + . ID=CGI_10012778; scaffold209 WUBlastX LTR_DIRS 254266 254964 251 + . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold1866 WUBlastX LINE_CR1-L2 247420 247743 118 - . . scaffold1866 GLEAN mRNA 240570 251729 0.651094 - . ID=CGI_10017912; scaffold1104 WUBlastX LINE_RTE-BovB 164224 164289 24 + . . scaffold1104 GLEAN mRNA 162897 187197 0.499418 + . ID=CGI_10020361; scaffold406 WUBlastX LTR_Gypsy 133968 134033 21 + . . scaffold406 GLEAN mRNA 128241 151323 0.854188 - . ID=CGI_10023840; scaffold393 WUBlastX DNA_Harbinger 1056750 1057616 187 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold37532 WUBlastX LTR_Gypsy 41150 41680 336 + . . scaffold37532 GLEAN mRNA 24867 43092 0.82218 + . ID=CGI_10002401; scaffold368 WUBlastX DNA_IS4EU 88281 88631 59 + . . scaffold368 GLEAN mRNA 78208 92005 0.999415 - . ID=CGI_10018696; scaffold43146 WUBlastX DNA_IS4EU 104139 104378 84 - . . scaffold43146 GLEAN mRNA 80112 107835 0.644637 + . ID=CGI_10009042; scaffold43146 WUBlastX DNA_IS4EU 106834 107064 86 - . . scaffold43146 GLEAN mRNA 80112 107835 0.644637 + . ID=CGI_10009042; scaffold479 WUBlastX LTR_Ngaro 85972 86403 126 + . . scaffold479 GLEAN mRNA 82405 99723 0.898056 + . ID=CGI_10015682; scaffold290 WUBlastX LTR_Gypsy 552412 552690 238 + . . scaffold290 GLEAN mRNA 545890 556657 0.999676 + . ID=CGI_10018556; scaffold290 WUBlastX LTR_Gypsy 552735 552935 92 + . . scaffold290 GLEAN mRNA 545890 556657 0.999676 + . ID=CGI_10018556; scaffold485 WUBlastX DNA_IS4EU 830084 830266 55 - . . scaffold485 GLEAN mRNA 823477 836722 0.499894 - . ID=CGI_10024196; scaffold43008 WUBlastX DNA_Kolobok 56168 56299 25 - . . scaffold43008 GLEAN mRNA 53966 64440 0.597586 + . ID=CGI_10008461; scaffold1020 WUBlastX LINE_L2 197240 197890 280 - . . scaffold1020 GLEAN mRNA 186471 206717 0.999666 - . ID=CGI_10012855; scaffold433 WUBlastX DNA_Maverick 1261618 1262157 254 + . . scaffold433 GLEAN mRNA 1258038 1264095 0.626587 - . ID=CGI_10027122; scaffold1054 WUBlastX DNA_IS4EU 279053 279589 297 - . . scaffold1054 GLEAN mRNA 264440 285046 0.889923 + . ID=CGI_10012963; scaffold1054 WUBlastX DNA_IS4EU 279053 279589 297 - . . scaffold1054 GLEAN mRNA 274617 283441 0.999237 - . ID=CGI_10012964; scaffold143 WUBlastX LINE_L1 212235 212951 218 - . . scaffold143 GLEAN mRNA 211939 221171 0.564856 - . ID=CGI_10010016; C34256 WUBlastX DNA_Kolobok 10416 10697 151 + . . C34256 GLEAN mRNA 10416 11159 1 + . ID=CGI_10001258; scaffold780 WUBlastX LINE_RTE-BovB 368537 368989 352 + . . scaffold780 GLEAN mRNA 368378 381759 0.651026 - . ID=CGI_10024731; scaffold1838 WUBlastX LINE_L2 335834 336778 141 - . . scaffold1838 GLEAN mRNA 332958 349598 0.563165 + . ID=CGI_10014264; scaffold354 WUBlastX LINE_L2 489194 489385 45 - . . scaffold354 GLEAN mRNA 486223 493126 0.637462 - . ID=CGI_10025720; scaffold43170 WUBlastX LINE_RTE-BovB 29566 29808 113 + . . scaffold43170 GLEAN mRNA 562 49035 0.0513125 - . ID=CGI_10009100; scaffold522 WUBlastX LTR_Gypsy 556174 556293 70 - . . scaffold522 GLEAN mRNA 555460 561290 0.999999 + . ID=CGI_10020338; scaffold1066 WUBlastX LTR_Gypsy 169555 170643 365 + . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold38152 WUBlastX DNA_hAT-hATw 6752 9220 104 - . . scaffold38152 GLEAN mRNA 1846 12564 0.999993 - . ID=CGI_10002678; scaffold86 WUBlastX DNA_Academ 399545 399964 110 + . . scaffold86 GLEAN mRNA 398522 403007 0.217037 + . ID=CGI_10028152; scaffold36806 WUBlastX LTR_Ngaro 25022 25216 51 + . . scaffold36806 GLEAN mRNA 22975 34393 0.994851 + . ID=CGI_10002150; scaffold292 WUBlastX DNA_TcMar-Marin 37091 37468 140 + . . scaffold292 GLEAN mRNA 29262 46507 0.999144 + . ID=CGI_10003527; scaffold43446 WUBlastX LINE_CR1 163039 163227 55 + . . scaffold43446 GLEAN mRNA 154155 168433 0.907649 - . ID=CGI_10010403; scaffold1708 WUBlastX LINE_CR1-L2 6969 8450 258 - . . scaffold1708 GLEAN mRNA 6391 9576 0.777526 + . ID=CGI_10005574; scaffold425 WUBlastX DNA_Kolobok 143448 143831 74 - . . scaffold425 GLEAN mRNA 143014 144448 0.999415 - . ID=CGI_10025979; scaffold1772 WUBlastX LTR_DIRS 202107 202256 59 - . . scaffold1772 GLEAN mRNA 201858 204314 0.999554 - . ID=CGI_10014812; scaffold43446 WUBlastX LINE_CR1 163235 163330 48 + . . scaffold43446 GLEAN mRNA 154155 168433 0.907649 - . ID=CGI_10010403; scaffold1210 WUBlastX DNA_Academ 242968 242981 329 - . . scaffold1210 GLEAN mRNA 242968 243372 0.866433 - . ID=CGI_10014607; scaffold370 WUBlastX DNA_hAT-hATw 844867 845955 185 + . . scaffold370 GLEAN mRNA 838405 846799 0.855201 + . ID=CGI_10025566; scaffold1429 WUBlastX DNA_IS4EU 15775 16470 329 + . . scaffold1429 GLEAN mRNA 13458 17611 0.727726 + . ID=CGI_10001355; scaffold41242 WUBlastX LINE_L1-Tx1 101123 101347 114 + . . scaffold41242 GLEAN mRNA 97496 109439 0.170639 - . ID=CGI_10004889; scaffold215 WUBlastX LINE_RTE-BovB 156390 156479 87 - . . scaffold215 GLEAN mRNA 149757 156902 0.354656 - . ID=CGI_10006647; scaffold1484 WUBlastX LTR_Ngaro 106684 107058 161 - . . scaffold1484 GLEAN mRNA 103851 118273 0.818682 - . ID=CGI_10013260; scaffold1858 WUBlastX LINE_L1-Tx1 120862 121695 123 - . . scaffold1858 GLEAN mRNA 114362 126826 0.999351 - . ID=CGI_10010447; scaffold1858 WUBlastX LINE_L1-Tx1 121700 121972 86 - . . scaffold1858 GLEAN mRNA 114362 126826 0.999351 - . ID=CGI_10010447; scaffold1858 WUBlastX LINE_L1-Tx1 121944 122102 111 - . . scaffold1858 GLEAN mRNA 114362 126826 0.999351 - . ID=CGI_10010447; scaffold853 WUBlastX LINE_L2 430815 431597 23 - . . scaffold853 GLEAN mRNA 427674 436320 0.99996 - . ID=CGI_10017516; scaffold535 WUBlastX LTR_Gypsy 557243 558085 403 + . . scaffold535 GLEAN mRNA 556071 562996 0.477113 + . ID=CGI_10020299; scaffold191 WUBlastX LINE_RTE-X 554405 554479 20 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX LINE_RTE-X 555050 555262 123 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX LINE_RTE-X 553967 554314 56 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX LINE_RTE-X 554529 554972 232 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold601 WUBlastX LINE_L2 1229484 1229582 22 + . . scaffold601 GLEAN mRNA 1228306 1237789 1 - . ID=CGI_10026862; scaffold1448 WUBlastX LTR_Pao 220879 220986 28 + . . scaffold1448 GLEAN mRNA 205659 222787 0.97529 + . ID=CGI_10011856; scaffold213 WUBlastX DNA_TcMar-Tc1 175921 176052 80 - . . scaffold213 GLEAN mRNA 155081 183799 0.877289 - . ID=CGI_10007552; scaffold213 WUBlastX DNA_TcMar-Tc1 176097 176726 222 - . . scaffold213 GLEAN mRNA 155081 183799 0.877289 - . ID=CGI_10007552; scaffold1052 WUBlastX LINE_RTE-X 75979 77055 367 - . . scaffold1052 GLEAN mRNA 59893 79725 0.988141 - . ID=CGI_10005470; scaffold1204 WUBlastX LTR_Pao 37639 37728 23 + . . scaffold1204 GLEAN mRNA 17672 38672 0.500149 - . ID=CGI_10009804; scaffold42364 WUBlastX LINE_CR1-L2 76019 76240 106 - . . scaffold42364 GLEAN mRNA 72172 88504 0.999923 + . ID=CGI_10006723; scaffold209 WUBlastX LTR_Pao 251350 251964 516 + . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold1377 WUBlastX LTR_Gypsy 150089 150118 24 + . . scaffold1377 GLEAN mRNA 119143 150442 0.64366 + . ID=CGI_10008621; scaffold236 WUBlastX DNA_Kolobok 230894 231106 77 + . . scaffold236 GLEAN mRNA 229568 231611 1 + . ID=CGI_10018139; scaffold1525 WUBlastX LINE_L1-Tx1 40701 41153 128 + . . scaffold1525 GLEAN mRNA 22768 58796 0.21079 + . ID=CGI_10013853; scaffold1301 WUBlastX DNA_TcMar-Pogo 958126 959520 528 + . . scaffold1301 GLEAN mRNA 940827 961246 0.536299 + . ID=CGI_10027751; scaffold1171 WUBlastX LINE_L1-Tx1 16286 16510 23 + . . scaffold1171 GLEAN mRNA 12089 17698 0.989581 + . ID=CGI_10002857; scaffold33082 WUBlastX LINE_RTE-X 6330 6572 130 - . . scaffold33082 GLEAN mRNA 1046 12947 0.584166 + . ID=CGI_10000988; scaffold1634 WUBlastX LTR_Ngaro 83782 84510 526 - . . scaffold1634 GLEAN mRNA 82464 85496 0.992943 + . ID=CGI_10005152; scaffold223 WUBlastX LTR_Gypsy 5149 5856 458 - . . scaffold223 GLEAN mRNA 942 7795 0.487602 - . ID=CGI_10012904; scaffold224 WUBlastX DNA_TcMar-Tc1 53274 53648 211 - . . scaffold224 GLEAN mRNA 41298 72438 0.99912 - . ID=CGI_10003616; scaffold425 WUBlastX DNA_IS4EU 134962 135528 253 + . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold425 WUBlastX DNA_IS4EU 136697 137377 233 + . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold804 WUBlastX LTR_Gypsy 169414 170139 90 - . . scaffold804 GLEAN mRNA 160406 170673 0.986312 - . ID=CGI_10014856; scaffold517 WUBlastX LINE_L1-Tx1 199771 200259 174 - . . scaffold517 GLEAN mRNA 188444 202746 0.541804 + . ID=CGI_10008984; scaffold517 WUBlastX LINE_L1-Tx1 200306 200857 349 - . . scaffold517 GLEAN mRNA 188444 202746 0.541804 + . ID=CGI_10008984; scaffold1754 WUBlastX LINE_L1-Tx1 128611 129000 220 + . . scaffold1754 GLEAN mRNA 124608 131066 0.788238 + . ID=CGI_10009580; scaffold1754 WUBlastX LINE_L1-Tx1 128991 129488 99 + . . scaffold1754 GLEAN mRNA 124608 131066 0.788238 + . ID=CGI_10009580; scaffold1754 WUBlastX LINE_L1-Tx1 129491 130315 49 + . . scaffold1754 GLEAN mRNA 124608 131066 0.788238 + . ID=CGI_10009580; scaffold42364 WUBlastX LINE_L2 74842 76011 277 - . . scaffold42364 GLEAN mRNA 72172 88504 0.999923 + . ID=CGI_10006723; scaffold42364 WUBlastX LINE_L2 76007 76186 110 - . . scaffold42364 GLEAN mRNA 72172 88504 0.999923 + . ID=CGI_10006723; scaffold1262 WUBlastX DNA_Kolobok-IS4 515085 515174 39 - . . scaffold1262 GLEAN mRNA 503446 523698 0.999351 - . ID=CGI_10018956; scaffold1262 WUBlastX DNA_Kolobok-IS4 515844 515981 40 - . . scaffold1262 GLEAN mRNA 503446 523698 0.999351 - . ID=CGI_10018956; scaffold1347 WUBlastX DNA_Maverick 325152 325892 458 + . . scaffold1347 GLEAN mRNA 315464 333991 0.924019 + . ID=CGI_10012984; scaffold31388 WUBlastX DNA_Zator 5151 5375 29 - . . scaffold31388 GLEAN mRNA 4345 8298 0.644139 - . ID=CGI_10000740; scaffold1101 WUBlastX LINE_RTE-X 526937 527332 234 - . . scaffold1101 GLEAN mRNA 521845 536003 0.859729 + . ID=CGI_10023031; scaffold211 WUBlastX LINE_CR1-L2 971522 971854 50 + . . scaffold211 GLEAN mRNA 954777 972416 0.999996 - . ID=CGI_10026971; scaffold632 WUBlastX LINE_L1-Tx1 483426 483692 181 + . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold165 WUBlastX LTR_Gypsy 114298 114342 20 + . . scaffold165 GLEAN mRNA 100697 128503 0.998921 + . ID=CGI_10015315; scaffold603 WUBlastX LINE_L1 18167 18421 101 - . . scaffold603 GLEAN mRNA 13948 26603 0.533291 - . ID=CGI_10009894; scaffold925 WUBlastX DNA_Sola 282772 282957 76 + . . scaffold925 GLEAN mRNA 265784 299058 0.996279 - . ID=CGI_10017423; scaffold57 WUBlastX DNA_hAT 297789 298679 436 + . . scaffold57 GLEAN mRNA 297762 301894 1 + . ID=CGI_10020550; scaffold57 WUBlastX DNA_hAT 299319 299462 90 + . . scaffold57 GLEAN mRNA 297762 301894 1 + . ID=CGI_10020550; scaffold57 WUBlastX DNA_hAT 299872 300048 103 + . . scaffold57 GLEAN mRNA 297762 301894 1 + . ID=CGI_10020550; scaffold563 WUBlastX LINE_L1-Tx1 509282 511066 408 + . . scaffold563 GLEAN mRNA 469996 513756 0.653133 + . ID=CGI_10019843; scaffold43538 WUBlastX LTR_Gypsy-Cigr 10608 11027 66 + . . scaffold43538 GLEAN mRNA 10395 14337 0.902653 + . ID=CGI_10010812; scaffold162 WUBlastX LINE_RTE-X 54512 55393 397 + . . scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; scaffold1322 WUBlastX LINE_RTE-X 368622 368834 26 - . . scaffold1322 GLEAN mRNA 366517 374727 0.833191 + . ID=CGI_10019476; scaffold853 WUBlastX LTR_Gypsy 451931 452119 33 - . . scaffold853 GLEAN mRNA 448693 455013 0.999949 - . ID=CGI_10017517; scaffold853 WUBlastX LTR_Gypsy 452415 453395 478 - . . scaffold853 GLEAN mRNA 448693 455013 0.999949 - . ID=CGI_10017517; scaffold1703 WUBlastX DNA_PiggyBac 90919 91095 84 + . . scaffold1703 GLEAN mRNA 88691 94932 1 + . ID=CGI_10023040; scaffold1703 WUBlastX DNA_PiggyBac 92389 93513 516 + . . scaffold1703 GLEAN mRNA 88691 94932 1 + . ID=CGI_10023040; scaffold267 WUBlastX DNA_TcMar-Tc1 367315 368316 598 + . . scaffold267 GLEAN mRNA 365338 373963 1 + . ID=CGI_10018307; scaffold61 WUBlastX DNA_Academ 164918 165574 152 - . . scaffold61 GLEAN mRNA 164819 186758 0.205101 - . ID=CGI_10016346; scaffold1281 WUBlastX LTR_DIRS 8724 9113 195 + . . scaffold1281 GLEAN mRNA 6818 22494 0.72874 + . ID=CGI_10001420; scaffold219 WUBlastX LINE_L1-Tx1 129332 129646 161 + . . scaffold219 GLEAN mRNA 124764 139591 0.613723 - . ID=CGI_10016614; scaffold219 WUBlastX LINE_L1-Tx1 130093 131172 310 + . . scaffold219 GLEAN mRNA 124764 139591 0.613723 - . ID=CGI_10016614; scaffold219 WUBlastX LINE_L1-Tx1 132108 132377 119 + . . scaffold219 GLEAN mRNA 124764 139591 0.613723 - . ID=CGI_10016614; scaffold219 WUBlastX LINE_L1-Tx1 132440 132853 30 + . . scaffold219 GLEAN mRNA 124764 139591 0.613723 - . ID=CGI_10016614; scaffold406 WUBlastX LTR_Gypsy 135876 136718 266 + . . scaffold406 GLEAN mRNA 128241 151323 0.854188 - . ID=CGI_10023840; scaffold41954 WUBlastX LINE_RTE-X 130243 130335 34 - . . scaffold41954 GLEAN mRNA 128673 136852 1 + . ID=CGI_10005855; scaffold499 WUBlastX LTR_DIRS 251259 251483 48 + . . scaffold499 GLEAN mRNA 249813 257188 0.581333 - . ID=CGI_10015767; scaffold1132 WUBlastX LINE_RTE-X 424897 426141 601 + . . scaffold1132 GLEAN mRNA 413110 426704 0.743295 - . ID=CGI_10023318; scaffold1652 WUBlastX RC_Helitron 230380 231489 87 - . . scaffold1652 GLEAN mRNA 224467 242523 0.999676 - . ID=CGI_10012393; scaffold43396 WUBlastX LTR_Ngaro 236876 237421 334 - . . scaffold43396 GLEAN mRNA 229822 241717 0.993815 + . ID=CGI_10010156; scaffold321 WUBlastX LTR_Gypsy 479566 480216 176 + . . scaffold321 GLEAN mRNA 474717 485753 0.439448 - . ID=CGI_10020812; scaffold323 WUBlastX RC_Helitron 51780 52943 725 + . . scaffold323 GLEAN mRNA 43017 58412 0.999949 + . ID=CGI_10009773; scaffold323 WUBlastX RC_Helitron 52946 53500 167 + . . scaffold323 GLEAN mRNA 43017 58412 0.999949 + . ID=CGI_10009773; scaffold315 WUBlastX DNA_Harbinger 428180 428236 24 + . . scaffold315 GLEAN mRNA 427034 448129 0.999057 + . ID=CGI_10020426; scaffold534 WUBlastX LTR_Gypsy 71444 72352 114 - . . scaffold534 GLEAN mRNA 66095 75550 0.716363 + . ID=CGI_10005164; scaffold43954 WUBlastX LINE_CR1 146684 146941 36 + . . scaffold43954 GLEAN mRNA 139153 149832 0.999998 - . ID=CGI_10014576; scaffold38458 WUBlastX LINE_CR1-L2 56099 56269 51 + . . scaffold38458 GLEAN mRNA 56051 56269 0.999372 + . ID=CGI_10002785; scaffold40440 WUBlastX LTR_Gypsy 33215 34165 83 - . . scaffold40440 GLEAN mRNA 16484 36402 0.811713 + . ID=CGI_10004142; scaffold479 WUBlastX LTR_Ngaro 83740 84354 61 + . . scaffold479 GLEAN mRNA 82405 99723 0.898056 + . ID=CGI_10015682; scaffold408 WUBlastX LTR_DIRS 564387 564455 20 - . . scaffold408 GLEAN mRNA 551872 569972 0.499918 - . ID=CGI_10023249; scaffold707 WUBlastX DNA_Harbinger 43628 43801 52 + . . scaffold707 GLEAN mRNA 28186 50322 0.998251 + . ID=CGI_10007721; scaffold1213 WUBlastX DNA_hAT-Tip100 358434 358847 52 + . . scaffold1213 GLEAN mRNA 350181 406483 0.805895 + . ID=CGI_10027449; scaffold1143 WUBlastX DNA_IS4EU 123287 123934 71 - . . scaffold1143 GLEAN mRNA 121955 124624 0.796524 - . ID=CGI_10009141; scaffold1199 WUBlastX DNA_IS4EU 106604 107008 62 + . . scaffold1199 GLEAN mRNA 106273 107830 0.490912 + . ID=CGI_10005927; scaffold535 WUBlastX DNA_TcMar-Tc1 116865 117125 50 + . . scaffold535 GLEAN mRNA 111373 154699 0.592399 + . ID=CGI_10020283; scaffold772 WUBlastX LINE_Penelope 53544 53774 52 - . . scaffold772 GLEAN mRNA 32739 66911 0.999897 - . ID=CGI_10016575; scaffold40068 WUBlastX DNA_TcMar-Tc1 49753 50046 66 - . . scaffold40068 GLEAN mRNA 33497 57280 0.493966 - . ID=CGI_10003835; scaffold1863 WUBlastX DNA_TcMar-Marin 71033 71149 46 + . . scaffold1863 GLEAN mRNA 64523 72904 0.332642 - . ID=CGI_10016679; scaffold36698 WUBlastX DNA_TcMar-Marin 2417 2635 36 - . . scaffold36698 GLEAN mRNA 1616 6984 0.999949 - . ID=CGI_10002014; scaffold90 WUBlastX DNA_TcMar-Marin 384849 385052 87 + . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold1760 WUBlastX LINE_L1-Tx1 35617 35811 81 + . . scaffold1760 GLEAN mRNA 10471 43998 0.994763 + . ID=CGI_10002757; scaffold194 WUBlastX LINE_Penelope 92658 93170 45 + . . scaffold194 GLEAN mRNA 88923 103343 0.864939 + . ID=CGI_10011059; scaffold1231 WUBlastX LINE_RTE-BovB 105744 105995 65 + . . scaffold1231 GLEAN mRNA 79934 107425 0.93438 + . ID=CGI_10004703; scaffold168 WUBlastX LINE_RTE-X 20667 20744 24 - . . scaffold168 GLEAN mRNA 17788 42641 0.990039 - . ID=CGI_10025582; scaffold1574 WUBlastX LINE_RTE-X 112677 113012 68 - . . scaffold1574 GLEAN mRNA 112677 113012 0.965913 - . ID=CGI_10016322; scaffold1711 WUBlastX LINE_RTE-X 23210 23452 55 + . . scaffold1711 GLEAN mRNA 19250 25931 0.598612 + . ID=CGI_10015595; scaffold461 WUBlastX LINE_RTE-X 506029 506211 58 + . . scaffold461 GLEAN mRNA 502998 509730 0.979735 + . ID=CGI_10020117; scaffold43008 WUBlastX DNA_Sola 50828 51052 52 - . . scaffold43008 GLEAN mRNA 50609 51714 0.543138 - . ID=CGI_10008460; scaffold43008 WUBlastX DNA_Sola 51598 51714 39 - . . scaffold43008 GLEAN mRNA 50609 51714 0.543138 - . ID=CGI_10008460; scaffold1623 WUBlastX DNA_Sola 12520 12774 52 - . . scaffold1623 GLEAN mRNA 2672 21645 0.211469 + . ID=CGI_10002853; scaffold1623 WUBlastX DNA_Sola 13035 13094 20 - . . scaffold1623 GLEAN mRNA 2672 21645 0.211469 + . ID=CGI_10002853; scaffold1189 WUBlastX DNA_Zator 37489 37869 52 - . . scaffold1189 GLEAN mRNA 28380 51228 1 + . ID=CGI_10023793; scaffold43664 WUBlastX LINE_L1-Tx1 213728 213916 36 + . . scaffold43664 GLEAN mRNA 204407 215793 0.656307 - . ID=CGI_10011717; scaffold1599 WUBlastX LINE_CR1-L2 680040 680354 56 + . . scaffold1599 GLEAN mRNA 676136 688286 0.501311 - . ID=CGI_10027155; scaffold40928 WUBlastX LINE_LOA 39700 39825 25 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold1403 WUBlastX LTR_Pao 571614 571871 29 - . . scaffold1403 GLEAN mRNA 570715 576701 0.734339 - . ID=CGI_10020184; scaffold499 WUBlastX LTR_DIRS 253142 253309 81 + . . scaffold499 GLEAN mRNA 249813 257188 0.581333 - . ID=CGI_10015767; scaffold41766 WUBlastX LTR_Gypsy 32206 32490 69 - . . scaffold41766 GLEAN mRNA 24624 37050 0.752559 - . ID=CGI_10005601; scaffold1831 WUBlastX LINE_I 33444 33857 53 + . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_I 33444 33857 53 + . . scaffold1831 GLEAN mRNA 30321 42527 0.595655 - . ID=CGI_10002913; scaffold1000 WUBlastX DNA_hAT-Ac 256790 256885 31 + . . scaffold1000 GLEAN mRNA 254688 266328 0.650465 + . ID=CGI_10013084; scaffold142 WUBlastX DNA_Harbinger 1218970 1219668 33 - . . scaffold142 GLEAN mRNA 1216819 1221683 0.999676 + . ID=CGI_10026797; scaffold286 WUBlastX DNA_Harbinger 444857 445021 66 - . . scaffold286 GLEAN mRNA 433158 447481 0.525246 + . ID=CGI_10015974; scaffold90 WUBlastX DNA_Harbinger 258151 258219 26 - . . scaffold90 GLEAN mRNA 256704 258219 0.982419 + . ID=CGI_10015169; scaffold448 WUBlastX DNA_Kolobok-Hyd 213388 213768 25 + . . scaffold448 GLEAN mRNA 213388 215689 0.999613 + . ID=CGI_10024936; scaffold583 WUBlastX LINE_L1 441936 442538 45 - . . scaffold583 GLEAN mRNA 412825 450410 0.995957 - . ID=CGI_10023625; scaffold664 WUBlastX DNA_TcMar-Marin 655994 656299 43 - . . scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold43258 WUBlastX DNA_TcMar-Marin 93144 93227 28 - . . scaffold43258 GLEAN mRNA 90747 124672 0.523441 + . ID=CGI_10009633; scaffold563 WUBlastX DNA_TcMar-Marin 505524 505829 65 - . . scaffold563 GLEAN mRNA 469996 513756 0.653133 + . ID=CGI_10019843; scaffold1447 WUBlastX LINE_Penelope 48875 49267 64 - . . scaffold1447 GLEAN mRNA 11511 50547 0.469757 + . ID=CGI_10013812; scaffold36 WUBlastX DNA_NOF 7095 7286 47 + . . scaffold36 GLEAN mRNA 2519 8438 0.614104 + . ID=CGI_10001028; scaffold290 WUBlastX LINE_RTE-X 185117 185272 63 + . . scaffold290 GLEAN mRNA 184166 208505 0.688957 - . ID=CGI_10018539; scaffold1316 WUBlastX LTR_ERV1 260650 260856 66 + . . scaffold1316 GLEAN mRNA 259603 261597 0.995793 + . ID=CGI_10016306; scaffold41598 WUBlastX DNA_PiggyBac 74305 74463 52 - . . scaffold41598 GLEAN mRNA 59426 74794 0.449575 - . ID=CGI_10005304; scaffold41210 WUBlastX LINE_RTE-X 4960 5112 31 - . . scaffold41210 GLEAN mRNA 409 13857 0.999993 + . ID=CGI_10004798; scaffold40246 WUBlastX DNA_hAT-Tip100 26956 27045 81 - . . scaffold40246 GLEAN mRNA 25998 27045 0.997233 - . ID=CGI_10003986; scaffold1873 WUBlastX LINE_L1-Tx1 72815 73003 58 - . . scaffold1873 GLEAN mRNA 66556 75534 0.967714 + . ID=CGI_10009292; scaffold1455 WUBlastX LTR_Gypsy 57372 58085 83 - . . scaffold1455 GLEAN mRNA 56849 64611 0.522943 - . ID=CGI_10003301; scaffold719 WUBlastX LTR_Pao 352022 352177 115 + . . scaffold719 GLEAN mRNA 352016 396683 0.96406 + . ID=CGI_10016008; scaffold1423 WUBlastX DNA_hAT 195744 195989 96 - . . scaffold1423 GLEAN mRNA 194970 198353 1 - . ID=CGI_10025421; scaffold501 WUBlastX LINE_CR1-L2 1211117 1211278 45 + . . scaffold501 GLEAN mRNA 1202814 1224035 0.789617 + . ID=CGI_10027546; scaffold192 WUBlastX LTR_Gypsy-Gmr1 665462 665560 50 + . . scaffold192 GLEAN mRNA 655198 676504 0.999922 - . ID=CGI_10023723; scaffold1241 WUBlastX LTR_DIRS 44709 44771 27 + . . scaffold1241 GLEAN mRNA 33172 55862 0.858231 - . ID=CGI_10016418; scaffold885 WUBlastX LTR_DIRS 1017265 1017687 44 + . . scaffold885 GLEAN mRNA 1005329 1048267 0.991835 - . ID=CGI_10025234; scaffold316 WUBlastX LTR_Gypsy 16635 16787 67 + . . scaffold316 GLEAN mRNA 23 25141 0.301379 - . ID=CGI_10001602; scaffold1036 WUBlastX DNA_IS4EU 71238 71411 82 + . . scaffold1036 GLEAN mRNA 62334 73775 0.755696 - . ID=CGI_10019943; scaffold20 WUBlastX DNA_MuDR 31413 31640 73 + . . scaffold20 GLEAN mRNA 25974 32204 0.614933 - . ID=CGI_10023556; scaffold20 WUBlastX DNA_MuDR 31413 31640 73 + . . scaffold20 GLEAN mRNA 28495 32289 0.880534 + . ID=CGI_10023557; scaffold149 WUBlastX LINE_Penelope 977738 977905 39 + . . scaffold149 GLEAN mRNA 977738 985587 0.998126 + . ID=CGI_10025334; scaffold41816 WUBlastX LTR_Ngaro 25040 25270 65 - . . scaffold41816 GLEAN mRNA 6032 28025 0.728522 - . ID=CGI_10005647; scaffold38780 WUBlastX DNA_Kolobok 21925 22074 79 + . . scaffold38780 GLEAN mRNA 21652 22077 0.999988 + . ID=CGI_10002960; scaffold53 WUBlastX LINE_L1-Tx1 547883 547993 49 - . . scaffold53 GLEAN mRNA 545001 589869 0.567528 + . ID=CGI_10026671; scaffold42880 WUBlastX LINE_RTE-BovB 185430 185675 99 + . . scaffold42880 GLEAN mRNA 184633 197786 1 - . ID=CGI_10007998; scaffold363 WUBlastX LINE_RTE-BovB 244945 245235 76 + . . scaffold363 GLEAN mRNA 238043 248043 0.648316 - . ID=CGI_10019299; scaffold31538 WUBlastX DNA_Maverick 4042 4695 31 - . . scaffold31538 GLEAN mRNA 4012 9466 0.997845 - . ID=CGI_10000765; scaffold365 WUBlastX LINE_RTE-X 186591 187103 57 - . . scaffold365 GLEAN mRNA 162342 187868 0.996603 - . ID=CGI_10022722; scaffold1028 WUBlastX LINE_RTE-X 42524 42757 54 + . . scaffold1028 GLEAN mRNA 38359 105235 0.597726 - . ID=CGI_10009718; scaffold313 WUBlastX LINE_RTE-X 134319 134482 93 + . . scaffold313 GLEAN mRNA 134319 135998 0.83601 - . ID=CGI_10026584; scaffold1024 WUBlastX DNA_TcMar-Tc1 1080104 1080166 41 - . . scaffold1024 GLEAN mRNA 1078261 1083838 0.826098 - . ID=CGI_10028565; scaffold751 WUBlastX LINE_L2 411577 411807 75 + . . scaffold751 GLEAN mRNA 408046 415763 1 - . ID=CGI_10017403; scaffold44064 WUBlastX LINE_CR1 214863 215270 73 + . . scaffold44064 GLEAN mRNA 201756 215782 0.297034 - . ID=CGI_10016763; scaffold70 WUBlastX DNA_hAT 923131 923715 84 + . . scaffold70 GLEAN mRNA 923086 924045 0.955608 + . ID=CGI_10024803; scaffold1896 WUBlastX LTR_Ngaro 485843 486064 68 + . . scaffold1896 GLEAN mRNA 482993 491454 0.999947 + . ID=CGI_10019652; scaffold1719 WUBlastX LTR_Gypsy 189838 190485 92 + . . scaffold1719 GLEAN mRNA 177172 199114 0.99732 - . ID=CGI_10014281; scaffold226 WUBlastX LTR_Gypsy 659796 659972 42 - . . scaffold226 GLEAN mRNA 638426 687523 0.559216 + . ID=CGI_10025370; scaffold126 WUBlastX LTR_Gypsy 271185 271526 100 + . . scaffold126 GLEAN mRNA 265266 272636 0.813518 - . ID=CGI_10019191; scaffold1307 WUBlastX DNA_hAT-Blackja 634173 634424 66 - . . scaffold1307 GLEAN mRNA 625481 640911 0.991393 - . ID=CGI_10023775; scaffold393 WUBlastX DNA_hAT-Blackja 1191618 1191890 71 + . . scaffold393 GLEAN mRNA 1189298 1195298 0.588681 - . ID=CGI_10026931; scaffold42030 WUBlastX LTR_Gypsy 14680 14823 26 + . . scaffold42030 GLEAN mRNA 13387 15078 0.965896 + . ID=CGI_10006041; scaffold149 WUBlastX DNA_TcMar-Marin 1037253 1037450 48 - . . scaffold149 GLEAN mRNA 1029286 1055668 0.813477 - . ID=CGI_10025339; scaffold149 WUBlastX DNA_TcMar-Marin 1037802 1038020 42 - . . scaffold149 GLEAN mRNA 1029286 1055668 0.813477 - . ID=CGI_10025339; scaffold1259 WUBlastX DNA_MuDR 15516 15707 44 - . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold1715 WUBlastX LINE_RTE-X 337939 338250 53 - . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold43676 WUBlastX LINE_RTE-X 73259 73363 29 + . . scaffold43676 GLEAN mRNA 61551 77121 0.553897 - . ID=CGI_10011729; scaffold43676 WUBlastX LINE_RTE-X 73375 73485 46 + . . scaffold43676 GLEAN mRNA 61551 77121 0.553897 - . ID=CGI_10011729; scaffold963 WUBlastX LINE_RTE-BovB 101409 101735 79 - . . scaffold963 GLEAN mRNA 91677 101893 1 + . ID=CGI_10015619; scaffold1186 WUBlastX LINE_RTE-X 70821 70979 25 + . . scaffold1186 GLEAN mRNA 62909 95132 0.584728 + . ID=CGI_10010593; scaffold1186 WUBlastX LINE_RTE-X 71752 71904 40 + . . scaffold1186 GLEAN mRNA 62909 95132 0.584728 + . ID=CGI_10010593; scaffold39758 WUBlastX LINE_RTE-BovB 59680 60216 89 - . . scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold1449 WUBlastX DNA_TcMar-Tc1 51700 51921 97 - . . scaffold1449 GLEAN mRNA 47527 52497 0.806919 - . ID=CGI_10010690; scaffold1476 WUBlastX LINE_L2 171850 171954 32 + . . scaffold1476 GLEAN mRNA 169615 179488 0.862141 + . ID=CGI_10009826; scaffold504 WUBlastX LTR_Gypsy 6656 7234 86 + . . scaffold504 GLEAN mRNA 4327 7355 1 - . ID=CGI_10016012; scaffold38292 WUBlastX LTR_Gypsy 46431 47681 118 + . . scaffold38292 GLEAN mRNA 45996 48404 0.696819 + . ID=CGI_10002692; scaffold1188 WUBlastX LTR_Gypsy 207571 208014 83 - . . scaffold1188 GLEAN mRNA 201691 209926 0.974251 - . ID=CGI_10025462; scaffold524 WUBlastX DNA_Crypton 75683 75988 74 + . . scaffold524 GLEAN mRNA 75461 100375 0.53498 - . ID=CGI_10016598; scaffold1673 WUBlastX LTR_Gypsy 52988 53125 131 - . . scaffold1673 GLEAN mRNA 51832 54257 0.720264 - . ID=CGI_10013570; scaffold1362 WUBlastX RC_Helitron 501669 502067 51 - . . scaffold1362 GLEAN mRNA 501660 502067 1 - . ID=CGI_10023944; scaffold471 WUBlastX DNA_MuDR 1229012 1229992 43 - . . scaffold471 GLEAN mRNA 1226022 1238861 0.423333 - . ID=CGI_10027038; scaffold1125 WUBlastX LINE_Penelope 296665 297336 21 - . . scaffold1125 GLEAN mRNA 258264 306646 0.367081 + . ID=CGI_10012342; scaffold1272 WUBlastX LINE_Penelope 90154 90681 61 + . . scaffold1272 GLEAN mRNA 69936 97048 0.861711 + . ID=CGI_10008307; scaffold1164 WUBlastX LINE_L1 309294 309713 56 - . . scaffold1164 GLEAN mRNA 307222 312085 0.957199 - . ID=CGI_10013011; scaffold625 WUBlastX LINE_L1-Tx1 669060 669629 48 - . . scaffold625 GLEAN mRNA 660953 675922 0.820405 - . ID=CGI_10023430; scaffold1163 WUBlastX LINE_RTE-BovB 200485 200787 21 + . . scaffold1163 GLEAN mRNA 183718 207332 0.990122 - . ID=CGI_10009351; scaffold1101 WUBlastX LINE_RTE-X 527647 528003 89 - . . scaffold1101 GLEAN mRNA 521845 536003 0.859729 + . ID=CGI_10023031; scaffold1241 WUBlastX LINE_RTE-X 260250 260366 29 + . . scaffold1241 GLEAN mRNA 230364 272061 0.65035 - . ID=CGI_10016431; scaffold1241 WUBlastX LINE_RTE-X 260390 260518 50 + . . scaffold1241 GLEAN mRNA 230364 272061 0.65035 - . ID=CGI_10016431; scaffold1698 WUBlastX DNA_Sola 509319 509702 47 + . . scaffold1698 GLEAN mRNA 503808 514720 0.638313 + . ID=CGI_10019389; scaffold1698 WUBlastX DNA_Sola 510429 510563 30 + . . scaffold1698 GLEAN mRNA 503808 514720 0.638313 + . ID=CGI_10019389; scaffold39120 WUBlastX LTR_Ngaro 46310 46471 41 - . . scaffold39120 GLEAN mRNA 36514 50111 0.858496 + . ID=CGI_10003188; scaffold867 WUBlastX LINE_L2 496229 496804 100 + . . scaffold867 GLEAN mRNA 490506 500925 0.812964 - . ID=CGI_10026232; scaffold432 WUBlastX DNA_Crypton 732447 732950 85 - . . scaffold432 GLEAN mRNA 728697 733393 0.995435 - . ID=CGI_10023120; scaffold42836 WUBlastX LTR_Gypsy 114514 114642 31 + . . scaffold42836 GLEAN mRNA 101715 122664 0.986039 + . ID=CGI_10007860; scaffold43076 WUBlastX DNA_Kolobok-IS4 68281 68505 55 - . . scaffold43076 GLEAN mRNA 66506 68912 0.997439 + . ID=CGI_10008761; scaffold43076 WUBlastX DNA_Kolobok-IS4 68702 68912 38 - . . scaffold43076 GLEAN mRNA 66506 68912 0.997439 + . ID=CGI_10008761; scaffold88 WUBlastX DNA_hAT-Tip100 5680 5856 58 + . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold38272 WUBlastX LINE_L1 51317 51619 53 + . . scaffold38272 GLEAN mRNA 12040 52169 0.605388 + . ID=CGI_10002702; scaffold43686 WUBlastX LINE_L1 24193 24480 119 - . . scaffold43686 GLEAN mRNA 15165 50110 0.498897 + . ID=CGI_10011753; scaffold39088 WUBlastX DNA_TcMar-Tc1 41250 41582 57 + . . scaffold39088 GLEAN mRNA 31554 48725 0.999086 - . ID=CGI_10003173; scaffold38750 WUBlastX LINE_RTE-X 16879 17373 21 + . . scaffold38750 GLEAN mRNA 15091 19690 0.999995 + . ID=CGI_10002957; scaffold1794 WUBlastX LINE_RTE-X 27880 28140 80 - . . scaffold1794 GLEAN mRNA 20538 42560 0.51959 + . ID=CGI_10019565; scaffold1024 WUBlastX DNA_PiggyBac 1080212 1080499 97 - . . scaffold1024 GLEAN mRNA 1078261 1083838 0.826098 - . ID=CGI_10028565; scaffold37772 WUBlastX DNA_Maverick 22880 23278 121 - . . scaffold37772 GLEAN mRNA 22803 28480 0.678428 - . ID=CGI_10002493; scaffold42408 WUBlastX LINE_L1-Tx1 112779 113108 91 + . . scaffold42408 GLEAN mRNA 111494 115012 0.832978 - . ID=CGI_10006751; scaffold1097 WUBlastX LTR_Ngaro 577982 578242 42 + . . scaffold1097 GLEAN mRNA 566282 590466 0.579339 - . ID=CGI_10024535; scaffold1097 WUBlastX LTR_Ngaro 578318 578374 22 + . . scaffold1097 GLEAN mRNA 566282 590466 0.579339 - . ID=CGI_10024535; scaffold1599 WUBlastX LTR_Gypsy 239923 240117 66 - . . scaffold1599 GLEAN mRNA 238916 249872 0.993706 - . ID=CGI_10027143; scaffold43076 WUBlastX DNA_IS4EU 67645 67869 109 + . . scaffold43076 GLEAN mRNA 66506 68912 0.997439 + . ID=CGI_10008761; scaffold198 WUBlastX DNA_NOF 1330577 1330741 119 - . . scaffold198 GLEAN mRNA 1312239 1337375 0.960179 - . ID=CGI_10027863; scaffold168 WUBlastX DNA_MuDR 178411 178497 30 - . . scaffold168 GLEAN mRNA 178276 183101 0.805771 - . ID=CGI_10025586; scaffold168 WUBlastX DNA_MuDR 178618 178851 34 - . . scaffold168 GLEAN mRNA 178276 183101 0.805771 - . ID=CGI_10025586; scaffold43500 WUBlastX LINE_L1 71688 71735 20 - . . scaffold43500 GLEAN mRNA 67492 74179 0.830032 - . ID=CGI_10010614; scaffold660 WUBlastX LINE_RTE-X 106995 107117 41 + . . scaffold660 GLEAN mRNA 98549 108257 0.999675 - . ID=CGI_10013750; scaffold290 WUBlastX LINE_RTE-X 188272 188622 25 + . . scaffold290 GLEAN mRNA 184166 208505 0.688957 - . ID=CGI_10018539; scaffold109 WUBlastX LINE_RTE-X 330266 330589 74 - . . scaffold109 GLEAN mRNA 303639 363474 0.446526 - . ID=CGI_10022113; scaffold1870 WUBlastX LINE_RTE-X 110284 110415 57 + . . scaffold1870 GLEAN mRNA 96078 123718 0.283709 - . ID=CGI_10013182; scaffold1532 WUBlastX DNA_PiggyBac 609146 609265 65 - . . scaffold1532 GLEAN mRNA 606606 610636 0.502786 - . ID=CGI_10028261; scaffold1815 WUBlastX LTR_Pao 44902 45222 34 - . . scaffold1815 GLEAN mRNA 41524 49047 0.999999 + . ID=CGI_10010261; scaffold115 WUBlastX LINE_CR1-L2 580695 581072 86 + . . scaffold115 GLEAN mRNA 575453 585479 0.845977 + . ID=CGI_10021407; scaffold499 WUBlastX LTR_DIRS 250678 251067 93 + . . scaffold499 GLEAN mRNA 249813 257188 0.581333 - . ID=CGI_10015767; scaffold1159 WUBlastX LINE_L2 160410 160634 35 + . . scaffold1159 GLEAN mRNA 140710 162801 0.966335 + . ID=CGI_10007977; scaffold1094 WUBlastX DNA_IS4EU 639356 639799 103 - . . scaffold1094 GLEAN mRNA 609558 640373 0.531771 - . ID=CGI_10021838; scaffold829 WUBlastX DNA_hAT-Tip100 99572 99745 143 - . . scaffold829 GLEAN mRNA 96076 100192 0.932887 + . ID=CGI_10021140; scaffold12 WUBlastX DNA_hAT-hATw 3359 3571 60 - . . scaffold12 GLEAN mRNA 533 12832 0.970295 + . ID=CGI_10018011; scaffold43 WUBlastX DNA_Harbinger 134557 134838 106 - . . scaffold43 GLEAN mRNA 134440 134838 1 - . ID=CGI_10021342; scaffold1188 WUBlastX DNA_Kolobok 218048 218254 79 + . . scaffold1188 GLEAN mRNA 212895 226684 0.80625 + . ID=CGI_10025463; scaffold290 WUBlastX LINE_RTE-BovB 60034 60429 109 - . . scaffold290 GLEAN mRNA 51430 74485 0.815504 + . ID=CGI_10018531; scaffold351 WUBlastX DNA_Sola 306897 307292 68 + . . scaffold351 GLEAN mRNA 306790 315103 0.777625 + . ID=CGI_10022605; scaffold203 WUBlastX DNA_Sola 12023 12880 20 - . . scaffold203 GLEAN mRNA 11885 13015 0.999039 - . ID=CGI_10021061; scaffold38510 WUBlastX DNA_TcMar-Tc1 20028 20267 99 - . . scaffold38510 GLEAN mRNA 7470 20879 0.242516 - . ID=CGI_10002810; scaffold38510 WUBlastX DNA_TcMar-Tc1 20028 20267 99 - . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold42990 WUBlastX LINE_RTE-X 86268 86651 111 + . . scaffold42990 GLEAN mRNA 72080 92253 0.276547 + . ID=CGI_10008376; scaffold305 WUBlastX LINE_RTE-X 36708 37079 120 + . . scaffold305 GLEAN mRNA 36185 38516 0.896803 - . ID=CGI_10019112; scaffold1219 WUBlastX LINE_L1-Tx1 870448 870834 82 - . . scaffold1219 GLEAN mRNA 868848 874682 0.999351 + . ID=CGI_10024304; scaffold43818 WUBlastX LTR_Gypsy-Cigr 321431 321904 152 + . . scaffold43818 GLEAN mRNA 318880 322672 0.37766 + . ID=CGI_10012777; scaffold1154 WUBlastX LTR_Ngaro 366212 366556 126 + . . scaffold1154 GLEAN mRNA 360464 375818 0.544657 - . ID=CGI_10026164; scaffold1154 WUBlastX LTR_Ngaro 366212 366556 126 + . . scaffold1154 GLEAN mRNA 365982 369978 0.558383 + . ID=CGI_10026165; scaffold38532 WUBlastX LTR_Ngaro 54971 55102 49 - . . scaffold38532 GLEAN mRNA 48785 56819 0.999998 - . ID=CGI_10002832; scaffold934 WUBlastX LTR_Ngaro 407221 407817 118 + . . scaffold934 GLEAN mRNA 385356 409492 0.99982 + . ID=CGI_10015451; scaffold1525 WUBlastX LTR_Ngaro 355098 355502 95 + . . scaffold1525 GLEAN mRNA 345189 363927 0.815102 - . ID=CGI_10013870; scaffold1551 WUBlastX LTR_Ngaro 72975 73748 93 + . . scaffold1551 GLEAN mRNA 48041 86336 0.263167 + . ID=CGI_10011471; scaffold253 WUBlastX LTR_Gypsy 3342 3881 91 - . . scaffold253 GLEAN mRNA 2368 20050 0.999351 + . ID=CGI_10003487; scaffold223 WUBlastX LTR_Gypsy 7292 7651 115 - . . scaffold223 GLEAN mRNA 942 7795 0.487602 - . ID=CGI_10012904; scaffold520 WUBlastX DNA_Kolobok 271366 272700 88 + . . scaffold520 GLEAN mRNA 268997 273270 0.917942 + . ID=CGI_10010959; scaffold37064 WUBlastX DNA_Kolobok-Hyd 27094 27891 52 - . . scaffold37064 GLEAN mRNA 26599 28359 0.814068 - . ID=CGI_10002260; scaffold1160 WUBlastX LINE_RTE-X 260141 260968 91 + . . scaffold1160 GLEAN mRNA 253181 264437 0.999999 - . ID=CGI_10015353; scaffold493 WUBlastX LINE_RTE-X 74273 74779 43 - . . scaffold493 GLEAN mRNA 57003 100421 0.916759 + . ID=CGI_10007247; scaffold1119 WUBlastX DNA_TcMar-Tc2 163182 163340 24 - . . scaffold1119 GLEAN mRNA 141381 182559 0.993006 - . ID=CGI_10009605; scaffold1067 WUBlastX LINE_L1-Tx1 107490 107942 61 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold1589 WUBlastX LTR_Gypsy-Cigr 284669 285253 139 - . . scaffold1589 GLEAN mRNA 279757 287553 0.968345 - . ID=CGI_10024110; scaffold880 WUBlastX LTR_Gypsy 511725 512039 28 + . . scaffold880 GLEAN mRNA 490990 515117 0.998312 - . ID=CGI_10022196; scaffold756 WUBlastX LINE_I 456448 456489 23 - . . scaffold756 GLEAN mRNA 435099 464068 0.998247 - . ID=CGI_10016467; scaffold1692 WUBlastX LINE_L1-Tx1 52934 53344 104 - . . scaffold1692 GLEAN mRNA 40202 58829 0.152045 + . ID=CGI_10004025; scaffold38934 WUBlastX LTR_Ngaro 20660 21313 93 - . . scaffold38934 GLEAN mRNA 14643 26625 0.999796 + . ID=CGI_10003096; scaffold109 WUBlastX DNA_TcMar-Tc1 252772 253380 61 - . . scaffold109 GLEAN mRNA 221861 297851 0.997753 - . ID=CGI_10022112; scaffold784 WUBlastX LINE_RTE-BovB 303497 304150 159 + . . scaffold784 GLEAN mRNA 298825 308897 0.999951 - . ID=CGI_10024422; scaffold1792 WUBlastX LINE_RTE-X 260278 262065 762 + . . scaffold1792 GLEAN mRNA 252899 271519 0.999949 - . ID=CGI_10012749; scaffold678 WUBlastX LINE_L2 647458 647925 129 + . . scaffold678 GLEAN mRNA 636648 664664 0.986036 - . ID=CGI_10026369; scaffold1866 WUBlastX LINE_CR1 204700 204792 20 + . . scaffold1866 GLEAN mRNA 197037 209666 0.769721 - . ID=CGI_10017910; scaffold1174 WUBlastX LINE_L1 169463 170149 95 + . . scaffold1174 GLEAN mRNA 165948 193006 0.453368 - . ID=CGI_10026029; scaffold880 WUBlastX LINE_Penelope 91701 92102 126 + . . scaffold880 GLEAN mRNA 88452 95761 0.999285 + . ID=CGI_10022181; scaffold1844 WUBlastX LINE_RTE-BovB 125717 125818 29 + . . scaffold1844 GLEAN mRNA 108283 134853 0.924542 + . ID=CGI_10006619; scaffold578 WUBlastX LINE_RTE-X 349831 350235 134 + . . scaffold578 GLEAN mRNA 348664 361929 0.458006 + . ID=CGI_10015130; scaffold1792 WUBlastX LTR_Gypsy 329256 329351 26 + . . scaffold1792 GLEAN mRNA 322843 336201 0.992772 - . ID=CGI_10012752; scaffold1792 WUBlastX LTR_Gypsy 329278 330099 237 + . . scaffold1792 GLEAN mRNA 322843 336201 0.992772 - . ID=CGI_10012752; scaffold1792 WUBlastX LTR_Gypsy 330103 330384 132 + . . scaffold1792 GLEAN mRNA 322843 336201 0.992772 - . ID=CGI_10012752; scaffold301 WUBlastX LINE_RTE-X 394959 395792 170 - . . scaffold301 GLEAN mRNA 385076 401217 0.811406 + . ID=CGI_10026720; scaffold1350 WUBlastX LTR_DIRS 468883 469509 252 + . . scaffold1350 GLEAN mRNA 448816 473345 0.450856 - . ID=CGI_10017319; scaffold43804 WUBlastX LINE_L2 208107 208580 91 + . . scaffold43804 GLEAN mRNA 206873 222843 0.544849 - . ID=CGI_10012559; scaffold610 WUBlastX LTR_Gypsy 129884 130237 135 - . . scaffold610 GLEAN mRNA 126484 141606 0.728666 + . ID=CGI_10021092; scaffold85 WUBlastX LTR_Gypsy 634497 635528 127 - . . scaffold85 GLEAN mRNA 611975 636254 1 - . ID=CGI_10020719; scaffold1203 WUBlastX LINE_R2-Hero 96821 97435 67 + . . scaffold1203 GLEAN mRNA 96599 98385 0.992512 + . ID=CGI_10010424; scaffold1244 WUBlastX LTR_Gypsy 123312 123701 83 - . . scaffold1244 GLEAN mRNA 121009 134472 0.646055 + . ID=CGI_10020823; scaffold138 WUBlastX LINE_L1-Tx1 75704 75919 49 - . . scaffold138 GLEAN mRNA 71718 76716 0.998636 - . ID=CGI_10008427; scaffold138 WUBlastX LINE_L1-Tx1 75918 76130 70 - . . scaffold138 GLEAN mRNA 71718 76716 0.998636 - . ID=CGI_10008427; scaffold504 WUBlastX LINE_RTE-X 235906 236277 100 - . . scaffold504 GLEAN mRNA 229448 243335 1 - . ID=CGI_10016027; scaffold230 WUBlastX LTR_Ngaro 196310 196600 47 + . . scaffold230 GLEAN mRNA 178498 220276 0.270873 - . ID=CGI_10011252; scaffold1107 WUBlastX LINE_L1-Tx1 42662 43069 65 - . . scaffold1107 GLEAN mRNA 25384 68274 0.797312 + . ID=CGI_10004768; scaffold1107 WUBlastX LINE_L1-Tx1 43030 43113 35 - . . scaffold1107 GLEAN mRNA 25384 68274 0.797312 + . ID=CGI_10004768; scaffold534 WUBlastX LTR_Gypsy-Cigr 69574 70653 447 - . . scaffold534 GLEAN mRNA 66095 75550 0.716363 + . ID=CGI_10005164; scaffold847 WUBlastX LTR_DIRS 511809 512111 79 - . . scaffold847 GLEAN mRNA 507894 513184 0.74223 - . ID=CGI_10022280; scaffold94 WUBlastX DNA_hAT-Blackja 118806 119738 558 + . . scaffold94 GLEAN mRNA 111860 132138 0.804225 + . ID=CGI_10013913; scaffold94 WUBlastX DNA_hAT-Blackja 120038 120616 178 + . . scaffold94 GLEAN mRNA 111860 132138 0.804225 + . ID=CGI_10013913; scaffold94 WUBlastX DNA_hAT-Blackja 120703 121077 171 + . . scaffold94 GLEAN mRNA 111860 132138 0.804225 + . ID=CGI_10013913; scaffold43538 WUBlastX LTR_Gypsy 34574 34780 186 + . . scaffold43538 GLEAN mRNA 31086 35366 0.988787 - . ID=CGI_10010813; scaffold94 WUBlastX LTR_Gypsy-Cigr 67471 68613 376 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold507 WUBlastX LTR_Ngaro 42099 42575 169 - . . scaffold507 GLEAN mRNA 41380 65568 0.398486 - . ID=CGI_10019084; scaffold1001 WUBlastX LINE_RTE-X 129058 129174 29 - . . scaffold1001 GLEAN mRNA 107697 137690 0.433806 + . ID=CGI_10007119; scaffold854 WUBlastX LINE_RTE-X 450423 450836 119 - . . scaffold854 GLEAN mRNA 397662 453116 0.849104 + . ID=CGI_10022252; scaffold43786 WUBlastX LINE_L1-Tx1 248047 249228 438 - . . scaffold43786 GLEAN mRNA 234476 275282 0.999342 - . ID=CGI_10012356; scaffold43786 WUBlastX LINE_L1-Tx1 249388 250305 554 - . . scaffold43786 GLEAN mRNA 234476 275282 0.999342 - . ID=CGI_10012356; scaffold804 WUBlastX LTR_Gypsy 167932 169701 756 - . . scaffold804 GLEAN mRNA 160406 170673 0.986312 - . ID=CGI_10014856; scaffold57 WUBlastX DNA_hAT 300416 301078 127 + . . scaffold57 GLEAN mRNA 297762 301894 1 + . ID=CGI_10020550; scaffold1719 WUBlastX LTR_Ngaro 197178 197282 28 - . . scaffold1719 GLEAN mRNA 177172 199114 0.99732 - . ID=CGI_10014281; scaffold40928 WUBlastX DNA_Kolobok 65942 66136 76 - . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold1565 WUBlastX LINE_L1-Tx1 7817 7951 23 - . . scaffold1565 GLEAN mRNA 460 9199 1 + . ID=CGI_10000778; scaffold101 WUBlastX DNA_MuDR 678020 678220 68 + . . scaffold101 GLEAN mRNA 676539 710927 0.888019 - . ID=CGI_10021653; scaffold481 WUBlastX LINE_L1-Tx1 1234419 1234721 76 + . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold38978 WUBlastX DNA_TcMar-Tc1 2983 3255 63 + . . scaffold38978 GLEAN mRNA 443 10686 0.499437 + . ID=CGI_10003126; scaffold43616 WUBlastX LINE_RTE-X 197050 197760 224 - . . scaffold43616 GLEAN mRNA 187064 211275 0.700682 + . ID=CGI_10011425; scaffold43616 WUBlastX LINE_RTE-X 197744 198022 168 - . . scaffold43616 GLEAN mRNA 187064 211275 0.700682 + . ID=CGI_10011425; scaffold43616 WUBlastX LINE_RTE-X 198422 199459 627 - . . scaffold43616 GLEAN mRNA 187064 211275 0.700682 + . ID=CGI_10011425; scaffold43616 WUBlastX LINE_RTE-X 199465 199872 209 - . . scaffold43616 GLEAN mRNA 187064 211275 0.700682 + . ID=CGI_10011425; scaffold37760 WUBlastX LTR_Gypsy 11326 13692 767 + . . scaffold37760 GLEAN mRNA 11272 38265 0.979677 + . ID=CGI_10002466; scaffold42030 WUBlastX LINE_RTE-X 78965 80656 719 + . . scaffold42030 GLEAN mRNA 73599 103190 0.98897 + . ID=CGI_10006046; scaffold39966 WUBlastX LTR_Gypsy 8979 9344 187 + . . scaffold39966 GLEAN mRNA 5670 20559 0.999675 + . ID=CGI_10003724; scaffold39966 WUBlastX LTR_Gypsy 9346 10857 484 + . . scaffold39966 GLEAN mRNA 5670 20559 0.999675 + . ID=CGI_10003724; scaffold39966 WUBlastX LTR_Gypsy 10875 11567 499 + . . scaffold39966 GLEAN mRNA 5670 20559 0.999675 + . ID=CGI_10003724; scaffold387 WUBlastX LTR_Gypsy 35180 35461 50 - . . scaffold387 GLEAN mRNA 27360 40673 0.998991 + . ID=CGI_10004497; scaffold522 WUBlastX LTR_Gypsy 555939 556103 90 - . . scaffold522 GLEAN mRNA 555460 561290 0.999999 + . ID=CGI_10020338; scaffold954 WUBlastX LINE_RTE-X 221072 221437 38 - . . scaffold954 GLEAN mRNA 220872 230195 0.904789 - . ID=CGI_10010745; scaffold896 WUBlastX LINE_L1-Tx1 313060 314343 121 - . . scaffold896 GLEAN mRNA 298848 329619 0.997833 - . ID=CGI_10022840; scaffold896 WUBlastX LINE_L1-Tx1 314319 316364 909 - . . scaffold896 GLEAN mRNA 298848 329619 0.997833 - . ID=CGI_10022840; scaffold1004 WUBlastX LINE_RTE-BovB 486212 486268 25 - . . scaffold1004 GLEAN mRNA 463295 491476 0.997732 - . ID=CGI_10020781; scaffold172 WUBlastX LTR_Gypsy 16648 16839 46 + . . scaffold172 GLEAN mRNA 5002 17897 0.999274 - . ID=CGI_10013508; scaffold301 WUBlastX LINE_Jockey 395957 397165 71 - . . scaffold301 GLEAN mRNA 385076 401217 0.811406 + . ID=CGI_10026720; scaffold1816 WUBlastX DNA_Kolobok 208183 208353 32 + . . scaffold1816 GLEAN mRNA 205470 210228 0.819371 + . ID=CGI_10014402; scaffold1816 WUBlastX DNA_Kolobok 209255 209371 43 + . . scaffold1816 GLEAN mRNA 205470 210228 0.819371 + . ID=CGI_10014402; scaffold1816 WUBlastX DNA_Kolobok 209712 209921 66 + . . scaffold1816 GLEAN mRNA 205470 210228 0.819371 + . ID=CGI_10014402; scaffold39858 WUBlastX DNA_Kolobok 11319 11366 102 - . . scaffold39858 GLEAN mRNA 10188 11366 1 - . ID=CGI_10003659; scaffold35014 WUBlastX DNA_PiggyBac 16241 16519 113 + . . scaffold35014 GLEAN mRNA 9316 21495 0.996281 + . ID=CGI_10001389; scaffold42840 WUBlastX LINE_RTE-X 139279 139791 161 + . . scaffold42840 GLEAN mRNA 134311 145100 0.999472 - . ID=CGI_10007836; scaffold676 WUBlastX LINE_RTE-X 577030 577305 148 - . . scaffold676 GLEAN mRNA 560023 599101 0.378138 + . ID=CGI_10021432; scaffold1442 WUBlastX LINE_L1-Tx1 19599 19874 50 - . . scaffold1442 GLEAN mRNA 5012 20569 0.987275 - . ID=CGI_10003583; scaffold1442 WUBlastX LINE_L1-Tx1 19897 20304 101 - . . scaffold1442 GLEAN mRNA 5012 20569 0.987275 - . ID=CGI_10003583; scaffold406 WUBlastX LTR_Gypsy-Cigr 134178 134408 104 + . . scaffold406 GLEAN mRNA 128241 151323 0.854188 - . ID=CGI_10023840; scaffold406 WUBlastX LTR_Gypsy-Cigr 136517 137059 187 + . . scaffold406 GLEAN mRNA 128241 151323 0.854188 - . ID=CGI_10023840; scaffold1546 WUBlastX DNA_Helitron 190968 191624 43 + . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold1054 WUBlastX LINE_L2 312999 313223 100 + . . scaffold1054 GLEAN mRNA 312606 322566 0.968602 + . ID=CGI_10012967; scaffold1771 WUBlastX LTR_Gypsy 90200 91474 505 - . . scaffold1771 GLEAN mRNA 88638 95441 0.521534 - . ID=CGI_10004387; scaffold934 WUBlastX DNA_En-Spm 283726 285102 122 + . . scaffold934 GLEAN mRNA 282815 291724 0.901828 + . ID=CGI_10015447; scaffold43562 WUBlastX LINE_CR1 167151 167594 193 + . . scaffold43562 GLEAN mRNA 166638 176461 0.999676 + . ID=CGI_10011038; scaffold43562 WUBlastX LINE_CR1 167151 167594 193 + . . scaffold43562 GLEAN mRNA 156935 180007 0.944081 - . ID=CGI_10011037; scaffold533 WUBlastX LINE_CR1-L2 96089 96688 201 + . . scaffold533 GLEAN mRNA 82717 99405 0.998409 - . ID=CGI_10005555; scaffold933 WUBlastX LINE_L2 320919 321002 24 + . . scaffold933 GLEAN mRNA 320919 329030 0.990126 + . ID=CGI_10016722; scaffold1253 WUBlastX LTR_Gypsy 41868 43061 149 + . . scaffold1253 GLEAN mRNA 16186 44891 0.331456 + . ID=CGI_10004818; scaffold1316 WUBlastX LINE_L1-Tx1 369801 370202 135 - . . scaffold1316 GLEAN mRNA 367063 406080 0.346646 - . ID=CGI_10016312; scaffold1656 WUBlastX LTR_Gypsy-Troyk 74783 76264 75 + . . scaffold1656 GLEAN mRNA 73832 80261 0.912224 + . ID=CGI_10006143; scaffold1706 WUBlastX LINE_L1-Tx1 45618 46463 66 + . . scaffold1706 GLEAN mRNA 37786 56373 0.330403 - . ID=CGI_10003662; scaffold35486 WUBlastX LINE_RTE-X 15426 16019 110 - . . scaffold35486 GLEAN mRNA 8513 17205 0.999998 - . ID=CGI_10001528; scaffold1032 WUBlastX DNA_Sola 22807 22980 26 + . . scaffold1032 GLEAN mRNA 21338 23952 0.840259 + . ID=CGI_10021656; scaffold1032 WUBlastX DNA_Sola 23311 23418 21 + . . scaffold1032 GLEAN mRNA 21338 23952 0.840259 + . ID=CGI_10021656; scaffold1032 WUBlastX DNA_Sola 23494 23949 103 + . . scaffold1032 GLEAN mRNA 21338 23952 0.840259 + . ID=CGI_10021656; scaffold499 WUBlastX LTR_Ngaro 25831 26064 144 + . . scaffold499 GLEAN mRNA 22718 44589 1 + . ID=CGI_10015760; scaffold274 WUBlastX LTR_Gypsy 120495 121184 130 - . . scaffold274 GLEAN mRNA 114872 127603 0.900499 - . ID=CGI_10017014; scaffold274 WUBlastX LTR_Gypsy 120495 121184 130 - . . scaffold274 GLEAN mRNA 110645 138083 0.999675 + . ID=CGI_10017013; scaffold42 WUBlastX DNA_Kolobok 367098 367319 41 + . . scaffold42 GLEAN mRNA 366625 368271 0.99869 + . ID=CGI_10018915; C34110 WUBlastX DNA_IS4EU 13670 14296 208 - . . C34110 GLEAN mRNA 2583 15463 0.431065 - . ID=CGI_10001212; scaffold1855 WUBlastX LINE_RTE-X 205682 206389 158 - . . scaffold1855 GLEAN mRNA 188156 207855 0.999324 - . ID=CGI_10008876; scaffold163 WUBlastX LTR_Gypsy 479811 480281 351 + . . scaffold163 GLEAN mRNA 440738 483510 0.311673 + . ID=CGI_10018629; scaffold163 WUBlastX LTR_Gypsy 482018 482692 402 + . . scaffold163 GLEAN mRNA 440738 483510 0.311673 + . ID=CGI_10018629; scaffold1532 WUBlastX LTR_Gypsy 394527 395360 569 + . . scaffold1532 GLEAN mRNA 391874 403369 0.462643 + . ID=CGI_10028249; scaffold1532 WUBlastX LTR_Gypsy 395371 396450 738 + . . scaffold1532 GLEAN mRNA 391874 403369 0.462643 + . ID=CGI_10028249; scaffold39900 WUBlastX DNA_Maverick 67619 69724 1279 - . . scaffold39900 GLEAN mRNA 63800 72994 0.885101 + . ID=CGI_10003685; scaffold626 WUBlastX DNA_hAT 190176 190427 37 + . . scaffold626 GLEAN mRNA 185398 190939 0.996819 + . ID=CGI_10019986; scaffold37664 WUBlastX LINE_CR1-L2 30090 30722 236 + . . scaffold37664 GLEAN mRNA 26553 34965 0.581431 + . ID=CGI_10002440; scaffold1791 WUBlastX LTR_Ngaro 97305 97916 185 + . . scaffold1791 GLEAN mRNA 83527 103062 0.896369 - . ID=CGI_10007868; scaffold772 WUBlastX DNA_PiggyBac 283905 284060 50 + . . scaffold772 GLEAN mRNA 277746 285976 1 + . ID=CGI_10016590; scaffold40638 WUBlastX LINE_L2 43445 43801 115 + . . scaffold40638 GLEAN mRNA 41609 59545 0.679878 - . ID=CGI_10004286; scaffold40638 WUBlastX LINE_L2 43811 44065 50 + . . scaffold40638 GLEAN mRNA 41609 59545 0.679878 - . ID=CGI_10004286; scaffold1094 WUBlastX LINE_L1-Tx1 630562 631674 87 + . . scaffold1094 GLEAN mRNA 609558 640373 0.531771 - . ID=CGI_10021838; scaffold41816 WUBlastX LTR_Ngaro 24223 24567 119 - . . scaffold41816 GLEAN mRNA 6032 28025 0.728522 - . ID=CGI_10005647; scaffold1021 WUBlastX LTR_Pao 586970 587278 24 - . . scaffold1021 GLEAN mRNA 573402 587681 0.999217 - . ID=CGI_10022504; scaffold655 WUBlastX LINE_CR1-L2 320876 321385 214 - . . scaffold655 GLEAN mRNA 288551 322246 0.783926 + . ID=CGI_10014958; scaffold780 WUBlastX LINE_L2 150167 150931 111 - . . scaffold780 GLEAN mRNA 138989 166483 0.986281 + . ID=CGI_10024719; scaffold733 WUBlastX DNA_Kolobok 375766 375822 30 + . . scaffold733 GLEAN mRNA 372581 407469 0.843432 + . ID=CGI_10025875; scaffold38210 WUBlastX LINE_L1 22348 22920 209 + . . scaffold38210 GLEAN mRNA 7747 30035 0.24289 - . ID=CGI_10002673; scaffold115 WUBlastX LINE_L1 130720 131259 224 - . . scaffold115 GLEAN mRNA 126783 131612 1 - . ID=CGI_10021378; scaffold513 WUBlastX LTR_Pao 9573 10559 399 + . . scaffold513 GLEAN mRNA 2113 39536 0.917684 + . ID=CGI_10022134; scaffold513 WUBlastX LTR_Pao 13064 13495 316 + . . scaffold513 GLEAN mRNA 2113 39536 0.917684 + . ID=CGI_10022134; scaffold43446 WUBlastX LINE_CR1 161921 163021 188 + . . scaffold43446 GLEAN mRNA 154155 168433 0.907649 - . ID=CGI_10010403; scaffold870 WUBlastX LTR_Gypsy 140599 141330 267 - . . scaffold870 GLEAN mRNA 139854 163294 0.423462 + . ID=CGI_10007496; scaffold1138 WUBlastX DNA_P 189705 190187 124 + . . scaffold1138 GLEAN mRNA 183755 192154 0.999676 - . ID=CGI_10015373; scaffold1138 WUBlastX DNA_P 189705 190187 124 + . . scaffold1138 GLEAN mRNA 186841 191383 0.716431 + . ID=CGI_10015374; scaffold1525 WUBlastX LINE_L1 42019 42144 23 + . . scaffold1525 GLEAN mRNA 22768 58796 0.21079 + . ID=CGI_10013853; scaffold351 WUBlastX LINE_L1-Tx1 312738 313628 169 - . . scaffold351 GLEAN mRNA 306790 315103 0.777625 + . ID=CGI_10022605; scaffold36526 WUBlastX LINE_L1-Tx1 20526 20948 45 - . . scaffold36526 GLEAN mRNA 10575 29087 0.999676 + . ID=CGI_10002008; scaffold1680 WUBlastX LTR_Gypsy-Cigr 73494 74306 577 + . . scaffold1680 GLEAN mRNA 60137 87573 0.648461 - . ID=CGI_10004140; scaffold36936 WUBlastX LTR_Pao 18042 18434 55 - . . scaffold36936 GLEAN mRNA 314 25498 0.932631 - . ID=CGI_10002182; scaffold3 WUBlastX LTR_Ngaro 949003 949599 265 + . . scaffold3 GLEAN mRNA 946459 958838 0.555132 + . ID=CGI_10027316; scaffold847 WUBlastX LTR_DIRS 509286 510176 147 - . . scaffold847 GLEAN mRNA 507894 513184 0.74223 - . ID=CGI_10022280; scaffold631 WUBlastX LINE_RTE-X 224978 225652 140 + . . scaffold631 GLEAN mRNA 219246 234334 0.970776 - . ID=CGI_10014178; scaffold38966 WUBlastX DNA_TcMar-Tc1 52595 53455 205 + . . scaffold38966 GLEAN mRNA 40711 56502 0.505852 + . ID=CGI_10003113; scaffold1031 WUBlastX DNA_TcMar-Tc1 592219 593214 147 - . . scaffold1031 GLEAN mRNA 571823 599273 0.583554 - . ID=CGI_10019718; scaffold852 WUBlastX LTR_Gypsy-Cigr 66717 69767 2144 - . . scaffold852 GLEAN mRNA 66203 74351 1 + . ID=CGI_10012036; scaffold1532 WUBlastX LINE_RTE-X 327178 330675 2069 - . . scaffold1532 GLEAN mRNA 321703 334271 0.99935 + . ID=CGI_10028244; scaffold1532 WUBlastX LINE_RTE-X 327178 330675 2069 - . . scaffold1532 GLEAN mRNA 325933 331440 0.918094 - . ID=CGI_10028245; scaffold1862 WUBlastX DNA_Kolobok-IS4 657641 658153 51 + . . scaffold1862 GLEAN mRNA 655247 661635 1 - . ID=CGI_10021923; scaffold569 WUBlastX LINE_L1-Tx1 162648 163427 173 - . . scaffold569 GLEAN mRNA 133999 168874 0.674144 + . ID=CGI_10009498; scaffold53 WUBlastX DNA_TcMar-Fot1 1004300 1005121 134 + . . scaffold53 GLEAN mRNA 983465 1007230 0.466135 - . ID=CGI_10026695; scaffold368 WUBlastX LTR_Gypsy 487684 489363 1076 - . . scaffold368 GLEAN mRNA 456734 493375 0.348019 + . ID=CGI_10018714; scaffold734 WUBlastX LINE_L2 20145 20786 252 - . . scaffold734 GLEAN mRNA 15567 24465 0.477862 - . ID=CGI_10003361; scaffold230 WUBlastX LTR_DIRS 218641 219048 328 - . . scaffold230 GLEAN mRNA 178498 220276 0.270873 - . ID=CGI_10011252; scaffold1318 WUBlastX DNA_TcMar-Tc1 47841 48137 75 + . . scaffold1318 GLEAN mRNA 47679 59079 0.328272 + . ID=CGI_10008644; scaffold469 WUBlastX LTR_Pao 621467 621871 134 - . . scaffold469 GLEAN mRNA 620008 639653 0.99956 + . ID=CGI_10024690; scaffold1800 WUBlastX LTR_Gypsy 7906 8211 61 + . . scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; scaffold3 WUBlastX LTR_Ngaro 1314969 1315355 171 - . . scaffold3 GLEAN mRNA 1314645 1318382 0.999612 - . ID=CGI_10027337; scaffold1125 WUBlastX DNA_hAT 197646 198398 294 - . . scaffold1125 GLEAN mRNA 189933 228052 0.366465 - . ID=CGI_10012338; scaffold815 WUBlastX LINE_RTE-X 8896 9258 145 + . . scaffold815 GLEAN mRNA 3623 27508 0.999835 - . ID=CGI_10001932; scaffold1249 WUBlastX LINE_CR1-L2 259651 260139 22 - . . scaffold1249 GLEAN mRNA 253670 268651 0.545459 - . ID=CGI_10019058; scaffold1249 WUBlastX LINE_CR1-L2 260138 260662 249 - . . scaffold1249 GLEAN mRNA 253670 268651 0.545459 - . ID=CGI_10019058; scaffold43708 WUBlastX LINE_L2 237762 238427 293 - . . scaffold43708 GLEAN mRNA 223509 253864 0.998643 + . ID=CGI_10011974; scaffold1603 WUBlastX LTR_Pao 331952 332011 40 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold1647 WUBlastX DNA_En-Spm 159261 159440 132 + . . scaffold1647 GLEAN mRNA 157870 163808 0.957006 - . ID=CGI_10008141; scaffold1647 WUBlastX DNA_En-Spm 159439 159855 204 + . . scaffold1647 GLEAN mRNA 157870 163808 0.957006 - . ID=CGI_10008141; scaffold41452 WUBlastX LINE_L2 63140 63463 140 + . . scaffold41452 GLEAN mRNA 56340 65838 0.524499 + . ID=CGI_10005081; scaffold619 WUBlastX DNA_hAT-hATw 950997 952025 43 + . . scaffold619 GLEAN mRNA 949722 959476 0.544338 - . ID=CGI_10025794; scaffold617 WUBlastX LINE_RTE-X 115143 115994 239 - . . scaffold617 GLEAN mRNA 115032 115994 0.999999 - . ID=CGI_10012723; scaffold1277 WUBlastX LINE_RTE-X 82723 82893 78 + . . scaffold1277 GLEAN mRNA 76656 92744 0.765999 - . ID=CGI_10008022; scaffold40836 WUBlastX LINE_RTE-X 87513 87587 27 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold243 WUBlastX RC_Helitron 13481 13903 384 - . . scaffold243 GLEAN mRNA 6831 23380 0.981358 - . ID=CGI_10006809; scaffold492 WUBlastX LINE_L2 268288 269298 264 - . . scaffold492 GLEAN mRNA 268203 287677 0.999027 + . ID=CGI_10024818; scaffold674 WUBlastX LTR_Ngaro 14475 15158 206 + . . scaffold674 GLEAN mRNA 11758 15607 0.993811 + . ID=CGI_10002488; scaffold42890 WUBlastX DNA_Sola 184025 185131 339 - . . scaffold42890 GLEAN mRNA 182304 199068 0.438528 - . ID=CGI_10008045; scaffold140 WUBlastX LINE_L2 343886 344263 122 - . . scaffold140 GLEAN mRNA 327930 353126 0.379108 + . ID=CGI_10020135; scaffold140 WUBlastX LINE_L2 345473 345808 72 - . . scaffold140 GLEAN mRNA 327930 353126 0.379108 + . ID=CGI_10020135; scaffold140 WUBlastX LINE_L2 345473 345808 72 - . . scaffold140 GLEAN mRNA 344940 369951 0.671174 - . ID=CGI_10020136; scaffold508 WUBlastX LTR_Gypsy 15869 16192 173 - . . scaffold508 GLEAN mRNA 12073 17406 0.968836 - . ID=CGI_10011191; scaffold43008 WUBlastX LINE_RTE-X 3650 3841 59 + . . scaffold43008 GLEAN mRNA 2147 17942 0.982229 + . ID=CGI_10008457; scaffold43008 WUBlastX LINE_RTE-X 4122 4418 84 + . . scaffold43008 GLEAN mRNA 2147 17942 0.982229 + . ID=CGI_10008457; scaffold934 WUBlastX LINE_L1-Tx1 266708 268096 232 - . . scaffold934 GLEAN mRNA 262254 282098 1 - . ID=CGI_10015446; scaffold1376 WUBlastX LINE_L1-Tx1 44465 44611 111 - . . scaffold1376 GLEAN mRNA 39109 52499 0.502849 - . ID=CGI_10002795; scaffold815 WUBlastX LINE_RTE-X 9276 9440 111 + . . scaffold815 GLEAN mRNA 3623 27508 0.999835 - . ID=CGI_10001932; scaffold19 WUBlastX DNA_TcMar-Tc1 152712 153215 174 - . . scaffold19 GLEAN mRNA 151397 159937 0.999878 + . ID=CGI_10010837; scaffold610 WUBlastX LTR_Gypsy 569223 569300 43 + . . scaffold610 GLEAN mRNA 561259 570035 0.686247 - . ID=CGI_10021130; scaffold1036 WUBlastX DNA_Maverick 202831 203238 129 - . . scaffold1036 GLEAN mRNA 202062 206192 0.444605 - . ID=CGI_10019953; scaffold933 WUBlastX LINE_RTE-X 322242 323891 210 + . . scaffold933 GLEAN mRNA 320919 329030 0.990126 + . ID=CGI_10016722; scaffold698 WUBlastX LTR_DIRS 82737 84845 354 - . . scaffold698 GLEAN mRNA 81586 93981 0.592995 - . ID=CGI_10020727; scaffold509 WUBlastX DNA_TcMar-Tc1 17073 17654 355 + . . scaffold509 GLEAN mRNA 496 19427 0.999716 - . ID=CGI_10018635; scaffold492 WUBlastX DNA_TcMar-Tc1 201627 202487 261 - . . scaffold492 GLEAN mRNA 196390 218275 0.791674 + . ID=CGI_10024813; scaffold1186 WUBlastX LINE_L1-Tx1 238333 238812 21 + . . scaffold1186 GLEAN mRNA 224167 244631 0.351511 - . ID=CGI_10010599; scaffold298 WUBlastX LTR_Gypsy 277879 278697 433 - . . scaffold298 GLEAN mRNA 275559 284249 0.999682 - . ID=CGI_10018823; scaffold1345 WUBlastX LTR_Gypsy 241500 241631 58 - . . scaffold1345 GLEAN mRNA 239892 251479 1 - . ID=CGI_10016283; scaffold591 WUBlastX LTR_Ngaro 600080 600889 307 - . . scaffold591 GLEAN mRNA 577441 607957 0.997895 + . ID=CGI_10027576; C36680 WUBlastX LINE_CR1 9207 9587 182 - . . C36680 GLEAN mRNA 2216 22548 0.727902 - . ID=CGI_10002070; C36680 WUBlastX LINE_CR1 9659 9832 106 - . . C36680 GLEAN mRNA 2216 22548 0.727902 - . ID=CGI_10002070; C36680 WUBlastX LINE_CR1 10596 10697 68 - . . C36680 GLEAN mRNA 2216 22548 0.727902 - . ID=CGI_10002070; C36680 WUBlastX LINE_CR1 10720 11013 56 - . . C36680 GLEAN mRNA 2216 22548 0.727902 - . ID=CGI_10002070; scaffold247 WUBlastX LINE_L1-Tx1 330585 331448 191 - . . scaffold247 GLEAN mRNA 324544 333278 0.675637 - . ID=CGI_10018594; scaffold517 WUBlastX LINE_L1 199290 199436 46 - . . scaffold517 GLEAN mRNA 188444 202746 0.541804 + . ID=CGI_10008984; scaffold188 WUBlastX DNA_Zator 12671 13783 391 + . . scaffold188 GLEAN mRNA 7770 17806 0.999204 + . ID=CGI_10009311; scaffold40916 WUBlastX LINE_L1 39879 39992 27 + . . scaffold40916 GLEAN mRNA 5250 52256 0.246631 + . ID=CGI_10004570; scaffold546 WUBlastX LINE_L1 147078 148313 186 + . . scaffold546 GLEAN mRNA 136572 153074 0.999871 - . ID=CGI_10020995; scaffold632 WUBlastX LINE_L2 482905 483102 50 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold550 WUBlastX LINE_L1-Tx1 61940 62035 20 - . . scaffold550 GLEAN mRNA 42295 70110 0.723644 + . ID=CGI_10012483; scaffold756 WUBlastX LTR_Pao 180315 180770 170 - . . scaffold756 GLEAN mRNA 174962 194451 0.721563 + . ID=CGI_10016458; scaffold815 WUBlastX DNA_hAT-hATw 19971 21215 420 - . . scaffold815 GLEAN mRNA 3623 27508 0.999835 - . ID=CGI_10001932; scaffold1788 WUBlastX DNA_Maverick 56746 57120 208 - . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold1788 WUBlastX DNA_Maverick 57825 57941 37 - . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold40154 WUBlastX LTR_Ngaro 27520 28065 230 - . . scaffold40154 GLEAN mRNA 26301 32486 0.434456 - . ID=CGI_10003875; scaffold40154 WUBlastX LTR_Ngaro 28046 28267 146 - . . scaffold40154 GLEAN mRNA 26301 32486 0.434456 - . ID=CGI_10003875; scaffold847 WUBlastX RC_Helitron 436670 436882 58 - . . scaffold847 GLEAN mRNA 435807 447835 0.572478 + . ID=CGI_10022278; scaffold847 WUBlastX RC_Helitron 437364 437846 168 - . . scaffold847 GLEAN mRNA 435807 447835 0.572478 + . ID=CGI_10022278; scaffold34106 WUBlastX LTR_DIRS 13222 14289 418 + . . scaffold34106 GLEAN mRNA 1207 14937 0.504518 - . ID=CGI_10001211; scaffold509 WUBlastX LTR_Ngaro 93259 93717 166 + . . scaffold509 GLEAN mRNA 91758 98346 0.858612 - . ID=CGI_10018642; scaffold243 WUBlastX LTR_Gypsy 117568 117699 75 - . . scaffold243 GLEAN mRNA 107331 122281 0.913043 + . ID=CGI_10006817; scaffold1204 WUBlastX LTR_Pao 38424 38672 491 + . . scaffold1204 GLEAN mRNA 17672 38672 0.500149 - . ID=CGI_10009804; scaffold506 WUBlastX LTR_DIRS 522445 522730 385 + . . scaffold506 GLEAN mRNA 522445 523350 0.999997 + . ID=CGI_10019280; scaffold514 WUBlastX LTR_Gypsy 456049 456459 180 - . . scaffold514 GLEAN mRNA 444665 473776 0.661186 - . ID=CGI_10018365; scaffold815 WUBlastX LINE_RTE-X 9458 9967 89 + . . scaffold815 GLEAN mRNA 3623 27508 0.999835 - . ID=CGI_10001932; scaffold41162 WUBlastX LTR_Gypsy-Cigr 89296 89577 147 - . . scaffold41162 GLEAN mRNA 73852 107906 0.526733 + . ID=CGI_10004777; scaffold41162 WUBlastX LTR_Gypsy-Cigr 89894 90043 132 - . . scaffold41162 GLEAN mRNA 73852 107906 0.526733 + . ID=CGI_10004777; scaffold308 WUBlastX DNA_hAT-Tip100 102451 102801 147 - . . scaffold308 GLEAN mRNA 89849 109933 0.990769 - . ID=CGI_10011007; scaffold308 WUBlastX DNA_hAT-Tip100 102734 103567 181 - . . scaffold308 GLEAN mRNA 89849 109933 0.990769 - . ID=CGI_10011007; scaffold308 WUBlastX DNA_hAT-Tip100 103776 104192 159 - . . scaffold308 GLEAN mRNA 89849 109933 0.990769 - . ID=CGI_10011007; scaffold1873 WUBlastX RC_Helitron 56072 56575 196 - . . scaffold1873 GLEAN mRNA 42995 66497 0.656652 + . ID=CGI_10009291; scaffold162 WUBlastX LINE_RTE-X 55581 55922 64 + . . scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; scaffold485 WUBlastX DNA_IS4EU 828906 829094 94 - . . scaffold485 GLEAN mRNA 823477 836722 0.499894 - . ID=CGI_10024196; scaffold485 WUBlastX DNA_IS4EU 829055 829798 347 - . . scaffold485 GLEAN mRNA 823477 836722 0.499894 - . ID=CGI_10024196; scaffold485 WUBlastX DNA_IS4EU 830177 830446 58 - . . scaffold485 GLEAN mRNA 823477 836722 0.499894 - . ID=CGI_10024196; scaffold1171 WUBlastX LINE_L1-Tx1 13832 15685 351 + . . scaffold1171 GLEAN mRNA 12089 17698 0.989581 + . ID=CGI_10002857; scaffold975 WUBlastX DNA_TcMar-Tc1 41290 42291 417 - . . scaffold975 GLEAN mRNA 37716 47437 0.999743 - . ID=CGI_10013314; scaffold274 WUBlastX DNA_En-Spm 52024 53325 199 - . . scaffold274 GLEAN mRNA 47250 68838 0.971857 - . ID=CGI_10017009; scaffold274 WUBlastX DNA_En-Spm 53113 54228 302 - . . scaffold274 GLEAN mRNA 47250 68838 0.971857 - . ID=CGI_10017009; scaffold1532 WUBlastX LINE_RTE-X 410802 412193 431 - . . scaffold1532 GLEAN mRNA 405806 428910 0.729212 + . ID=CGI_10028250; scaffold38026 WUBlastX LTR_Gypsy 25289 25465 103 + . . scaffold38026 GLEAN mRNA 24330 29871 1 - . ID=CGI_10002428; scaffold393 WUBlastX LINE_RTE-X 1040170 1040412 85 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold247 WUBlastX LINE_L1-Tx1 330438 331217 262 - . . scaffold247 GLEAN mRNA 324544 333278 0.675637 - . ID=CGI_10018594; scaffold41816 WUBlastX LINE_RTE-X 85953 86408 185 - . . scaffold41816 GLEAN mRNA 84334 89370 0.999542 + . ID=CGI_10005649; scaffold39900 WUBlastX DNA_Maverick 65377 65436 31 + . . scaffold39900 GLEAN mRNA 63800 72994 0.885101 + . ID=CGI_10003685; scaffold43150 WUBlastX LINE_RTE-X 108801 109400 135 + . . scaffold43150 GLEAN mRNA 101388 111532 0.998791 - . ID=CGI_10009032; scaffold1750 WUBlastX LTR_Pao 633565 633705 29 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold683 WUBlastX LINE_RTE-X 85741 85854 83 - . . scaffold683 GLEAN mRNA 80657 98109 0.999674 + . ID=CGI_10010356; scaffold1873 WUBlastX DNA_Helitron 58839 58892 20 - . . scaffold1873 GLEAN mRNA 42995 66497 0.656652 + . ID=CGI_10009291; scaffold1119 WUBlastX LINE_CR1 141568 142482 746 - . . scaffold1119 GLEAN mRNA 133915 143385 0.654676 + . ID=CGI_10009604; scaffold1119 WUBlastX LINE_CR1 141568 142482 746 - . . scaffold1119 GLEAN mRNA 141381 182559 0.993006 - . ID=CGI_10009605; scaffold257 WUBlastX LTR_Gypsy 1097629 1097850 53 - . . scaffold257 GLEAN mRNA 1093944 1099430 0.999918 - . ID=CGI_10027941; scaffold41372 WUBlastX LINE_L1-Tx1 70147 70245 36 - . . scaffold41372 GLEAN mRNA 67893 79286 0.261998 + . ID=CGI_10005012; scaffold513 WUBlastX LTR_Pao 10884 11360 182 + . . scaffold513 GLEAN mRNA 2113 39536 0.917684 + . ID=CGI_10022134; scaffold1806 WUBlastX LTR_Gypsy 86256 87182 201 - . . scaffold1806 GLEAN mRNA 70668 89122 0.54485 - . ID=CGI_10006158; scaffold35438 WUBlastX LINE_L1-Tx1 9886 10398 62 - . . scaffold35438 GLEAN mRNA 3327 22372 0.999028 - . ID=CGI_10001514; scaffold38374 WUBlastX LTR_Gypsy 14130 14639 64 + . . scaffold38374 GLEAN mRNA 8302 17987 0.957619 + . ID=CGI_10002746; scaffold38374 WUBlastX LTR_Gypsy 15058 16221 453 + . . scaffold38374 GLEAN mRNA 8302 17987 0.957619 + . ID=CGI_10002746; scaffold22 WUBlastX LTR_Gypsy 934158 934478 31 - . . scaffold22 GLEAN mRNA 924261 941065 0.999814 - . ID=CGI_10028884; scaffold501 WUBlastX LTR_Gypsy-Cigr 724428 726179 868 + . . scaffold501 GLEAN mRNA 690007 761178 0.748134 - . ID=CGI_10027530; scaffold1228 WUBlastX LINE_CR1-L2 475870 476808 410 - . . scaffold1228 GLEAN mRNA 466655 478477 0.528865 - . ID=CGI_10017006; scaffold1228 WUBlastX LINE_CR1-L2 476933 476995 31 - . . scaffold1228 GLEAN mRNA 466655 478477 0.528865 - . ID=CGI_10017006; scaffold672 WUBlastX DNA_MuDR 130455 132092 665 + . . scaffold672 GLEAN mRNA 126321 133472 0.990434 + . ID=CGI_10021024; scaffold1838 WUBlastX LINE_RTE-X 335846 336583 324 - . . scaffold1838 GLEAN mRNA 332958 349598 0.563165 + . ID=CGI_10014264; scaffold1021 WUBlastX LINE_CR1 697145 697315 20 + . . scaffold1021 GLEAN mRNA 692304 699453 0.992587 + . ID=CGI_10022506; scaffold385 WUBlastX LINE_CR1 138566 138745 34 + . . scaffold385 GLEAN mRNA 126563 138970 0.944104 - . ID=CGI_10011596; scaffold1473 WUBlastX LINE_L2 17176 17586 37 - . . scaffold1473 GLEAN mRNA 13162 33966 0.99911 + . ID=CGI_10003509; scaffold1733 WUBlastX LINE_CR1-L2 164622 164837 41 + . . scaffold1733 GLEAN mRNA 156260 181153 0.701996 + . ID=CGI_10009488; scaffold784 WUBlastX LINE_L2 850158 850667 35 + . . scaffold784 GLEAN mRNA 848886 854519 0.990187 - . ID=CGI_10024446; scaffold1214 WUBlastX LINE_L2 243224 243550 28 + . . scaffold1214 GLEAN mRNA 241265 253884 0.274712 + . ID=CGI_10015480; scaffold934 WUBlastX LTR_DIRS 264057 264536 60 + . . scaffold934 GLEAN mRNA 262254 282098 1 - . ID=CGI_10015446; scaffold204 WUBlastX LTR_Ngaro 299963 300190 63 + . . scaffold204 GLEAN mRNA 270844 308042 0.270192 - . ID=CGI_10026102; scaffold541 WUBlastX LTR_Gypsy 62329 62538 84 + . . scaffold541 GLEAN mRNA 50245 65351 0.650911 - . ID=CGI_10022375; scaffold12 WUBlastX LTR_Gypsy 351628 351786 31 + . . scaffold12 GLEAN mRNA 326477 354530 0.999321 + . ID=CGI_10018042; scaffold1345 WUBlastX LTR_Gypsy 241565 241699 23 - . . scaffold1345 GLEAN mRNA 239892 251479 1 - . ID=CGI_10016283; scaffold41242 WUBlastX LTR_Gypsy 29411 29434 83 + . . scaffold41242 GLEAN mRNA 28835 29434 0.478775 + . ID=CGI_10004880; scaffold41242 WUBlastX LTR_Gypsy 29519 29998 83 + . . scaffold41242 GLEAN mRNA 29519 30064 0.480836 + . ID=CGI_10004881; scaffold78 WUBlastX LTR_Gypsy 38878 38982 28 + . . scaffold78 GLEAN mRNA 33688 45299 0.504298 + . ID=CGI_10006914; scaffold911 WUBlastX LTR_Gypsy 96982 97110 101 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold38058 WUBlastX LTR_Gypsy 4986 5513 59 - . . scaffold38058 GLEAN mRNA 3486 8173 0.999159 - . ID=CGI_10002595; scaffold773 WUBlastX DNA_hAT-Tip100 195324 195488 25 + . . scaffold773 GLEAN mRNA 191166 196246 0.998027 + . ID=CGI_10011345; C27100 WUBlastX DNA_IS4EU 2374 2553 61 + . . C27100 GLEAN mRNA 2374 3198 0.994137 + . ID=CGI_10000343; scaffold1772 WUBlastX DNA_IS4EU 16220 16363 21 - . . scaffold1772 GLEAN mRNA 15531 17685 0.648545 - . ID=CGI_10014804; scaffold987 WUBlastX LINE_L1-Tx1 76361 76501 55 - . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold695 WUBlastX LINE_L1 97992 98477 66 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold223 WUBlastX DNA_Kolobok-Hyd 2385 2657 21 - . . scaffold223 GLEAN mRNA 942 7795 0.487602 - . ID=CGI_10012904; scaffold733 WUBlastX LINE_Penelope 471642 472079 30 + . . scaffold733 GLEAN mRNA 408619 548638 0.684241 + . ID=CGI_10025876; scaffold43242 WUBlastX DNA_TcMar-Fot1 154963 155022 28 + . . scaffold43242 GLEAN mRNA 154565 157582 0.118333 + . ID=CGI_10009546; scaffold247 WUBlastX LINE_RTE-BovB 204630 204800 37 - . . scaffold247 GLEAN mRNA 197989 208519 0.419557 + . ID=CGI_10018593; scaffold41380 WUBlastX LINE_RTE-BovB 67190 67609 32 - . . scaffold41380 GLEAN mRNA 65148 69310 0.636303 + . ID=CGI_10005041; scaffold1750 WUBlastX DNA_Harbinger 681366 681491 43 + . . scaffold1750 GLEAN mRNA 679453 687752 0.873959 - . ID=CGI_10021501; scaffold698 WUBlastX LINE_RTE-X 51247 51423 67 - . . scaffold698 GLEAN mRNA 47494 76860 0.800424 + . ID=CGI_10020726; scaffold1024 WUBlastX DNA_TcMar-Tc1 1079920 1080114 30 - . . scaffold1024 GLEAN mRNA 1078261 1083838 0.826098 - . ID=CGI_10028565; scaffold681 WUBlastX LINE_L2 35132 35443 75 + . . scaffold681 GLEAN mRNA 27385 42751 0.999855 + . ID=CGI_10014717; scaffold204 WUBlastX LINE_CR1-L2 399826 400074 47 + . . scaffold204 GLEAN mRNA 394042 414406 0.339936 + . ID=CGI_10026106; scaffold419 WUBlastX DNA_hAT-Tip100 894899 895255 56 + . . scaffold419 GLEAN mRNA 894890 897714 0.983071 + . ID=CGI_10028373; scaffold733 WUBlastX LINE_L1 891211 891777 74 - . . scaffold733 GLEAN mRNA 864535 893177 0.998838 + . ID=CGI_10025893; scaffold1255 WUBlastX LTR_Copia 397143 397232 20 + . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold833 WUBlastX LTR_Gypsy 368537 368794 24 - . . scaffold833 GLEAN mRNA 336322 390734 0.191045 + . ID=CGI_10016744; scaffold591 WUBlastX LTR_Gypsy 102080 102166 48 - . . scaffold591 GLEAN mRNA 101702 102166 0.996819 - . ID=CGI_10027554; scaffold591 WUBlastX LTR_Gypsy 102447 102481 48 - . . scaffold591 GLEAN mRNA 102447 114989 0.352187 + . ID=CGI_10027555; scaffold1132 WUBlastX LTR_Gypsy 720247 720516 81 - . . scaffold1132 GLEAN mRNA 715893 721077 0.813716 - . ID=CGI_10023330; scaffold42836 WUBlastX LTR_Gypsy 111934 111987 28 + . . scaffold42836 GLEAN mRNA 101715 122664 0.986039 + . ID=CGI_10007860; scaffold619 WUBlastX LTR_Ngaro 481715 482002 56 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold917 WUBlastX DNA_Crypton 151372 151818 49 - . . scaffold917 GLEAN mRNA 150992 179733 0.207364 - . ID=CGI_10011084; scaffold43648 WUBlastX DNA_Crypton 97686 98132 49 + . . scaffold43648 GLEAN mRNA 97566 98484 0.502547 + . ID=CGI_10011584; scaffold594 WUBlastX DNA_Crypton 228948 229394 49 + . . scaffold594 GLEAN mRNA 228261 229439 0.291493 + . ID=CGI_10016380; scaffold1861 WUBlastX DNA_Crypton 40283 40729 49 + . . scaffold1861 GLEAN mRNA 33431 44819 0.661012 + . ID=CGI_10004669; scaffold601 WUBlastX LTR_Ngaro 581636 581824 35 + . . scaffold601 GLEAN mRNA 573889 582293 1 - . ID=CGI_10026837; scaffold626 WUBlastX DNA_Harbinger 141022 141138 40 - . . scaffold626 GLEAN mRNA 111038 155634 0.745946 - . ID=CGI_10019981; scaffold308 WUBlastX DNA_TcMar-Fot1 250418 250642 50 - . . scaffold308 GLEAN mRNA 250418 250642 0.999372 + . ID=CGI_10011014; scaffold487 WUBlastX DNA_P 439977 440111 21 - . . scaffold487 GLEAN mRNA 428341 441144 1 + . ID=CGI_10017053; scaffold487 WUBlastX DNA_P 439996 440111 21 - . . scaffold487 GLEAN mRNA 439996 447135 0.39713 - . ID=CGI_10017054; scaffold487 WUBlastX DNA_P 440360 440506 71 - . . scaffold487 GLEAN mRNA 428341 441144 1 + . ID=CGI_10017053; scaffold487 WUBlastX DNA_P 440360 440506 71 - . . scaffold487 GLEAN mRNA 439996 447135 0.39713 - . ID=CGI_10017054; scaffold3 WUBlastX LINE_RTE-X 143472 143678 40 - . . scaffold3 GLEAN mRNA 140543 146890 0.72249 + . ID=CGI_10027280; scaffold445 WUBlastX LINE_RTE-X 173372 173611 57 - . . scaffold445 GLEAN mRNA 165031 179035 0.981925 - . ID=CGI_10019432; scaffold445 WUBlastX LINE_RTE-X 173372 173611 57 - . . scaffold445 GLEAN mRNA 157494 175078 0.500104 + . ID=CGI_10019431; scaffold1532 WUBlastX DNA_PiggyBac 608872 608943 25 - . . scaffold1532 GLEAN mRNA 606606 610636 0.502786 - . ID=CGI_10028261; scaffold794 WUBlastX DNA_TcMar-Fot1 271651 271869 86 - . . scaffold794 GLEAN mRNA 271227 282643 0.491343 - . ID=CGI_10017153; scaffold128 WUBlastX LINE_Penelope 93295 93429 44 - . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; scaffold1397 WUBlastX DNA_Sola 135871 136386 31 + . . scaffold1397 GLEAN mRNA 135079 136782 0.995825 + . ID=CGI_10017117; scaffold1816 WUBlastX DNA_TcMar-Tc1 19422 19733 78 + . . scaffold1816 GLEAN mRNA 19422 19805 0.999372 + . ID=CGI_10014391; scaffold459 WUBlastX DNA_TcMar-Marin 137484 137654 33 - . . scaffold459 GLEAN mRNA 130507 139915 0.650578 - . ID=CGI_10018170; scaffold402 WUBlastX LINE_L1-Tx1 517505 517657 45 + . . scaffold402 GLEAN mRNA 514262 530560 0.999749 + . ID=CGI_10019333; scaffold38466 WUBlastX DNA_Zator 16442 16645 66 - . . scaffold38466 GLEAN mRNA 5015 30508 0.999027 + . ID=CGI_10002798; scaffold38466 WUBlastX DNA_Zator 16782 16874 25 - . . scaffold38466 GLEAN mRNA 5015 30508 0.999027 + . ID=CGI_10002798; scaffold37880 WUBlastX DNA_TcMar-Ant1 13487 13858 102 + . . scaffold37880 GLEAN mRNA 2966 17075 0.52423 - . ID=CGI_10002532; scaffold63 WUBlastX DNA_En-Spm 415930 416049 49 + . . scaffold63 GLEAN mRNA 406163 425324 1 - . ID=CGI_10017281; scaffold432 WUBlastX DNA_Crypton 728706 729104 43 - . . scaffold432 GLEAN mRNA 728697 733393 0.995435 - . ID=CGI_10023120; scaffold36190 WUBlastX DNA_Crypton 20135 20329 68 - . . scaffold36190 GLEAN mRNA 19967 20329 1 + . ID=CGI_10001811; scaffold40556 WUBlastX LTR_Ngaro 11214 11372 79 - . . scaffold40556 GLEAN mRNA 9810 16493 0.715629 - . ID=CGI_10004250; scaffold794 WUBlastX LTR_Gypsy 281467 281667 26 + . . scaffold794 GLEAN mRNA 271227 282643 0.491343 - . ID=CGI_10017153; scaffold382 WUBlastX RC_Helitron 48171 48254 25 - . . scaffold382 GLEAN mRNA 40511 73048 0.0752347 + . ID=CGI_10004503; scaffold382 WUBlastX RC_Helitron 48304 48549 27 - . . scaffold382 GLEAN mRNA 40511 73048 0.0752347 + . ID=CGI_10004503; scaffold481 WUBlastX DNA_IS4EU 1222923 1223102 76 + . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold599 WUBlastX LINE_L1-Tx1 316787 317248 37 + . . scaffold599 GLEAN mRNA 290478 340724 0.424971 - . ID=CGI_10021714; scaffold43686 WUBlastX LINE_L1 15381 15428 21 - . . scaffold43686 GLEAN mRNA 15165 50110 0.498897 + . ID=CGI_10011753; scaffold485 WUBlastX LINE_L1 289292 290146 24 + . . scaffold485 GLEAN mRNA 284170 290152 0.883286 + . ID=CGI_10024155; scaffold43272 WUBlastX DNA_Kolobok 115214 115474 75 - . . scaffold43272 GLEAN mRNA 115202 130908 0.999617 - . ID=CGI_10009669; scaffold3 WUBlastX LINE_L1-Tx1 805736 805894 23 + . . scaffold3 GLEAN mRNA 805376 811617 0.747251 + . ID=CGI_10027304; scaffold43954 WUBlastX DNA_TcMar-Tc1 190259 190888 47 - . . scaffold43954 GLEAN mRNA 188330 194166 0.997744 + . ID=CGI_10014580; scaffold90 WUBlastX DNA_Maverick 137427 137882 39 + . . scaffold90 GLEAN mRNA 135730 142790 0.547035 + . ID=CGI_10015161; scaffold780 WUBlastX LINE_RTE-X 229556 229837 41 + . . scaffold780 GLEAN mRNA 205875 237446 0.523885 + . ID=CGI_10024723; scaffold780 WUBlastX LINE_RTE-X 232324 232605 41 + . . scaffold780 GLEAN mRNA 205875 237446 0.523885 + . ID=CGI_10024723; scaffold622 WUBlastX LINE_RTE-X 394376 394555 101 + . . scaffold622 GLEAN mRNA 388877 398399 0.998365 + . ID=CGI_10018214; scaffold40182 WUBlastX LINE_RTE-X 19805 19942 67 + . . scaffold40182 GLEAN mRNA 7136 27863 0.492081 + . ID=CGI_10003936; scaffold1488 WUBlastX LINE_RTE-X 96273 96482 53 + . . scaffold1488 GLEAN mRNA 90513 121461 0.719592 + . ID=CGI_10005179; scaffold203 WUBlastX DNA_Sola 11909 12502 57 - . . scaffold203 GLEAN mRNA 11885 13015 0.999039 - . ID=CGI_10021061; scaffold1337 WUBlastX LINE_RTE-X 135831 136022 51 + . . scaffold1337 GLEAN mRNA 120062 142795 0.333189 + . ID=CGI_10012833; scaffold894 WUBlastX LINE_L1-Tx1 183566 184030 35 + . . scaffold894 GLEAN mRNA 171936 185580 0.999624 + . ID=CGI_10008548; scaffold493 WUBlastX LINE_L1-Tx1 158591 158965 46 + . . scaffold493 GLEAN mRNA 158443 165350 0.999991 + . ID=CGI_10007250; scaffold42570 WUBlastX LINE_CR1 16578 17018 39 + . . scaffold42570 GLEAN mRNA 8098 32477 0.949085 + . ID=CGI_10007233; scaffold1018 WUBlastX DNA_hAT-Tip100 443833 444126 83 + . . scaffold1018 GLEAN mRNA 435304 447286 0.992449 + . ID=CGI_10019772; scaffold955 WUBlastX LINE_RTE-BovB 120026 120406 68 - . . scaffold955 GLEAN mRNA 102883 129964 0.99714 + . ID=CGI_10009853; scaffold1879 WUBlastX LTR_Gypsy 18987 19676 81 + . . scaffold1879 GLEAN mRNA 17088 26742 0.327022 + . ID=CGI_10007952; scaffold461 WUBlastX LINE_L2 293085 293603 65 - . . scaffold461 GLEAN mRNA 287176 297048 0.67711 - . ID=CGI_10020108; scaffold1616 WUBlastX LINE_L2 70024 70686 49 - . . scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; scaffold41344 WUBlastX LINE_L2 113169 113597 83 - . . scaffold41344 GLEAN mRNA 105897 115468 0.999612 + . ID=CGI_10004984; scaffold413 WUBlastX DNA_MuDR 489637 490002 97 - . . scaffold413 GLEAN mRNA 489088 490056 0.995102 - . ID=CGI_10022805; scaffold1199 WUBlastX DNA_Kolobok 48449 49108 67 - . . scaffold1199 GLEAN mRNA 46410 49371 0.592263 - . ID=CGI_10005923; scaffold1680 WUBlastX LTR_Copia 74304 74582 20 + . . scaffold1680 GLEAN mRNA 60137 87573 0.648461 - . ID=CGI_10004140; scaffold43964 WUBlastX DNA_hAT 130672 130923 115 + . . scaffold43964 GLEAN mRNA 129296 131440 1 + . ID=CGI_10014642; scaffold461 WUBlastX LTR_Pao 515285 515593 135 + . . scaffold461 GLEAN mRNA 510838 522193 0.712865 + . ID=CGI_10020118; scaffold998 WUBlastX LINE_L2 123552 123821 62 + . . scaffold998 GLEAN mRNA 116508 131912 0.996071 - . ID=CGI_10006465; scaffold58 WUBlastX LINE_L2 772887 773156 62 + . . scaffold58 GLEAN mRNA 754646 777437 0.99883 + . ID=CGI_10023163; scaffold1743 WUBlastX LTR_Ngaro 151600 151998 110 - . . scaffold1743 GLEAN mRNA 140905 152865 0.926405 - . ID=CGI_10011655; scaffold172 WUBlastX LTR_Gypsy 15657 15980 51 + . . scaffold172 GLEAN mRNA 5002 17897 0.999274 - . ID=CGI_10013508; scaffold610 WUBlastX LTR_Gypsy 583437 583982 52 - . . scaffold610 GLEAN mRNA 570530 599736 0.974441 - . ID=CGI_10021131; scaffold678 WUBlastX LTR_Gypsy 815672 815842 114 + . . scaffold678 GLEAN mRNA 797592 830433 0.957761 + . ID=CGI_10026382; scaffold1024 WUBlastX DNA_IS4EU 1724061 1724393 116 + . . scaffold1024 GLEAN mRNA 1693215 1725420 0.440752 - . ID=CGI_10028584; scaffold1053 WUBlastX LINE_RTE-X 328725 328949 48 + . . scaffold1053 GLEAN mRNA 299038 331134 0.830467 - . ID=CGI_10014298; scaffold165 WUBlastX LINE_L1 305122 305772 42 - . . scaffold165 GLEAN mRNA 293161 307887 0.249814 - . ID=CGI_10015330; scaffold1826 WUBlastX LTR_Gypsy-Cigr 40951 41145 91 + . . scaffold1826 GLEAN mRNA 39665 57424 0.756838 + . ID=CGI_10006241; scaffold610 WUBlastX DNA_Kolobok-IS4 105261 105521 56 - . . scaffold610 GLEAN mRNA 101538 106463 0.827114 + . ID=CGI_10021088; scaffold610 WUBlastX DNA_Kolobok-IS4 106122 106217 26 - . . scaffold610 GLEAN mRNA 101538 106463 0.827114 + . ID=CGI_10021088; scaffold610 WUBlastX DNA_Kolobok-IS4 106610 106813 24 - . . scaffold610 GLEAN mRNA 106328 109060 0.984177 - . ID=CGI_10021089; scaffold461 WUBlastX DNA_Harbinger 308229 308372 72 - . . scaffold461 GLEAN mRNA 305250 311818 1 - . ID=CGI_10020109; scaffold461 WUBlastX DNA_Harbinger 309046 309222 27 - . . scaffold461 GLEAN mRNA 305250 311818 1 - . ID=CGI_10020109; scaffold33980 WUBlastX DNA_hAT-Tip100 2800 3525 20 + . . scaffold33980 GLEAN mRNA 2151 15835 0.664854 + . ID=CGI_10001168; scaffold192 WUBlastX LTR_Gypsy 663920 664060 33 + . . scaffold192 GLEAN mRNA 655198 676504 0.999922 - . ID=CGI_10023723; scaffold544 WUBlastX LINE_RTE-BovB 288765 288929 130 - . . scaffold544 GLEAN mRNA 248926 297755 0.519606 - . ID=CGI_10022553; scaffold82 WUBlastX LINE_I-Nimb 185131 185829 80 - . . scaffold82 GLEAN mRNA 181182 187437 1 + . ID=CGI_10025244; scaffold288 WUBlastX LINE_L1-Tx1 210776 211132 102 - . . scaffold288 GLEAN mRNA 165543 215886 0.392804 - . ID=CGI_10020660; scaffold1259 WUBlastX LINE_L1 19306 19518 133 - . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold713 WUBlastX LINE_RTE-X 452460 452756 72 + . . scaffold713 GLEAN mRNA 450558 455939 1 - . ID=CGI_10017762; scaffold1462 WUBlastX LINE_L2 159567 159752 104 - . . scaffold1462 GLEAN mRNA 126068 169270 0.382353 + . ID=CGI_10014372; scaffold867 WUBlastX LINE_L1-Tx1 3595 3978 84 + . . scaffold867 GLEAN mRNA 3265 13655 0.999351 + . ID=CGI_10026210; scaffold1399 WUBlastX LINE_L1-Tx1 33517 33738 25 - . . scaffold1399 GLEAN mRNA 16276 39140 0.996608 + . ID=CGI_10007047; scaffold43868 WUBlastX DNA_hAT 16847 17023 150 + . . scaffold43868 GLEAN mRNA 12276 17376 0.993028 - . ID=CGI_10013648; scaffold43868 WUBlastX DNA_hAT 16847 17023 150 + . . scaffold43868 GLEAN mRNA 14140 17333 1 + . ID=CGI_10013649; scaffold43868 WUBlastX DNA_hAT 14158 14343 121 + . . scaffold43868 GLEAN mRNA 12276 17376 0.993028 - . ID=CGI_10013648; scaffold43868 WUBlastX DNA_hAT 14158 14343 121 + . . scaffold43868 GLEAN mRNA 14140 17333 1 + . ID=CGI_10013649; scaffold40836 WUBlastX LINE_L2 87328 87537 33 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold336 WUBlastX LINE_CR1 216957 217439 44 - . . scaffold336 GLEAN mRNA 208327 217851 1 - . ID=CGI_10012569; scaffold1866 WUBlastX LINE_L2 222865 223134 52 + . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold40828 WUBlastX LTR_Gypsy 56938 57057 66 - . . scaffold40828 GLEAN mRNA 28348 61048 0.605765 + . ID=CGI_10004502; scaffold1816 WUBlastX DNA_Kolobok 209159 209353 86 + . . scaffold1816 GLEAN mRNA 205470 210228 0.819371 + . ID=CGI_10014402; scaffold986 WUBlastX LINE_Proto2 233195 234226 99 - . . scaffold986 GLEAN mRNA 229802 234961 0.889891 - . ID=CGI_10009965; scaffold1053 WUBlastX LINE_RTE-X 328934 329065 68 + . . scaffold1053 GLEAN mRNA 299038 331134 0.830467 - . ID=CGI_10014298; scaffold1427 WUBlastX LTR_Gypsy 84956 85282 96 + . . scaffold1427 GLEAN mRNA 83286 88793 0.375742 + . ID=CGI_10005230; scaffold38974 WUBlastX DNA_Kolobok 20566 20655 61 - . . scaffold38974 GLEAN mRNA 18623 32076 0.703347 + . ID=CGI_10003119; scaffold698 WUBlastX LINE_L1-Tx1 216571 217209 92 - . . scaffold698 GLEAN mRNA 215942 226142 0.793097 + . ID=CGI_10020736; scaffold1882 WUBlastX LTR_Pao 18201 18527 26 + . . scaffold1882 GLEAN mRNA 8742 29941 0.650712 + . ID=CGI_10010492; scaffold719 WUBlastX LTR_Pao 352488 352724 152 + . . scaffold719 GLEAN mRNA 352016 396683 0.96406 + . ID=CGI_10016008; scaffold143 WUBlastX LINE_L2 194480 195148 117 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold41598 WUBlastX DNA_PiggyBac 66159 66365 123 - . . scaffold41598 GLEAN mRNA 59426 74794 0.449575 - . ID=CGI_10005304; scaffold290 WUBlastX LINE_RTE-X 185313 185663 28 + . . scaffold290 GLEAN mRNA 184166 208505 0.688957 - . ID=CGI_10018539; scaffold40606 WUBlastX LINE_RTE-X 9324 9680 55 - . . scaffold40606 GLEAN mRNA 7541 35661 0.834284 + . ID=CGI_10004278; scaffold77 WUBlastX LINE_RTE-BovB 1596953 1597213 162 + . . scaffold77 GLEAN mRNA 1579803 1600588 1 - . ID=CGI_10028048; scaffold1024 WUBlastX LTR_Gypsy 677793 677915 20 - . . scaffold1024 GLEAN mRNA 661256 689203 0.701647 - . ID=CGI_10028542; scaffold406 WUBlastX LTR_Gypsy 69609 69980 155 - . . scaffold406 GLEAN mRNA 63105 78647 0.760341 - . ID=CGI_10023839; scaffold1154 WUBlastX DNA_IS4EU 1080378 1080596 142 - . . scaffold1154 GLEAN mRNA 1080378 1140871 0.124336 - . ID=CGI_10026207; scaffold579 WUBlastX LINE_RTE-BovB 267248 267583 26 + . . scaffold579 GLEAN mRNA 263302 283849 0.988891 + . ID=CGI_10011268; scaffold61 WUBlastX DNA_Sola 191151 191297 70 + . . scaffold61 GLEAN mRNA 189931 192038 1 + . ID=CGI_10016347; scaffold61 WUBlastX DNA_Sola 191547 191753 43 + . . scaffold61 GLEAN mRNA 189931 192038 1 + . ID=CGI_10016347; scaffold1362 WUBlastX LTR_Gypsy 198881 202513 425 + . . scaffold1362 GLEAN mRNA 196782 238172 0.653945 - . ID=CGI_10023934; scaffold1525 WUBlastX LTR_Ngaro 355480 357045 932 + . . scaffold1525 GLEAN mRNA 345189 363927 0.815102 - . ID=CGI_10013870; scaffold34106 WUBlastX LTR_DIRS 11015 11173 38 + . . scaffold34106 GLEAN mRNA 1207 14937 0.504518 - . ID=CGI_10001211; scaffold274 WUBlastX LTR_Gypsy 120699 121142 284 - . . scaffold274 GLEAN mRNA 114872 127603 0.900499 - . ID=CGI_10017014; scaffold274 WUBlastX LTR_Gypsy 120699 121142 284 - . . scaffold274 GLEAN mRNA 110645 138083 0.999675 + . ID=CGI_10017013; scaffold274 WUBlastX LTR_Gypsy 121484 122536 546 - . . scaffold274 GLEAN mRNA 114872 127603 0.900499 - . ID=CGI_10017014; scaffold274 WUBlastX LTR_Gypsy 121484 122536 546 - . . scaffold274 GLEAN mRNA 110645 138083 0.999675 + . ID=CGI_10017013; scaffold583 WUBlastX LINE_L2 441747 442409 123 - . . scaffold583 GLEAN mRNA 412825 450410 0.995957 - . ID=CGI_10023625; scaffold1036 WUBlastX DNA_Harbinger 598621 598761 58 + . . scaffold1036 GLEAN mRNA 594409 600469 0.995654 - . ID=CGI_10019975; scaffold219 WUBlastX LINE_L1 131870 131938 26 + . . scaffold219 GLEAN mRNA 124764 139591 0.613723 - . ID=CGI_10016614; scaffold610 WUBlastX DNA_Merlin 572154 572672 128 + . . scaffold610 GLEAN mRNA 570530 599736 0.974441 - . ID=CGI_10021131; scaffold616 WUBlastX DNA_PiggyBac 407455 407955 117 - . . scaffold616 GLEAN mRNA 405918 425935 0.924853 - . ID=CGI_10015408; scaffold38130 WUBlastX DNA_Maverick 28155 28556 110 - . . scaffold38130 GLEAN mRNA 25137 30326 0.998369 - . ID=CGI_10002636; scaffold1698 WUBlastX LINE_RTE-X 555503 556090 67 + . . scaffold1698 GLEAN mRNA 555176 595908 0.182915 - . ID=CGI_10019393; scaffold19 WUBlastX LTR_DIRS 201080 201187 21 + . . scaffold19 GLEAN mRNA 192266 206861 0.651568 + . ID=CGI_10010840; scaffold313 WUBlastX LINE_RTE-X 1189414 1190073 36 - . . scaffold313 GLEAN mRNA 1180096 1191800 0.492755 + . ID=CGI_10026643; scaffold1213 WUBlastX DNA_TcMar-Tc1 250226 250603 127 - . . scaffold1213 GLEAN mRNA 226891 261241 0.989794 + . ID=CGI_10027441; C34546 WUBlastX DNA_Zator 7209 7655 147 - . . C34546 GLEAN mRNA 2511 14767 0.791633 - . ID=CGI_10001308; scaffold664 WUBlastX LTR_Pao 649991 651130 1107 - . . scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold1780 WUBlastX LINE_RTE-BovB 112718 112978 181 + . . scaffold1780 GLEAN mRNA 107008 115035 0.543 - . ID=CGI_10014549; scaffold53 WUBlastX LINE_RTE-X 111984 114047 851 + . . scaffold53 GLEAN mRNA 69197 125241 0.981118 + . ID=CGI_10026649; scaffold288 WUBlastX LINE_CR1-L2 39052 39126 28 - . . scaffold288 GLEAN mRNA 38387 49127 0.651135 + . ID=CGI_10020657; scaffold407 WUBlastX LINE_CR1-L2 15435 15632 29 + . . scaffold407 GLEAN mRNA 13072 17204 0.999998 + . ID=CGI_10002626; scaffold161 WUBlastX LTR_Gypsy 110303 111367 139 + . . scaffold161 GLEAN mRNA 106688 117037 0.832376 + . ID=CGI_10008589; scaffold1244 WUBlastX LTR_Gypsy 127697 127909 125 - . . scaffold1244 GLEAN mRNA 121009 134472 0.646055 + . ID=CGI_10020823; scaffold1180 WUBlastX LTR_DIRS 25797 26234 101 + . . scaffold1180 GLEAN mRNA 13672 45655 0.485788 + . ID=CGI_10005979; scaffold194 WUBlastX DNA_Harbinger 253985 254257 118 - . . scaffold194 GLEAN mRNA 249396 274108 0.709931 + . ID=CGI_10011068; scaffold194 WUBlastX DNA_Harbinger 254269 254337 65 - . . scaffold194 GLEAN mRNA 249396 274108 0.709931 + . ID=CGI_10011068; scaffold99 WUBlastX DNA_Kolobok-IS4 463126 463719 90 - . . scaffold99 GLEAN mRNA 460652 481021 0.928915 - . ID=CGI_10021208; scaffold1532 WUBlastX LTR_Ngaro 640868 641413 145 + . . scaffold1532 GLEAN mRNA 638492 642462 0.995183 + . ID=CGI_10028264; scaffold128 WUBlastX DNA_TcMar-Tc1 87149 87376 87 + . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; scaffold128 WUBlastX DNA_TcMar-Tc1 87399 87713 61 + . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; scaffold752 WUBlastX LINE_RTE-X 15788 16276 137 - . . scaffold752 GLEAN mRNA 9483 39806 0.831804 + . ID=CGI_10010038; scaffold829 WUBlastX DNA_TcMar-Pogo 592586 592807 118 - . . scaffold829 GLEAN mRNA 577056 600770 0.812815 + . ID=CGI_10021152; scaffold1480 WUBlastX LINE_R2 137670 138692 160 - . . scaffold1480 GLEAN mRNA 131830 138953 0.535981 - . ID=CGI_10008637; scaffold1476 WUBlastX LINE_RTE-X 172540 173721 54 - . . scaffold1476 GLEAN mRNA 169615 179488 0.862141 + . ID=CGI_10009826; scaffold1736 WUBlastX LINE_RTE-X 627538 627669 46 - . . scaffold1736 GLEAN mRNA 617815 628143 0.537791 - . ID=CGI_10020987; scaffold695 WUBlastX DNA_Sola 681463 681798 176 + . . scaffold695 GLEAN mRNA 679649 687382 0.99962 - . ID=CGI_10023301; scaffold337 WUBlastX LTR_Pao 1484005 1484427 92 + . . scaffold337 GLEAN mRNA 1483591 1485192 0.740205 + . ID=CGI_10028120; scaffold337 WUBlastX LTR_Pao 1484005 1484427 92 + . . scaffold337 GLEAN mRNA 1471928 1488134 0.608962 - . ID=CGI_10028119; scaffold43036 WUBlastX DNA_hAT-hAT5 149188 149373 38 + . . scaffold43036 GLEAN mRNA 148188 171820 0.999804 + . ID=CGI_10008498; scaffold578 WUBlastX LINE_RTE-X 357035 357307 146 + . . scaffold578 GLEAN mRNA 348664 361929 0.458006 + . ID=CGI_10015130; scaffold1097 WUBlastX LINE_RTE-X 796801 797208 20 + . . scaffold1097 GLEAN mRNA 796138 800546 1 + . ID=CGI_10024550; scaffold41358 WUBlastX DNA_TcMar-Tc1 110896 111117 154 + . . scaffold41358 GLEAN mRNA 104455 115098 0.650923 - . ID=CGI_10004976; scaffold632 WUBlastX LINE_RTE-X 271859 274405 843 + . . scaffold632 GLEAN mRNA 271859 278767 0.999129 + . ID=CGI_10018450; scaffold1186 WUBlastX LTR_Pao 200177 200539 46 + . . scaffold1186 GLEAN mRNA 187396 222353 0.578632 + . ID=CGI_10010597; scaffold1186 WUBlastX LTR_Pao 200612 202279 968 + . . scaffold1186 GLEAN mRNA 187396 222353 0.578632 + . ID=CGI_10010597; scaffold36450 WUBlastX RC_Helitron 4220 4444 52 + . . scaffold36450 GLEAN mRNA 3992 12302 0.990019 + . ID=CGI_10001979; scaffold36450 WUBlastX RC_Helitron 5928 6956 342 + . . scaffold36450 GLEAN mRNA 3992 12302 0.990019 + . ID=CGI_10001979; scaffold36450 WUBlastX RC_Helitron 8282 9427 505 + . . scaffold36450 GLEAN mRNA 3992 12302 0.990019 + . ID=CGI_10001979; scaffold42274 WUBlastX DNA_hAT 10319 10537 121 - . . scaffold42274 GLEAN mRNA 8593 13901 0.722974 - . ID=CGI_10006509; scaffold1525 WUBlastX DNA_En-Spm 282633 282938 163 - . . scaffold1525 GLEAN mRNA 276942 293191 0.993853 - . ID=CGI_10013865; scaffold1188 WUBlastX LTR_Gypsy 207150 207197 21 - . . scaffold1188 GLEAN mRNA 201691 209926 0.974251 - . ID=CGI_10025462; scaffold39268 WUBlastX DNA_Harbinger 40633 40989 204 + . . scaffold39268 GLEAN mRNA 37983 58849 0.736622 - . ID=CGI_10003275; scaffold1189 WUBlastX LINE_L1 636263 636313 21 - . . scaffold1189 GLEAN mRNA 632624 639695 1 - . ID=CGI_10023828; scaffold1584 WUBlastX LINE_RTE-X 92034 92390 133 + . . scaffold1584 GLEAN mRNA 73868 96669 0.999351 - . ID=CGI_10015073; scaffold406 WUBlastX LTR_Gypsy-Cigr 134423 135502 508 + . . scaffold406 GLEAN mRNA 128241 151323 0.854188 - . ID=CGI_10023840; scaffold1062 WUBlastX LINE_CR1-L2 9098 9613 31 + . . scaffold1062 GLEAN mRNA 7819 14088 0.462682 - . ID=CGI_10005737; scaffold43182 WUBlastX LTR_Gypsy-Gmr1 167949 168011 26 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold43182 WUBlastX LTR_Gypsy-Gmr1 168273 168383 26 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold1066 WUBlastX LTR_Ngaro 177511 177648 21 - . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold42096 WUBlastX DNA_Harbinger 106707 107078 196 + . . scaffold42096 GLEAN mRNA 96755 112781 0.947295 - . ID=CGI_10006165; scaffold42096 WUBlastX DNA_Harbinger 106707 107078 196 + . . scaffold42096 GLEAN mRNA 106698 118966 0.999659 + . ID=CGI_10006166; scaffold43008 WUBlastX DNA_Harbinger 11610 12017 183 - . . scaffold43008 GLEAN mRNA 2147 17942 0.982229 + . ID=CGI_10008457; scaffold1565 WUBlastX LINE_L1-Tx1 6825 7412 29 - . . scaffold1565 GLEAN mRNA 460 9199 1 + . ID=CGI_10000778; scaffold1565 WUBlastX LINE_L1-Tx1 7429 7791 92 - . . scaffold1565 GLEAN mRNA 460 9199 1 + . ID=CGI_10000778; scaffold474 WUBlastX LINE_RTE-BovB 175833 176375 81 + . . scaffold474 GLEAN mRNA 173461 184050 0.256829 - . ID=CGI_10007598; scaffold474 WUBlastX LINE_RTE-BovB 176800 176931 56 + . . scaffold474 GLEAN mRNA 173461 184050 0.256829 - . ID=CGI_10007598; scaffold1440 WUBlastX DNA_Maverick 48557 49144 175 - . . scaffold1440 GLEAN mRNA 46324 69343 0.667435 - . ID=CGI_10008354; scaffold41372 WUBlastX LINE_L1-Tx1 70626 71621 350 - . . scaffold41372 GLEAN mRNA 67893 79286 0.261998 + . ID=CGI_10005012; scaffold41372 WUBlastX LINE_L1-Tx1 72101 72505 296 - . . scaffold41372 GLEAN mRNA 67893 79286 0.261998 + . ID=CGI_10005012; scaffold41372 WUBlastX LINE_L1-Tx1 72508 72807 158 - . . scaffold41372 GLEAN mRNA 67893 79286 0.261998 + . ID=CGI_10005012; scaffold41372 WUBlastX LINE_L1-Tx1 73073 73813 279 - . . scaffold41372 GLEAN mRNA 67893 79286 0.261998 + . ID=CGI_10005012; scaffold41998 WUBlastX LINE_RTE-BovB 41658 42056 297 - . . scaffold41998 GLEAN mRNA 32389 44944 0.999949 - . ID=CGI_10005911; scaffold775 WUBlastX DNA_Merlin 128605 129036 140 + . . scaffold775 GLEAN mRNA 127511 130349 0.997009 + . ID=CGI_10006094; scaffold499 WUBlastX LTR_Ngaro 25613 25813 109 + . . scaffold499 GLEAN mRNA 22718 44589 1 + . ID=CGI_10015760; scaffold257 WUBlastX LTR_Gypsy-Cigr 1095030 1095104 25 - . . scaffold257 GLEAN mRNA 1093944 1099430 0.999918 - . ID=CGI_10027941; scaffold672 WUBlastX LINE_L2 429198 430364 1382 - . . scaffold672 GLEAN mRNA 429192 430364 0.999999 - . ID=CGI_10021041; scaffold1255 WUBlastX LTR_Gypsy-Cigr 396222 396449 144 + . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold1255 WUBlastX LTR_Gypsy-Cigr 396469 396747 86 + . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold1159 WUBlastX LINE_L2 161555 161818 91 + . . scaffold1159 GLEAN mRNA 140710 162801 0.966335 + . ID=CGI_10007977; scaffold1397 WUBlastX LTR_Ngaro 24052 24092 239 + . . scaffold1397 GLEAN mRNA 23367 24092 0.999994 + . ID=CGI_10017114; scaffold1397 WUBlastX LTR_Ngaro 24052 24351 239 + . . scaffold1397 GLEAN mRNA 22041 34038 0.684002 - . ID=CGI_10017113; C31096 WUBlastX LTR_Ngaro 6632 6700 210 - . . C31096 GLEAN mRNA 4535 6700 0.999978 - . ID=CGI_10000705; scaffold772 WUBlastX DNA_PiggyBac 282061 282405 108 + . . scaffold772 GLEAN mRNA 277746 285976 1 + . ID=CGI_10016590; scaffold419 WUBlastX LTR_Gypsy 680767 682356 728 - . . scaffold419 GLEAN mRNA 671072 685906 0.998967 - . ID=CGI_10028358; scaffold175 WUBlastX LINE_L1-Tx1 246939 247727 79 + . . scaffold175 GLEAN mRNA 242942 249112 0.999907 + . ID=CGI_10021317; scaffold655 WUBlastX LINE_CR1 318302 318880 90 - . . scaffold655 GLEAN mRNA 288551 322246 0.783926 + . ID=CGI_10014958; scaffold1836 WUBlastX LINE_CR1 126619 127179 198 + . . scaffold1836 GLEAN mRNA 121916 127717 0.992656 + . ID=CGI_10026268; scaffold1785 WUBlastX LTR_Ngaro 648723 649376 62 + . . scaffold1785 GLEAN mRNA 629152 649907 0.539712 - . ID=CGI_10024391; scaffold38026 WUBlastX LTR_Gypsy 25461 26642 151 + . . scaffold38026 GLEAN mRNA 24330 29871 1 - . ID=CGI_10002428; scaffold619 WUBlastX LINE_RTE-X 779265 779498 42 - . . scaffold619 GLEAN mRNA 775777 792970 0.999676 - . ID=CGI_10025785; scaffold630 WUBlastX LINE_RTE-X 85561 86178 77 + . . scaffold630 GLEAN mRNA 80549 90707 0.970045 - . ID=CGI_10018325; scaffold203 WUBlastX LINE_RTE-X 628185 628388 89 - . . scaffold203 GLEAN mRNA 599632 671214 0.810319 + . ID=CGI_10021081; scaffold39214 WUBlastX DNA_Academ 28747 29733 925 - . . scaffold39214 GLEAN mRNA 28615 29733 0.503937 - . ID=CGI_10003232; scaffold42904 WUBlastX LTR_DIRS? 43592 43687 35 + . . scaffold42904 GLEAN mRNA 39898 45913 0.830856 + . ID=CGI_10008098; scaffold456 WUBlastX LTR_Gypsy 141968 142741 220 + . . scaffold456 GLEAN mRNA 102025 155096 0.577611 + . ID=CGI_10006863; scaffold257 WUBlastX LINE_Penelope 311521 312660 114 - . . scaffold257 GLEAN mRNA 306483 324339 0.999073 + . ID=CGI_10027906; scaffold1149 WUBlastX LINE_RTE-X 218381 218659 53 + . . scaffold1149 GLEAN mRNA 215463 220751 0.999395 - . ID=CGI_10023460; scaffold35986 WUBlastX LTR_DIRS 13122 13367 141 - . . scaffold35986 GLEAN mRNA 7135 18106 0.651135 + . ID=CGI_10001706; scaffold35986 WUBlastX LTR_DIRS 13328 13573 68 - . . scaffold35986 GLEAN mRNA 7135 18106 0.651135 + . ID=CGI_10001706; scaffold1093 WUBlastX LINE_Penelope 404881 405039 55 - . . scaffold1093 GLEAN mRNA 404049 410721 0.987785 + . ID=CGI_10019807; scaffold36526 WUBlastX LINE_L1 21217 21417 73 - . . scaffold36526 GLEAN mRNA 10575 29087 0.999676 + . ID=CGI_10002008; scaffold676 WUBlastX LINE_RTE-X 576298 576459 64 - . . scaffold676 GLEAN mRNA 560023 599101 0.378138 + . ID=CGI_10021432; scaffold43964 WUBlastX LINE_L2 292228 292494 85 + . . scaffold43964 GLEAN mRNA 291141 295582 1 - . ID=CGI_10014655; scaffold43964 WUBlastX LINE_L2 292484 292924 120 + . . scaffold43964 GLEAN mRNA 291141 295582 1 - . ID=CGI_10014655; scaffold40794 WUBlastX DNA_IS4EU 24806 25345 242 + . . scaffold40794 GLEAN mRNA 13820 26649 0.999201 - . ID=CGI_10004495; scaffold352 WUBlastX LTR_Gypsy-Cigr 149860 151227 781 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold142 WUBlastX LINE_CR1 237398 238918 1294 + . . scaffold142 GLEAN mRNA 226750 254431 0.969071 + . ID=CGI_10026760; scaffold858 WUBlastX LINE_L2 15353 16606 167 - . . scaffold858 GLEAN mRNA 10847 22761 0.93008 - . ID=CGI_10004935; scaffold1459 WUBlastX LINE_L1-Tx1 15304 15768 193 + . . scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; scaffold1214 WUBlastX LINE_RTE-X 244235 244675 54 + . . scaffold1214 GLEAN mRNA 241265 253884 0.274712 + . ID=CGI_10015480; scaffold619 WUBlastX LTR_Ngaro 484793 485029 156 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold36790 WUBlastX LTR_Ngaro 26527 26805 129 + . . scaffold36790 GLEAN mRNA 14645 35591 0.936014 - . ID=CGI_10002141; scaffold387 WUBlastX LTR_Gypsy 33688 34419 295 - . . scaffold387 GLEAN mRNA 27360 40673 0.998991 + . ID=CGI_10004497; scaffold41568 WUBlastX DNA_Crypton 75669 76832 200 + . . scaffold41568 GLEAN mRNA 75182 91109 0.978007 + . ID=CGI_10005300; scaffold933 WUBlastX DNA_En-Spm 442066 442785 122 - . . scaffold933 GLEAN mRNA 438762 447503 0.391135 + . ID=CGI_10016727; scaffold933 WUBlastX DNA_En-Spm 442785 442904 119 - . . scaffold933 GLEAN mRNA 438762 447503 0.391135 + . ID=CGI_10016727; scaffold433 WUBlastX LINE_RTE-X 811896 812219 162 + . . scaffold433 GLEAN mRNA 810817 827461 0.351164 + . ID=CGI_10027093; scaffold406 WUBlastX LINE_L1-Tx1 750795 754559 1932 + . . scaffold406 GLEAN mRNA 750169 761201 0.587095 + . ID=CGI_10023870; scaffold1788 WUBlastX LINE_L1-Tx1 47228 47767 266 + . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold79 WUBlastX DNA_TcMar-Tc1 873281 873499 47 - . . scaffold79 GLEAN mRNA 869143 880340 0.999287 - . ID=CGI_10024652; scaffold647 WUBlastX LINE_L1-Tx1 135378 135710 32 - . . scaffold647 GLEAN mRNA 124845 138037 0.631256 + . ID=CGI_10006931; scaffold461 WUBlastX LINE_Penelope 324296 325357 195 + . . scaffold461 GLEAN mRNA 318338 325705 0.651135 - . ID=CGI_10020110; scaffold43964 WUBlastX LINE_Penelope 339249 339584 75 + . . scaffold43964 GLEAN mRNA 338636 342902 1 + . ID=CGI_10014661; scaffold1163 WUBlastX LINE_L1 188657 189190 105 + . . scaffold1163 GLEAN mRNA 183718 207332 0.990122 - . ID=CGI_10009351; scaffold22 WUBlastX LTR_Gypsy 934583 934807 53 - . . scaffold22 GLEAN mRNA 924261 941065 0.999814 - . ID=CGI_10028884; scaffold241 WUBlastX LINE_L1 124806 125078 46 - . . scaffold241 GLEAN mRNA 108603 137659 0.55536 + . ID=CGI_10025092; scaffold588 WUBlastX LINE_L1-Tx1 150920 151417 106 - . . scaffold588 GLEAN mRNA 132834 155339 0.82921 + . ID=CGI_10016211; scaffold186 WUBlastX DNA_Harbinger 23019 23354 85 + . . scaffold186 GLEAN mRNA 23019 24333 0.349537 + . ID=CGI_10012601; scaffold186 WUBlastX DNA_Harbinger 23578 23826 219 + . . scaffold186 GLEAN mRNA 23019 24333 0.349537 + . ID=CGI_10012601; scaffold42392 WUBlastX LTR_Gypsy-Cigr 148067 148840 292 - . . scaffold42392 GLEAN mRNA 146946 151067 0.782062 + . ID=CGI_10006786; scaffold1070 WUBlastX LINE_L2 95927 96769 233 - . . scaffold1070 GLEAN mRNA 87834 98509 0.499838 - . ID=CGI_10004521; scaffold1004 WUBlastX LINE_Penelope 282640 283005 85 + . . scaffold1004 GLEAN mRNA 274842 298566 0.682505 - . ID=CGI_10020767; scaffold38448 WUBlastX LTR_Ngaro 33487 34740 144 - . . scaffold38448 GLEAN mRNA 31492 37691 0.999937 + . ID=CGI_10002779; scaffold38448 WUBlastX LTR_Ngaro 34755 34985 62 - . . scaffold38448 GLEAN mRNA 31492 37691 0.999937 + . ID=CGI_10002779; scaffold150 WUBlastX LTR_Pao 440943 442571 290 + . . scaffold150 GLEAN mRNA 440940 442586 0.995484 + . ID=CGI_10028609; scaffold1237 WUBlastX LTR_DIRS 261173 261391 101 + . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold43008 WUBlastX LINE_L1 84633 84791 67 - . . scaffold43008 GLEAN mRNA 78684 87806 0.543465 - . ID=CGI_10008462; scaffold145 WUBlastX LINE_RTE-BovB 1137805 1138182 206 - . . scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold1574 WUBlastX LINE_RTE-X 456162 457511 228 - . . scaffold1574 GLEAN mRNA 452128 459537 0.999957 + . ID=CGI_10016335; scaffold1098 WUBlastX LTR_Pao 70635 70973 109 + . . scaffold1098 GLEAN mRNA 56507 72093 1 - . ID=CGI_10010795; scaffold37712 WUBlastX DNA_Harbinger 15209 15376 105 - . . scaffold37712 GLEAN mRNA 15194 37462 0.403354 - . ID=CGI_10002463; scaffold933 WUBlastX LINE_RTE-X 321701 322237 111 + . . scaffold933 GLEAN mRNA 320919 329030 0.990126 + . ID=CGI_10016722; scaffold1255 WUBlastX LTR_Gypsy 393918 394307 58 + . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold485 WUBlastX LINE_RTE-BovB 738980 739498 227 + . . scaffold485 GLEAN mRNA 737910 749557 0.981296 + . ID=CGI_10024192; scaffold485 WUBlastX LINE_RTE-BovB 738980 739498 227 + . . scaffold485 GLEAN mRNA 734638 750215 1 - . ID=CGI_10024191; scaffold39268 WUBlastX DNA_Harbinger 40167 40610 176 + . . scaffold39268 GLEAN mRNA 37983 58849 0.736622 - . ID=CGI_10003275; scaffold39268 WUBlastX DNA_Harbinger 40729 40989 232 + . . scaffold39268 GLEAN mRNA 37983 58849 0.736622 - . ID=CGI_10003275; scaffold1032 WUBlastX DNA_TcMar-Marin 551571 551957 230 - . . scaffold1032 GLEAN mRNA 545471 568883 0.969277 - . ID=CGI_10021693; scaffold1032 WUBlastX DNA_TcMar-Marin 552447 552824 136 - . . scaffold1032 GLEAN mRNA 545471 568883 0.969277 - . ID=CGI_10021693; scaffold801 WUBlastX LINE_RTE-X 273856 274179 53 - . . scaffold801 GLEAN mRNA 264907 277016 0.581073 - . ID=CGI_10024082; scaffold1098 WUBlastX LTR_Pao 71145 71708 270 + . . scaffold1098 GLEAN mRNA 56507 72093 1 - . ID=CGI_10010795; scaffold1888 WUBlastX DNA_TcMar-Pogo 51546 51641 34 + . . scaffold1888 GLEAN mRNA 49981 53887 0.998764 + . ID=CGI_10013292; scaffold1561 WUBlastX LINE_RTE-X 97671 97904 81 - . . scaffold1561 GLEAN mRNA 90687 107153 0.999946 - . ID=CGI_10005694; scaffold257 WUBlastX LTR_DIRS 425745 426668 355 - . . scaffold257 GLEAN mRNA 408517 430332 0.376756 - . ID=CGI_10027910; scaffold257 WUBlastX LTR_DIRS 425745 426668 355 - . . scaffold257 GLEAN mRNA 415447 429822 0.479397 + . ID=CGI_10027911; scaffold41898 WUBlastX DNA_Kolobok-IS4 2008 2697 385 + . . scaffold41898 GLEAN mRNA 1759 2697 1 + . ID=CGI_10005830; scaffold1016 WUBlastX LINE_L1-Tx1 306544 306672 96 + . . scaffold1016 GLEAN mRNA 305223 309571 0.991277 - . ID=CGI_10016894; scaffold1016 WUBlastX LINE_L1-Tx1 306665 307249 178 + . . scaffold1016 GLEAN mRNA 305223 309571 0.991277 - . ID=CGI_10016894; scaffold1016 WUBlastX LINE_L1-Tx1 308033 308197 39 + . . scaffold1016 GLEAN mRNA 305223 309571 0.991277 - . ID=CGI_10016894; scaffold1753 WUBlastX LINE_L1-Tx1 265571 266425 41 - . . scaffold1753 GLEAN mRNA 261922 275452 0.949513 - . ID=CGI_10010811; scaffold1753 WUBlastX LINE_L1-Tx1 266617 266784 51 - . . scaffold1753 GLEAN mRNA 261922 275452 0.949513 - . ID=CGI_10010811; scaffold1174 WUBlastX DNA_IS4EU 928914 929780 180 - . . scaffold1174 GLEAN mRNA 917037 939462 0.964473 + . ID=CGI_10026072; scaffold1174 WUBlastX DNA_IS4EU 930297 930782 203 - . . scaffold1174 GLEAN mRNA 917037 939462 0.964473 + . ID=CGI_10026072; scaffold41828 WUBlastX LINE_RTE-X 20080 21039 292 - . . scaffold41828 GLEAN mRNA 18916 30776 1 - . ID=CGI_10005672; scaffold1213 WUBlastX LINE_RTE-X 177133 178281 308 - . . scaffold1213 GLEAN mRNA 172328 179031 1 - . ID=CGI_10027439; scaffold35346 WUBlastX LTR_Gypsy 7568 8125 345 + . . scaffold35346 GLEAN mRNA 1512 13526 0.901079 - . ID=CGI_10001477; scaffold35346 WUBlastX LTR_Gypsy 8115 8270 111 + . . scaffold35346 GLEAN mRNA 1512 13526 0.901079 - . ID=CGI_10001477; scaffold42740 WUBlastX DNA_Harbinger 76121 76294 22 - . . scaffold42740 GLEAN mRNA 65305 90130 0.999494 + . ID=CGI_10007608; scaffold42740 WUBlastX DNA_Harbinger 76121 76294 22 - . . scaffold42740 GLEAN mRNA 75816 93610 0.249736 - . ID=CGI_10007609; scaffold1132 WUBlastX LINE_RTE-X 422007 423194 134 + . . scaffold1132 GLEAN mRNA 413110 426704 0.743295 - . ID=CGI_10023318; scaffold1788 WUBlastX LINE_L1-Tx1 51772 52269 88 + . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold1343 WUBlastX DNA_Maverick 99765 100601 305 + . . scaffold1343 GLEAN mRNA 94192 115140 0.999675 + . ID=CGI_10005048; scaffold1237 WUBlastX LTR_Gypsy 222452 223138 50 - . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold1877 WUBlastX LINE_RTE-X 299290 299562 55 + . . scaffold1877 GLEAN mRNA 295978 306967 1 + . ID=CGI_10011963; scaffold1018 WUBlastX DNA_En-Spm 439001 439888 296 + . . scaffold1018 GLEAN mRNA 435304 447286 0.992449 + . ID=CGI_10019772; scaffold1018 WUBlastX DNA_En-Spm 439001 439888 296 + . . scaffold1018 GLEAN mRNA 435432 442583 0.542495 - . ID=CGI_10019773; scaffold1018 WUBlastX DNA_En-Spm 439878 440300 126 + . . scaffold1018 GLEAN mRNA 435304 447286 0.992449 + . ID=CGI_10019772; scaffold1018 WUBlastX DNA_En-Spm 439878 440300 126 + . . scaffold1018 GLEAN mRNA 435432 442583 0.542495 - . ID=CGI_10019773; scaffold1036 WUBlastX DNA_Maverick 202062 202072 412 + . . scaffold1036 GLEAN mRNA 202062 206192 0.444605 - . ID=CGI_10019953; scaffold1350 WUBlastX LINE_RTE-X 397022 397750 188 - . . scaffold1350 GLEAN mRNA 393414 411683 0.728523 + . ID=CGI_10017317; scaffold39778 WUBlastX LINE_RTE-X 43460 43759 70 + . . scaffold39778 GLEAN mRNA 34210 51922 0.521329 + . ID=CGI_10003608; scaffold412 WUBlastX LINE_L1 148096 148245 44 + . . scaffold412 GLEAN mRNA 141227 160730 0.499998 - . ID=CGI_10018560; scaffold31 WUBlastX LINE_L1-Tx1 11350 12948 319 - . . scaffold31 GLEAN mRNA 7584 16133 0.792688 - . ID=CGI_10013551; scaffold43008 WUBlastX LINE_RTE-X 2896 3642 148 + . . scaffold43008 GLEAN mRNA 2147 17942 0.982229 + . ID=CGI_10008457; scaffold968 WUBlastX LINE_RTE-X 114350 115366 249 + . . scaffold968 GLEAN mRNA 110087 120737 0.425641 + . ID=CGI_10006297; scaffold1174 WUBlastX LINE_L1-Tx1 170160 170654 108 + . . scaffold1174 GLEAN mRNA 165948 193006 0.453368 - . ID=CGI_10026029; scaffold43134 WUBlastX DNA_IS4EU 213753 213926 49 - . . scaffold43134 GLEAN mRNA 205984 218530 0.990712 + . ID=CGI_10008898; scaffold43134 WUBlastX DNA_IS4EU 213753 213926 49 - . . scaffold43134 GLEAN mRNA 212178 214956 0.948909 - . ID=CGI_10008899; scaffold481 WUBlastX DNA_TcMar-m44 685266 685430 29 + . . scaffold481 GLEAN mRNA 661200 686862 0.995695 + . ID=CGI_10027232; scaffold733 WUBlastX DNA_TcMar-m44 217495 217659 29 - . . scaffold733 GLEAN mRNA 216063 223733 0.792042 - . ID=CGI_10025867; scaffold733 WUBlastX DNA_TcMar-m44 222494 222658 29 - . . scaffold733 GLEAN mRNA 216063 223733 0.792042 - . ID=CGI_10025867; scaffold162 WUBlastX LINE_RTE-X 53859 54092 132 + . . scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; scaffold767 WUBlastX LINE_CR1-L2 320503 320532 22 + . . scaffold767 GLEAN mRNA 315899 380131 0.808127 - . ID=CGI_10014850; scaffold1464 WUBlastX LTR_Gypsy 2558 2998 303 + . . scaffold1464 GLEAN mRNA 1479 25035 0.549445 + . ID=CGI_10003234; scaffold41816 WUBlastX LINE_RTE-X 87591 88391 150 - . . scaffold41816 GLEAN mRNA 84334 89370 0.999542 + . ID=CGI_10005649; scaffold456 WUBlastX LTR_Gypsy 141585 141992 152 + . . scaffold456 GLEAN mRNA 102025 155096 0.577611 + . ID=CGI_10006863; scaffold1738 WUBlastX DNA_TcMar-Tc1 103657 103773 31 - . . scaffold1738 GLEAN mRNA 101617 114566 0.999676 + . ID=CGI_10008970; scaffold579 WUBlastX LINE_RTE-BovB 267251 267442 93 + . . scaffold579 GLEAN mRNA 263302 283849 0.988891 + . ID=CGI_10011268; scaffold579 WUBlastX LINE_RTE-BovB 268333 268611 202 + . . scaffold579 GLEAN mRNA 263302 283849 0.988891 + . ID=CGI_10011268; scaffold579 WUBlastX LINE_RTE-BovB 268604 269386 186 + . . scaffold579 GLEAN mRNA 263302 283849 0.988891 + . ID=CGI_10011268; scaffold712 WUBlastX LINE_L1 153983 155566 315 - . . scaffold712 GLEAN mRNA 144650 156180 1 + . ID=CGI_10016478; scaffold1788 WUBlastX LINE_L1-Tx1 50855 51742 259 + . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold19 WUBlastX LTR_DIRS 138732 139592 143 - . . scaffold19 GLEAN mRNA 112664 148277 0.596648 - . ID=CGI_10010836; scaffold714 WUBlastX DNA_TcMar-Tc1 88003 88404 187 - . . scaffold714 GLEAN mRNA 72326 94511 0.727136 + . ID=CGI_10016640; scaffold714 WUBlastX DNA_TcMar-Tc1 88340 88702 103 - . . scaffold714 GLEAN mRNA 72326 94511 0.727136 + . ID=CGI_10016640; scaffold714 WUBlastX DNA_TcMar-Tc1 88707 88901 44 - . . scaffold714 GLEAN mRNA 72326 94511 0.727136 + . ID=CGI_10016640; scaffold1323 WUBlastX LTR_Ngaro 78091 78486 63 - . . scaffold1323 GLEAN mRNA 62759 90642 0.99865 + . ID=CGI_10009082; scaffold1738 WUBlastX DNA_TcMar-Tc1 102794 103651 394 - . . scaffold1738 GLEAN mRNA 101617 114566 0.999676 + . ID=CGI_10008970; scaffold1101 WUBlastX LINE_RTE-X 526934 527578 178 - . . scaffold1101 GLEAN mRNA 521845 536003 0.859729 + . ID=CGI_10023031; scaffold489 WUBlastX DNA_Crypton 107576 108610 594 - . . scaffold489 GLEAN mRNA 93550 113740 0.603671 - . ID=CGI_10020228; scaffold1101 WUBlastX LINE_RTE-X 526940 527434 199 - . . scaffold1101 GLEAN mRNA 521845 536003 0.859729 + . ID=CGI_10023031; scaffold1750 WUBlastX LINE_RTE-X 18560 19204 282 + . . scaffold1750 GLEAN mRNA 8946 22537 0.686268 + . ID=CGI_10021461; scaffold1262 WUBlastX DNA_IS4EU 513637 514635 541 - . . scaffold1262 GLEAN mRNA 503446 523698 0.999351 - . ID=CGI_10018956; scaffold705 WUBlastX DNA_IS4EU 406672 406959 27 - . . scaffold705 GLEAN mRNA 397843 425733 0.998279 - . ID=CGI_10015520; scaffold705 WUBlastX DNA_Kolobok-IS4 404780 405907 551 - . . scaffold705 GLEAN mRNA 397843 425733 0.998279 - . ID=CGI_10015520; scaffold705 WUBlastX DNA_Kolobok-IS4 406639 406899 46 - . . scaffold705 GLEAN mRNA 397843 425733 0.998279 - . ID=CGI_10015520; scaffold40786 WUBlastX LINE_L2 7257 8423 618 + . . scaffold40786 GLEAN mRNA 7257 8429 0.999999 + . ID=CGI_10004439; scaffold451 WUBlastX LTR_Gypsy 66730 66807 36 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold223 WUBlastX LTR_Gypsy 5146 5745 540 - . . scaffold223 GLEAN mRNA 942 7795 0.487602 - . ID=CGI_10012904; scaffold223 WUBlastX LTR_Gypsy 5756 6631 169 - . . scaffold223 GLEAN mRNA 942 7795 0.487602 - . ID=CGI_10012904; scaffold527 WUBlastX DNA_hAT-hATw 358365 358499 24 - . . scaffold527 GLEAN mRNA 356733 368285 0.999351 + . ID=CGI_10015987; scaffold433 WUBlastX DNA_P 408795 409760 332 - . . scaffold433 GLEAN mRNA 407360 429733 0.877924 + . ID=CGI_10027068; scaffold286 WUBlastX LINE_RTE-X 105583 105765 73 + . . scaffold286 GLEAN mRNA 101905 133971 0.984811 - . ID=CGI_10015959; scaffold973 WUBlastX DNA_IS4EU 480001 480165 118 + . . scaffold973 GLEAN mRNA 459812 495219 0.606957 - . ID=CGI_10021557; scaffold973 WUBlastX DNA_IS4EU 482321 482617 207 + . . scaffold973 GLEAN mRNA 459812 495219 0.606957 - . ID=CGI_10021557; scaffold43538 WUBlastX LTR_Gypsy-Cigr 12117 13187 243 + . . scaffold43538 GLEAN mRNA 10395 14337 0.902653 + . ID=CGI_10010812; scaffold230 WUBlastX LINE_Penelope 209757 210194 162 + . . scaffold230 GLEAN mRNA 178498 220276 0.270873 - . ID=CGI_10011252; scaffold603 WUBlastX LINE_L1-Tx1 17018 17824 231 - . . scaffold603 GLEAN mRNA 13948 26603 0.533291 - . ID=CGI_10009894; scaffold603 WUBlastX LINE_L1-Tx1 17883 18185 212 - . . scaffold603 GLEAN mRNA 13948 26603 0.533291 - . ID=CGI_10009894; scaffold603 WUBlastX LINE_L1-Tx1 18439 19599 151 - . . scaffold603 GLEAN mRNA 13948 26603 0.533291 - . ID=CGI_10009894; scaffold41954 WUBlastX LINE_RTE-X 130353 130460 48 - . . scaffold41954 GLEAN mRNA 128673 136852 1 + . ID=CGI_10005855; C32536 WUBlastX LINE_RTE-X 3746 4375 390 - . . C32536 GLEAN mRNA 3574 9269 0.999661 - . ID=CGI_10000910; C32536 WUBlastX LINE_RTE-X 4363 4767 231 - . . C32536 GLEAN mRNA 3574 9269 0.999661 - . ID=CGI_10000910; scaffold1221 WUBlastX LTR_Gypsy 68253 68477 221 - . . scaffold1221 GLEAN mRNA 56411 69596 0.696179 + . ID=CGI_10019728; scaffold562 WUBlastX LINE_CR1-L2 296903 297091 70 - . . scaffold562 GLEAN mRNA 281521 297997 0.448852 + . ID=CGI_10016091; scaffold392 WUBlastX LINE_CR1-L2 788990 789265 67 + . . scaffold392 GLEAN mRNA 784797 793663 0.791625 - . ID=CGI_10024236; scaffold451 WUBlastX LTR_Copia 64255 64506 36 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold804 WUBlastX LTR_Gypsy-Cigr 170037 170303 68 - . . scaffold804 GLEAN mRNA 160406 170673 0.986312 - . ID=CGI_10014856; scaffold557 WUBlastX DNA_Chapaev 366445 366657 34 - . . scaffold557 GLEAN mRNA 364423 369316 0.975044 - . ID=CGI_10017977; scaffold591 WUBlastX LTR_Pao 101759 102166 55 - . . scaffold591 GLEAN mRNA 101702 102166 0.996819 - . ID=CGI_10027554; scaffold1174 WUBlastX LTR_Pao 1091543 1091689 68 + . . scaffold1174 GLEAN mRNA 1080209 1093364 0.548358 + . ID=CGI_10026081; scaffold1715 WUBlastX LTR_Gypsy 333198 333254 45 + . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold1715 WUBlastX LTR_Gypsy 333434 333649 20 + . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold693 WUBlastX LINE_RTE-BovB 10974 11165 37 + . . scaffold693 GLEAN mRNA 1018 11877 0.999949 - . ID=CGI_10000930; scaffold433 WUBlastX LTR_DIRS 1260426 1260611 60 - . . scaffold433 GLEAN mRNA 1258038 1264095 0.626587 - . ID=CGI_10027122; scaffold378 WUBlastX LTR_Gypsy 344684 345169 27 - . . scaffold378 GLEAN mRNA 344618 345241 0.999372 - . ID=CGI_10017652; scaffold19 WUBlastX LTR_Gypsy 140955 141047 26 - . . scaffold19 GLEAN mRNA 112664 148277 0.596648 - . ID=CGI_10010836; scaffold43182 WUBlastX LTR_Gypsy 166179 166463 24 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold794 WUBlastX DNA_Harbinger 262434 262511 50 + . . scaffold794 GLEAN mRNA 251355 264307 1 + . ID=CGI_10017152; scaffold794 WUBlastX DNA_Harbinger 263194 263304 37 + . . scaffold794 GLEAN mRNA 251355 264307 1 + . ID=CGI_10017152; scaffold1449 WUBlastX DNA_TcMar-Marin 73191 73343 35 - . . scaffold1449 GLEAN mRNA 67747 83098 0.84051 + . ID=CGI_10010691; scaffold1562 WUBlastX DNA_TcMar-Marin 105859 105957 65 - . . scaffold1562 GLEAN mRNA 73157 112953 0.997511 - . ID=CGI_10005776; scaffold1560 WUBlastX LINE_I 240834 241130 39 + . . scaffold1560 GLEAN mRNA 240834 241163 0.481188 + . ID=CGI_10009802; scaffold1214 WUBlastX LINE_I 243642 243695 23 + . . scaffold1214 GLEAN mRNA 241265 253884 0.274712 + . ID=CGI_10015480; scaffold13 WUBlastX DNA_hAT-Blackja 172056 172121 26 + . . scaffold13 GLEAN mRNA 172056 194004 0.998501 + . ID=CGI_10013207; scaffold13 WUBlastX DNA_hAT-Blackja 172275 172496 46 + . . scaffold13 GLEAN mRNA 172056 194004 0.998501 + . ID=CGI_10013207; scaffold1227 WUBlastX DNA_Kolobok-Hyd 210601 211017 50 + . . scaffold1227 GLEAN mRNA 209453 211287 0.982351 + . ID=CGI_10010056; scaffold86 WUBlastX LINE_L1-Tx1 218096 218257 29 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold705 WUBlastX LINE_Penelope 345612 345767 52 - . . scaffold705 GLEAN mRNA 340127 351838 0.495675 + . ID=CGI_10015517; scaffold659 WUBlastX DNA_P 11285 11635 65 + . . scaffold659 GLEAN mRNA 29 26278 0.692942 + . ID=CGI_10014692; scaffold1454 WUBlastX LTR_ERV1 66359 66406 28 - . . scaffold1454 GLEAN mRNA 63589 73088 0.838276 - . ID=CGI_10004314; scaffold1715 WUBlastX LINE_RTE-X 337885 338025 21 - . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold257 WUBlastX LINE_RTE-X 319829 319942 73 + . . scaffold257 GLEAN mRNA 306483 324339 0.999073 + . ID=CGI_10027906; scaffold914 WUBlastX LINE_RTE-X 572975 573190 40 - . . scaffold914 GLEAN mRNA 571342 573982 0.999997 + . ID=CGI_10018903; scaffold36278 WUBlastX DNA_PiggyBac 26785 26895 20 - . . scaffold36278 GLEAN mRNA 22300 32002 0.651135 - . ID=CGI_10001848; scaffold200 WUBlastX LINE_RTE-BovB 15084 15263 77 + . . scaffold200 GLEAN mRNA 11471 15537 0.697892 - . ID=CGI_10006218; scaffold502 WUBlastX LINE_RTE-X 574765 574986 57 + . . scaffold502 GLEAN mRNA 565112 575642 1 - . ID=CGI_10024335; scaffold502 WUBlastX LINE_RTE-X 574765 574986 57 + . . scaffold502 GLEAN mRNA 574231 594075 0.544521 + . ID=CGI_10024336; scaffold203 WUBlastX LINE_RTE-X 453175 453552 23 - . . scaffold203 GLEAN mRNA 431495 460852 0.461924 + . ID=CGI_10021073; scaffold833 WUBlastX LINE_L1-Tx1 358665 358865 83 - . . scaffold833 GLEAN mRNA 336322 390734 0.191045 + . ID=CGI_10016744; scaffold492 WUBlastX LINE_L2 884622 884828 51 - . . scaffold492 GLEAN mRNA 881318 888477 0.999998 + . ID=CGI_10024872; scaffold524 WUBlastX LINE_L2 450511 451125 38 - . . scaffold524 GLEAN mRNA 445295 466161 1 + . ID=CGI_10016612; scaffold630 WUBlastX LINE_I 352522 352698 26 - . . scaffold630 GLEAN mRNA 340806 353631 0.861539 - . ID=CGI_10018332; scaffold1541 WUBlastX DNA_hAT-Tip100 471286 471387 27 + . . scaffold1541 GLEAN mRNA 469948 471973 0.864419 + . ID=CGI_10017901; scaffold524 WUBlastX RC_Helitron 250873 251538 86 - . . scaffold524 GLEAN mRNA 241978 255594 0.734579 - . ID=CGI_10016606; scaffold504 WUBlastX LINE_Penelope 56078 56341 47 - . . scaffold504 GLEAN mRNA 50895 74674 0.999922 - . ID=CGI_10016016; scaffold416 WUBlastX LINE_RTE-X 160529 160708 76 - . . scaffold416 GLEAN mRNA 138143 163837 0.657495 + . ID=CGI_10014740; scaffold370 WUBlastX LINE_RTE-X 188248 188574 40 - . . scaffold370 GLEAN mRNA 169419 194648 0.857316 - . ID=CGI_10025527; scaffold683 WUBlastX LINE_RTE-X 81994 82086 42 - . . scaffold683 GLEAN mRNA 80657 98109 0.999674 + . ID=CGI_10010356; scaffold784 WUBlastX LINE_RTE-X 453708 453923 58 + . . scaffold784 GLEAN mRNA 448281 458100 0.401004 + . ID=CGI_10024430; scaffold1585 WUBlastX LINE_RTE-X 7384 7599 71 + . . scaffold1585 GLEAN mRNA 1530 11079 0.999999 - . ID=CGI_10012582; scaffold1810 WUBlastX DNA_Sola 7444 7536 20 + . . scaffold1810 GLEAN mRNA 7368 11444 0.979898 + . ID=CGI_10007553; scaffold86 WUBlastX DNA_Sola 578568 578930 74 + . . scaffold86 GLEAN mRNA 577054 579340 0.999999 + . ID=CGI_10028160; C35042 WUBlastX LINE_CR1-L2 13731 13823 63 - . . C35042 GLEAN mRNA 1730 15534 0.391528 + . ID=CGI_10001403; scaffold448 WUBlastX LINE_CR1 66921 67007 20 + . . scaffold448 GLEAN mRNA 53576 85492 0.998765 + . ID=CGI_10024929; scaffold37794 WUBlastX DNA_hAT-Tip100 34743 35135 83 - . . scaffold37794 GLEAN mRNA 31174 37793 0.544852 + . ID=CGI_10002501; scaffold392 WUBlastX LTR_Gypsy 38338 38520 50 - . . scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; scaffold82 WUBlastX LINE_RTE-BovB 688852 688929 20 - . . scaffold82 GLEAN mRNA 671230 690151 0.999877 - . ID=CGI_10025267; scaffold1255 WUBlastX LTR_Gypsy 214109 214153 21 - . . scaffold1255 GLEAN mRNA 214109 222745 0.998357 - . ID=CGI_10018069; scaffold1036 WUBlastX DNA_Harbinger 598645 598767 98 + . . scaffold1036 GLEAN mRNA 594409 600469 0.995654 - . ID=CGI_10019975; scaffold1101 WUBlastX DNA_Kolobok-IS4 539583 540164 73 + . . scaffold1101 GLEAN mRNA 537182 541543 0.997138 + . ID=CGI_10023032; scaffold271 WUBlastX LINE_L1 469515 469586 28 - . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold1423 WUBlastX LINE_RTE-X 23281 23583 80 + . . scaffold1423 GLEAN mRNA 13450 32441 0.999998 - . ID=CGI_10025403; scaffold1673 WUBlastX LTR_Gypsy 52838 53119 94 - . . scaffold1673 GLEAN mRNA 51832 54257 0.720264 - . ID=CGI_10013570; scaffold950 WUBlastX DNA_TcMar-Tc1 350868 351098 92 - . . scaffold950 GLEAN mRNA 320484 362683 0.981503 - . ID=CGI_10022928; scaffold1237 WUBlastX LTR_Gypsy 258676 259491 48 + . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold760 WUBlastX LTR_Pao 777204 777527 26 - . . scaffold760 GLEAN mRNA 769034 781440 0.699516 - . ID=CGI_10024010; scaffold31382 WUBlastX LTR_Pao 6181 6306 110 + . . scaffold31382 GLEAN mRNA 6169 6891 0.573096 - . ID=CGI_10000732; scaffold117 WUBlastX LINE_CR1 53753 53992 93 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold712 WUBlastX LINE_CR1-L2 436833 437345 81 + . . scaffold712 GLEAN mRNA 407397 462275 0.613636 - . ID=CGI_10016489; scaffold1341 WUBlastX LINE_L2 22346 22552 100 - . . scaffold1341 GLEAN mRNA 4451 30218 0.992186 + . ID=CGI_10004662; scaffold619 WUBlastX LTR_Ngaro 483292 483714 69 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold1347 WUBlastX LTR_Gypsy-Cigr 21728 21850 24 + . . scaffold1347 GLEAN mRNA 21277 29429 0.935835 - . ID=CGI_10012972; scaffold1347 WUBlastX LTR_Gypsy-Cigr 21927 22226 94 + . . scaffold1347 GLEAN mRNA 21277 29429 0.935835 - . ID=CGI_10012972; scaffold39096 WUBlastX LTR_Gypsy 21905 22762 64 + . . scaffold39096 GLEAN mRNA 2759 26289 0.999949 + . ID=CGI_10003146; scaffold1418 WUBlastX DNA_Kolobok-IS4 14005 14370 39 + . . scaffold1418 GLEAN mRNA 13969 14844 0.999965 + . ID=CGI_10001498; scaffold1418 WUBlastX DNA_Kolobok-IS4 14704 14841 78 + . . scaffold1418 GLEAN mRNA 13969 14844 0.999965 + . ID=CGI_10001498; scaffold973 WUBlastX DNA_IS4EU 484446 484655 26 - . . scaffold973 GLEAN mRNA 459812 495219 0.606957 - . ID=CGI_10021557; scaffold895 WUBlastX DNA_Harbinger 175138 175284 44 + . . scaffold895 GLEAN mRNA 174153 176700 0.999921 + . ID=CGI_10011335; scaffold386 WUBlastX LTR_Gypsy 272617 273309 87 + . . scaffold386 GLEAN mRNA 254590 284645 0.652172 - . ID=CGI_10012692; scaffold38828 WUBlastX LTR_ERV1 33023 33556 62 + . . scaffold38828 GLEAN mRNA 31835 37853 0.998504 + . ID=CGI_10003000; scaffold398 WUBlastX LINE_L1 4743 4859 22 - . . scaffold398 GLEAN mRNA 896 15325 0.911211 + . ID=CGI_10004360; scaffold1132 WUBlastX LINE_RTE-X 67986 68279 50 - . . scaffold1132 GLEAN mRNA 47693 94911 0.303068 - . ID=CGI_10023311; scaffold1307 WUBlastX LINE_RTE-X 18320 18478 23 - . . scaffold1307 GLEAN mRNA 6251 45653 0.745308 + . ID=CGI_10023739; scaffold370 WUBlastX LINE_RTE-X 188182 188448 40 - . . scaffold370 GLEAN mRNA 169419 194648 0.857316 - . ID=CGI_10025527; scaffold53 WUBlastX LINE_RTE-X 725812 725994 106 - . . scaffold53 GLEAN mRNA 717033 733892 1 - . ID=CGI_10026682; scaffold492 WUBlastX LINE_RTE-X 432760 433065 67 + . . scaffold492 GLEAN mRNA 430618 435399 1 - . ID=CGI_10024835; scaffold204 WUBlastX LINE_L1-Tx1 821475 821819 44 - . . scaffold204 GLEAN mRNA 815967 826283 0.552692 + . ID=CGI_10026134; scaffold286 WUBlastX LINE_L2 6874 7107 95 + . . scaffold286 GLEAN mRNA 4248 12636 0.682866 - . ID=CGI_10015954; scaffold686 WUBlastX LINE_CR1-L2 2584 2964 93 - . . scaffold686 GLEAN mRNA 377 5602 0.998023 - . ID=CGI_10004460; scaffold368 WUBlastX LTR_Copia 487601 487693 24 - . . scaffold368 GLEAN mRNA 456734 493375 0.348019 + . ID=CGI_10018714; scaffold544 WUBlastX LINE_RTE-BovB 288771 289052 91 - . . scaffold544 GLEAN mRNA 248926 297755 0.519606 - . ID=CGI_10022553; scaffold487 WUBlastX DNA_Kolobok 441902 442141 95 + . . scaffold487 GLEAN mRNA 439996 447135 0.39713 - . ID=CGI_10017054; scaffold1259 WUBlastX DNA_MuDR 15722 16036 39 - . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold664 WUBlastX DNA_TcMar-Marin 655994 656161 52 - . . scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold664 WUBlastX DNA_TcMar-Marin 656884 657039 64 - . . scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold594 WUBlastX LINE_RTE-X 415841 415930 21 - . . scaffold594 GLEAN mRNA 414845 416168 0.999391 - . ID=CGI_10016391; scaffold546 WUBlastX LINE_RTE-X 36496 36798 27 - . . scaffold546 GLEAN mRNA 24963 48088 0.999351 + . ID=CGI_10020990; scaffold816 WUBlastX DNA_TcMar-Tc1 229897 230046 65 - . . scaffold816 GLEAN mRNA 223398 238743 0.358147 + . ID=CGI_10015655; scaffold1740 WUBlastX DNA_Sola 208365 208850 33 - . . scaffold1740 GLEAN mRNA 208281 211238 0.866192 - . ID=CGI_10011449; scaffold1740 WUBlastX DNA_Sola 209023 209190 74 - . . scaffold1740 GLEAN mRNA 208281 211238 0.866192 - . ID=CGI_10011449; scaffold1651 WUBlastX DNA_TcMar-Tc1 65256 65534 79 - . . scaffold1651 GLEAN mRNA 64291 72997 0.999027 + . ID=CGI_10007888; scaffold38510 WUBlastX DNA_Sola 24590 24946 43 + . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold41700 WUBlastX LTR_Gypsy 63979 64018 22 + . . scaffold41700 GLEAN mRNA 62822 64018 0.99493 + . ID=CGI_10005503; scaffold1447 WUBlastX DNA_TcMar-Tc1 153109 153432 93 - . . scaffold1447 GLEAN mRNA 145066 154561 0.838589 - . ID=CGI_10013818; scaffold894 WUBlastX LINE_L1-Tx1 181413 181877 35 + . . scaffold894 GLEAN mRNA 171936 185580 0.999624 + . ID=CGI_10008548; scaffold1426 WUBlastX DNA_hAT-Charlie 6647 6973 86 + . . scaffold1426 GLEAN mRNA 415 27976 0.990953 - . ID=CGI_10003025; scaffold413 WUBlastX LTR_Gypsy 554487 555197 84 + . . scaffold413 GLEAN mRNA 553173 557512 0.824889 + . ID=CGI_10022810; scaffold43500 WUBlastX LINE_CR1 139719 139952 91 + . . scaffold43500 GLEAN mRNA 139719 139958 0.7334 + . ID=CGI_10010618; scaffold678 WUBlastX LTR_Ngaro 89375 89536 28 - . . scaffold678 GLEAN mRNA 85525 97631 0.702112 + . ID=CGI_10026333; scaffold43696 WUBlastX LTR_Gypsy 202671 202766 44 + . . scaffold43696 GLEAN mRNA 200896 208237 0.287333 + . ID=CGI_10011805; scaffold1233 WUBlastX DNA_IS4EU 13343 13570 120 - . . scaffold1233 GLEAN mRNA 818 16086 0.387616 - . ID=CGI_10003098; scaffold41664 WUBlastX DNA_IS4EU 38370 38816 60 + . . scaffold41664 GLEAN mRNA 32940 39733 0.880346 + . ID=CGI_10005414; scaffold177 WUBlastX DNA_Harbinger 283562 283834 45 - . . scaffold177 GLEAN mRNA 240974 299351 0.498178 - . ID=CGI_10016064; scaffold38780 WUBlastX DNA_Merlin 2838 3248 101 + . . scaffold38780 GLEAN mRNA 2671 16848 0.959487 - . ID=CGI_10002959; scaffold599 WUBlastX LINE_L1-Tx1 316976 317296 77 + . . scaffold599 GLEAN mRNA 290478 340724 0.424971 - . ID=CGI_10021714; scaffold1318 WUBlastX DNA_TcMar-Tc1 48151 48738 81 + . . scaffold1318 GLEAN mRNA 47679 59079 0.328272 + . ID=CGI_10008644; scaffold683 WUBlastX LINE_CR1 160437 160850 61 - . . scaffold683 GLEAN mRNA 156724 197942 0.700222 + . ID=CGI_10010360; scaffold719 WUBlastX LTR_Pao 352443 352862 130 + . . scaffold719 GLEAN mRNA 352016 396683 0.96406 + . ID=CGI_10016008; scaffold315 WUBlastX LTR_Pao 204209 204892 47 - . . scaffold315 GLEAN mRNA 198637 213809 0.999922 + . ID=CGI_10020410; scaffold12 WUBlastX LTR_Gypsy 351109 351246 29 + . . scaffold12 GLEAN mRNA 326477 354530 0.999321 + . ID=CGI_10018042; scaffold707 WUBlastX LTR_Gypsy 148260 148394 39 + . . scaffold707 GLEAN mRNA 147246 152183 0.998094 + . ID=CGI_10007725; scaffold911 WUBlastX LTR_Gypsy 95333 95608 47 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold39476 WUBlastX LTR_Gypsy 49914 50147 119 + . . scaffold39476 GLEAN mRNA 49505 51682 1 + . ID=CGI_10002876; scaffold933 WUBlastX DNA_Harbinger 445226 445285 38 - . . scaffold933 GLEAN mRNA 438762 447503 0.391135 + . ID=CGI_10016727; scaffold933 WUBlastX DNA_Harbinger 445285 445491 97 - . . scaffold933 GLEAN mRNA 438762 447503 0.391135 + . ID=CGI_10016727; scaffold42408 WUBlastX LINE_L1-Tx1 113418 113525 22 + . . scaffold42408 GLEAN mRNA 111494 115012 0.832978 - . ID=CGI_10006751; scaffold41598 WUBlastX DNA_PiggyBac 65913 66404 72 - . . scaffold41598 GLEAN mRNA 59426 74794 0.449575 - . ID=CGI_10005304; scaffold43794 WUBlastX LINE_RTE-X 97162 97674 70 - . . scaffold43794 GLEAN mRNA 82340 100661 0.914367 - . ID=CGI_10012417; scaffold962 WUBlastX LINE_RTE-X 975188 975367 102 + . . scaffold962 GLEAN mRNA 965990 978537 0.921741 - . ID=CGI_10027674; scaffold286 WUBlastX DNA_TcMar-Tc1 435123 435191 38 - . . scaffold286 GLEAN mRNA 423114 437338 0.999999 - . ID=CGI_10015973; scaffold286 WUBlastX DNA_TcMar-Tc1 435123 435191 38 - . . scaffold286 GLEAN mRNA 433158 447481 0.525246 + . ID=CGI_10015974; scaffold40832 WUBlastX LINE_L1-Tx1 82561 82635 23 - . . scaffold40832 GLEAN mRNA 51373 82869 0.350561 + . ID=CGI_10004457; scaffold754 WUBlastX LINE_L2 45063 45380 111 + . . scaffold754 GLEAN mRNA 34463 47005 0.401358 + . ID=CGI_10014062; scaffold40828 WUBlastX LTR_Gypsy 57493 57660 91 - . . scaffold40828 GLEAN mRNA 28348 61048 0.605765 + . ID=CGI_10004502; scaffold43076 WUBlastX DNA_IS4EU 67403 68029 63 + . . scaffold43076 GLEAN mRNA 66506 68912 0.997439 + . ID=CGI_10008761; scaffold247 WUBlastX LINE_RTE-BovB 331255 331491 37 - . . scaffold247 GLEAN mRNA 324544 333278 0.675637 - . ID=CGI_10018594; scaffold1869 WUBlastX DNA_Sola 15493 15843 122 + . . scaffold1869 GLEAN mRNA 8009 37015 0.526029 - . ID=CGI_10009011; scaffold1869 WUBlastX DNA_Sola 15493 15843 122 + . . scaffold1869 GLEAN mRNA 11164 16956 0.999984 + . ID=CGI_10009012; scaffold510 WUBlastX DNA_IS4EU 272658 272858 74 + . . scaffold510 GLEAN mRNA 271151 273234 0.650871 + . ID=CGI_10013771; scaffold386 WUBlastX DNA_Kolobok-IS4 211376 211888 76 + . . scaffold386 GLEAN mRNA 207482 239068 0.43817 - . ID=CGI_10012689; scaffold43280 WUBlastX LINE_L1-Tx1 111710 112285 127 - . . scaffold43280 GLEAN mRNA 92021 113272 0.543593 + . ID=CGI_10009655; scaffold335 WUBlastX LINE_L1-Tx1 383982 384590 75 - . . scaffold335 GLEAN mRNA 381520 394130 0.458743 - . ID=CGI_10017105; scaffold1894 WUBlastX LINE_L1-Tx1 42057 42506 124 - . . scaffold1894 GLEAN mRNA 18177 67015 0.499328 - . ID=CGI_10013334; scaffold184 WUBlastX DNA_TcMar-Tc1 194183 194551 55 + . . scaffold184 GLEAN mRNA 186538 196154 0.912721 - . ID=CGI_10014797; scaffold1188 WUBlastX LINE_Penelope 164812 165516 116 - . . scaffold1188 GLEAN mRNA 159311 176924 0.555609 - . ID=CGI_10025460; scaffold1097 WUBlastX LINE_RTE-X 797746 797946 22 + . . scaffold1097 GLEAN mRNA 796138 800546 1 + . ID=CGI_10024550; scaffold42128 WUBlastX DNA_TcMar-Tc1 12784 12948 53 + . . scaffold42128 GLEAN mRNA 1970 15266 0.99078 + . ID=CGI_10006194; scaffold578 WUBlastX DNA_TcMar-Tc1 340163 340585 111 + . . scaffold578 GLEAN mRNA 339528 348737 0.999218 - . ID=CGI_10015129; scaffold39470 WUBlastX LTR_Ngaro 23043 24047 24 - . . scaffold39470 GLEAN mRNA 18519 32880 0.998788 - . ID=CGI_10003379; scaffold1863 WUBlastX DNA_Harbinger 372276 372554 40 + . . scaffold1863 GLEAN mRNA 370491 381418 0.892726 + . ID=CGI_10016696; scaffold853 WUBlastX LINE_RTE-X 229300 229596 105 - . . scaffold853 GLEAN mRNA 228240 239310 0.61441 + . ID=CGI_10017498; scaffold38464 WUBlastX LTR_Ngaro 32260 32370 20 - . . scaffold38464 GLEAN mRNA 29156 32869 1 - . ID=CGI_10002793; scaffold1149 WUBlastX LTR_Ngaro 126480 126605 58 + . . scaffold1149 GLEAN mRNA 123566 144809 0.531581 + . ID=CGI_10023452; scaffold1149 WUBlastX LTR_Ngaro 126626 126865 78 + . . scaffold1149 GLEAN mRNA 123566 144809 0.531581 + . ID=CGI_10023452; scaffold169 WUBlastX DNA_Sola 803577 804788 67 + . . scaffold169 GLEAN mRNA 802679 805184 0.636202 + . ID=CGI_10022966; scaffold621 WUBlastX LTR_DIRS 151982 153964 782 - . . scaffold621 GLEAN mRNA 127381 238205 0.796035 + . ID=CGI_10017672; scaffold591 WUBlastX LTR_Ngaro 601091 602518 831 - . . scaffold591 GLEAN mRNA 577441 607957 0.997895 + . ID=CGI_10027576; scaffold814 WUBlastX LTR_Ngaro 86488 87855 949 - . . scaffold814 GLEAN mRNA 83997 88485 0.997298 + . ID=CGI_10008194; scaffold265 WUBlastX LTR_Ngaro 68521 69009 321 - . . scaffold265 GLEAN mRNA 64182 72514 0.643455 - . ID=CGI_10003429; scaffold67 WUBlastX DNA_TcMar-Tc2 82412 83734 1035 - . . scaffold67 GLEAN mRNA 72770 90591 0.702383 - . ID=CGI_10018264; scaffold42840 WUBlastX LINE_L2 188246 188380 61 + . . scaffold42840 GLEAN mRNA 176465 192129 0.833079 - . ID=CGI_10007840; scaffold610 WUBlastX LTR_Ngaro 280583 281212 73 - . . scaffold610 GLEAN mRNA 278888 282376 0.9996 + . ID=CGI_10021107; scaffold39974 WUBlastX LTR_Ngaro 69202 69807 106 + . . scaffold39974 GLEAN mRNA 67732 80297 0.969362 + . ID=CGI_10003760; scaffold1753 WUBlastX RC_Helitron 43160 44362 20 + . . scaffold1753 GLEAN mRNA 42409 50828 0.996749 + . ID=CGI_10010802; scaffold1203 WUBlastX LINE_R2-Hero 97426 97500 53 + . . scaffold1203 GLEAN mRNA 96599 98385 0.992512 + . ID=CGI_10010424; scaffold1203 WUBlastX LINE_R2-Hero 98076 98174 43 + . . scaffold1203 GLEAN mRNA 96599 98385 0.992512 + . ID=CGI_10010424; scaffold252 WUBlastX DNA_Kolobok-IS4 228093 228335 126 - . . scaffold252 GLEAN mRNA 228093 228335 1 - . ID=CGI_10010770; scaffold794 WUBlastX LTR_Gypsy 281424 281468 22 + . . scaffold794 GLEAN mRNA 271227 282643 0.491343 - . ID=CGI_10017153; scaffold38934 WUBlastX DNA_Kolobok 45976 46143 86 + . . scaffold38934 GLEAN mRNA 26982 47955 0.375661 + . ID=CGI_10003097; scaffold412 WUBlastX LTR_Ngaro 73280 73465 92 + . . scaffold412 GLEAN mRNA 49163 134272 0.261275 - . ID=CGI_10018559; scaffold101 WUBlastX DNA_MuDR 322332 322724 90 + . . scaffold101 GLEAN mRNA 308692 328638 0.999351 + . ID=CGI_10021645; scaffold101 WUBlastX DNA_MuDR 322332 322724 90 + . . scaffold101 GLEAN mRNA 312467 328385 0.843729 - . ID=CGI_10021646; scaffold1663 WUBlastX LINE_RTE-X 18006 18299 74 + . . scaffold1663 GLEAN mRNA 14275 33810 0.998969 - . ID=CGI_10009863; scaffold712 WUBlastX LINE_R2-Hero 344996 345343 245 + . . scaffold712 GLEAN mRNA 336086 347992 0.995237 + . ID=CGI_10016485; scaffold712 WUBlastX LINE_R2-Hero 345475 346533 289 + . . scaffold712 GLEAN mRNA 336086 347992 0.995237 + . ID=CGI_10016485; scaffold839 WUBlastX LINE_L1-Tx1 83778 84014 53 - . . scaffold839 GLEAN mRNA 78755 87937 0.999546 - . ID=CGI_10004337; scaffold1532 WUBlastX LTR_Gypsy-Cigr 232054 232605 128 + . . scaffold1532 GLEAN mRNA 231877 233427 0.438723 + . ID=CGI_10028239; scaffold1880 WUBlastX LTR_Pao 191335 191913 196 + . . scaffold1880 GLEAN mRNA 190302 194144 1 - . ID=CGI_10008214; scaffold398 WUBlastX LINE_CR1 4231 4593 83 - . . scaffold398 GLEAN mRNA 896 15325 0.911211 + . ID=CGI_10004360; scaffold507 WUBlastX LTR_Ngaro 41997 42536 123 - . . scaffold507 GLEAN mRNA 41380 65568 0.398486 - . ID=CGI_10019084; scaffold41162 WUBlastX LTR_Gypsy 88937 90127 87 - . . scaffold41162 GLEAN mRNA 73852 107906 0.526733 + . ID=CGI_10004777; scaffold1058 WUBlastX DNA_Harbinger 82221 82583 163 + . . scaffold1058 GLEAN mRNA 81813 92966 0.499919 - . ID=CGI_10004879; scaffold962 WUBlastX LINE_RTE-X 1086555 1087031 132 - . . scaffold962 GLEAN mRNA 1078349 1089726 1 - . ID=CGI_10027683; scaffold1794 WUBlastX LINE_RTE-BovB 66669 67031 153 + . . scaffold1794 GLEAN mRNA 63579 68209 1 - . ID=CGI_10019568; scaffold1442 WUBlastX LINE_L1-Tx1 19566 19772 34 - . . scaffold1442 GLEAN mRNA 5012 20569 0.987275 - . ID=CGI_10003583; scaffold809 WUBlastX LTR_Ngaro 106439 107998 1103 + . . scaffold809 GLEAN mRNA 102798 115167 0.991748 + . ID=CGI_10006490; scaffold1561 WUBlastX LINE_RTE-X 18291 19007 32 - . . scaffold1561 GLEAN mRNA 6278 19988 0.999234 + . ID=CGI_10005689; scaffold1350 WUBlastX LTR_DIRS 469511 469639 87 + . . scaffold1350 GLEAN mRNA 448816 473345 0.450856 - . ID=CGI_10017319; scaffold169 WUBlastX DNA_Sola 562612 564417 864 + . . scaffold169 GLEAN mRNA 562612 565291 1 + . ID=CGI_10022958; scaffold313 WUBlastX LTR_Ngaro 1024006 1024290 99 - . . scaffold313 GLEAN mRNA 1014206 1026476 0.354197 - . ID=CGI_10026633; scaffold847 WUBlastX LINE_L1-Tx1 706056 706475 116 - . . scaffold847 GLEAN mRNA 701746 708200 0.916724 - . ID=CGI_10022288; scaffold36790 WUBlastX LTR_Ngaro 26028 26633 138 + . . scaffold36790 GLEAN mRNA 14645 35591 0.936014 - . ID=CGI_10002141; scaffold82 WUBlastX LINE_L2 214904 215809 559 - . . scaffold82 GLEAN mRNA 207536 221128 0.649891 + . ID=CGI_10025248; scaffold1062 WUBlastX LTR_Gypsy-Troyk 100824 101606 132 - . . scaffold1062 GLEAN mRNA 100465 126410 0.975343 - . ID=CGI_10005742; scaffold1532 WUBlastX LTR_Ngaro 1133427 1133612 55 - . . scaffold1532 GLEAN mRNA 1127066 1152811 0.992288 + . ID=CGI_10028283; scaffold976 WUBlastX LTR_Gypsy 42888 43376 24 - . . scaffold976 GLEAN mRNA 40652 60127 0.884558 - . ID=CGI_10014002; scaffold43258 WUBlastX LINE_RTE-X 143111 143446 57 - . . scaffold43258 GLEAN mRNA 134740 154295 0.483992 + . ID=CGI_10009634; scaffold1104 WUBlastX LINE_RTE-X 165952 167313 377 + . . scaffold1104 GLEAN mRNA 162897 187197 0.499418 + . ID=CGI_10020361; scaffold43290 WUBlastX LINE_L2 208532 208663 42 + . . scaffold43290 GLEAN mRNA 208134 214602 0.737369 + . ID=CGI_10009648; scaffold1377 WUBlastX LTR_DIRS 7970 8221 98 - . . scaffold1377 GLEAN mRNA 4634 19279 0.99195 + . ID=CGI_10008617; C34110 WUBlastX DNA_IS4EU 13137 13328 55 + . . C34110 GLEAN mRNA 2583 15463 0.431065 - . ID=CGI_10001212; scaffold1209 WUBlastX LINE_L1 20640 20810 99 - . . scaffold1209 GLEAN mRNA 16133 36287 0.961312 - . ID=CGI_10007964; scaffold1518 WUBlastX LTR_Ngaro 271069 271848 190 - . . scaffold1518 GLEAN mRNA 258241 287104 0.241996 + . ID=CGI_10017803; scaffold77 WUBlastX LINE_L1-Tx1 1120237 1120551 56 - . . scaffold77 GLEAN mRNA 1111468 1123998 0.545449 + . ID=CGI_10028021; scaffold189 WUBlastX LTR_Gypsy 36819 37382 200 - . . scaffold189 GLEAN mRNA 16396 38520 0.48054 + . ID=CGI_10018663; scaffold42656 WUBlastX LINE_L1-Tx1 64408 64662 82 - . . scaffold42656 GLEAN mRNA 57925 65294 1 - . ID=CGI_10007413; scaffold1186 WUBlastX LTR_Pao 203615 203848 74 + . . scaffold1186 GLEAN mRNA 187396 222353 0.578632 + . ID=CGI_10010597; scaffold1750 WUBlastX LTR_Pao 634133 634309 36 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold1750 WUBlastX LTR_Pao 636496 636777 216 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold332 WUBlastX LINE_L1-Tx1 404655 407564 1091 + . . scaffold332 GLEAN mRNA 403551 412368 0.544643 + . ID=CGI_10020886; scaffold332 WUBlastX LINE_L1-Tx1 408121 408456 20 + . . scaffold332 GLEAN mRNA 403551 412368 0.544643 + . ID=CGI_10020886; scaffold601 WUBlastX LINE_CR1 600386 601423 181 + . . scaffold601 GLEAN mRNA 586023 611758 0.912594 - . ID=CGI_10026838; scaffold313 WUBlastX LTR_Ngaro 1023659 1024000 111 - . . scaffold313 GLEAN mRNA 1014206 1026476 0.354197 - . ID=CGI_10026633; scaffold63 WUBlastX DNA_En-Spm 417499 418320 195 + . . scaffold63 GLEAN mRNA 406163 425324 1 - . ID=CGI_10017281; scaffold1036 WUBlastX LTR_Gypsy 330530 330557 202 - . . scaffold1036 GLEAN mRNA 330530 330844 0.617695 - . ID=CGI_10019962; scaffold1036 WUBlastX LTR_Gypsy 329763 330557 202 - . . scaffold1036 GLEAN mRNA 322076 338878 0.999998 + . ID=CGI_10019961; scaffold368 WUBlastX DNA_IS4EU 89082 90041 65 + . . scaffold368 GLEAN mRNA 78208 92005 0.999415 - . ID=CGI_10018696; C34110 WUBlastX DNA_IS4EU 12150 12776 32 + . . C34110 GLEAN mRNA 2583 15463 0.431065 - . ID=CGI_10001212; scaffold43726 WUBlastX LINE_L2 222955 223572 211 - . . scaffold43726 GLEAN mRNA 221786 248971 0.998252 + . ID=CGI_10012027; scaffold36794 WUBlastX LTR_Ngaro 5477 6130 154 + . . scaffold36794 GLEAN mRNA 3731 8474 0.499919 + . ID=CGI_10002119; scaffold1423 WUBlastX LTR_Ngaro 1060442 1060786 66 + . . scaffold1423 GLEAN mRNA 1057538 1060967 0.980388 + . ID=CGI_10025454; scaffold1221 WUBlastX DNA_Kolobok 35746 35946 116 - . . scaffold1221 GLEAN mRNA 35728 35946 1 - . ID=CGI_10019725; scaffold42656 WUBlastX LINE_L1-Tx1 62604 62951 38 - . . scaffold42656 GLEAN mRNA 57925 65294 1 - . ID=CGI_10007413; scaffold925 WUBlastX LTR_Gypsy-Cigr 249021 250142 402 - . . scaffold925 GLEAN mRNA 245750 251543 0.996749 - . ID=CGI_10017422; scaffold36 WUBlastX LTR_Gypsy 3719 5191 1108 + . . scaffold36 GLEAN mRNA 2519 8438 0.614104 + . ID=CGI_10001028; scaffold243 WUBlastX DNA_Kolobok 46617 46823 151 - . . scaffold243 GLEAN mRNA 45508 46823 0.518363 - . ID=CGI_10006814; scaffold37900 WUBlastX DNA_IS4EU 30735 31409 191 - . . scaffold37900 GLEAN mRNA 13260 48286 0.694403 - . ID=CGI_10002507; scaffold733 WUBlastX LINE_L2 413087 413638 224 - . . scaffold733 GLEAN mRNA 408619 548638 0.684241 + . ID=CGI_10025876; scaffold695 WUBlastX LINE_L1 90554 90730 103 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold976 WUBlastX LINE_L2 372295 372846 62 + . . scaffold976 GLEAN mRNA 356629 381531 0.51151 + . ID=CGI_10014020; scaffold1097 WUBlastX LINE_RTE-BovB 712094 712612 318 + . . scaffold1097 GLEAN mRNA 684510 718767 0.99504 - . ID=CGI_10024542; scaffold1097 WUBlastX LINE_RTE-BovB 712602 713060 482 + . . scaffold1097 GLEAN mRNA 684510 718767 0.99504 - . ID=CGI_10024542; scaffold1097 WUBlastX LINE_RTE-BovB 713066 713845 452 + . . scaffold1097 GLEAN mRNA 684510 718767 0.99504 - . ID=CGI_10024542; scaffold1097 WUBlastX LINE_RTE-BovB 713820 714500 673 + . . scaffold1097 GLEAN mRNA 684510 718767 0.99504 - . ID=CGI_10024542; scaffold242 WUBlastX LTR_Pao 75832 76443 35 + . . scaffold242 GLEAN mRNA 75832 84666 0.771995 + . ID=CGI_10007083; scaffold242 WUBlastX LTR_Pao 76722 77186 194 + . . scaffold242 GLEAN mRNA 75832 84666 0.771995 + . ID=CGI_10007083; C23734 WUBlastX LTR_Gypsy 512 712 246 - . . C23734 GLEAN mRNA 512 712 1 - . ID=CGI_10000149; scaffold870 WUBlastX LTR_Gypsy 140458 141402 223 - . . scaffold870 GLEAN mRNA 139854 163294 0.423462 + . ID=CGI_10007496; scaffold1397 WUBlastX DNA_Sola 135079 135828 35 + . . scaffold1397 GLEAN mRNA 135079 136782 0.995825 + . ID=CGI_10017117; scaffold1397 WUBlastX DNA_Sola 135952 136779 184 + . . scaffold1397 GLEAN mRNA 135079 136782 0.995825 + . ID=CGI_10017117; scaffold1679 WUBlastX LTR_Gypsy 27572 28150 139 - . . scaffold1679 GLEAN mRNA 27427 41298 0.999999 - . ID=CGI_10002338; scaffold1679 WUBlastX LTR_Gypsy 29308 30708 1157 - . . scaffold1679 GLEAN mRNA 27427 41298 0.999999 - . ID=CGI_10002338; scaffold427 WUBlastX LTR_Gypsy 76749 79736 2135 + . . scaffold427 GLEAN mRNA 74413 82948 0.777732 - . ID=CGI_10006661; scaffold773 WUBlastX LTR_Gypsy 267321 267572 46 + . . scaffold773 GLEAN mRNA 235107 267865 0.138953 - . ID=CGI_10011348; scaffold1704 WUBlastX LINE_RTE-X 36210 37103 146 + . . scaffold1704 GLEAN mRNA 35457 41695 0.675217 - . ID=CGI_10010162; scaffold1730 WUBlastX DNA_Maverick 134056 134436 285 + . . scaffold1730 GLEAN mRNA 128597 135866 0.888729 - . ID=CGI_10012255; scaffold976 WUBlastX DNA_TcMar-Tc1 49413 49634 132 - . . scaffold976 GLEAN mRNA 40652 60127 0.884558 - . ID=CGI_10014002; scaffold1459 WUBlastX LINE_L1 16104 16487 66 + . . scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; scaffold41660 WUBlastX LINE_RTE-X 80133 80936 180 - . . scaffold41660 GLEAN mRNA 76250 87688 0.999676 + . ID=CGI_10005399; scaffold750 WUBlastX LINE_CR1-L2 15013 15135 40 + . . scaffold750 GLEAN mRNA 5241 30687 0.971968 + . ID=CGI_10022205; scaffold1476 WUBlastX LINE_RTE-X 173715 174107 111 - . . scaffold1476 GLEAN mRNA 169615 179488 0.862141 + . ID=CGI_10009826; scaffold1174 WUBlastX LINE_L1-Tx1 37143 38144 133 - . . scaffold1174 GLEAN mRNA 34818 43941 1 - . ID=CGI_10026023; scaffold61 WUBlastX LINE_RTE-X 91091 91441 68 + . . scaffold61 GLEAN mRNA 83781 97404 0.999676 - . ID=CGI_10016342; scaffold210 WUBlastX LINE_RTE-X 141330 141659 157 + . . scaffold210 GLEAN mRNA 130765 152251 0.999676 - . ID=CGI_10015883; scaffold71 WUBlastX LTR_Ngaro 272087 272968 243 + . . scaffold71 GLEAN mRNA 268268 281594 0.588785 + . ID=CGI_10015059; scaffold41684 WUBlastX LTR_Ngaro 42784 43164 163 + . . scaffold41684 GLEAN mRNA 27935 49740 0.93781 - . ID=CGI_10005434; scaffold1067 WUBlastX DNA_En-Spm 98982 100034 247 + . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold896 WUBlastX LINE_R2-Hero 115945 116220 42 + . . scaffold896 GLEAN mRNA 79994 116374 0.57033 - . ID=CGI_10022832; scaffold41684 WUBlastX LTR_Ngaro 43155 43442 176 + . . scaffold41684 GLEAN mRNA 27935 49740 0.93781 - . ID=CGI_10005434; scaffold1322 WUBlastX LTR_Ngaro 301264 301572 71 - . . scaffold1322 GLEAN mRNA 265135 302274 0.499623 + . ID=CGI_10019472; scaffold226 WUBlastX LTR_Gypsy 921350 921733 99 + . . scaffold226 GLEAN mRNA 913200 931789 0.655497 - . ID=CGI_10025388; scaffold1710 WUBlastX LINE_L1-Tx1 136229 136336 24 - . . scaffold1710 GLEAN mRNA 132993 137298 0.651135 - . ID=CGI_10022342; scaffold1710 WUBlastX LINE_L1-Tx1 136330 136929 297 - . . scaffold1710 GLEAN mRNA 132993 137298 0.651135 - . ID=CGI_10022342; scaffold19 WUBlastX DNA_TcMar-Tc1 152225 152605 157 - . . scaffold19 GLEAN mRNA 151397 159937 0.999878 + . ID=CGI_10010837; scaffold485 WUBlastX DNA_hAT 121678 123159 274 - . . scaffold485 GLEAN mRNA 121480 123159 1 - . ID=CGI_10024145; scaffold1741 WUBlastX DNA_Kolobok 813354 813485 28 - . . scaffold1741 GLEAN mRNA 804296 818884 1 - . ID=CGI_10024052; scaffold82 WUBlastX LINE_RTE-X 184246 184665 101 - . . scaffold82 GLEAN mRNA 181182 187437 1 + . ID=CGI_10025244; scaffold39972 WUBlastX LINE_L1 41384 41911 93 + . . scaffold39972 GLEAN mRNA 35765 49275 0.995966 + . ID=CGI_10003708; scaffold578 WUBlastX LTR_DIRS 358034 358834 296 - . . scaffold578 GLEAN mRNA 348664 361929 0.458006 + . ID=CGI_10015130; scaffold38026 WUBlastX LTR_Gypsy 25259 25435 79 + . . scaffold38026 GLEAN mRNA 24330 29871 1 - . ID=CGI_10002428; scaffold86 WUBlastX LINE_L1-Tx1 217920 218075 35 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold40836 WUBlastX LINE_CR1-L2 81789 81959 29 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold41816 WUBlastX LINE_RTE-X 86411 86608 98 - . . scaffold41816 GLEAN mRNA 84334 89370 0.999542 + . ID=CGI_10005649; scaffold783 WUBlastX LTR_Pao 273407 273670 41 - . . scaffold783 GLEAN mRNA 271175 288350 0.999949 + . ID=CGI_10011687; scaffold535 WUBlastX DNA_IS4EU 4266 4967 372 - . . scaffold535 GLEAN mRNA 109 7288 0.491277 + . ID=CGI_10020280; scaffold412 WUBlastX LINE_L1 148033 148224 43 + . . scaffold412 GLEAN mRNA 141227 160730 0.499998 - . ID=CGI_10018560; scaffold1561 WUBlastX LINE_RTE-X 98881 99909 246 - . . scaffold1561 GLEAN mRNA 90687 107153 0.999946 - . ID=CGI_10005694; scaffold1866 WUBlastX LINE_CR1-L2 206893 207615 66 + . . scaffold1866 GLEAN mRNA 197037 209666 0.769721 - . ID=CGI_10017910; scaffold43538 WUBlastX LTR_Gypsy 10572 10748 32 + . . scaffold43538 GLEAN mRNA 10395 14337 0.902653 + . ID=CGI_10010812; scaffold1785 WUBlastX LINE_L1-Tx1 843163 843819 191 + . . scaffold1785 GLEAN mRNA 838180 855518 0.197068 - . ID=CGI_10024401; scaffold39758 WUBlastX LINE_RTE-BovB 62980 63174 31 - . . scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold43804 WUBlastX LINE_RTE-X 213118 214191 298 + . . scaffold43804 GLEAN mRNA 206873 222843 0.544849 - . ID=CGI_10012559; scaffold1503 WUBlastX DNA_TcMar-Tc1 57620 57901 26 - . . scaffold1503 GLEAN mRNA 55967 67698 1 + . ID=CGI_10009528; scaffold35896 WUBlastX DNA_TcMar-Tc1 9402 9929 154 + . . scaffold35896 GLEAN mRNA 578 26444 0.497805 - . ID=CGI_10001642; scaffold35896 WUBlastX DNA_TcMar-Tc1 10072 10335 111 + . . scaffold35896 GLEAN mRNA 578 26444 0.497805 - . ID=CGI_10001642; scaffold1663 WUBlastX DNA_MuDR 108033 108587 62 - . . scaffold1663 GLEAN mRNA 68504 119090 0.88293 - . ID=CGI_10009864; scaffold347 WUBlastX LINE_CR1 129671 130129 308 + . . scaffold347 GLEAN mRNA 127096 135007 0.556255 - . ID=CGI_10021779; scaffold1333 WUBlastX LTR_Ngaro 54289 55152 333 - . . scaffold1333 GLEAN mRNA 51293 57849 0.723221 - . ID=CGI_10009674; scaffold1866 WUBlastX LINE_CR1-L2 206085 206840 175 + . . scaffold1866 GLEAN mRNA 197037 209666 0.769721 - . ID=CGI_10017910; scaffold1866 WUBlastX LINE_CR1-L2 207088 207774 133 + . . scaffold1866 GLEAN mRNA 197037 209666 0.769721 - . ID=CGI_10017910; scaffold35712 WUBlastX LINE_RTE-X 6532 7506 278 + . . scaffold35712 GLEAN mRNA 3858 24173 0.47659 + . ID=CGI_10001589; scaffold230 WUBlastX DNA_hAT-Tip100 129691 129825 56 - . . scaffold230 GLEAN mRNA 126666 144461 0.534748 - . ID=CGI_10011251; scaffold1173 WUBlastX DNA_TcMar-m44 68376 69146 453 + . . scaffold1173 GLEAN mRNA 66584 69723 1 + . ID=CGI_10005745; scaffold1104 WUBlastX DNA_TcMar-Tc1 80158 81195 431 - . . scaffold1104 GLEAN mRNA 59457 92250 0.999673 + . ID=CGI_10020353; scaffold1179 WUBlastX LTR_Gypsy 22773 22970 111 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold39972 WUBlastX LINE_L1-Tx1 41235 41378 68 + . . scaffold39972 GLEAN mRNA 35765 49275 0.995966 + . ID=CGI_10003708; scaffold721 WUBlastX LINE_L2 83194 83847 324 + . . scaffold721 GLEAN mRNA 68079 89248 0.992034 + . ID=CGI_10021995; scaffold1103 WUBlastX LINE_L2 12576 12944 43 + . . scaffold1103 GLEAN mRNA 2927 17962 0.836195 - . ID=CGI_10004868; scaffold1794 WUBlastX DNA_Academ 551697 552140 217 - . . scaffold1794 GLEAN mRNA 551697 552194 0.854769 - . ID=CGI_10019596; scaffold53 WUBlastX DNA_IS4EU 1154744 1155301 216 + . . scaffold53 GLEAN mRNA 1154714 1165146 0.994946 + . ID=CGI_10026702; scaffold53 WUBlastX DNA_IS4EU 1155538 1155711 93 + . . scaffold53 GLEAN mRNA 1154714 1165146 0.994946 + . ID=CGI_10026702; scaffold53 WUBlastX DNA_IS4EU 1156241 1156813 160 + . . scaffold53 GLEAN mRNA 1154714 1165146 0.994946 + . ID=CGI_10026702; scaffold760 WUBlastX LINE_L1-Tx1 127617 128279 67 + . . scaffold760 GLEAN mRNA 117770 147032 0.706686 + . ID=CGI_10023976; scaffold1103 WUBlastX LINE_CR1 12507 12890 21 + . . scaffold1103 GLEAN mRNA 2927 17962 0.836195 - . ID=CGI_10004868; scaffold71 WUBlastX LTR_Ngaro 270517 272028 431 + . . scaffold71 GLEAN mRNA 268268 281594 0.588785 + . ID=CGI_10015059; scaffold828 WUBlastX LINE_L1-Tx1 75713 77839 341 + . . scaffold828 GLEAN mRNA 15085 78014 0.596994 - . ID=CGI_10007364; C29438 WUBlastX LINE_RTE-X 4440 5207 220 + . . C29438 GLEAN mRNA 533 5889 1 + . ID=CGI_10000534; scaffold42 WUBlastX LINE_L2 206167 206547 182 + . . scaffold42 GLEAN mRNA 204584 223955 0.545569 + . ID=CGI_10018912; scaffold42 WUBlastX LINE_L2 206552 206770 142 + . . scaffold42 GLEAN mRNA 204584 223955 0.545569 + . ID=CGI_10018912; scaffold42 WUBlastX LINE_L2 206841 207317 157 + . . scaffold42 GLEAN mRNA 204584 223955 0.545569 + . ID=CGI_10018912; scaffold271 WUBlastX DNA_Academ 188879 189073 22 - . . scaffold271 GLEAN mRNA 188870 219899 0.29689 - . ID=CGI_10024460; scaffold271 WUBlastX DNA_Academ 189203 189589 55 - . . scaffold271 GLEAN mRNA 188870 219899 0.29689 - . ID=CGI_10024460; scaffold288 WUBlastX LINE_L1-Tx1 209609 209740 57 - . . scaffold288 GLEAN mRNA 165543 215886 0.392804 - . ID=CGI_10020660; scaffold481 WUBlastX DNA_TcMar-m44 685678 686607 583 + . . scaffold481 GLEAN mRNA 661200 686862 0.995695 + . ID=CGI_10027232; scaffold733 WUBlastX DNA_TcMar-m44 216318 217247 583 - . . scaffold733 GLEAN mRNA 216063 223733 0.792042 - . ID=CGI_10025867; scaffold733 WUBlastX DNA_TcMar-m44 221317 222246 583 - . . scaffold733 GLEAN mRNA 216063 223733 0.792042 - . ID=CGI_10025867; scaffold1741 WUBlastX DNA_Kolobok 813748 814041 104 - . . scaffold1741 GLEAN mRNA 804296 818884 1 - . ID=CGI_10024052; scaffold1741 WUBlastX DNA_Kolobok 814123 814320 117 - . . scaffold1741 GLEAN mRNA 804296 818884 1 - . ID=CGI_10024052; scaffold1741 WUBlastX DNA_Kolobok 814416 815336 230 - . . scaffold1741 GLEAN mRNA 804296 818884 1 - . ID=CGI_10024052; scaffold1741 WUBlastX DNA_Kolobok 813300 813458 98 - . . scaffold1741 GLEAN mRNA 804296 818884 1 - . ID=CGI_10024052; scaffold950 WUBlastX LINE_CR1-L2 49847 50980 501 + . . scaffold950 GLEAN mRNA 45484 50998 0.326384 + . ID=CGI_10022918; scaffold365 WUBlastX LTR_Pao 253669 253857 29 + . . scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; scaffold451 WUBlastX LTR_Gypsy 66788 67033 43 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold1334 WUBlastX LINE_Penelope 7590 8843 437 + . . scaffold1334 GLEAN mRNA 1383 27081 0.666269 - . ID=CGI_10003403; scaffold1754 WUBlastX LTR_Gypsy 218750 220096 138 + . . scaffold1754 GLEAN mRNA 216741 233286 0.492638 + . ID=CGI_10009584; scaffold1821 WUBlastX LINE_RTE-BovB 171908 172567 441 + . . scaffold1821 GLEAN mRNA 167929 177659 0.681651 - . ID=CGI_10011291; scaffold1497 WUBlastX LINE_RTE-X 39727 40815 318 - . . scaffold1497 GLEAN mRNA 38658 42952 0.927373 + . ID=CGI_10006963; scaffold1497 WUBlastX LINE_RTE-X 40766 41113 204 - . . scaffold1497 GLEAN mRNA 38658 42952 0.927373 + . ID=CGI_10006963; scaffold1579 WUBlastX LINE_RTE-X 325090 325425 63 + . . scaffold1579 GLEAN mRNA 320598 331843 0.999956 + . ID=CGI_10016869; scaffold42924 WUBlastX LINE_L1-Tx1 39629 40861 647 - . . scaffold42924 GLEAN mRNA 34345 67833 0.434676 - . ID=CGI_10008185; scaffold43538 WUBlastX LTR_Gypsy 11738 12730 299 + . . scaffold43538 GLEAN mRNA 10395 14337 0.902653 + . ID=CGI_10010812; scaffold1448 WUBlastX LTR_Pao 217442 219064 712 + . . scaffold1448 GLEAN mRNA 205659 222787 0.97529 + . ID=CGI_10011856; scaffold6 WUBlastX LINE_L1-Tx1 197556 197735 66 + . . scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; scaffold6 WUBlastX LINE_L1-Tx1 197725 198762 251 + . . scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; scaffold6 WUBlastX LINE_L1-Tx1 198954 199322 74 + . . scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; scaffold6 WUBlastX LINE_L1-Tx1 199415 199501 23 + . . scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; scaffold53 WUBlastX DNA_IS4EU 1157473 1157916 405 - . . scaffold53 GLEAN mRNA 1154714 1165146 0.994946 + . ID=CGI_10026702; scaffold53 WUBlastX DNA_IS4EU 1157925 1158461 236 - . . scaffold53 GLEAN mRNA 1154714 1165146 0.994946 + . ID=CGI_10026702; scaffold53 WUBlastX DNA_IS4EU 1158658 1158930 111 - . . scaffold53 GLEAN mRNA 1154714 1165146 0.994946 + . ID=CGI_10026702; scaffold632 WUBlastX LINE_L1-Tx1 483695 484015 219 + . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold632 WUBlastX LINE_L1-Tx1 484036 484575 183 + . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold632 WUBlastX LINE_L1-Tx1 484649 485137 40 + . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold393 WUBlastX LINE_RTE-X 1041466 1041843 223 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold622 WUBlastX LINE_RTE-X 381934 383508 634 + . . scaffold622 GLEAN mRNA 378451 385431 0.999351 + . ID=CGI_10018213; scaffold1401 WUBlastX LINE_RTE-X 4430 4639 38 - . . scaffold1401 GLEAN mRNA 431 6619 0.997038 - . ID=CGI_10001278; scaffold632 WUBlastX LINE_RTE-X 274500 274961 140 + . . scaffold632 GLEAN mRNA 271859 278767 0.999129 + . ID=CGI_10018450; scaffold315 WUBlastX DNA_Harbinger 427660 427821 121 + . . scaffold315 GLEAN mRNA 427034 448129 0.999057 + . ID=CGI_10020426; scaffold847 WUBlastX LTR_DIRS 511905 512156 61 - . . scaffold847 GLEAN mRNA 507894 513184 0.74223 - . ID=CGI_10022280; scaffold433 WUBlastX DNA_P 407836 408825 565 - . . scaffold433 GLEAN mRNA 407360 429733 0.877924 + . ID=CGI_10027068; scaffold43932 WUBlastX DNA_En-Spm 366445 367881 855 - . . scaffold43932 GLEAN mRNA 361197 374116 0.888376 - . ID=CGI_10014131; scaffold557 WUBlastX LINE_L1-Tx1 401993 402940 533 + . . scaffold557 GLEAN mRNA 401528 413927 0.99928 + . ID=CGI_10017980; scaffold557 WUBlastX LINE_L1-Tx1 402925 403446 210 + . . scaffold557 GLEAN mRNA 401528 413927 0.99928 + . ID=CGI_10017980; scaffold557 WUBlastX LINE_L1-Tx1 403446 403691 50 + . . scaffold557 GLEAN mRNA 401528 413927 0.99928 + . ID=CGI_10017980; scaffold363 WUBlastX DNA_Academ 109396 109980 305 - . . scaffold363 GLEAN mRNA 95165 111779 0.789891 - . ID=CGI_10019289; scaffold363 WUBlastX DNA_Academ 111048 111779 388 - . . scaffold363 GLEAN mRNA 95165 111779 0.789891 - . ID=CGI_10019289; scaffold39758 WUBlastX LINE_RTE-BovB 59772 60683 303 - . . scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold39758 WUBlastX LINE_RTE-BovB 62305 62484 131 - . . scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold39758 WUBlastX LINE_RTE-BovB 62484 62645 103 - . . scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold39758 WUBlastX LINE_RTE-BovB 62903 63028 29 - . . scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold39758 WUBlastX LINE_RTE-BovB 63046 63252 37 - . . scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold192 WUBlastX LTR_Pao 553608 553700 41 - . . scaffold192 GLEAN mRNA 531371 556893 0.543544 + . ID=CGI_10023721; scaffold1589 WUBlastX LINE_CR1-L2 882015 882254 32 + . . scaffold1589 GLEAN mRNA 876164 888401 0.863209 - . ID=CGI_10024131; C32318 WUBlastX LINE_L2 7551 7919 63 - . . C32318 GLEAN mRNA 2480 10983 0.999998 + . ID=CGI_10000883; scaffold226 WUBlastX LTR_Gypsy-Cigr 660550 660948 62 - . . scaffold226 GLEAN mRNA 638426 687523 0.559216 + . ID=CGI_10025370; scaffold1673 WUBlastX LTR_Ngaro 87262 87378 72 - . . scaffold1673 GLEAN mRNA 58935 108305 0.828275 + . ID=CGI_10013571; scaffold43878 WUBlastX RC_Helitron 159839 160090 51 + . . scaffold43878 GLEAN mRNA 158446 163606 0.593391 + . ID=CGI_10013720; scaffold43878 WUBlastX RC_Helitron 161026 161112 28 + . . scaffold43878 GLEAN mRNA 158446 163606 0.593391 + . ID=CGI_10013720; scaffold1892 WUBlastX DNA_hAT-Ac 32923 33015 98 + . . scaffold1892 GLEAN mRNA 30429 33530 1 - . ID=CGI_10011305; scaffold128 WUBlastX DNA_IS4EU 60752 60892 58 - . . scaffold128 GLEAN mRNA 54342 63516 0.993133 - . ID=CGI_10021504; scaffold1715 WUBlastX DNA_IS4EU 427905 428045 61 - . . scaffold1715 GLEAN mRNA 426914 428141 0.999981 - . ID=CGI_10019675; scaffold40606 WUBlastX DNA_IS4EU 38314 38643 73 + . . scaffold40606 GLEAN mRNA 38314 38649 0.999372 + . ID=CGI_10004279; scaffold829 WUBlastX LINE_Jockey 530471 530668 25 - . . scaffold829 GLEAN mRNA 525665 533240 0.999107 - . ID=CGI_10021149; scaffold1730 WUBlastX LTR_Gypsy 196819 197097 79 + . . scaffold1730 GLEAN mRNA 195851 199333 0.999676 + . ID=CGI_10012260; scaffold1533 WUBlastX DNA_Harbinger 94262 94432 78 + . . scaffold1533 GLEAN mRNA 91991 98571 1 + . ID=CGI_10012868; scaffold1315 WUBlastX LINE_L1 28230 28406 28 + . . scaffold1315 GLEAN mRNA 24729 31202 0.999612 + . ID=CGI_10021591; scaffold38306 WUBlastX LINE_L1 6325 6369 31 + . . scaffold38306 GLEAN mRNA 6272 12349 0.99842 - . ID=CGI_10002711; scaffold1399 WUBlastX LINE_L1 33397 33723 24 - . . scaffold1399 GLEAN mRNA 16276 39140 0.996608 + . ID=CGI_10007047; scaffold1885 WUBlastX LINE_Penelope 112924 113115 55 - . . scaffold1885 GLEAN mRNA 111510 119560 0.999552 - . ID=CGI_10013898; scaffold1149 WUBlastX DNA_TcMar-Marin 138389 138577 63 + . . scaffold1149 GLEAN mRNA 123566 144809 0.531581 + . ID=CGI_10023452; scaffold226 WUBlastX DNA_TcMar-Marin 1057662 1057877 65 - . . scaffold226 GLEAN mRNA 1050620 1061522 0.99513 - . ID=CGI_10025399; scaffold70 WUBlastX LINE_RTE-X 612953 613387 40 + . . scaffold70 GLEAN mRNA 605933 624830 0.814164 - . ID=CGI_10024778; scaffold421 WUBlastX LINE_RTE-X 187304 187516 61 + . . scaffold421 GLEAN mRNA 182657 200231 1 + . ID=CGI_10012156; scaffold1454 WUBlastX LTR_ERV1 66350 66406 26 - . . scaffold1454 GLEAN mRNA 63589 73088 0.838276 - . ID=CGI_10004314; scaffold1740 WUBlastX DNA_Sola 209811 210110 22 - . . scaffold1740 GLEAN mRNA 208281 211238 0.866192 - . ID=CGI_10011449; scaffold40080 WUBlastX LTR_Ngaro 61612 61962 90 - . . scaffold40080 GLEAN mRNA 45524 71991 0.583639 - . ID=CGI_10003845; scaffold1859 WUBlastX DNA_TcMar-Tc1 75759 76019 64 + . . scaffold1859 GLEAN mRNA 61017 77211 0.980385 - . ID=CGI_10007226; scaffold1859 WUBlastX DNA_TcMar-Tc1 75759 76019 64 + . . scaffold1859 GLEAN mRNA 75586 89334 0.863497 + . ID=CGI_10007227; scaffold77 WUBlastX DNA_Zator 1096521 1096703 52 - . . scaffold77 GLEAN mRNA 1068915 1100683 0.933897 + . ID=CGI_10028019; scaffold43562 WUBlastX LINE_CR1 167014 167130 33 + . . scaffold43562 GLEAN mRNA 166638 176461 0.999676 + . ID=CGI_10011038; scaffold43562 WUBlastX LINE_CR1 167014 167130 33 + . . scaffold43562 GLEAN mRNA 156935 180007 0.944081 - . ID=CGI_10011037; scaffold53 WUBlastX LINE_L2 62273 62692 32 - . . scaffold53 GLEAN mRNA 61535 64675 0.999895 - . ID=CGI_10026648; scaffold1188 WUBlastX LINE_CR1-L2 657104 657283 66 - . . scaffold1188 GLEAN mRNA 648038 660238 0.573951 - . ID=CGI_10025493; scaffold156 WUBlastX LINE_CR1-L2 274820 275104 50 + . . scaffold156 GLEAN mRNA 272710 277708 0.558302 - . ID=CGI_10026489; scaffold517 WUBlastX LINE_Penelope 27745 28110 47 + . . scaffold517 GLEAN mRNA 26711 42046 0.883003 + . ID=CGI_10008977; scaffold42124 WUBlastX LTR_Gypsy 65190 65876 61 + . . scaffold42124 GLEAN mRNA 63234 66153 0.99926 + . ID=CGI_10006232; scaffold599 WUBlastX LTR_Pao 30712 30822 20 + . . scaffold599 GLEAN mRNA 29083 62122 0.696781 + . ID=CGI_10021706; scaffold1445 WUBlastX LINE_L1-Tx1 216414 216788 29 - . . scaffold1445 GLEAN mRNA 215438 231778 0.644744 - . ID=CGI_10010374; scaffold655 WUBlastX LINE_RTE-BovB 312352 312705 60 - . . scaffold655 GLEAN mRNA 288551 322246 0.783926 + . ID=CGI_10014958; scaffold194 WUBlastX LINE_Penelope 92766 93152 66 + . . scaffold194 GLEAN mRNA 88923 103343 0.864939 + . ID=CGI_10011059; scaffold86 WUBlastX DNA_Kolobok-Hyd 1352917 1353276 46 - . . scaffold86 GLEAN mRNA 1350663 1354624 0.5119 - . ID=CGI_10028203; scaffold86 WUBlastX DNA_Kolobok-Hyd 1353470 1353544 33 - . . scaffold86 GLEAN mRNA 1350663 1354624 0.5119 - . ID=CGI_10028203; scaffold1831 WUBlastX LINE_L1 26037 26147 20 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1745 WUBlastX LINE_RTE-X 79271 79618 49 - . . scaffold1745 GLEAN mRNA 77513 92057 0.437746 + . ID=CGI_10005405; scaffold453 WUBlastX DNA_PiggyBac 358128 358226 35 + . . scaffold453 GLEAN mRNA 346906 361240 0.116749 + . ID=CGI_10015050; scaffold44 WUBlastX DNA_Maverick 459615 459920 67 - . . scaffold44 GLEAN mRNA 452829 480659 0.989884 + . ID=CGI_10016842; scaffold43446 WUBlastX LINE_Rex-Babar 161837 162007 49 + . . scaffold43446 GLEAN mRNA 154155 168433 0.907649 - . ID=CGI_10010403; scaffold41740 WUBlastX DNA_Sola 129202 130029 26 - . . scaffold41740 GLEAN mRNA 128935 130074 0.579463 - . ID=CGI_10005589; scaffold41954 WUBlastX LINE_L1-Tx1 103382 103858 24 - . . scaffold41954 GLEAN mRNA 93049 113682 0.989895 + . ID=CGI_10005853; scaffold41954 WUBlastX LINE_L1-Tx1 103382 103858 24 - . . scaffold41954 GLEAN mRNA 103267 126908 0.678183 - . ID=CGI_10005854; scaffold146 WUBlastX LINE_L1-Tx1 641979 642203 45 - . . scaffold146 GLEAN mRNA 638309 652967 0.499837 - . ID=CGI_10024916; scaffold248 WUBlastX LTR_Pao 483327 484067 49 + . . scaffold248 GLEAN mRNA 483285 484196 0.965913 + . ID=CGI_10017238; scaffold451 WUBlastX LTR_Gypsy-Cigr 63260 63817 49 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold39096 WUBlastX LTR_Gypsy 51762 52112 56 + . . scaffold39096 GLEAN mRNA 50582 58209 0.813277 + . ID=CGI_10003149; scaffold35332 WUBlastX LINE_CR1 3781 4032 85 - . . scaffold35332 GLEAN mRNA 3775 4032 0.999372 - . ID=CGI_10001469; scaffold419 WUBlastX LINE_CR1 47959 48150 86 - . . scaffold419 GLEAN mRNA 46988 49900 0.999992 + . ID=CGI_10028319; scaffold828 WUBlastX LINE_L2 53717 53971 76 + . . scaffold828 GLEAN mRNA 15085 78014 0.596994 - . ID=CGI_10007364; scaffold514 WUBlastX LTR_Gypsy 87981 88757 76 + . . scaffold514 GLEAN mRNA 67103 122805 0.383041 - . ID=CGI_10018346; scaffold1149 WUBlastX LINE_L2 85514 85774 24 - . . scaffold1149 GLEAN mRNA 84834 85792 0.593391 - . ID=CGI_10023450; scaffold1788 WUBlastX RC_Helitron 46211 46294 25 - . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold1097 WUBlastX LINE_L1 682613 682774 23 - . . scaffold1097 GLEAN mRNA 671182 687187 0.811238 + . ID=CGI_10024541; scaffold1132 WUBlastX DNA_TcMar-Tc1 210138 210326 27 + . . scaffold1132 GLEAN mRNA 207782 231438 0.973884 - . ID=CGI_10023314; scaffold33924 WUBlastX DNA_MuDR 319 549 48 + . . scaffold33924 GLEAN mRNA 262 597 0.999068 + . ID=CGI_10001172; scaffold586 WUBlastX LINE_RTE-X 178358 178456 49 - . . scaffold586 GLEAN mRNA 158543 182219 0.249413 - . ID=CGI_10018000; scaffold37148 WUBlastX LINE_RTE-BovB 29710 29823 41 + . . scaffold37148 GLEAN mRNA 9385 30637 0.645987 - . ID=CGI_10002291; scaffold313 WUBlastX DNA_En-Spm 614518 614643 74 - . . scaffold313 GLEAN mRNA 612366 622273 0.647784 - . ID=CGI_10026614; scaffold1093 WUBlastX DNA_Sola 424716 425009 65 + . . scaffold1093 GLEAN mRNA 421292 452469 0.981582 + . ID=CGI_10019808; scaffold917 WUBlastX LINE_CR1-L2 162075 162368 98 + . . scaffold917 GLEAN mRNA 150992 179733 0.207364 - . ID=CGI_10011084; scaffold1673 WUBlastX LTR_Gypsy-Cigr 53688 54020 89 - . . scaffold1673 GLEAN mRNA 51832 54257 0.720264 - . ID=CGI_10013570; scaffold40680 WUBlastX LTR_Copia 35810 36535 92 + . . scaffold40680 GLEAN mRNA 16 36776 0.246623 - . ID=CGI_10004353; scaffold1017 WUBlastX DNA_hAT 781080 781292 57 + . . scaffold1017 GLEAN mRNA 781053 782982 0.991247 + . ID=CGI_10025027; scaffold1017 WUBlastX DNA_hAT 781882 782343 24 + . . scaffold1017 GLEAN mRNA 781053 782982 0.991247 + . ID=CGI_10025027; scaffold419 WUBlastX LINE_CR1 1269988 1270137 64 - . . scaffold419 GLEAN mRNA 1266298 1276946 0.922495 + . ID=CGI_10028402; scaffold413 WUBlastX LTR_Ngaro 143385 143561 106 - . . scaffold413 GLEAN mRNA 138311 158515 0.482983 + . ID=CGI_10022796; scaffold501 WUBlastX LTR_Ngaro 928098 928394 96 - . . scaffold501 GLEAN mRNA 928095 928403 0.733495 - . ID=CGI_10027537; scaffold1084 WUBlastX LTR_ERV1 37334 37420 36 + . . scaffold1084 GLEAN mRNA 31266 40802 0.801676 + . ID=CGI_10010075; scaffold42770 WUBlastX DNA_Harbinger 53330 53608 88 + . . scaffold42770 GLEAN mRNA 53297 53668 0.618185 + . ID=CGI_10007689; scaffold1004 WUBlastX DNA_IS4EU 10605 11345 100 + . . scaffold1004 GLEAN mRNA 10032 23372 0.57306 + . ID=CGI_10020759; scaffold1004 WUBlastX DNA_IS4EU 10605 11345 100 + . . scaffold1004 GLEAN mRNA 10170 36067 1 - . ID=CGI_10020760; scaffold1671 WUBlastX RC_Helitron 227283 227456 98 + . . scaffold1671 GLEAN mRNA 221124 227498 0.633477 + . ID=CGI_10015147; scaffold601 WUBlastX LINE_L2 1201024 1201034 47 + . . scaffold601 GLEAN mRNA 1201024 1226827 0.805376 - . ID=CGI_10026861; scaffold422 WUBlastX LINE_RTE-X 189465 189770 27 - . . scaffold422 GLEAN mRNA 175950 190221 0.980281 + . ID=CGI_10018798; scaffold422 WUBlastX LINE_RTE-X 189784 189939 59 - . . scaffold422 GLEAN mRNA 175950 190221 0.980281 + . ID=CGI_10018798; C29438 WUBlastX LINE_RTE-X 2486 2695 84 + . . C29438 GLEAN mRNA 533 5889 1 + . ID=CGI_10000534; scaffold986 WUBlastX LINE_RTE-X 232752 233096 21 - . . scaffold986 GLEAN mRNA 229802 234961 0.889891 - . ID=CGI_10009965; scaffold1136 WUBlastX LINE_RTE-X 46801 46854 20 + . . scaffold1136 GLEAN mRNA 45613 63125 0.999895 + . ID=CGI_10003080; scaffold1800 WUBlastX LINE_L1-Tx1 32523 32945 68 - . . scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; scaffold1800 WUBlastX LINE_CR1-L2 262189 262302 21 - . . scaffold1800 GLEAN mRNA 251153 263258 0.999949 - . ID=CGI_10016404; scaffold241 WUBlastX LTR_DIRS 64967 65230 28 - . . scaffold241 GLEAN mRNA 57268 78429 0.9966 + . ID=CGI_10025090; scaffold1719 WUBlastX LTR_Ngaro 198439 198582 38 - . . scaffold1719 GLEAN mRNA 177172 199114 0.99732 - . ID=CGI_10014281; scaffold1719 WUBlastX LTR_Ngaro 198627 198857 60 - . . scaffold1719 GLEAN mRNA 177172 199114 0.99732 - . ID=CGI_10014281; scaffold203 WUBlastX DNA_TcMar-Marin 112302 112457 92 - . . scaffold203 GLEAN mRNA 85709 116665 0.258685 + . ID=CGI_10021064; scaffold38974 WUBlastX DNA_Kolobok 20717 20884 53 - . . scaffold38974 GLEAN mRNA 18623 32076 0.703347 + . ID=CGI_10003119; scaffold422 WUBlastX LINE_RTE-X 185389 185700 45 - . . scaffold422 GLEAN mRNA 175950 190221 0.980281 + . ID=CGI_10018798; scaffold422 WUBlastX LINE_RTE-X 186179 186307 24 - . . scaffold422 GLEAN mRNA 175950 190221 0.980281 + . ID=CGI_10018798; scaffold70 WUBlastX LINE_RTE-X 515514 515606 34 - . . scaffold70 GLEAN mRNA 505766 521255 0.349382 + . ID=CGI_10024775; scaffold70 WUBlastX LINE_RTE-X 515514 515606 34 - . . scaffold70 GLEAN mRNA 501356 529120 0.998611 - . ID=CGI_10024774; scaffold419 WUBlastX LINE_RTE-BovB 252230 252511 41 + . . scaffold419 GLEAN mRNA 243081 266501 0.999183 - . ID=CGI_10028337; scaffold1532 WUBlastX DNA_PiggyBac 606840 607175 68 - . . scaffold1532 GLEAN mRNA 606606 610636 0.502786 - . ID=CGI_10028261; scaffold683 WUBlastX LINE_RTE-X 193580 193912 54 - . . scaffold683 GLEAN mRNA 156724 197942 0.700222 + . ID=CGI_10010360; scaffold38510 WUBlastX DNA_TcMar-Tc1 20690 20794 24 - . . scaffold38510 GLEAN mRNA 7470 20879 0.242516 - . ID=CGI_10002810; scaffold38510 WUBlastX DNA_TcMar-Tc1 20690 20794 24 - . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold1164 WUBlastX LINE_L1-Tx1 309381 309737 67 - . . scaffold1164 GLEAN mRNA 307222 312085 0.957199 - . ID=CGI_10013011; scaffold43064 WUBlastX LINE_L1-Tx1 184473 184664 24 + . . scaffold43064 GLEAN mRNA 165128 188165 0.499838 + . ID=CGI_10008633; scaffold41732 WUBlastX LINE_L1-Tx1 59573 59674 22 - . . scaffold41732 GLEAN mRNA 19646 61723 0.444801 - . ID=CGI_10005478; scaffold790 WUBlastX LINE_L2 240851 241231 72 - . . scaffold790 GLEAN mRNA 239122 257283 0.83657 + . ID=CGI_10013172; scaffold1785 WUBlastX LINE_CR1 544242 544427 62 + . . scaffold1785 GLEAN mRNA 522476 550245 0.457905 + . ID=CGI_10024389; scaffold773 WUBlastX LINE_L2 150710 150892 40 + . . scaffold773 GLEAN mRNA 136190 154303 0.840493 - . ID=CGI_10011344; scaffold168 WUBlastX DNA_hAT 863449 864738 26 - . . scaffold168 GLEAN mRNA 863089 864738 1 - . ID=CGI_10025616; scaffold1188 WUBlastX LTR_Gypsy 175477 176370 129 - . . scaffold1188 GLEAN mRNA 159311 176924 0.555609 - . ID=CGI_10025460; scaffold1672 WUBlastX LTR_Gypsy 57713 57772 20 + . . scaffold1672 GLEAN mRNA 57333 81461 0.999231 + . ID=CGI_10004942; scaffold43932 WUBlastX DNA_TcMar-Tc2 192630 192917 40 + . . scaffold43932 GLEAN mRNA 184217 200506 0.993526 + . ID=CGI_10014122; scaffold143 WUBlastX LINE_L1 190207 190596 57 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold591 WUBlastX DNA_PiggyBac 727314 727454 50 + . . scaffold591 GLEAN mRNA 721166 806574 0.987378 - . ID=CGI_10027581; scaffold546 WUBlastX LINE_L2 144432 145430 29 + . . scaffold546 GLEAN mRNA 136572 153074 0.999871 - . ID=CGI_10020995; scaffold370 WUBlastX LINE_RTE-X 188290 188448 67 - . . scaffold370 GLEAN mRNA 169419 194648 0.857316 - . ID=CGI_10025527; scaffold370 WUBlastX LINE_RTE-X 188534 188707 25 - . . scaffold370 GLEAN mRNA 169419 194648 0.857316 - . ID=CGI_10025527; scaffold1639 WUBlastX DNA_TcMar-Tc1 37584 37826 120 + . . scaffold1639 GLEAN mRNA 27466 42582 0.863535 + . ID=CGI_10005437; scaffold790 WUBlastX LINE_L2 240671 241042 130 - . . scaffold790 GLEAN mRNA 239122 257283 0.83657 + . ID=CGI_10013172; scaffold1244 WUBlastX LTR_Gypsy 127405 128175 110 - . . scaffold1244 GLEAN mRNA 121009 134472 0.646055 + . ID=CGI_10020823; C35282 WUBlastX LTR_Gypsy 2009 2557 92 + . . C35282 GLEAN mRNA 1142 2704 0.999228 + . ID=CGI_10001456; scaffold38058 WUBlastX LTR_Gypsy 5497 5940 31 - . . scaffold38058 GLEAN mRNA 3486 8173 0.999159 - . ID=CGI_10002595; scaffold1024 WUBlastX DNA_Kolobok 295830 296171 101 - . . scaffold1024 GLEAN mRNA 286016 307543 0.666664 - . ID=CGI_10028532; scaffold43244 WUBlastX RC_Helitron 213966 214325 122 - . . scaffold43244 GLEAN mRNA 204787 215070 0.744209 - . ID=CGI_10009617; scaffold138 WUBlastX LINE_L1-Tx1 26233 26649 96 - . . scaffold138 GLEAN mRNA 800 34081 0.879441 + . ID=CGI_10008423; scaffold1164 WUBlastX LINE_L1-Tx1 309381 309674 97 - . . scaffold1164 GLEAN mRNA 307222 312085 0.957199 - . ID=CGI_10013011; scaffold1350 WUBlastX LINE_L1-Tx1 149035 149661 23 + . . scaffold1350 GLEAN mRNA 148503 161084 1 - . ID=CGI_10017301; scaffold39476 WUBlastX LTR_Gypsy 49869 50138 103 + . . scaffold39476 GLEAN mRNA 49505 51682 1 + . ID=CGI_10002876; scaffold547 WUBlastX LTR_Gypsy 454083 454664 114 + . . scaffold547 GLEAN mRNA 453649 455262 0.872777 + . ID=CGI_10018858; scaffold1426 WUBlastX DNA_hAT-Tip100 5871 6380 61 + . . scaffold1426 GLEAN mRNA 415 27976 0.990953 - . ID=CGI_10003025; scaffold38854 WUBlastX DNA_Harbinger 19353 19715 102 + . . scaffold38854 GLEAN mRNA 17499 20462 0.835209 + . ID=CGI_10003011; scaffold172 WUBlastX DNA_TcMar-Marin 180769 181245 77 - . . scaffold172 GLEAN mRNA 172027 190586 0.544386 + . ID=CGI_10013522; scaffold1117 WUBlastX LINE_L1-Tx1 11980 12648 76 - . . scaffold1117 GLEAN mRNA 11683 14467 0.793024 + . ID=CGI_10002970; scaffold1605 WUBlastX DNA_hAT 731702 732067 122 - . . scaffold1605 GLEAN mRNA 696278 739510 0.673314 - . ID=CGI_10023387; scaffold12 WUBlastX LTR_Gypsy 294404 294574 23 - . . scaffold12 GLEAN mRNA 290334 319375 0.793549 - . ID=CGI_10018039; scaffold257 WUBlastX LTR_DIRS 1604480 1604971 38 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold448 WUBlastX LTR_DIRS? 27391 27705 135 - . . scaffold448 GLEAN mRNA 15813 30397 0.727338 + . ID=CGI_10024928; scaffold1831 WUBlastX LINE_L2 25619 25807 38 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold288 WUBlastX DNA_Harbinger 207804 208109 121 - . . scaffold288 GLEAN mRNA 165543 215886 0.392804 - . ID=CGI_10020660; C35840 WUBlastX DNA_Harbinger 712 825 46 - . . C35840 GLEAN mRNA 655 3933 0.500738 - . ID=CGI_10001630; scaffold34942 WUBlastX DNA_Kolobok 10817 10957 38 + . . scaffold34942 GLEAN mRNA 4327 15160 0.738571 - . ID=CGI_10001379; scaffold34942 WUBlastX DNA_Kolobok 10817 10957 38 + . . scaffold34942 GLEAN mRNA 10169 10981 1 + . ID=CGI_10001380; scaffold38272 WUBlastX LINE_L1 39386 39784 44 + . . scaffold38272 GLEAN mRNA 12040 52169 0.605388 + . ID=CGI_10002702; scaffold126 WUBlastX DNA_MuDR 579734 580051 64 + . . scaffold126 GLEAN mRNA 576864 580670 0.999598 + . ID=CGI_10019200; scaffold43242 WUBlastX DNA_TcMar-Tc1 28617 28769 50 + . . scaffold43242 GLEAN mRNA 27154 33595 0.878599 + . ID=CGI_10009544; scaffold743 WUBlastX LINE_Tad1? 108226 108909 66 - . . scaffold743 GLEAN mRNA 83791 109134 0.449406 + . ID=CGI_10008614; scaffold1503 WUBlastX LINE_RTE-BovB 227255 227455 123 + . . scaffold1503 GLEAN mRNA 219416 230128 0.776193 - . ID=CGI_10009541; scaffold266 WUBlastX LINE_RTE-X 245952 246284 96 - . . scaffold266 GLEAN mRNA 236877 257451 0.649405 - . ID=CGI_10013355; scaffold1024 WUBlastX DNA_TcMar-Tc1 222421 222519 34 - . . scaffold1024 GLEAN mRNA 191784 246938 0.99909 + . ID=CGI_10028528; scaffold1066 WUBlastX LTR_Gypsy 170263 170712 190 + . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold54 WUBlastX LTR_Gypsy 80470 80832 65 + . . scaffold54 GLEAN mRNA 79485 84388 0.939929 + . ID=CGI_10023654; scaffold162 WUBlastX LTR_Gypsy 270808 271023 127 - . . scaffold162 GLEAN mRNA 254328 277132 0.643433 - . ID=CGI_10014094; scaffold1788 WUBlastX LINE_CR1-L2 17987 18955 606 + . . scaffold1788 GLEAN mRNA 1232 23874 0.618655 + . ID=CGI_10019910; scaffold274 WUBlastX LTR_Gypsy 120699 121241 268 - . . scaffold274 GLEAN mRNA 114872 127603 0.900499 - . ID=CGI_10017014; scaffold274 WUBlastX LTR_Gypsy 120699 121241 268 - . . scaffold274 GLEAN mRNA 110645 138083 0.999675 + . ID=CGI_10017013; scaffold1700 WUBlastX DNA_Academ 9852 10031 43 + . . scaffold1700 GLEAN mRNA 3279 10052 0.943718 + . ID=CGI_10012800; scaffold1700 WUBlastX DNA_Academ 10028 10052 357 + . . scaffold1700 GLEAN mRNA 3279 10052 0.943718 + . ID=CGI_10012800; scaffold241 WUBlastX LTR_DIRS 63742 63855 58 - . . scaffold241 GLEAN mRNA 57268 78429 0.9966 + . ID=CGI_10025090; scaffold241 WUBlastX LTR_DIRS 63855 64793 455 - . . scaffold241 GLEAN mRNA 57268 78429 0.9966 + . ID=CGI_10025090; scaffold241 WUBlastX LTR_DIRS 64770 64916 39 - . . scaffold241 GLEAN mRNA 57268 78429 0.9966 + . ID=CGI_10025090; scaffold241 WUBlastX LTR_DIRS 64913 65188 139 - . . scaffold241 GLEAN mRNA 57268 78429 0.9966 + . ID=CGI_10025090; scaffold241 WUBlastX LTR_DIRS 65337 65849 189 - . . scaffold241 GLEAN mRNA 57268 78429 0.9966 + . ID=CGI_10025090; scaffold576 WUBlastX DNA_Academ 493629 493895 62 - . . scaffold576 GLEAN mRNA 477083 499129 0.277546 - . ID=CGI_10018784; scaffold576 WUBlastX DNA_Academ 493918 494013 30 - . . scaffold576 GLEAN mRNA 477083 499129 0.277546 - . ID=CGI_10018784; scaffold1360 WUBlastX LINE_RTE-X 734374 734751 144 - . . scaffold1360 GLEAN mRNA 732870 739512 0.95405 + . ID=CGI_10022670; scaffold343 WUBlastX LINE_RTE-BovB 646743 646778 22 - . . scaffold343 GLEAN mRNA 643828 662585 1 - . ID=CGI_10021771; scaffold1671 WUBlastX LINE_RTE-BovB 310559 311035 93 - . . scaffold1671 GLEAN mRNA 303116 311549 0.243132 + . ID=CGI_10015154; scaffold1705 WUBlastX LINE_RTE-BovB 177890 178147 79 + . . scaffold1705 GLEAN mRNA 168554 181759 0.810172 - . ID=CGI_10007474; scaffold43634 WUBlastX DNA_Maverick 71539 71787 97 + . . scaffold43634 GLEAN mRNA 56957 73985 0.67193 + . ID=CGI_10011531; scaffold43634 WUBlastX DNA_Maverick 71832 71984 69 + . . scaffold43634 GLEAN mRNA 56957 73985 0.67193 + . ID=CGI_10011531; scaffold41598 WUBlastX DNA_PiggyBac 66865 67101 51 - . . scaffold41598 GLEAN mRNA 59426 74794 0.449575 - . ID=CGI_10005304; scaffold1009 WUBlastX LINE_RTE-X 1225837 1226280 93 - . . scaffold1009 GLEAN mRNA 1197147 1238817 0.350484 + . ID=CGI_10028788; scaffold1869 WUBlastX DNA_Sola 15544 15834 122 + . . scaffold1869 GLEAN mRNA 8009 37015 0.526029 - . ID=CGI_10009011; scaffold1869 WUBlastX DNA_Sola 15544 15834 122 + . . scaffold1869 GLEAN mRNA 11164 16956 0.999984 + . ID=CGI_10009012; scaffold1597 WUBlastX DNA_hAT-Tip100 2304 3287 147 - . . scaffold1597 GLEAN mRNA 296 3638 1 - . ID=CGI_10011762; scaffold1186 WUBlastX LTR_Gypsy 210646 210921 64 + . . scaffold1186 GLEAN mRNA 187396 222353 0.578632 + . ID=CGI_10010597; scaffold1138 WUBlastX DNA_En-Spm 275017 275997 644 + . . scaffold1138 GLEAN mRNA 273468 292780 0.221988 + . ID=CGI_10015375; scaffold1138 WUBlastX DNA_En-Spm 275952 276137 61 + . . scaffold1138 GLEAN mRNA 273468 292780 0.221988 + . ID=CGI_10015375; scaffold3 WUBlastX LINE_CR1-L2 670070 670255 109 + . . scaffold3 GLEAN mRNA 666595 677011 1 + . ID=CGI_10027296; scaffold40556 WUBlastX LTR_Gypsy 12230 12841 170 + . . scaffold40556 GLEAN mRNA 9810 16493 0.715629 - . ID=CGI_10004250; scaffold853 WUBlastX LTR_Gypsy 449961 450677 93 - . . scaffold853 GLEAN mRNA 448693 455013 0.999949 - . ID=CGI_10017517; scaffold37712 WUBlastX LTR_Gypsy 35907 36056 22 + . . scaffold37712 GLEAN mRNA 15194 37462 0.403354 - . ID=CGI_10002463; scaffold43388 WUBlastX DNA_IS4EU 217320 218186 100 + . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold536 WUBlastX LINE_RTE-X 86189 86617 50 - . . scaffold536 GLEAN mRNA 68482 93233 0.999348 + . ID=CGI_10006670; scaffold498 WUBlastX DNA_En-Spm 113776 115821 1029 - . . scaffold498 GLEAN mRNA 111798 119002 0.999546 - . ID=CGI_10012422; scaffold406 WUBlastX LTR_Gypsy 133980 134405 85 + . . scaffold406 GLEAN mRNA 128241 151323 0.854188 - . ID=CGI_10023840; scaffold1104 WUBlastX LINE_RTE-X 165090 165974 403 + . . scaffold1104 GLEAN mRNA 162897 187197 0.499418 + . ID=CGI_10020361; scaffold210 WUBlastX DNA_Crypton 427104 427439 104 + . . scaffold210 GLEAN mRNA 426681 440258 0.999993 - . ID=CGI_10015907; scaffold1244 WUBlastX LTR_ERV1 124432 124518 28 - . . scaffold1244 GLEAN mRNA 121009 134472 0.646055 + . ID=CGI_10020823; scaffold42144 WUBlastX LINE_RTE-X 124336 124779 118 + . . scaffold42144 GLEAN mRNA 104437 125325 0.993907 - . ID=CGI_10006248; scaffold37006 WUBlastX LINE_CR1-L2 31501 33852 831 - . . scaffold37006 GLEAN mRNA 18201 34112 0.554997 + . ID=CGI_10002223; scaffold213 WUBlastX DNA_Maverick 172887 173165 119 - . . scaffold213 GLEAN mRNA 155081 183799 0.877289 - . ID=CGI_10007552; scaffold6 WUBlastX LTR_Pao 129567 130256 241 + . . scaffold6 GLEAN mRNA 120164 144778 0.978215 - . ID=CGI_10022297; scaffold40282 WUBlastX LTR_Gypsy 74222 75085 233 - . . scaffold40282 GLEAN mRNA 56091 83549 0.539379 + . ID=CGI_10004002; scaffold40282 WUBlastX LTR_Gypsy 77290 77700 44 - . . scaffold40282 GLEAN mRNA 56091 83549 0.539379 + . ID=CGI_10004002; scaffold534 WUBlastX LTR_ERV1 67151 67840 97 - . . scaffold534 GLEAN mRNA 66095 75550 0.716363 + . ID=CGI_10005164; scaffold43396 WUBlastX LTR_Ngaro 235412 235585 24 - . . scaffold43396 GLEAN mRNA 229822 241717 0.993815 + . ID=CGI_10010156; scaffold44 WUBlastX DNA_IS4EU 349361 350560 109 - . . scaffold44 GLEAN mRNA 346940 353357 0.748127 - . ID=CGI_10016836; scaffold1 WUBlastX DNA_Harbinger 266956 267147 54 - . . scaffold1 GLEAN mRNA 264014 267684 0.995923 + . ID=CGI_10013474; scaffold211 WUBlastX LINE_L1-Tx1 699478 699846 143 + . . scaffold211 GLEAN mRNA 691120 715917 0.0754063 + . ID=CGI_10026960; scaffold432 WUBlastX LINE_L2 245315 247345 784 - . . scaffold432 GLEAN mRNA 235322 257919 0.999925 + . ID=CGI_10023091; scaffold189 WUBlastX LTR_Gypsy 35207 37165 1241 - . . scaffold189 GLEAN mRNA 16396 38520 0.48054 + . ID=CGI_10018663; scaffold39268 WUBlastX DNA_En-Spm 49476 50585 441 - . . scaffold39268 GLEAN mRNA 37983 58849 0.736622 - . ID=CGI_10003275; scaffold39268 WUBlastX DNA_En-Spm 50564 51769 819 - . . scaffold39268 GLEAN mRNA 37983 58849 0.736622 - . ID=CGI_10003275; scaffold43842 WUBlastX LINE_RTE-X 218788 219501 151 - . . scaffold43842 GLEAN mRNA 211525 222543 0.557237 - . ID=CGI_10013105; scaffold43842 WUBlastX LINE_RTE-X 219879 220829 643 - . . scaffold43842 GLEAN mRNA 211525 222543 0.557237 - . ID=CGI_10013105; scaffold43842 WUBlastX LINE_RTE-X 221138 221485 100 - . . scaffold43842 GLEAN mRNA 211525 222543 0.557237 - . ID=CGI_10013105; scaffold43842 WUBlastX LINE_RTE-X 221538 222101 182 - . . scaffold43842 GLEAN mRNA 211525 222543 0.557237 - . ID=CGI_10013105; scaffold40282 WUBlastX LTR_Gypsy 73847 74188 100 - . . scaffold40282 GLEAN mRNA 56091 83549 0.539379 + . ID=CGI_10004002; scaffold847 WUBlastX LTR_Gypsy 598299 598664 57 - . . scaffold847 GLEAN mRNA 588396 606136 0.840326 - . ID=CGI_10022283; scaffold1244 WUBlastX LTR_Gypsy 123309 123623 95 - . . scaffold1244 GLEAN mRNA 121009 134472 0.646055 + . ID=CGI_10020823; scaffold35406 WUBlastX RC_Helitron 13297 13353 24 + . . scaffold35406 GLEAN mRNA 1505 18996 0.688101 - . ID=CGI_10001499; scaffold616 WUBlastX DNA_PiggyBac 407479 407826 181 - . . scaffold616 GLEAN mRNA 405918 425935 0.924853 - . ID=CGI_10015408; scaffold113 WUBlastX LINE_L1-Tx1 252586 253209 132 - . . scaffold113 GLEAN mRNA 246298 256285 1 - . ID=CGI_10021289; scaffold213 WUBlastX DNA_Maverick 171846 172484 100 - . . scaffold213 GLEAN mRNA 155081 183799 0.877289 - . ID=CGI_10007552; scaffold301 WUBlastX LINE_RTE-X 557787 558662 536 - . . scaffold301 GLEAN mRNA 557742 558662 0.999999 - . ID=CGI_10026724; scaffold655 WUBlastX LINE_L1-Tx1 208155 210845 1239 + . . scaffold655 GLEAN mRNA 206640 213790 0.998219 + . ID=CGI_10014952; scaffold962 WUBlastX LINE_CR1-L2 748152 748316 24 + . . scaffold962 GLEAN mRNA 737761 749184 0.279681 - . ID=CGI_10027664; scaffold1588 WUBlastX LINE_RTE-X 75733 75921 41 + . . scaffold1588 GLEAN mRNA 56027 117187 0.840099 - . ID=CGI_10014772; scaffold150 WUBlastX LINE_CR1-L2 1610649 1611221 110 + . . scaffold150 GLEAN mRNA 1609311 1613969 0.550073 + . ID=CGI_10028691; scaffold1498 WUBlastX LINE_L2 2101 2577 97 - . . scaffold1498 GLEAN mRNA 115 13249 0.844003 + . ID=CGI_10004755; scaffold392 WUBlastX LINE_L2 444509 445024 175 + . . scaffold392 GLEAN mRNA 426913 455766 0.44936 + . ID=CGI_10024218; scaffold1599 WUBlastX LTR_Gypsy 214887 215636 196 + . . scaffold1599 GLEAN mRNA 204689 219809 0.999676 - . ID=CGI_10027141; scaffold38458 WUBlastX DNA_Harbinger 52861 53226 123 + . . scaffold38458 GLEAN mRNA 38002 56000 0.84332 + . ID=CGI_10002784; scaffold38458 WUBlastX DNA_Harbinger 53846 53965 107 + . . scaffold38458 GLEAN mRNA 38002 56000 0.84332 + . ID=CGI_10002784; scaffold128 WUBlastX LINE_RTE-X 122299 122802 112 + . . scaffold128 GLEAN mRNA 119795 124529 0.290216 - . ID=CGI_10021509; scaffold43038 WUBlastX LINE_RTE-X 97316 98347 77 - . . scaffold43038 GLEAN mRNA 85348 101738 0.999351 - . ID=CGI_10008443; scaffold43038 WUBlastX LINE_RTE-X 97316 98347 77 - . . scaffold43038 GLEAN mRNA 95367 105637 0.999027 + . ID=CGI_10008444; scaffold535 WUBlastX LTR_Gypsy 558487 558741 49 + . . scaffold535 GLEAN mRNA 556071 562996 0.477113 + . ID=CGI_10020299; scaffold150 WUBlastX LINE_CR1-L2 1610649 1611575 48 + . . scaffold150 GLEAN mRNA 1609311 1613969 0.550073 + . ID=CGI_10028691; scaffold1737 WUBlastX LINE_RTE-X 462205 462408 105 - . . scaffold1737 GLEAN mRNA 447854 462520 0.999999 + . ID=CGI_10018255; scaffold43842 WUBlastX LINE_RTE-BovB 66542 66853 186 - . . scaffold43842 GLEAN mRNA 64643 69888 1 + . ID=CGI_10013097; scaffold41372 WUBlastX LINE_L1 71936 72502 97 - . . scaffold41372 GLEAN mRNA 67893 79286 0.261998 + . ID=CGI_10005012; scaffold1473 WUBlastX LINE_L2 18668 18952 90 - . . scaffold1473 GLEAN mRNA 13162 33966 0.99911 + . ID=CGI_10003509; scaffold40794 WUBlastX DNA_Kolobok-IS4 24785 25438 212 + . . scaffold40794 GLEAN mRNA 13820 26649 0.999201 - . ID=CGI_10004495; scaffold241 WUBlastX LTR_Pao 83866 84141 194 + . . scaffold241 GLEAN mRNA 81964 102317 0.534439 + . ID=CGI_10025091; scaffold257 WUBlastX LTR_DIRS 1606221 1606532 112 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold1334 WUBlastX LINE_Penelope 9544 9726 44 + . . scaffold1334 GLEAN mRNA 1383 27081 0.666269 - . ID=CGI_10003403; scaffold41242 WUBlastX LINE_L1 100543 100953 28 + . . scaffold41242 GLEAN mRNA 97496 109439 0.170639 - . ID=CGI_10004889; scaffold1179 WUBlastX LINE_L1-Tx1 1213256 1214002 87 + . . scaffold1179 GLEAN mRNA 1211321 1215235 0.457085 - . ID=CGI_10027415; scaffold37430 WUBlastX LTR_Pao 41134 41742 142 - . . scaffold37430 GLEAN mRNA 25525 41907 0.539363 + . ID=CGI_10002358; scaffold1024 WUBlastX LTR_Gypsy 989733 989852 23 + . . scaffold1024 GLEAN mRNA 986108 994171 0.999235 - . ID=CGI_10028555; scaffold1779 WUBlastX DNA_Harbinger 25733 26212 212 - . . scaffold1779 GLEAN mRNA 25311 28509 0.999221 - . ID=CGI_10001860; scaffold858 WUBlastX LINE_Jockey 16894 16944 20 - . . scaffold858 GLEAN mRNA 10847 22761 0.93008 - . ID=CGI_10004935; scaffold39858 WUBlastX LTR_Pao 72154 72459 286 - . . scaffold39858 GLEAN mRNA 65424 78749 0.99005 + . ID=CGI_10003660; scaffold514 WUBlastX LTR_Gypsy 456420 456998 172 - . . scaffold514 GLEAN mRNA 444665 473776 0.661186 - . ID=CGI_10018365; scaffold833 WUBlastX LINE_L1-Tx1 467279 467980 62 - . . scaffold833 GLEAN mRNA 463710 469468 0.999591 - . ID=CGI_10016746; scaffold1174 WUBlastX LINE_CR1-L2 140519 141031 185 - . . scaffold1174 GLEAN mRNA 122742 144408 0.527772 + . ID=CGI_10026027; scaffold917 WUBlastX DNA_Harbinger 154104 154217 122 + . . scaffold917 GLEAN mRNA 150992 179733 0.207364 - . ID=CGI_10011084; scaffold917 WUBlastX DNA_Harbinger 154620 154829 134 + . . scaffold917 GLEAN mRNA 150992 179733 0.207364 - . ID=CGI_10011084; scaffold917 WUBlastX DNA_Harbinger 155076 155267 54 + . . scaffold917 GLEAN mRNA 150992 179733 0.207364 - . ID=CGI_10011084; scaffold113 WUBlastX DNA_MuDR 589623 590009 104 - . . scaffold113 GLEAN mRNA 582017 590807 0.980826 - . ID=CGI_10021294; scaffold580 WUBlastX DNA_Harbinger 549386 549979 224 + . . scaffold580 GLEAN mRNA 548794 565173 0.999676 + . ID=CGI_10020516; scaffold578 WUBlastX DNA_TcMar-Tc1 340464 341045 248 + . . scaffold578 GLEAN mRNA 339528 348737 0.999218 - . ID=CGI_10015129; scaffold374 WUBlastX DNA_hAT-Tip100 166335 166550 58 - . . scaffold374 GLEAN mRNA 164183 170659 0.970084 - . ID=CGI_10018719; scaffold374 WUBlastX DNA_hAT-Tip100 166640 166855 102 - . . scaffold374 GLEAN mRNA 164183 170659 0.970084 - . ID=CGI_10018719; scaffold288 WUBlastX LINE_L1-Tx1 136387 137262 29 - . . scaffold288 GLEAN mRNA 119793 142586 0.674065 - . ID=CGI_10020658; scaffold288 WUBlastX LINE_L1-Tx1 137388 137627 122 - . . scaffold288 GLEAN mRNA 119793 142586 0.674065 - . ID=CGI_10020658; scaffold6 WUBlastX LTR_Pao 126238 127434 474 + . . scaffold6 GLEAN mRNA 120164 144778 0.978215 - . ID=CGI_10022297; scaffold1189 WUBlastX LINE_L1 635440 635721 56 - . . scaffold1189 GLEAN mRNA 632624 639695 1 - . ID=CGI_10023828; scaffold36462 WUBlastX LINE_RTE-X 20268 20450 127 - . . scaffold36462 GLEAN mRNA 15214 26775 0.999351 - . ID=CGI_10001929; scaffold1754 WUBlastX LINE_L1 128608 129066 133 + . . scaffold1754 GLEAN mRNA 124608 131066 0.788238 + . ID=CGI_10009580; scaffold1665 WUBlastX LINE_RTE-X 415513 415872 123 + . . scaffold1665 GLEAN mRNA 414201 417723 0.990268 - . ID=CGI_10015218; scaffold1343 WUBlastX DNA_Maverick 100053 100784 194 + . . scaffold1343 GLEAN mRNA 94192 115140 0.999675 + . ID=CGI_10005048; scaffold413 WUBlastX LINE_L1 10977 11804 190 - . . scaffold413 GLEAN mRNA 9716 19114 0.940957 - . ID=CGI_10022791; scaffold1062 WUBlastX LINE_CR1 8793 9104 152 + . . scaffold1062 GLEAN mRNA 7819 14088 0.462682 - . ID=CGI_10005737; scaffold1715 WUBlastX LINE_L2 570432 570659 130 + . . scaffold1715 GLEAN mRNA 550177 572188 0.407691 + . ID=CGI_10019686; scaffold1715 WUBlastX LINE_L2 570984 571172 53 + . . scaffold1715 GLEAN mRNA 550177 572188 0.407691 + . ID=CGI_10019686; scaffold1866 WUBlastX LINE_CR1-L2 224943 225191 86 + . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold97 WUBlastX LINE_L1-Tx1 80830 81444 140 + . . scaffold97 GLEAN mRNA 72894 92330 0.60683 - . ID=CGI_10005686; scaffold1307 WUBlastX LTR_Gypsy-Cigr 331868 332767 356 + . . scaffold1307 GLEAN mRNA 323239 332767 0.901731 + . ID=CGI_10023754; scaffold43878 WUBlastX DNA_Kolobok 64474 64704 39 + . . scaffold43878 GLEAN mRNA 63246 64902 0.999414 + . ID=CGI_10013712; scaffold39974 WUBlastX LTR_Ngaro 69863 70363 346 + . . scaffold39974 GLEAN mRNA 67732 80297 0.969362 + . ID=CGI_10003760; scaffold1180 WUBlastX LTR_DIRS 24209 24349 66 + . . scaffold1180 GLEAN mRNA 13672 45655 0.485788 + . ID=CGI_10005979; scaffold1180 WUBlastX LTR_DIRS 25043 25417 90 + . . scaffold1180 GLEAN mRNA 13672 45655 0.485788 + . ID=CGI_10005979; scaffold37006 WUBlastX LTR_DIRS 26561 26830 100 - . . scaffold37006 GLEAN mRNA 18201 34112 0.554997 + . ID=CGI_10002223; scaffold425 WUBlastX DNA_IS4EU 127587 128141 199 - . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold1352 WUBlastX LINE_RTE-X 402393 402536 41 + . . scaffold1352 GLEAN mRNA 400458 408667 0.333165 + . ID=CGI_10018425; scaffold603 WUBlastX LINE_L1 19277 19675 35 - . . scaffold603 GLEAN mRNA 13948 26603 0.533291 - . ID=CGI_10009894; scaffold247 WUBlastX LTR_DIRS 326796 327707 267 + . . scaffold247 GLEAN mRNA 324544 333278 0.675637 - . ID=CGI_10018594; scaffold998 WUBlastX LINE_L1-Tx1 125880 126593 71 + . . scaffold998 GLEAN mRNA 116508 131912 0.996071 - . ID=CGI_10006465; scaffold998 WUBlastX LINE_L1-Tx1 126571 127287 140 + . . scaffold998 GLEAN mRNA 116508 131912 0.996071 - . ID=CGI_10006465; scaffold1334 WUBlastX LINE_Penelope 9121 9687 58 + . . scaffold1334 GLEAN mRNA 1383 27081 0.666269 - . ID=CGI_10003403; scaffold43064 WUBlastX LINE_RTE-X 21277 21408 55 - . . scaffold43064 GLEAN mRNA 2241 22972 0.292417 + . ID=CGI_10008625; scaffold602 WUBlastX DNA_Harbinger 616312 616449 51 - . . scaffold602 GLEAN mRNA 616228 617272 1 - . ID=CGI_10023197; scaffold602 WUBlastX DNA_Harbinger 616537 616797 200 - . . scaffold602 GLEAN mRNA 616228 617272 1 - . ID=CGI_10023197; scaffold602 WUBlastX DNA_Harbinger 616958 617272 162 - . . scaffold602 GLEAN mRNA 616228 617272 1 - . ID=CGI_10023197; scaffold43452 WUBlastX DNA_hAT 147634 148887 346 + . . scaffold43452 GLEAN mRNA 147634 149397 0.499173 + . ID=CGI_10010482; scaffold42 WUBlastX LINE_CR1-L2 206555 206830 107 + . . scaffold42 GLEAN mRNA 204584 223955 0.545569 + . ID=CGI_10018912; scaffold1578 WUBlastX LTR_Pao 66502 66636 56 + . . scaffold1578 GLEAN mRNA 44226 72498 0.998909 - . ID=CGI_10008160; scaffold363 WUBlastX DNA_Academ 426498 426851 363 + . . scaffold363 GLEAN mRNA 426498 426851 0.999949 + . ID=CGI_10019306; scaffold1277 WUBlastX LTR_Gypsy 191892 192899 366 - . . scaffold1277 GLEAN mRNA 180148 200196 1 + . ID=CGI_10008024; scaffold896 WUBlastX LINE_R2-Hero 115155 115667 200 + . . scaffold896 GLEAN mRNA 79994 116374 0.57033 - . ID=CGI_10022832; scaffold896 WUBlastX LINE_R2-Hero 115673 115981 192 + . . scaffold896 GLEAN mRNA 79994 116374 0.57033 - . ID=CGI_10022832; scaffold896 WUBlastX LINE_R2-Hero 115983 116141 48 + . . scaffold896 GLEAN mRNA 79994 116374 0.57033 - . ID=CGI_10022832; scaffold90 WUBlastX DNA_Maverick 136159 136779 112 + . . scaffold90 GLEAN mRNA 135730 142790 0.547035 + . ID=CGI_10015161; scaffold90 WUBlastX DNA_Maverick 137077 137178 30 + . . scaffold90 GLEAN mRNA 135730 142790 0.547035 + . ID=CGI_10015161; scaffold90 WUBlastX DNA_Maverick 137178 137648 136 + . . scaffold90 GLEAN mRNA 135730 142790 0.547035 + . ID=CGI_10015161; scaffold90 WUBlastX DNA_Maverick 137721 137876 117 + . . scaffold90 GLEAN mRNA 135730 142790 0.547035 + . ID=CGI_10015161; scaffold43702 WUBlastX LINE_RTE-X 215374 217032 242 + . . scaffold43702 GLEAN mRNA 215243 218046 1 - . ID=CGI_10011915; scaffold789 WUBlastX DNA_hAT 70758 70889 27 + . . scaffold789 GLEAN mRNA 70758 72925 0.499999 + . ID=CGI_10017180; scaffold789 WUBlastX DNA_hAT 71273 72898 404 + . . scaffold789 GLEAN mRNA 70758 72925 0.499999 + . ID=CGI_10017180; scaffold1340 WUBlastX DNA_hAT 4669 6294 404 - . . scaffold1340 GLEAN mRNA 4642 6809 1 - . ID=CGI_10001405; scaffold1340 WUBlastX DNA_hAT 6678 6809 27 - . . scaffold1340 GLEAN mRNA 4642 6809 1 - . ID=CGI_10001405; scaffold707 WUBlastX DNA_Harbinger 47451 47711 102 - . . scaffold707 GLEAN mRNA 28186 50322 0.998251 + . ID=CGI_10007721; scaffold707 WUBlastX DNA_Harbinger 48493 48606 110 - . . scaffold707 GLEAN mRNA 28186 50322 0.998251 + . ID=CGI_10007721; scaffold707 WUBlastX DNA_Harbinger 49261 49629 157 - . . scaffold707 GLEAN mRNA 28186 50322 0.998251 + . ID=CGI_10007721; scaffold579 WUBlastX LINE_RTE-BovB 268182 268334 131 + . . scaffold579 GLEAN mRNA 263302 283849 0.988891 + . ID=CGI_10011268; scaffold41816 WUBlastX LINE_RTE-X 86960 87229 25 - . . scaffold41816 GLEAN mRNA 84334 89370 0.999542 + . ID=CGI_10005649; scaffold986 WUBlastX DNA_Harbinger 137234 137431 61 - . . scaffold986 GLEAN mRNA 135296 141072 0.877811 + . ID=CGI_10009960; scaffold986 WUBlastX DNA_Harbinger 137571 137768 117 - . . scaffold986 GLEAN mRNA 135296 141072 0.877811 + . ID=CGI_10009960; scaffold986 WUBlastX DNA_Harbinger 137855 137941 53 - . . scaffold986 GLEAN mRNA 135296 141072 0.877811 + . ID=CGI_10009960; scaffold986 WUBlastX DNA_Harbinger 138128 138250 82 - . . scaffold986 GLEAN mRNA 135296 141072 0.877811 + . ID=CGI_10009960; scaffold142 WUBlastX DNA_MuDR 980422 982260 439 + . . scaffold142 GLEAN mRNA 963818 985587 0.999623 - . ID=CGI_10026782; scaffold88 WUBlastX DNA_TcMar-Tc1 18330 19220 388 - . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold42364 WUBlastX LINE_CR1-L2 76004 76306 85 - . . scaffold42364 GLEAN mRNA 72172 88504 0.999923 + . ID=CGI_10006723; scaffold815 WUBlastX LINE_RTE-X 11395 11589 66 + . . scaffold815 GLEAN mRNA 3623 27508 0.999835 - . ID=CGI_10001932; scaffold1017 WUBlastX LINE_L1-Tx1 3128 4381 357 + . . scaffold1017 GLEAN mRNA 2075 8937 1 - . ID=CGI_10024977; scaffold29598 WUBlastX LINE_RTE-X 3215 3796 412 - . . scaffold29598 GLEAN mRNA 1487 5790 0.999943 - . ID=CGI_10000548; scaffold1272 WUBlastX LTR_Ngaro 167145 168152 468 - . . scaffold1272 GLEAN mRNA 155957 203314 0.324986 - . ID=CGI_10008310; scaffold541 WUBlastX LINE_RTE-X 469014 471281 384 + . . scaffold541 GLEAN mRNA 466590 480582 0.782383 + . ID=CGI_10022394; scaffold36906 WUBlastX LTR_DIRS 17139 17219 33 - . . scaffold36906 GLEAN mRNA 239 18767 0.841273 + . ID=CGI_10002185; scaffold1097 WUBlastX LINE_RTE-BovB 683183 683386 82 - . . scaffold1097 GLEAN mRNA 671182 687187 0.811238 + . ID=CGI_10024541; scaffold99 WUBlastX LINE_CR1-L2 31585 32076 129 - . . scaffold99 GLEAN mRNA 22545 38354 0.404855 + . ID=CGI_10021189; scaffold99 WUBlastX LINE_CR1-L2 32382 33008 233 - . . scaffold99 GLEAN mRNA 22545 38354 0.404855 + . ID=CGI_10021189; scaffold1507 WUBlastX LTR_Ngaro 13515 13787 189 + . . scaffold1507 GLEAN mRNA 8112 20039 0.965106 - . ID=CGI_10001768; scaffold1507 WUBlastX LTR_Ngaro 13898 14131 144 + . . scaffold1507 GLEAN mRNA 8112 20039 0.965106 - . ID=CGI_10001768; scaffold1507 WUBlastX LTR_Ngaro 14107 14325 99 + . . scaffold1507 GLEAN mRNA 8112 20039 0.965106 - . ID=CGI_10001768; scaffold1714 WUBlastX DNA_IS4EU 216276 217025 457 - . . scaffold1714 GLEAN mRNA 216267 217025 1 - . ID=CGI_10013674; scaffold77 WUBlastX LINE_RTE-BovB 949391 949882 213 + . . scaffold77 GLEAN mRNA 945677 960566 0.933688 - . ID=CGI_10028012; scaffold1210 WUBlastX LINE_RTE-X 219866 220099 48 - . . scaffold1210 GLEAN mRNA 219854 220240 0.999999 - . ID=CGI_10014605; scaffold1036 WUBlastX LINE_RTE-X 167250 168185 562 + . . scaffold1036 GLEAN mRNA 165168 179169 0.593142 - . ID=CGI_10019951; scaffold514 WUBlastX LTR_DIRS 89716 90645 558 + . . scaffold514 GLEAN mRNA 67103 122805 0.383041 - . ID=CGI_10018346; scaffold1329 WUBlastX DNA_hAT-Ac 92576 93394 423 - . . scaffold1329 GLEAN mRNA 77218 94406 0.816606 - . ID=CGI_10015782; scaffold1174 WUBlastX LINE_L1 169577 170143 307 + . . scaffold1174 GLEAN mRNA 165948 193006 0.453368 - . ID=CGI_10026029; scaffold1188 WUBlastX LTR_Ngaro 288924 290150 531 + . . scaffold1188 GLEAN mRNA 281129 295835 0.924496 + . ID=CGI_10025467; scaffold203 WUBlastX DNA_Crypton 108682 109695 609 - . . scaffold203 GLEAN mRNA 85709 116665 0.258685 + . ID=CGI_10021064; scaffold43036 WUBlastX DNA_hAT-Blackja 150595 150807 106 + . . scaffold43036 GLEAN mRNA 148188 171820 0.999804 + . ID=CGI_10008498; scaffold43036 WUBlastX DNA_hAT-Blackja 150806 151774 322 + . . scaffold43036 GLEAN mRNA 148188 171820 0.999804 + . ID=CGI_10008498; scaffold1722 WUBlastX LINE_RTE-X 310245 311006 142 - . . scaffold1722 GLEAN mRNA 308195 316246 0.999949 - . ID=CGI_10014888; scaffold43782 WUBlastX LINE_RTE-X 112198 112746 193 - . . scaffold43782 GLEAN mRNA 102494 129639 0.999947 + . ID=CGI_10012366; scaffold721 WUBlastX LINE_L2 84424 84570 80 + . . scaffold721 GLEAN mRNA 68079 89248 0.992034 + . ID=CGI_10021995; scaffold853 WUBlastX LTR_Gypsy 453388 453822 194 - . . scaffold853 GLEAN mRNA 448693 455013 0.999949 - . ID=CGI_10017517; scaffold43280 WUBlastX LTR_Gypsy 168118 168300 31 + . . scaffold43280 GLEAN mRNA 132335 177835 0.651964 - . ID=CGI_10009657; scaffold6 WUBlastX DNA_Sola 613670 613783 32 - . . scaffold6 GLEAN mRNA 613145 618796 0.999953 - . ID=CGI_10022330; scaffold6 WUBlastX DNA_Sola 613747 615075 614 - . . scaffold6 GLEAN mRNA 613145 618796 0.999953 - . ID=CGI_10022330; scaffold1708 WUBlastX LINE_L2 6895 6993 47 - . . scaffold1708 GLEAN mRNA 6391 9576 0.777526 + . ID=CGI_10005574; scaffold22 WUBlastX LINE_L2 1083911 1084951 565 + . . scaffold22 GLEAN mRNA 1079633 1088835 0.644932 - . ID=CGI_10028896; scaffold43782 WUBlastX LINE_RTE-X 112327 112743 203 - . . scaffold43782 GLEAN mRNA 102494 129639 0.999947 + . ID=CGI_10012366; scaffold1708 WUBlastX LINE_L2 8613 8837 70 - . . scaffold1708 GLEAN mRNA 6391 9576 0.777526 + . ID=CGI_10005574; scaffold94 WUBlastX LTR_Gypsy 64578 65351 57 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold595 WUBlastX LTR_Ngaro 91762 92733 432 - . . scaffold595 GLEAN mRNA 66058 94029 0.989948 - . ID=CGI_10005863; scaffold44008 WUBlastX DNA_Harbinger 37042 37440 307 - . . scaffold44008 GLEAN mRNA 36940 62806 0.508026 - . ID=CGI_10015282; scaffold44008 WUBlastX DNA_Harbinger 37443 38204 528 - . . scaffold44008 GLEAN mRNA 36940 62806 0.508026 - . ID=CGI_10015282; scaffold36450 WUBlastX RC_Helitron 5703 6929 278 + . . scaffold36450 GLEAN mRNA 3992 12302 0.990019 + . ID=CGI_10001979; scaffold1235 WUBlastX LINE_L2 160641 160721 24 - . . scaffold1235 GLEAN mRNA 159432 170109 0.960098 - . ID=CGI_10011836; scaffold38364 WUBlastX LTR_Gypsy 13500 14330 42 + . . scaffold38364 GLEAN mRNA 13434 14450 0.986568 + . ID=CGI_10002730; scaffold831 WUBlastX LTR_Ngaro 22267 22560 45 + . . scaffold831 GLEAN mRNA 21855 31981 1 + . ID=CGI_10010286; scaffold885 WUBlastX LTR_Ngaro 980868 981035 78 - . . scaffold885 GLEAN mRNA 956449 984182 0.969214 + . ID=CGI_10025232; scaffold128 WUBlastX DNA_Crypton 97373 97579 79 - . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; scaffold392 WUBlastX LTR_Gypsy 37918 38169 65 - . . scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; scaffold1213 WUBlastX DNA_hAT-Tip100 359264 359563 81 + . . scaffold1213 GLEAN mRNA 350181 406483 0.805895 + . ID=CGI_10027449; scaffold1891 WUBlastX DNA_Harbinger 151086 151211 29 - . . scaffold1891 GLEAN mRNA 133537 158573 0.499706 - . ID=CGI_10008737; scaffold1035 WUBlastX DNA_Kolobok 161709 161819 66 - . . scaffold1035 GLEAN mRNA 157961 163458 0.999666 + . ID=CGI_10009365; scaffold267 WUBlastX DNA_Kolobok 492434 492604 75 + . . scaffold267 GLEAN mRNA 492434 492911 1 + . ID=CGI_10018313; scaffold257 WUBlastX DNA_TcMar-Marin 1600286 1600366 64 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold1682 WUBlastX DNA_TcMar-Marin 448578 448763 32 + . . scaffold1682 GLEAN mRNA 447464 452325 1 - . ID=CGI_10016060; scaffold43624 WUBlastX DNA_P 106913 107155 71 + . . scaffold43624 GLEAN mRNA 106501 110062 0.981478 + . ID=CGI_10011506; scaffold508 WUBlastX DNA_MuDR 151509 151895 42 - . . scaffold508 GLEAN mRNA 143632 151958 0.536138 - . ID=CGI_10011200; scaffold508 WUBlastX DNA_MuDR 167392 167778 42 - . . scaffold508 GLEAN mRNA 167248 167811 0.936033 - . ID=CGI_10011201; scaffold42124 WUBlastX DNA_MuDR 42702 42965 48 - . . scaffold42124 GLEAN mRNA 33717 47543 0.69411 + . ID=CGI_10006230; scaffold1179 WUBlastX LINE_L1 940877 941167 33 + . . scaffold1179 GLEAN mRNA 936280 947260 0.224969 + . ID=CGI_10027393; scaffold802 WUBlastX LINE_L1 402823 403269 30 + . . scaffold802 GLEAN mRNA 402697 404202 0.586574 + . ID=CGI_10015735; scaffold43008 WUBlastX LINE_L1 2603 2764 42 + . . scaffold43008 GLEAN mRNA 2147 17942 0.982229 + . ID=CGI_10008457; scaffold737 WUBlastX LINE_L1 294767 295024 35 - . . scaffold737 GLEAN mRNA 290958 298439 0.807998 - . ID=CGI_10014317; scaffold1021 WUBlastX LINE_L1-Tx1 261352 261573 93 + . . scaffold1021 GLEAN mRNA 253592 262840 0.558214 - . ID=CGI_10022488; scaffold42408 WUBlastX LINE_L1 112982 113233 71 + . . scaffold42408 GLEAN mRNA 111494 115012 0.832978 - . ID=CGI_10006751; scaffold1276 WUBlastX LINE_RTE-BovB 28988 29221 78 + . . scaffold1276 GLEAN mRNA 7140 43389 0.398616 - . ID=CGI_10003438; scaffold37532 WUBlastX LTR_Gypsy 31671 32123 77 - . . scaffold37532 GLEAN mRNA 24867 43092 0.82218 + . ID=CGI_10002401; scaffold1704 WUBlastX DNA_PiggyBac 19022 19255 38 - . . scaffold1704 GLEAN mRNA 18953 19327 0.999984 - . ID=CGI_10010160; scaffold1704 WUBlastX DNA_PiggyBac 19022 19255 38 - . . scaffold1704 GLEAN mRNA 12405 27811 0.998148 + . ID=CGI_10010159; scaffold967 WUBlastX LINE_RTE-X 331838 332017 75 + . . scaffold967 GLEAN mRNA 330769 334091 1 + . ID=CGI_10015463; scaffold76 WUBlastX LINE_RTE-X 227718 227993 40 + . . scaffold76 GLEAN mRNA 221391 229684 0.999675 - . ID=CGI_10009406; scaffold43072 WUBlastX LINE_RTE-X 112632 112985 22 - . . scaffold43072 GLEAN mRNA 112346 129150 0.396359 - . ID=CGI_10008700; scaffold1179 WUBlastX LINE_RTE-X 480682 480813 24 + . . scaffold1179 GLEAN mRNA 480376 480813 0.593391 - . ID=CGI_10027372; scaffold1525 WUBlastX LTR_Ngaro 354803 355078 47 + . . scaffold1525 GLEAN mRNA 345189 363927 0.815102 - . ID=CGI_10013870; scaffold1679 WUBlastX LTR_Gypsy 32086 32553 43 - . . scaffold1679 GLEAN mRNA 27427 41298 0.999999 - . ID=CGI_10002338; scaffold962 WUBlastX LTR_Gypsy 17446 17592 75 + . . scaffold962 GLEAN mRNA 17446 17832 0.999586 + . ID=CGI_10027631; scaffold204 WUBlastX LINE_CR1-L2 399883 400065 73 + . . scaffold204 GLEAN mRNA 394042 414406 0.339936 + . ID=CGI_10026106; scaffold506 WUBlastX LINE_CR1-L2 265617 265859 36 - . . scaffold506 GLEAN mRNA 249863 266288 0.986132 + . ID=CGI_10019263; scaffold1583 WUBlastX LTR_Gypsy 822207 822614 38 - . . scaffold1583 GLEAN mRNA 822207 822614 0.999365 - . ID=CGI_10025843; scaffold1583 WUBlastX LTR_Gypsy 822649 822686 38 - . . scaffold1583 GLEAN mRNA 822649 823883 0.593542 - . ID=CGI_10025844; scaffold32470 WUBlastX LTR_Gypsy 1269 1460 108 - . . scaffold32470 GLEAN mRNA 176 4292 1 + . ID=CGI_10000898; scaffold479 WUBlastX LTR_Ngaro 237067 237094 54 - . . scaffold479 GLEAN mRNA 237067 237345 0.618241 - . ID=CGI_10015696; scaffold1777 WUBlastX LTR_Ngaro 8712 8855 26 + . . scaffold1777 GLEAN mRNA 5363 10416 0.999547 + . ID=CGI_10003152; scaffold99 WUBlastX LINE_R1 31558 31722 27 - . . scaffold99 GLEAN mRNA 22545 38354 0.404855 + . ID=CGI_10021189; scaffold404 WUBlastX LTR_DIRS 318644 318871 61 + . . scaffold404 GLEAN mRNA 311425 335048 0.297334 - . ID=CGI_10013607; scaffold198 WUBlastX LTR_Gypsy 548534 549313 43 + . . scaffold198 GLEAN mRNA 532542 554203 0.338011 + . ID=CGI_10027815; scaffold1024 WUBlastX LINE_L1 1142064 1142189 21 + . . scaffold1024 GLEAN mRNA 1112754 1144737 0.704183 + . ID=CGI_10028569; scaffold1769 WUBlastX LTR_Gypsy 102392 102652 37 + . . scaffold1769 GLEAN mRNA 102392 103552 0.503348 + . ID=CGI_10009238; scaffold1188 WUBlastX LTR_Ngaro 288104 288358 75 + . . scaffold1188 GLEAN mRNA 281129 295835 0.924496 + . ID=CGI_10025467; scaffold35014 WUBlastX DNA_PiggyBac 14617 14799 77 + . . scaffold35014 GLEAN mRNA 9316 21495 0.996281 + . ID=CGI_10001389; scaffold1788 WUBlastX DNA_Maverick 53229 53552 60 - . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold43064 WUBlastX LINE_RTE-BovB 21274 21432 42 - . . scaffold43064 GLEAN mRNA 2241 22972 0.292417 + . ID=CGI_10008625; scaffold873 WUBlastX LINE_Proto2 370257 370381 77 - . . scaffold873 GLEAN mRNA 370257 378125 0.461608 + . ID=CGI_10014438; scaffold433 WUBlastX LTR_Gypsy 1202667 1202765 32 - . . scaffold433 GLEAN mRNA 1202502 1202765 0.999995 - . ID=CGI_10027118; scaffold950 WUBlastX DNA_TcMar-Pogo 107705 108073 81 - . . scaffold950 GLEAN mRNA 86388 112962 1 - . ID=CGI_10022920; scaffold786 WUBlastX LINE_L1-Tx1 346474 346827 28 + . . scaffold786 GLEAN mRNA 340138 347810 1 + . ID=CGI_10013708; scaffold867 WUBlastX LINE_L1-Tx1 256313 256399 30 + . . scaffold867 GLEAN mRNA 253182 264678 0.938203 - . ID=CGI_10026215; scaffold1189 WUBlastX LINE_CR1-L2 847758 848105 64 - . . scaffold1189 GLEAN mRNA 845721 854724 0.805708 + . ID=CGI_10023837; scaffold1189 WUBlastX LINE_CR1-L2 848087 848128 42 - . . scaffold1189 GLEAN mRNA 845721 854724 0.805708 + . ID=CGI_10023837; scaffold599 WUBlastX LTR_Pao 30411 30674 30 + . . scaffold599 GLEAN mRNA 29083 62122 0.696781 + . ID=CGI_10021706; scaffold12 WUBlastX DNA_hAT-hATw 3634 4122 43 - . . scaffold12 GLEAN mRNA 533 12832 0.970295 + . ID=CGI_10018011; scaffold625 WUBlastX LINE_L1 669258 669542 82 - . . scaffold625 GLEAN mRNA 660953 675922 0.820405 - . ID=CGI_10023430; scaffold1821 WUBlastX LINE_L1 171478 171843 44 + . . scaffold1821 GLEAN mRNA 167929 177659 0.681651 - . ID=CGI_10011291; scaffold853 WUBlastX DNA_Kolobok-Hyd 206913 207302 29 + . . scaffold853 GLEAN mRNA 204099 212863 1 - . ID=CGI_10017494; scaffold853 WUBlastX DNA_Kolobok-Hyd 206913 207302 29 + . . scaffold853 GLEAN mRNA 206619 210945 0.253956 + . ID=CGI_10017495; scaffold3 WUBlastX DNA_Kolobok-Hyd 290385 290438 25 - . . scaffold3 GLEAN mRNA 287358 293038 0.456262 - . ID=CGI_10027289; scaffold1719 WUBlastX LINE_RTE-X 316620 316925 57 - . . scaffold1719 GLEAN mRNA 297152 319693 0.889105 - . ID=CGI_10014286; scaffold343 WUBlastX DNA_Maverick 643952 643960 79 - . . scaffold343 GLEAN mRNA 643952 644134 0.514976 + . ID=CGI_10021772; scaffold343 WUBlastX DNA_Maverick 643828 643960 79 - . . scaffold343 GLEAN mRNA 643828 662585 1 - . ID=CGI_10021771; scaffold1860 WUBlastX LINE_RTE-X 334219 334761 32 - . . scaffold1860 GLEAN mRNA 329243 343922 0.916009 + . ID=CGI_10013950; scaffold984 WUBlastX LINE_L1-Tx1 3347 3826 63 + . . scaffold984 GLEAN mRNA 2190 6762 0.999998 + . ID=CGI_10000576; scaffold193 WUBlastX LINE_L1-Tx1 228032 228142 38 + . . scaffold193 GLEAN mRNA 225142 231463 0.959713 + . ID=CGI_10015231; scaffold802 WUBlastX LINE_L1-Tx1 141020 141229 37 + . . scaffold802 GLEAN mRNA 137512 196873 0.499283 - . ID=CGI_10015727; scaffold117 WUBlastX LINE_L2 53394 53564 21 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; C31510 WUBlastX DNA_Harbinger 6532 6846 60 + . . C31510 GLEAN mRNA 6475 7785 0.999797 + . ID=CGI_10000758; scaffold1678 WUBlastX DNA_IS4EU 173544 173753 62 + . . scaffold1678 GLEAN mRNA 153695 176010 0.290685 - . ID=CGI_10010386; scaffold1772 WUBlastX DNA_IS4EU 16450 17163 81 - . . scaffold1772 GLEAN mRNA 15531 17685 0.648545 - . ID=CGI_10014804; scaffold41164 WUBlastX LINE_RTE-X 86818 87090 76 + . . scaffold41164 GLEAN mRNA 83753 104051 0.95986 - . ID=CGI_10004764; scaffold733 WUBlastX DNA_Maverick 49045 49158 60 - . . scaffold733 GLEAN mRNA 37672 49158 0.939016 - . ID=CGI_10025863; scaffold1253 WUBlastX LINE_RTE-BovB 109340 109591 47 + . . scaffold1253 GLEAN mRNA 102918 110431 0.634382 - . ID=CGI_10004823; scaffold443 WUBlastX DNA_Crypton 599684 600181 24 + . . scaffold443 GLEAN mRNA 597664 607572 1 - . ID=CGI_10022780; scaffold1448 WUBlastX LTR_Ngaro 31489 31614 60 - . . scaffold1448 GLEAN mRNA 28289 31614 0.624176 - . ID=CGI_10011853; scaffold499 WUBlastX LTR_Gypsy 251392 252036 80 + . . scaffold499 GLEAN mRNA 249813 257188 0.581333 - . ID=CGI_10015767; scaffold1219 WUBlastX LTR_Gypsy 618177 618968 66 - . . scaffold1219 GLEAN mRNA 568258 618995 0.744896 - . ID=CGI_10024286; scaffold37844 WUBlastX LINE_Penelope 5656 5937 38 - . . scaffold37844 GLEAN mRNA 2684 16247 0.999999 - . ID=CGI_10002508; scaffold1376 WUBlastX LINE_R2 45442 45498 24 - . . scaffold1376 GLEAN mRNA 39109 52499 0.502849 - . ID=CGI_10002795; scaffold42 WUBlastX LINE_RTE-X 205807 206178 51 - . . scaffold42 GLEAN mRNA 204584 223955 0.545569 + . ID=CGI_10018912; scaffold70 WUBlastX LINE_RTE-X 517610 517780 83 - . . scaffold70 GLEAN mRNA 505766 521255 0.349382 + . ID=CGI_10024775; scaffold70 WUBlastX LINE_RTE-X 517610 517780 83 - . . scaffold70 GLEAN mRNA 501356 529120 0.998611 - . ID=CGI_10024774; scaffold102 WUBlastX DNA_TcMar-Tc2 258065 258676 77 - . . scaffold102 GLEAN mRNA 251987 267295 0.910885 - . ID=CGI_10028430; scaffold22 WUBlastX LTR_Pao 1074443 1074496 25 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold1849 WUBlastX LINE_CR1-L2 349432 349596 70 - . . scaffold1849 GLEAN mRNA 345198 370191 0.662499 + . ID=CGI_10015920; scaffold1138 WUBlastX LINE_CR1 185523 185804 109 + . . scaffold1138 GLEAN mRNA 183755 192154 0.999676 - . ID=CGI_10015373; scaffold42584 WUBlastX LINE_CR1-L2 100746 100991 24 + . . scaffold42584 GLEAN mRNA 87388 105090 0.998677 + . ID=CGI_10007309; scaffold451 WUBlastX LTR_Gypsy-Cigr 63215 63703 68 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold1066 WUBlastX LTR_Ngaro 179720 179902 42 - . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold1036 WUBlastX DNA_IS4EU 68299 68433 45 + . . scaffold1036 GLEAN mRNA 62334 73775 0.755696 - . ID=CGI_10019943; scaffold42030 WUBlastX LINE_CR1 78914 79243 80 + . . scaffold42030 GLEAN mRNA 73599 103190 0.98897 + . ID=CGI_10006046; scaffold401 WUBlastX DNA_TcMar-Tc1 9882 10649 83 + . . scaffold401 GLEAN mRNA 8376 27637 0.998672 + . ID=CGI_10006983; scaffold271 WUBlastX LINE_L1-Tx1 470542 470874 43 - . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold487 WUBlastX DNA_Kolobok 441998 442141 95 + . . scaffold487 GLEAN mRNA 439996 447135 0.39713 - . ID=CGI_10017054; scaffold37740 WUBlastX DNA_MuDR 9773 9880 89 - . . scaffold37740 GLEAN mRNA 280 12182 0.630216 - . ID=CGI_10002468; scaffold1698 WUBlastX LINE_Penelope 558800 559120 82 - . . scaffold1698 GLEAN mRNA 555176 595908 0.182915 - . ID=CGI_10019393; scaffold274 WUBlastX LINE_Penelope 34097 34417 89 - . . scaffold274 GLEAN mRNA 31807 34983 0.990803 + . ID=CGI_10017008; scaffold42022 WUBlastX LINE_L2 34090 34206 22 + . . scaffold42022 GLEAN mRNA 12310 51169 0.982585 - . ID=CGI_10006049; scaffold1673 WUBlastX LINE_L1 99037 99915 64 + . . scaffold1673 GLEAN mRNA 58935 108305 0.828275 + . ID=CGI_10013571; scaffold1863 WUBlastX LINE_RTE-X 308872 309369 40 + . . scaffold1863 GLEAN mRNA 292710 321956 0.398552 - . ID=CGI_10016693; scaffold31538 WUBlastX DNA_Maverick 5215 5592 105 - . . scaffold31538 GLEAN mRNA 4012 9466 0.997845 - . ID=CGI_10000765; scaffold288 WUBlastX LINE_RTE-BovB 208911 209609 71 - . . scaffold288 GLEAN mRNA 165543 215886 0.392804 - . ID=CGI_10020660; C31366 WUBlastX LINE_L1-Tx1 5311 5805 46 + . . C31366 GLEAN mRNA 393 6299 0.999547 - . ID=CGI_10000739; scaffold1132 WUBlastX DNA_TcMar-Tc1 210455 210826 92 + . . scaffold1132 GLEAN mRNA 207782 231438 0.973884 - . ID=CGI_10023314; scaffold226 WUBlastX LTR_Ngaro 467463 467582 41 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold734 WUBlastX LINE_L2 20076 20975 28 - . . scaffold734 GLEAN mRNA 15567 24465 0.477862 - . ID=CGI_10003361; scaffold621 WUBlastX LTR_DIRS 360334 360450 41 - . . scaffold621 GLEAN mRNA 360060 382748 0.996965 - . ID=CGI_10017688; scaffold1740 WUBlastX LTR_Gypsy 51695 52180 123 + . . scaffold1740 GLEAN mRNA 47863 57861 0.885028 - . ID=CGI_10011443; scaffold1884 WUBlastX LTR_Gypsy 18057 18293 29 - . . scaffold1884 GLEAN mRNA 17991 22167 1 - . ID=CGI_10012006; scaffold1301 WUBlastX DNA_MuDR 795999 796262 118 - . . scaffold1301 GLEAN mRNA 795655 798380 0.702584 - . ID=CGI_10027744; scaffold1301 WUBlastX DNA_MuDR 795999 796262 118 - . . scaffold1301 GLEAN mRNA 781075 819646 0.518044 + . ID=CGI_10027743; scaffold313 WUBlastX LINE_RTE-X 1190183 1190257 49 - . . scaffold313 GLEAN mRNA 1180096 1191800 0.492755 + . ID=CGI_10026643; scaffold315 WUBlastX LINE_RTE-X 318868 318981 42 + . . scaffold315 GLEAN mRNA 296779 330061 0.935948 + . ID=CGI_10020417; scaffold315 WUBlastX LINE_RTE-X 319046 319144 26 + . . scaffold315 GLEAN mRNA 296779 330061 0.935948 + . ID=CGI_10020417; scaffold569 WUBlastX LINE_L1-Tx1 163457 163630 87 - . . scaffold569 GLEAN mRNA 133999 168874 0.674144 + . ID=CGI_10009498; scaffold1733 WUBlastX LINE_CR1-L2 164854 165315 91 + . . scaffold1733 GLEAN mRNA 156260 181153 0.701996 + . ID=CGI_10009488; scaffold719 WUBlastX LTR_Pao 352263 352724 128 + . . scaffold719 GLEAN mRNA 352016 396683 0.96406 + . ID=CGI_10016008; scaffold86 WUBlastX LTR_Gypsy-Cigr 1277510 1277977 149 - . . scaffold86 GLEAN mRNA 1231261 1279248 0.605603 + . ID=CGI_10028197; scaffold37010 WUBlastX LTR_DIRS 30964 31089 49 - . . scaffold37010 GLEAN mRNA 9826 38663 0.529667 + . ID=CGI_10002196; scaffold43182 WUBlastX LTR_Gypsy 166335 166466 52 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold386 WUBlastX DNA_IS4EU 211526 211885 90 + . . scaffold386 GLEAN mRNA 207482 239068 0.43817 - . ID=CGI_10012689; scaffold317 WUBlastX DNA_Harbinger 111630 111686 25 + . . scaffold317 GLEAN mRNA 109364 113529 0.986804 - . ID=CGI_10019343; scaffold317 WUBlastX DNA_Harbinger 111682 111912 110 + . . scaffold317 GLEAN mRNA 109364 113529 0.986804 - . ID=CGI_10019343; scaffold1321 WUBlastX LTR_Gypsy 160975 161472 161 - . . scaffold1321 GLEAN mRNA 144678 167818 0.544485 + . ID=CGI_10010664; scaffold632 WUBlastX LINE_L1 483360 483686 82 + . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold461 WUBlastX LINE_L2 293771 293842 20 - . . scaffold461 GLEAN mRNA 287176 297048 0.67711 - . ID=CGI_10020108; scaffold43696 WUBlastX LTR_Gypsy 3099 3911 134 + . . scaffold43696 GLEAN mRNA 2631 16978 0.0834374 + . ID=CGI_10011797; scaffold38066 WUBlastX LINE_L1-Tx1 26079 26480 127 - . . scaffold38066 GLEAN mRNA 23087 36782 1 + . ID=CGI_10002612; scaffold42 WUBlastX LTR_Ngaro 80747 81298 130 - . . scaffold42 GLEAN mRNA 77522 83143 0.592597 - . ID=CGI_10018905; scaffold1024 WUBlastX DNA_PiggyBac 1074859 1075104 82 - . . scaffold1024 GLEAN mRNA 1070619 1077233 0.9551 - . ID=CGI_10028563; scaffold1480 WUBlastX LINE_R2 137673 138953 108 - . . scaffold1480 GLEAN mRNA 131830 138953 0.535981 - . ID=CGI_10008637; scaffold678 WUBlastX LINE_L2 647572 647910 168 + . . scaffold678 GLEAN mRNA 636648 664664 0.986036 - . ID=CGI_10026369; scaffold39470 WUBlastX LINE_L2 44078 44596 49 + . . scaffold39470 GLEAN mRNA 37603 51823 0.681651 + . ID=CGI_10003380; scaffold54 WUBlastX LTR_Gypsy 83356 83460 89 + . . scaffold54 GLEAN mRNA 79485 84388 0.939929 + . ID=CGI_10023654; scaffold633 WUBlastX LINE_L2 56822 57517 117 + . . scaffold633 GLEAN mRNA 49171 62840 0.82948 + . ID=CGI_10004269; scaffold1286 WUBlastX LINE_CR1 114432 114557 95 - . . scaffold1286 GLEAN mRNA 98601 123345 0.396375 - . ID=CGI_10009514; scaffold12 WUBlastX LTR_Gypsy 344503 344856 58 + . . scaffold12 GLEAN mRNA 326477 354530 0.999321 + . ID=CGI_10018042; scaffold396 WUBlastX LTR_Ngaro 144704 145048 134 - . . scaffold396 GLEAN mRNA 135948 145670 0.499792 + . ID=CGI_10018099; scaffold38978 WUBlastX DNA_TcMar-Tc1 3096 3659 128 + . . scaffold38978 GLEAN mRNA 443 10686 0.499437 + . ID=CGI_10003126; scaffold34596 WUBlastX DNA_TcMar-Tc1 6852 7226 108 + . . scaffold34596 GLEAN mRNA 238 15197 0.650923 - . ID=CGI_10001323; scaffold1160 WUBlastX LINE_RTE-X 260129 260698 133 + . . scaffold1160 GLEAN mRNA 253181 264437 0.999999 - . ID=CGI_10015353; scaffold1314 WUBlastX DNA_Sola 25258 25608 48 + . . scaffold1314 GLEAN mRNA 24248 26243 0.657792 + . ID=CGI_10009303; scaffold1314 WUBlastX DNA_Sola 25747 25875 38 + . . scaffold1314 GLEAN mRNA 24248 26243 0.657792 + . ID=CGI_10009303; scaffold1024 WUBlastX DNA_TcMar-Tc1 222436 222534 46 - . . scaffold1024 GLEAN mRNA 191784 246938 0.99909 + . ID=CGI_10028528; scaffold595 WUBlastX LTR_Ngaro 91780 92553 509 - . . scaffold595 GLEAN mRNA 66058 94029 0.989948 - . ID=CGI_10005863; scaffold1373 WUBlastX LTR_Pao 20958 22133 1135 + . . scaffold1373 GLEAN mRNA 14147 30425 0.488375 - . ID=CGI_10007904; scaffold1373 WUBlastX LTR_Pao 20958 22133 1135 + . . scaffold1373 GLEAN mRNA 15305 23957 0.999368 + . ID=CGI_10007905; scaffold976 WUBlastX LINE_L2 372920 373162 20 + . . scaffold976 GLEAN mRNA 356629 381531 0.51151 + . ID=CGI_10014020; scaffold313 WUBlastX DNA_Crypton 758321 759307 88 + . . scaffold313 GLEAN mRNA 734660 773846 0.452737 + . ID=CGI_10026622; scaffold44098 WUBlastX LINE_L2 194269 195423 87 + . . scaffold44098 GLEAN mRNA 188555 213785 0.544557 + . ID=CGI_10017708; scaffold674 WUBlastX LTR_Ngaro 12166 12651 170 + . . scaffold674 GLEAN mRNA 11758 15607 0.993811 + . ID=CGI_10002488; scaffold492 WUBlastX LTR_Gypsy-Troyk 113626 113832 1085 - . . scaffold492 GLEAN mRNA 113593 113832 0.695642 - . ID=CGI_10024810; scaffold513 WUBlastX LTR_Pao 9180 9332 41 + . . scaffold513 GLEAN mRNA 2113 39536 0.917684 + . ID=CGI_10022134; scaffold1237 WUBlastX LTR_Gypsy 223708 224433 282 - . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold1237 WUBlastX LTR_Gypsy 224433 225776 430 - . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold1780 WUBlastX LINE_RTE-BovB 111588 112832 981 + . . scaffold1780 GLEAN mRNA 107008 115035 0.543 - . ID=CGI_10014549; scaffold36278 WUBlastX DNA_PiggyBac 26782 26844 41 - . . scaffold36278 GLEAN mRNA 22300 32002 0.651135 - . ID=CGI_10001848; scaffold458 WUBlastX LTR_Ngaro 171860 172369 155 + . . scaffold458 GLEAN mRNA 171659 179488 0.10231 + . ID=CGI_10013591; scaffold178 WUBlastX LINE_Penelope 104099 104686 69 - . . scaffold178 GLEAN mRNA 95706 112577 0.461285 - . ID=CGI_10004828; scaffold40928 WUBlastX DNA_Kolobok 67073 67312 133 - . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold40928 WUBlastX DNA_Kolobok 67787 68047 25 - . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold42348 WUBlastX LINE_RTE-X 101933 102739 84 - . . scaffold42348 GLEAN mRNA 96568 107151 0.643244 - . ID=CGI_10006683; scaffold42946 WUBlastX LINE_L1-Tx1 35659 35988 124 - . . scaffold42946 GLEAN mRNA 33025 55751 0.459933 + . ID=CGI_10008170; scaffold698 WUBlastX LTR_DIRS 82728 84389 1217 - . . scaffold698 GLEAN mRNA 81586 93981 0.592995 - . ID=CGI_10020727; scaffold191 WUBlastX LINE_L1-Tx1 559555 559911 52 + . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold1616 WUBlastX LINE_Penelope 59756 60031 23 - . . scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; scaffold1024 WUBlastX LTR_Ngaro 1701971 1702258 180 + . . scaffold1024 GLEAN mRNA 1693215 1725420 0.440752 - . ID=CGI_10028584; scaffold43 WUBlastX LINE_RTE-X 393741 394193 173 - . . scaffold43 GLEAN mRNA 380222 414471 0.256408 - . ID=CGI_10021355; scaffold210 WUBlastX LINE_RTE-X 141237 141650 72 + . . scaffold210 GLEAN mRNA 130765 152251 0.999676 - . ID=CGI_10015883; scaffold257 WUBlastX LTR_Gypsy 1095115 1097784 1400 - . . scaffold257 GLEAN mRNA 1093944 1099430 0.999918 - . ID=CGI_10027941; scaffold36410 WUBlastX DNA_Harbinger 6368 6724 147 + . . scaffold36410 GLEAN mRNA 4689 21980 0.354487 - . ID=CGI_10001887; scaffold43302 WUBlastX DNA_IS4EU 14349 14888 61 + . . scaffold43302 GLEAN mRNA 6372 24073 0.277786 - . ID=CGI_10009755; scaffold1347 WUBlastX DNA_IS4EU 24180 24299 42 + . . scaffold1347 GLEAN mRNA 21277 29429 0.935835 - . ID=CGI_10012972; scaffold1893 WUBlastX DNA_IS4EU 203398 203583 37 - . . scaffold1893 GLEAN mRNA 199713 203993 0.999824 + . ID=CGI_10008861; scaffold39642 WUBlastX DNA_Maverick 13247 13741 114 - . . scaffold39642 GLEAN mRNA 12930 17873 0.634289 + . ID=CGI_10003495; scaffold224 WUBlastX DNA_TcMar-Tc1 53274 53753 119 - . . scaffold224 GLEAN mRNA 41298 72438 0.99912 - . ID=CGI_10003616; scaffold226 WUBlastX LTR_Gypsy 920466 921299 192 + . . scaffold226 GLEAN mRNA 913200 931789 0.655497 - . ID=CGI_10025388; scaffold43686 WUBlastX LTR_Gypsy 187073 187330 117 - . . scaffold43686 GLEAN mRNA 172665 193661 0.978405 - . ID=CGI_10011758; scaffold597 WUBlastX LINE_CR1 37004 37168 31 - . . scaffold597 GLEAN mRNA 30096 40610 0.999676 + . ID=CGI_10004927; C36680 WUBlastX LINE_CR1 8898 9581 120 - . . C36680 GLEAN mRNA 2216 22548 0.727902 - . ID=CGI_10002070; scaffold591 WUBlastX LTR_Ngaro 602805 603299 144 - . . scaffold591 GLEAN mRNA 577441 607957 0.997895 + . ID=CGI_10027576; scaffold404 WUBlastX LINE_L1-Tx1 77820 78518 68 + . . scaffold404 GLEAN mRNA 74476 80325 0.99427 - . ID=CGI_10013603; scaffold632 WUBlastX LINE_L1-Tx1 483310 483345 22 + . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold162 WUBlastX LTR_Gypsy 271400 273580 1254 - . . scaffold162 GLEAN mRNA 254328 277132 0.643433 - . ID=CGI_10014094; scaffold1459 WUBlastX LTR_Gypsy 106127 109819 1149 + . . scaffold1459 GLEAN mRNA 92847 117435 0.999674 - . ID=CGI_10010107; scaffold169 WUBlastX LTR_Gypsy 629126 629560 146 + . . scaffold169 GLEAN mRNA 628224 637732 0.973288 - . ID=CGI_10022960; scaffold368 WUBlastX LTR_Gypsy 492032 492805 204 - . . scaffold368 GLEAN mRNA 456734 493375 0.348019 + . ID=CGI_10018714; scaffold689 WUBlastX LINE_RTE-BovB 166225 166281 24 + . . scaffold689 GLEAN mRNA 162763 181677 0.999 - . ID=CGI_10014826; scaffold557 WUBlastX DNA_Maverick 521832 522035 43 - . . scaffold557 GLEAN mRNA 517497 527707 0.973204 - . ID=CGI_10017992; scaffold1480 WUBlastX LINE_R2 137673 138350 203 - . . scaffold1480 GLEAN mRNA 131830 138953 0.535981 - . ID=CGI_10008637; scaffold43258 WUBlastX LINE_RTE-X 142825 143166 58 - . . scaffold43258 GLEAN mRNA 134740 154295 0.483992 + . ID=CGI_10009634; scaffold165 WUBlastX LTR_Gypsy 110645 110923 29 + . . scaffold165 GLEAN mRNA 100697 128503 0.998921 + . ID=CGI_10015315; scaffold211 WUBlastX LINE_CR1 969497 971362 1436 + . . scaffold211 GLEAN mRNA 954777 972416 0.999996 - . ID=CGI_10026971; scaffold211 WUBlastX LINE_CR1 971516 971800 180 + . . scaffold211 GLEAN mRNA 954777 972416 0.999996 - . ID=CGI_10026971; scaffold1301 WUBlastX LTR_Pao 625952 626239 197 - . . scaffold1301 GLEAN mRNA 619345 669752 0.288547 + . ID=CGI_10027735; scaffold794 WUBlastX LTR_Gypsy 281604 282245 122 + . . scaffold794 GLEAN mRNA 271227 282643 0.491343 - . ID=CGI_10017153; scaffold828 WUBlastX LTR_Gypsy 95908 95973 32 - . . scaffold828 GLEAN mRNA 93404 108093 0.999999 - . ID=CGI_10007366; scaffold413 WUBlastX LINE_L1-Tx1 11824 12150 40 - . . scaffold413 GLEAN mRNA 9716 19114 0.940957 - . ID=CGI_10022791; scaffold347 WUBlastX LINE_RTE-X 261027 261164 31 - . . scaffold347 GLEAN mRNA 231355 265361 0.350161 - . ID=CGI_10021787; scaffold53 WUBlastX DNA_Sola 1161171 1161596 230 - . . scaffold53 GLEAN mRNA 1154714 1165146 0.994946 + . ID=CGI_10026702; scaffold53 WUBlastX DNA_Sola 1161679 1161765 20 - . . scaffold53 GLEAN mRNA 1154714 1165146 0.994946 + . ID=CGI_10026702; scaffold40424 WUBlastX DNA_Sola 26286 26483 126 - . . scaffold40424 GLEAN mRNA 14342 47521 0.651302 - . ID=CGI_10004127; scaffold169 WUBlastX LTR_Gypsy 630806 632353 889 + . . scaffold169 GLEAN mRNA 628224 637732 0.973288 - . ID=CGI_10022960; scaffold37880 WUBlastX DNA_Harbinger 26692 26907 51 + . . scaffold37880 GLEAN mRNA 25813 26910 0.999833 + . ID=CGI_10002534; scaffold1001 WUBlastX LINE_L2 26515 27636 131 + . . scaffold1001 GLEAN mRNA 4766 38685 0.672255 - . ID=CGI_10007116; scaffold705 WUBlastX DNA_IS4EU 270578 271276 210 - . . scaffold705 GLEAN mRNA 270566 274142 1 - . ID=CGI_10015511; scaffold705 WUBlastX DNA_IS4EU 270578 271276 210 - . . scaffold705 GLEAN mRNA 254129 271765 0.501941 + . ID=CGI_10015510; scaffold118 WUBlastX LINE_L2 72595 73329 148 + . . scaffold118 GLEAN mRNA 64475 78115 0.835706 + . ID=CGI_10004583; scaffold1036 WUBlastX DNA_TcMar-Tc1 174808 175119 109 + . . scaffold1036 GLEAN mRNA 165168 179169 0.593142 - . ID=CGI_10019951; scaffold19 WUBlastX DNA_TcMar-Tc1 152712 153317 96 - . . scaffold19 GLEAN mRNA 151397 159937 0.999878 + . ID=CGI_10010837; scaffold163 WUBlastX LINE_L1-Tx1 113612 116365 1689 + . . scaffold163 GLEAN mRNA 112985 132830 0.606466 + . ID=CGI_10018612; scaffold396 WUBlastX DNA_hAT 406021 407418 213 + . . scaffold396 GLEAN mRNA 404152 407505 0.999676 + . ID=CGI_10018116; scaffold433 WUBlastX LTR_Ngaro 337600 338319 242 + . . scaffold433 GLEAN mRNA 321041 347867 0.999675 + . ID=CGI_10027064; scaffold1345 WUBlastX LTR_Gypsy 242357 242401 29 - . . scaffold1345 GLEAN mRNA 239892 251479 1 - . ID=CGI_10016283; scaffold1345 WUBlastX LTR_Gypsy 243514 243759 59 - . . scaffold1345 GLEAN mRNA 239892 251479 1 - . ID=CGI_10016283; scaffold1188 WUBlastX LTR_Gypsy-Cigr 205624 206739 178 - . . scaffold1188 GLEAN mRNA 201691 209926 0.974251 - . ID=CGI_10025462; scaffold1891 WUBlastX DNA_Harbinger 152059 152469 88 - . . scaffold1891 GLEAN mRNA 133537 158573 0.499706 - . ID=CGI_10008737; scaffold34106 WUBlastX LTR_DIRS 11323 11448 29 + . . scaffold34106 GLEAN mRNA 1207 14937 0.504518 - . ID=CGI_10001211; scaffold42530 WUBlastX LTR_Pao 40786 40956 37 - . . scaffold42530 GLEAN mRNA 40747 41325 0.518164 - . ID=CGI_10007160; scaffold513 WUBlastX LTR_Pao 9918 10640 418 + . . scaffold513 GLEAN mRNA 2113 39536 0.917684 + . ID=CGI_10022134; scaffold42766 WUBlastX DNA_hAT-Tip100 3287 3574 97 - . . scaffold42766 GLEAN mRNA 582 5602 0.982593 - . ID=CGI_10007660; scaffold1138 WUBlastX DNA_P 190172 191221 131 + . . scaffold1138 GLEAN mRNA 183755 192154 0.999676 - . ID=CGI_10015373; scaffold1138 WUBlastX DNA_P 190172 191221 131 + . . scaffold1138 GLEAN mRNA 186841 191383 0.716431 + . ID=CGI_10015374; scaffold1174 WUBlastX DNA_TcMar-Fot1 1089703 1090707 42 + . . scaffold1174 GLEAN mRNA 1080209 1093364 0.548358 + . ID=CGI_10026081; scaffold40134 WUBlastX LINE_RTE-X 69442 69819 143 + . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold40134 WUBlastX LINE_RTE-X 69975 70445 53 + . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold1191 WUBlastX DNA_MuDR 77269 77529 91 - . . scaffold1191 GLEAN mRNA 65394 88286 0.517666 - . ID=CGI_10005211; scaffold247 WUBlastX LINE_RTE-BovB 202505 202693 36 - . . scaffold247 GLEAN mRNA 197989 208519 0.419557 + . ID=CGI_10018593; scaffold247 WUBlastX LINE_RTE-BovB 202657 202938 107 - . . scaffold247 GLEAN mRNA 197989 208519 0.419557 + . ID=CGI_10018593; scaffold226 WUBlastX DNA_hAT 781794 782045 91 + . . scaffold226 GLEAN mRNA 780022 794397 0.995567 + . ID=CGI_10025375; scaffold226 WUBlastX DNA_hAT 780073 780750 134 + . . scaffold226 GLEAN mRNA 780022 794397 0.995567 + . ID=CGI_10025375; scaffold580 WUBlastX LTR_Gypsy-Troyk 545532 546152 234 + . . scaffold580 GLEAN mRNA 534985 547949 0.999377 + . ID=CGI_10020515; scaffold1866 WUBlastX LINE_CR1 223858 224175 40 + . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold368 WUBlastX DNA_Kolobok-IS4 88119 88631 54 + . . scaffold368 GLEAN mRNA 78208 92005 0.999415 - . ID=CGI_10018696; scaffold695 WUBlastX LINE_L1-Tx1 89729 89935 56 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold40134 WUBlastX LINE_RTE-X 70053 70409 117 + . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold143 WUBlastX LTR_Gypsy 42735 42983 37 - . . scaffold143 GLEAN mRNA 39157 75752 0.728522 + . ID=CGI_10010007; scaffold784 WUBlastX DNA_TcMar-Marin 908032 908340 198 - . . scaffold784 GLEAN mRNA 903046 922274 0.999676 + . ID=CGI_10024450; scaffold733 WUBlastX DNA_Kolobok 375970 376062 26 + . . scaffold733 GLEAN mRNA 372581 407469 0.843432 + . ID=CGI_10025875; scaffold149 WUBlastX DNA_Harbinger 1001157 1001276 97 + . . scaffold149 GLEAN mRNA 989278 1013104 0.999502 - . ID=CGI_10025337; scaffold149 WUBlastX DNA_Harbinger 1001157 1001276 97 + . . scaffold149 GLEAN mRNA 998861 1001294 1 + . ID=CGI_10025338; scaffold149 WUBlastX DNA_Harbinger 1002046 1002180 60 + . . scaffold149 GLEAN mRNA 989278 1013104 0.999502 - . ID=CGI_10025337; scaffold149 WUBlastX DNA_Harbinger 1002433 1002699 128 + . . scaffold149 GLEAN mRNA 989278 1013104 0.999502 - . ID=CGI_10025337; scaffold672 WUBlastX LINE_I 429552 430364 68 - . . scaffold672 GLEAN mRNA 429192 430364 0.999999 - . ID=CGI_10021041; scaffold41034 WUBlastX LTR_DIRS 57934 58020 54 + . . scaffold41034 GLEAN mRNA 40186 62880 0.65884 + . ID=CGI_10004651; scaffold41034 WUBlastX LTR_DIRS 58020 58382 187 + . . scaffold41034 GLEAN mRNA 40186 62880 0.65884 + . ID=CGI_10004651; scaffold508 WUBlastX LTR_Gypsy 15857 16240 99 - . . scaffold508 GLEAN mRNA 12073 17406 0.968836 - . ID=CGI_10011191; scaffold40104 WUBlastX DNA_Kolobok-IS4 37897 38400 168 - . . scaffold40104 GLEAN mRNA 23202 39290 0.364513 - . ID=CGI_10003867; scaffold1785 WUBlastX LINE_RTE-X 22792 23523 162 + . . scaffold1785 GLEAN mRNA 6322 29997 0.294917 - . ID=CGI_10024349; scaffold242 WUBlastX LTR_Pao 76093 76755 150 + . . scaffold242 GLEAN mRNA 75832 84666 0.771995 + . ID=CGI_10007083; scaffold82 WUBlastX LINE_L1-Tx1 687420 687830 79 - . . scaffold82 GLEAN mRNA 671230 690151 0.999877 - . ID=CGI_10025267; scaffold82 WUBlastX LINE_L1-Tx1 688533 688580 38 - . . scaffold82 GLEAN mRNA 671230 690151 0.999877 - . ID=CGI_10025267; scaffold563 WUBlastX LINE_R2-Hero 558888 559034 45 - . . scaffold563 GLEAN mRNA 542480 589820 0.135238 + . ID=CGI_10019846; scaffold1625 WUBlastX LINE_RTE-X 169773 170072 54 - . . scaffold1625 GLEAN mRNA 163230 175754 0.999993 - . ID=CGI_10007533; scaffold1625 WUBlastX LINE_RTE-X 170448 170879 189 - . . scaffold1625 GLEAN mRNA 163230 175754 0.999993 - . ID=CGI_10007533; scaffold1625 WUBlastX LINE_RTE-X 171968 172018 28 - . . scaffold1625 GLEAN mRNA 163230 175754 0.999993 - . ID=CGI_10007533; scaffold707 WUBlastX DNA_Harbinger 48490 48645 72 - . . scaffold707 GLEAN mRNA 28186 50322 0.998251 + . ID=CGI_10007721; scaffold1382 WUBlastX DNA_Harbinger 219830 219946 37 + . . scaffold1382 GLEAN mRNA 218944 220078 0.999189 + . ID=CGI_10011178; scaffold1382 WUBlastX DNA_Harbinger 219830 219946 37 + . . scaffold1382 GLEAN mRNA 212938 228080 0.974072 - . ID=CGI_10011177; scaffold716 WUBlastX LTR_Ngaro 331929 332879 260 + . . scaffold716 GLEAN mRNA 317907 344001 0.842692 + . ID=CGI_10014452; scaffold39778 WUBlastX LINE_RTE-X 43475 43642 88 + . . scaffold39778 GLEAN mRNA 34210 51922 0.521329 + . ID=CGI_10003608; scaffold365 WUBlastX LTR_Pao 253761 253859 32 + . . scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; scaffold365 WUBlastX LTR_Pao 251830 251889 28 + . . scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; scaffold347 WUBlastX LINE_CR1 129498 129683 98 + . . scaffold347 GLEAN mRNA 127096 135007 0.556255 - . ID=CGI_10021779; scaffold1097 WUBlastX LTR_Gypsy 862480 863232 123 + . . scaffold1097 GLEAN mRNA 848149 863853 0.999116 + . ID=CGI_10024555; scaffold1230 WUBlastX LINE_L1-Tx1 63646 64101 384 + . . scaffold1230 GLEAN mRNA 56388 93654 0.514803 - . ID=CGI_10004423; scaffold1230 WUBlastX LINE_L1-Tx1 63646 64101 384 + . . scaffold1230 GLEAN mRNA 61857 71757 0.544345 + . ID=CGI_10004424; scaffold35896 WUBlastX DNA_TcMar-Tc1 9932 10150 94 + . . scaffold35896 GLEAN mRNA 578 26444 0.497805 - . ID=CGI_10001642; scaffold43200 WUBlastX DNA_TcMar-Tc1 124591 125238 230 - . . scaffold43200 GLEAN mRNA 98578 129296 0.928438 + . ID=CGI_10009329; scaffold1213 WUBlastX LINE_L1-Tx1 420024 420203 117 + . . scaffold1213 GLEAN mRNA 408300 423198 0.400191 - . ID=CGI_10027450; scaffold870 WUBlastX DNA_hAT 49901 50056 52 + . . scaffold870 GLEAN mRNA 44819 52818 0.999949 + . ID=CGI_10007493; scaffold870 WUBlastX DNA_hAT 47456 47710 102 + . . scaffold870 GLEAN mRNA 44819 52818 0.999949 + . ID=CGI_10007493; scaffold870 WUBlastX DNA_hAT 48117 48317 143 + . . scaffold870 GLEAN mRNA 44819 52818 0.999949 + . ID=CGI_10007493; scaffold870 WUBlastX DNA_hAT 48777 48923 73 + . . scaffold870 GLEAN mRNA 44819 52818 0.999949 + . ID=CGI_10007493; scaffold870 WUBlastX DNA_hAT 49162 49272 46 + . . scaffold870 GLEAN mRNA 44819 52818 0.999949 + . ID=CGI_10007493; scaffold305 WUBlastX LINE_L1-Tx1 139200 140600 160 + . . scaffold305 GLEAN mRNA 133464 157357 0.544675 - . ID=CGI_10019118; scaffold39900 WUBlastX DNA_Maverick 64855 65370 162 + . . scaffold39900 GLEAN mRNA 63800 72994 0.885101 + . ID=CGI_10003685; scaffold42076 WUBlastX DNA_TcMar-Tc1 29547 30230 326 + . . scaffold42076 GLEAN mRNA 21711 47909 0.941371 + . ID=CGI_10006082; scaffold42364 WUBlastX LINE_L2 74217 75479 188 - . . scaffold42364 GLEAN mRNA 72172 88504 0.999923 + . ID=CGI_10006723; scaffold1507 WUBlastX LTR_Ngaro 12947 13423 145 + . . scaffold1507 GLEAN mRNA 8112 20039 0.965106 - . ID=CGI_10001768; C35532 WUBlastX LTR_Ngaro 12355 13257 381 - . . C35532 GLEAN mRNA 11931 21500 0.999947 - . ID=CGI_10001547; scaffold1670 WUBlastX LINE_L1-Tx1 463633 464223 102 - . . scaffold1670 GLEAN mRNA 448842 475285 0.99939 + . ID=CGI_10017627; scaffold754 WUBlastX LINE_L2 44092 45081 360 + . . scaffold754 GLEAN mRNA 34463 47005 0.401358 + . ID=CGI_10014062; scaffold140 WUBlastX LINE_L1-Tx1 365526 366317 385 - . . scaffold140 GLEAN mRNA 344940 369951 0.671174 - . ID=CGI_10020136; scaffold40172 WUBlastX LINE_L1-Tx1 12001 12177 45 + . . scaffold40172 GLEAN mRNA 6995 45177 0.895984 + . ID=CGI_10003930; scaffold40172 WUBlastX LINE_L1-Tx1 12176 12919 230 + . . scaffold40172 GLEAN mRNA 6995 45177 0.895984 + . ID=CGI_10003930; scaffold40172 WUBlastX LINE_L1-Tx1 12951 13388 73 + . . scaffold40172 GLEAN mRNA 6995 45177 0.895984 + . ID=CGI_10003930; scaffold1345 WUBlastX LTR_Gypsy 240272 240805 153 - . . scaffold1345 GLEAN mRNA 239892 251479 1 - . ID=CGI_10016283; scaffold334 WUBlastX LTR_Ngaro 787946 788860 404 - . . scaffold334 GLEAN mRNA 767755 789598 0.645847 - . ID=CGI_10025962; scaffold939 WUBlastX LTR_DIRS 104615 104803 33 - . . scaffold939 GLEAN mRNA 104320 109334 0.992629 - . ID=CGI_10008991; scaffold140 WUBlastX LINE_L1-Tx1 365261 365413 20 - . . scaffold140 GLEAN mRNA 344940 369951 0.671174 - . ID=CGI_10020136; scaffold853 WUBlastX LTR_Gypsy 453388 453915 114 - . . scaffold853 GLEAN mRNA 448693 455013 0.999949 - . ID=CGI_10017517; scaffold33980 WUBlastX LTR_Ngaro 10702 11067 257 - . . scaffold33980 GLEAN mRNA 2151 15835 0.664854 + . ID=CGI_10001168; scaffold1050 WUBlastX DNA_hAT 215008 215352 180 + . . scaffold1050 GLEAN mRNA 214951 218048 0.349007 + . ID=CGI_10009182; scaffold1050 WUBlastX DNA_hAT 215737 216276 126 + . . scaffold1050 GLEAN mRNA 214951 218048 0.349007 + . ID=CGI_10009182; scaffold1050 WUBlastX DNA_hAT 216432 216644 81 + . . scaffold1050 GLEAN mRNA 214951 218048 0.349007 + . ID=CGI_10009182; scaffold1050 WUBlastX DNA_hAT 217824 218045 98 + . . scaffold1050 GLEAN mRNA 214951 218048 0.349007 + . ID=CGI_10009182; C29438 WUBlastX LINE_RTE-X 4058 4372 173 + . . C29438 GLEAN mRNA 533 5889 1 + . ID=CGI_10000534; scaffold334 WUBlastX DNA_hAT 107528 107806 133 - . . scaffold334 GLEAN mRNA 104300 112166 0.460378 - . ID=CGI_10025911; scaffold334 WUBlastX DNA_hAT 107943 108047 40 - . . scaffold334 GLEAN mRNA 104300 112166 0.460378 - . ID=CGI_10025911; scaffold334 WUBlastX DNA_hAT 109000 109200 124 - . . scaffold334 GLEAN mRNA 104300 112166 0.460378 - . ID=CGI_10025911; scaffold1899 WUBlastX LINE_R2-Hero 259230 259328 24 - . . scaffold1899 GLEAN mRNA 252311 263688 0.999676 - . ID=CGI_10013616; scaffold1899 WUBlastX LINE_R2-Hero 259230 259328 24 - . . scaffold1899 GLEAN mRNA 252505 265918 0.435071 + . ID=CGI_10013617; scaffold31 WUBlastX DNA_Maverick 209131 210144 541 - . . scaffold31 GLEAN mRNA 202867 210562 0.991871 - . ID=CGI_10013561; scaffold672 WUBlastX LINE_RTE-X 191752 192597 547 - . . scaffold672 GLEAN mRNA 185206 197456 1 + . ID=CGI_10021027; scaffold143 WUBlastX LTR_Gypsy 39863 39982 20 - . . scaffold143 GLEAN mRNA 39157 75752 0.728522 + . ID=CGI_10010007; scaffold41650 WUBlastX LINE_L2 3844 4833 466 - . . scaffold41650 GLEAN mRNA 2732 34982 0.998592 + . ID=CGI_10005337; scaffold1665 WUBlastX LTR_Gypsy 222559 224274 558 + . . scaffold1665 GLEAN mRNA 220836 229215 0.994598 - . ID=CGI_10015206; scaffold57 WUBlastX DNA_hAT 300410 300712 136 + . . scaffold57 GLEAN mRNA 297762 301894 1 + . ID=CGI_10020550; scaffold1898 WUBlastX LTR_Pao 311637 312104 135 - . . scaffold1898 GLEAN mRNA 306186 312813 0.889712 + . ID=CGI_10012220; scaffold1833 WUBlastX RC_Helitron 61726 63102 363 + . . scaffold1833 GLEAN mRNA 49110 69658 0.917044 + . ID=CGI_10007300; scaffold340 WUBlastX DNA_IS4EU 218538 219605 307 + . . scaffold340 GLEAN mRNA 218224 224082 0.984022 - . ID=CGI_10011108; scaffold143 WUBlastX LTR_Gypsy 39951 40265 44 - . . scaffold143 GLEAN mRNA 39157 75752 0.728522 + . ID=CGI_10010007; scaffold393 WUBlastX LINE_RTE-X 1043376 1043525 33 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold77 WUBlastX LINE_RTE-BovB 949466 949882 367 + . . scaffold77 GLEAN mRNA 945677 960566 0.933688 - . ID=CGI_10028012; scaffold41954 WUBlastX LINE_RTE-X 130201 130344 30 - . . scaffold41954 GLEAN mRNA 128673 136852 1 + . ID=CGI_10005855; scaffold41954 WUBlastX LINE_RTE-X 130350 130490 25 - . . scaffold41954 GLEAN mRNA 128673 136852 1 + . ID=CGI_10005855; scaffold257 WUBlastX LTR_Gypsy 1097829 1098452 44 - . . scaffold257 GLEAN mRNA 1093944 1099430 0.999918 - . ID=CGI_10027941; scaffold58 WUBlastX LTR_Gypsy 571010 571918 57 - . . scaffold58 GLEAN mRNA 565797 572122 0.982335 - . ID=CGI_10023152; scaffold58 WUBlastX LTR_Gypsy 571010 571918 57 - . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; scaffold1014 WUBlastX LINE_L1-Tx1 591370 591849 279 - . . scaffold1014 GLEAN mRNA 561207 594372 0.621641 - . ID=CGI_10020275; scaffold432 WUBlastX LINE_L2 244495 245283 350 - . . scaffold432 GLEAN mRNA 235322 257919 0.999925 + . ID=CGI_10023091; scaffold1705 WUBlastX LTR_Gypsy-Cigr 98101 98499 166 + . . scaffold1705 GLEAN mRNA 68885 100114 0.343232 + . ID=CGI_10007468; scaffold72 WUBlastX LINE_RTE-BovB 157967 158533 276 - . . scaffold72 GLEAN mRNA 144323 162117 0.999415 + . ID=CGI_10017838; scaffold72 WUBlastX LINE_RTE-BovB 158535 159197 588 - . . scaffold72 GLEAN mRNA 144323 162117 0.999415 + . ID=CGI_10017838; scaffold38464 WUBlastX LTR_Ngaro 30440 30691 156 - . . scaffold38464 GLEAN mRNA 29156 32869 1 - . ID=CGI_10002793; scaffold38464 WUBlastX LTR_Ngaro 31194 31346 87 - . . scaffold38464 GLEAN mRNA 29156 32869 1 - . ID=CGI_10002793; scaffold852 WUBlastX LTR_Gypsy 70439 71233 76 - . . scaffold852 GLEAN mRNA 66203 74351 1 + . ID=CGI_10012036; scaffold41220 WUBlastX LINE_L2 71361 71672 40 - . . scaffold41220 GLEAN mRNA 56736 74140 0.470832 - . ID=CGI_10004855; scaffold619 WUBlastX LINE_Jockey 146389 146487 20 - . . scaffold619 GLEAN mRNA 133305 165039 0.859619 - . ID=CGI_10025755; scaffold1704 WUBlastX LTR_Gypsy 26672 26989 61 + . . scaffold1704 GLEAN mRNA 12405 27811 0.998148 + . ID=CGI_10010159; scaffold1081 WUBlastX LTR_Gypsy 164298 164504 44 + . . scaffold1081 GLEAN mRNA 151167 168373 0.603491 + . ID=CGI_10007686; scaffold30682 WUBlastX DNA_Harbinger 3189 3341 71 - . . scaffold30682 GLEAN mRNA 363 3344 1 - . ID=CGI_10000658; scaffold253 WUBlastX LTR_Gypsy 2582 2698 20 - . . scaffold253 GLEAN mRNA 2368 20050 0.999351 + . ID=CGI_10003487; scaffold547 WUBlastX DNA_Kolobok-IS4 431956 432198 20 - . . scaffold547 GLEAN mRNA 419498 445830 0.497938 - . ID=CGI_10018857; scaffold547 WUBlastX DNA_Kolobok-IS4 432225 432524 41 - . . scaffold547 GLEAN mRNA 419498 445830 0.497938 - . ID=CGI_10018857; scaffold191 WUBlastX DNA_P 574473 574643 42 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold6 WUBlastX LINE_Penelope 121744 122133 24 + . . scaffold6 GLEAN mRNA 120164 144778 0.978215 - . ID=CGI_10022297; scaffold101 WUBlastX DNA_TcMar-Tc1 676539 676628 23 - . . scaffold101 GLEAN mRNA 676539 710927 0.888019 - . ID=CGI_10021653; scaffold1245 WUBlastX DNA_TcMar-Marin 104370 104651 28 - . . scaffold1245 GLEAN mRNA 102403 119670 0.989696 - . ID=CGI_10009226; scaffold43526 WUBlastX LINE_RTE-X 38414 38530 38 + . . scaffold43526 GLEAN mRNA 36766 62971 0.985699 + . ID=CGI_10010784; scaffold1004 WUBlastX LINE_RTE-BovB 487249 487770 43 - . . scaffold1004 GLEAN mRNA 463295 491476 0.997732 - . ID=CGI_10020781; scaffold1097 WUBlastX LINE_RTE-X 717557 717940 22 - . . scaffold1097 GLEAN mRNA 684510 718767 0.99504 - . ID=CGI_10024542; scaffold481 WUBlastX DNA_hAT-Tip100 1053896 1053982 21 + . . scaffold481 GLEAN mRNA 1047969 1057631 0.5 - . ID=CGI_10027259; scaffold448 WUBlastX LTR_DIRS 29473 29712 64 - . . scaffold448 GLEAN mRNA 15813 30397 0.727338 + . ID=CGI_10024928; scaffold160 WUBlastX LINE_RTE-X 342487 342738 52 + . . scaffold160 GLEAN mRNA 341764 344858 1 + . ID=CGI_10020592; scaffold39642 WUBlastX LTR_Gypsy 1360 1590 23 + . . scaffold39642 GLEAN mRNA 1126 1641 0.776637 + . ID=CGI_10003493; scaffold1125 WUBlastX DNA_hAT 196307 196507 107 - . . scaffold1125 GLEAN mRNA 189933 228052 0.366465 - . ID=CGI_10012338; scaffold366 WUBlastX LTR_Pao 25495 25695 36 + . . scaffold366 GLEAN mRNA 4558 26262 1 + . ID=CGI_10007771; scaffold1603 WUBlastX LTR_Pao 333551 333682 47 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold1603 WUBlastX LTR_Pao 334130 334402 29 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold42584 WUBlastX LINE_CR1-L2 100207 100683 39 + . . scaffold42584 GLEAN mRNA 87388 105090 0.998677 + . ID=CGI_10007309; scaffold43008 WUBlastX LINE_L2 2579 2701 30 + . . scaffold43008 GLEAN mRNA 2147 17942 0.982229 + . ID=CGI_10008457; scaffold917 WUBlastX DNA_Crypton 178939 179385 48 - . . scaffold917 GLEAN mRNA 150992 179733 0.207364 - . ID=CGI_10011084; C26472 WUBlastX LTR_Gypsy 359 535 48 - . . C26472 GLEAN mRNA 44 535 0.999372 - . ID=CGI_10000305; scaffold43200 WUBlastX LINE_R2-Hero 123111 123443 71 + . . scaffold43200 GLEAN mRNA 98578 129296 0.928438 + . ID=CGI_10009329; scaffold343 WUBlastX RC_Helitron 615196 615486 39 - . . scaffold343 GLEAN mRNA 606783 616118 0.949663 + . ID=CGI_10021767; scaffold514 WUBlastX LTR_Gypsy 88753 88836 23 + . . scaffold514 GLEAN mRNA 67103 122805 0.383041 - . ID=CGI_10018346; scaffold678 WUBlastX LTR_Ngaro 88977 89324 23 - . . scaffold678 GLEAN mRNA 85525 97631 0.702112 + . ID=CGI_10026333; scaffold509 WUBlastX LINE_Penelope 61469 61666 64 - . . scaffold509 GLEAN mRNA 56462 67453 0.764061 - . ID=CGI_10018638; scaffold459 WUBlastX LINE_Penelope 459752 460141 53 - . . scaffold459 GLEAN mRNA 450027 467601 0.693067 - . ID=CGI_10018185; scaffold1870 WUBlastX LINE_L1 97026 97520 22 - . . scaffold1870 GLEAN mRNA 96078 123718 0.283709 - . ID=CGI_10013182; scaffold369 WUBlastX LINE_Penelope 161627 161860 42 + . . scaffold369 GLEAN mRNA 147278 163434 0.70167 + . ID=CGI_10006958; scaffold369 WUBlastX LINE_Penelope 162613 163017 21 + . . scaffold369 GLEAN mRNA 147278 163434 0.70167 + . ID=CGI_10006958; scaffold321 WUBlastX LINE_RTE-X 476954 477064 25 - . . scaffold321 GLEAN mRNA 474717 485753 0.439448 - . ID=CGI_10020812; scaffold57 WUBlastX LINE_RTE-BovB 446300 446407 56 - . . scaffold57 GLEAN mRNA 444980 452251 1 + . ID=CGI_10020561; scaffold40164 WUBlastX LINE_L1-Tx1 7681 7722 27 + . . scaffold40164 GLEAN mRNA 2839 12364 0.429437 - . ID=CGI_10003898; scaffold42904 WUBlastX LTR_Copia 94472 95047 32 - . . scaffold42904 GLEAN mRNA 87880 118208 0.944676 - . ID=CGI_10008103; scaffold818 WUBlastX LINE_CR1-L2 278621 278839 45 - . . scaffold818 GLEAN mRNA 276309 285154 0.988898 + . ID=CGI_10014515; scaffold3 WUBlastX LINE_CR1-L2 670386 670589 35 + . . scaffold3 GLEAN mRNA 666595 677011 1 + . ID=CGI_10027296; scaffold1016 WUBlastX LTR_Gypsy 311042 311100 90 + . . scaffold1016 GLEAN mRNA 310747 311100 0.968712 + . ID=CGI_10016895; scaffold41164 WUBlastX DNA_hAT 44968 45108 66 + . . scaffold41164 GLEAN mRNA 42098 45655 0.999053 + . ID=CGI_10004761; scaffold41164 WUBlastX DNA_hAT 45455 45652 64 + . . scaffold41164 GLEAN mRNA 42098 45655 0.999053 + . ID=CGI_10004761; scaffold734 WUBlastX LINE_CR1 20565 20867 87 - . . scaffold734 GLEAN mRNA 15567 24465 0.477862 - . ID=CGI_10003361; scaffold1782 WUBlastX DNA_Crypton 35297 35536 78 - . . scaffold1782 GLEAN mRNA 27311 46530 0.718451 + . ID=CGI_10004241; scaffold37010 WUBlastX LTR_DIRS 30925 31092 49 - . . scaffold37010 GLEAN mRNA 9826 38663 0.529667 + . ID=CGI_10002196; scaffold12 WUBlastX LTR_Gypsy 343561 343653 30 + . . scaffold12 GLEAN mRNA 326477 354530 0.999321 + . ID=CGI_10018042; scaffold619 WUBlastX LTR_Gypsy 1048060 1048311 24 - . . scaffold619 GLEAN mRNA 1046287 1056122 0.495318 - . ID=CGI_10025798; C28622 WUBlastX DNA_Harbinger 323 508 25 + . . C28622 GLEAN mRNA 14 5093 0.332993 + . ID=CGI_10000452; scaffold39394 WUBlastX DNA_Harbinger 28300 28677 61 + . . scaffold39394 GLEAN mRNA 22219 28975 0.74041 + . ID=CGI_10003357; scaffold36410 WUBlastX RC_Helitron 13955 14221 93 + . . scaffold36410 GLEAN mRNA 4689 21980 0.354487 - . ID=CGI_10001887; scaffold954 WUBlastX LINE_I 221010 221177 28 - . . scaffold954 GLEAN mRNA 220872 230195 0.904789 - . ID=CGI_10010745; scaffold156 WUBlastX DNA_Kolobok-Hyd 687921 688256 51 - . . scaffold156 GLEAN mRNA 669682 693584 0.721042 - . ID=CGI_10026516; scaffold986 WUBlastX LINE_L1 233183 233791 106 - . . scaffold986 GLEAN mRNA 229802 234961 0.889891 - . ID=CGI_10009965; scaffold402 WUBlastX LINE_L1 517177 517326 59 + . . scaffold402 GLEAN mRNA 514262 530560 0.999749 + . ID=CGI_10019333; scaffold1247 WUBlastX LINE_L1 112649 113146 61 + . . scaffold1247 GLEAN mRNA 96036 115392 0.95838 - . ID=CGI_10008945; scaffold1894 WUBlastX LINE_L1-Tx1 41994 42530 51 - . . scaffold1894 GLEAN mRNA 18177 67015 0.499328 - . ID=CGI_10013334; scaffold271 WUBlastX LINE_L1-Tx1 471244 471480 27 - . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold833 WUBlastX LINE_RTE-BovB 240516 240758 78 + . . scaffold833 GLEAN mRNA 240516 240821 0.96892 + . ID=CGI_10016737; scaffold113 WUBlastX LINE_RTE-X 52825 52863 22 + . . scaffold113 GLEAN mRNA 52825 53091 0.991235 + . ID=CGI_10021282; scaffold1138 WUBlastX LTR_Gypsy 175902 176087 38 + . . scaffold1138 GLEAN mRNA 174466 179423 0.789389 + . ID=CGI_10015372; scaffold421 WUBlastX LINE_L1-Tx1 174992 175471 28 - . . scaffold421 GLEAN mRNA 170277 178992 0.999676 + . ID=CGI_10012155; scaffold149 WUBlastX LINE_L1-Tx1 347825 348085 57 - . . scaffold149 GLEAN mRNA 308246 356402 0.217101 + . ID=CGI_10025300; scaffold115 WUBlastX DNA_hAT-Tip100 129499 129840 94 + . . scaffold115 GLEAN mRNA 126783 131612 1 - . ID=CGI_10021378; scaffold184 WUBlastX DNA_PiggyBac 251291 251701 57 - . . scaffold184 GLEAN mRNA 248871 256134 0.689082 + . ID=CGI_10014799; scaffold610 WUBlastX LINE_L2 239037 239354 79 - . . scaffold610 GLEAN mRNA 239004 244016 1 + . ID=CGI_10021102; scaffold211 WUBlastX LINE_CR1 698613 698894 58 - . . scaffold211 GLEAN mRNA 691120 715917 0.0754063 + . ID=CGI_10026960; scaffold387 WUBlastX LTR_Gypsy 28933 29073 106 - . . scaffold387 GLEAN mRNA 27360 40673 0.998991 + . ID=CGI_10004497; scaffold631 WUBlastX LINE_L2 132674 133078 90 - . . scaffold631 GLEAN mRNA 131392 145592 0.831917 - . ID=CGI_10014172; scaffold40556 WUBlastX LTR_Ngaro 11414 11701 87 - . . scaffold40556 GLEAN mRNA 9810 16493 0.715629 - . ID=CGI_10004250; scaffold1743 WUBlastX DNA_hAT-hAT5 208712 208873 64 + . . scaffold1743 GLEAN mRNA 206587 209579 0.614112 + . ID=CGI_10011657; scaffold1532 WUBlastX LTR_Gypsy 988091 988837 86 + . . scaffold1532 GLEAN mRNA 980578 997386 0.999875 - . ID=CGI_10028278; scaffold514 WUBlastX LTR_Gypsy 457183 457326 29 - . . scaffold514 GLEAN mRNA 444665 473776 0.661186 - . ID=CGI_10018365; scaffold40740 WUBlastX LINE_RTE-X 71838 72092 36 - . . scaffold40740 GLEAN mRNA 67016 76678 0.282731 - . ID=CGI_10004398; scaffold1868 WUBlastX LINE_RTE-X 169431 169607 25 + . . scaffold1868 GLEAN mRNA 166977 179463 0.984982 - . ID=CGI_10007985; scaffold40454 WUBlastX LINE_RTE-BovB 83456 83626 37 + . . scaffold40454 GLEAN mRNA 83347 90444 1 - . ID=CGI_10004122; scaffold35712 WUBlastX LINE_Proto2 6080 6178 21 + . . scaffold35712 GLEAN mRNA 3858 24173 0.47659 + . ID=CGI_10001589; scaffold146 WUBlastX LINE_CR1-L2 15977 16372 20 + . . scaffold146 GLEAN mRNA 11178 24512 0.999234 + . ID=CGI_10024878; scaffold891 WUBlastX DNA_En-Spm 191071 191367 28 + . . scaffold891 GLEAN mRNA 189251 197847 0.702385 + . ID=CGI_10009074; scaffold610 WUBlastX LTR_Gypsy 129884 130540 69 - . . scaffold610 GLEAN mRNA 126484 141606 0.728666 + . ID=CGI_10021092; scaffold1751 WUBlastX DNA_hAT-Blackja 11501 11800 83 - . . scaffold1751 GLEAN mRNA 1921 19795 0.705782 - . ID=CGI_10010082; scaffold482 WUBlastX DNA_IS4EU 188453 188971 74 + . . scaffold482 GLEAN mRNA 188426 188974 1 + . ID=CGI_10011000; scaffold1188 WUBlastX LINE_Penelope 216559 216909 67 + . . scaffold1188 GLEAN mRNA 212895 226684 0.80625 + . ID=CGI_10025463; scaffold1237 WUBlastX LTR_Gypsy 258559 259305 46 + . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold880 WUBlastX LTR_Gypsy 512023 512397 110 + . . scaffold880 GLEAN mRNA 490990 515117 0.998312 - . ID=CGI_10022196; scaffold482 WUBlastX DNA_IS4EU 188657 188971 120 + . . scaffold482 GLEAN mRNA 188426 188974 1 + . ID=CGI_10011000; scaffold425 WUBlastX DNA_IS4EU 128955 129554 117 + . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold1750 WUBlastX LINE_Jockey 17462 17530 24 + . . scaffold1750 GLEAN mRNA 8946 22537 0.686268 + . ID=CGI_10021461; scaffold1831 WUBlastX LINE_L1-Tx1 26579 26812 40 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold38048 WUBlastX DNA_TcMar-Tc1 33366 34202 93 + . . scaffold38048 GLEAN mRNA 5473 39952 0.557382 + . ID=CGI_10002589; scaffold3 WUBlastX LINE_RTE-X 50817 51062 81 + . . scaffold3 GLEAN mRNA 34173 61876 0.984416 - . ID=CGI_10027268; scaffold3 WUBlastX LINE_RTE-X 50817 51062 81 + . . scaffold3 GLEAN mRNA 47892 52805 0.999676 + . ID=CGI_10027269; scaffold86 WUBlastX LINE_RTE-BovB 1260162 1260389 105 - . . scaffold86 GLEAN mRNA 1231261 1279248 0.605603 + . ID=CGI_10028197; scaffold352 WUBlastX LTR_Copia 149833 149985 21 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold43302 WUBlastX DNA_Kolobok-IS4 15627 15950 54 + . . scaffold43302 GLEAN mRNA 6372 24073 0.277786 - . ID=CGI_10009755; scaffold1671 WUBlastX RC_Helitron 227283 227429 108 + . . scaffold1671 GLEAN mRNA 221124 227498 0.633477 + . ID=CGI_10015147; scaffold43 WUBlastX LINE_RTE-X 574597 574812 128 + . . scaffold43 GLEAN mRNA 558255 582492 0.807709 - . ID=CGI_10021361; scaffold1831 WUBlastX LTR_Gypsy 2588 3004 137 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold43272 WUBlastX DNA_Kolobok 114952 115074 61 - . . scaffold43272 GLEAN mRNA 114590 115074 1 - . ID=CGI_10009668; scaffold1244 WUBlastX LINE_L1 99931 100122 61 + . . scaffold1244 GLEAN mRNA 89223 101617 0.299139 + . ID=CGI_10020820; scaffold1107 WUBlastX LINE_L1 42293 42397 23 - . . scaffold1107 GLEAN mRNA 25384 68274 0.797312 + . ID=CGI_10004768; scaffold955 WUBlastX LINE_RTE-BovB 119552 119665 37 - . . scaffold955 GLEAN mRNA 102883 129964 0.99714 + . ID=CGI_10009853; scaffold85 WUBlastX LTR_Gypsy 634689 636224 51 - . . scaffold85 GLEAN mRNA 611975 636254 1 - . ID=CGI_10020719; scaffold40928 WUBlastX DNA_Kolobok 64910 65299 49 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold40680 WUBlastX DNA_Harbinger 27847 28113 40 + . . scaffold40680 GLEAN mRNA 27135 28116 0.500588 + . ID=CGI_10004354; scaffold40680 WUBlastX DNA_Harbinger 27847 28113 40 + . . scaffold40680 GLEAN mRNA 16 36776 0.246623 - . ID=CGI_10004353; scaffold79 WUBlastX LINE_L1-Tx1 886758 887360 35 - . . scaffold79 GLEAN mRNA 880710 892247 1 + . ID=CGI_10024653; scaffold290 WUBlastX LINE_L2 84299 84592 121 - . . scaffold290 GLEAN mRNA 78200 85856 0.613006 - . ID=CGI_10018533; scaffold760 WUBlastX LTR_Gypsy 800252 800416 58 - . . scaffold760 GLEAN mRNA 798582 806606 0.999169 - . ID=CGI_10024013; scaffold39196 WUBlastX RC_Helitron 37675 38247 113 - . . scaffold39196 GLEAN mRNA 18014 59804 0.5589 - . ID=CGI_10003215; scaffold593 WUBlastX LINE_RTE-BovB 483483 483854 54 - . . scaffold593 GLEAN mRNA 482551 496845 0.997605 + . ID=CGI_10022532; scaffold593 WUBlastX LINE_RTE-BovB 484677 485102 81 - . . scaffold593 GLEAN mRNA 482551 496845 0.997605 + . ID=CGI_10022532; scaffold401 WUBlastX LINE_RTE-X 156135 156413 99 - . . scaffold401 GLEAN mRNA 151217 157765 0.728444 + . ID=CGI_10006994; scaffold1703 WUBlastX DNA_Sola 316892 317053 119 - . . scaffold1703 GLEAN mRNA 316892 317053 0.865902 - . ID=CGI_10023053; scaffold616 WUBlastX LINE_RTE-BovB 317263 317913 309 + . . scaffold616 GLEAN mRNA 306388 329498 0.842956 - . ID=CGI_10015403; scaffold40 WUBlastX DNA_Academ 255366 255647 95 - . . scaffold40 GLEAN mRNA 252666 257460 0.323172 - . ID=CGI_10015106; scaffold43818 WUBlastX DNA_TcMar-Marin 276392 276826 169 + . . scaffold43818 GLEAN mRNA 259212 278747 0.997869 + . ID=CGI_10012774; scaffold1788 WUBlastX LINE_L1-Tx1 50580 50867 88 + . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold43794 WUBlastX LINE_RTE-X 97297 97785 86 - . . scaffold43794 GLEAN mRNA 82340 100661 0.914367 - . ID=CGI_10012417; scaffold1186 WUBlastX LTR_Gypsy 212758 214686 444 + . . scaffold1186 GLEAN mRNA 187396 222353 0.578632 + . ID=CGI_10010597; scaffold1021 WUBlastX RC_Helitron 692550 693317 295 + . . scaffold1021 GLEAN mRNA 692304 699453 0.992587 + . ID=CGI_10022506; scaffold1021 WUBlastX RC_Helitron 695388 695723 208 + . . scaffold1021 GLEAN mRNA 692304 699453 0.992587 + . ID=CGI_10022506; scaffold1757 WUBlastX DNA_Academ 43478 43816 47 - . . scaffold1757 GLEAN mRNA 43472 43939 0.579796 - . ID=CGI_10005113; scaffold447 WUBlastX LINE_CR1 337298 337948 34 - . . scaffold447 GLEAN mRNA 332382 354643 0.998297 + . ID=CGI_10014233; scaffold38292 WUBlastX LTR_Gypsy-Cigr 46434 47066 170 + . . scaffold38292 GLEAN mRNA 45996 48404 0.696819 + . ID=CGI_10002692; scaffold1031 WUBlastX DNA_IS4EU 207021 207359 152 + . . scaffold1031 GLEAN mRNA 202896 208011 0.999658 - . ID=CGI_10019698; scaffold172 WUBlastX LTR_Gypsy 16309 16446 59 + . . scaffold172 GLEAN mRNA 5002 17897 0.999274 - . ID=CGI_10013508; scaffold38552 WUBlastX DNA_TcMar-Tc2 40759 41754 179 + . . scaffold38552 GLEAN mRNA 40163 55847 0.999674 + . ID=CGI_10002839; scaffold1532 WUBlastX LINE_Penelope 958207 958854 160 + . . scaffold1532 GLEAN mRNA 956349 969868 0.999878 + . ID=CGI_10028276; scaffold1136 WUBlastX LINE_RTE-X 46060 46464 158 + . . scaffold1136 GLEAN mRNA 45613 63125 0.999895 + . ID=CGI_10003080; scaffold721 WUBlastX LINE_RTE-X 594330 594929 115 - . . scaffold721 GLEAN mRNA 582991 607417 0.998859 - . ID=CGI_10022014; scaffold1244 WUBlastX LINE_L1-Tx1 99599 99844 92 + . . scaffold1244 GLEAN mRNA 89223 101617 0.299139 + . ID=CGI_10020820; scaffold1259 WUBlastX LINE_L2 12676 13083 125 + . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold1753 WUBlastX RC_Helitron 43757 43867 24 + . . scaffold1753 GLEAN mRNA 42409 50828 0.996749 + . ID=CGI_10010802; scaffold1625 WUBlastX LINE_RTE-X 170379 170801 71 - . . scaffold1625 GLEAN mRNA 163230 175754 0.999993 - . ID=CGI_10007533; scaffold550 WUBlastX DNA_Academ 260564 260869 350 - . . scaffold550 GLEAN mRNA 260447 260869 0.579462 - . ID=CGI_10012496; scaffold1532 WUBlastX LTR_Ngaro 1133439 1133594 59 - . . scaffold1532 GLEAN mRNA 1127066 1152811 0.992288 + . ID=CGI_10028283; scaffold1736 WUBlastX LINE_RTE-X 627627 627938 26 - . . scaffold1736 GLEAN mRNA 617815 628143 0.537791 - . ID=CGI_10020987; scaffold1462 WUBlastX LINE_RTE-BovB 306404 306730 49 + . . scaffold1462 GLEAN mRNA 305995 331618 0.999054 - . ID=CGI_10014383; scaffold1462 WUBlastX LINE_RTE-BovB 306724 306948 90 + . . scaffold1462 GLEAN mRNA 305995 331618 0.999054 - . ID=CGI_10014383; scaffold53 WUBlastX DNA_Sola 1160613 1161602 182 - . . scaffold53 GLEAN mRNA 1154714 1165146 0.994946 + . ID=CGI_10026702; scaffold789 WUBlastX LINE_CR1 451402 452883 625 + . . scaffold789 GLEAN mRNA 449746 456527 1 + . ID=CGI_10017205; scaffold163 WUBlastX LTR_Gypsy-Cigr 480283 482130 822 + . . scaffold163 GLEAN mRNA 440738 483510 0.311673 + . ID=CGI_10018629; scaffold1714 WUBlastX LINE_L2 312035 312217 113 - . . scaffold1714 GLEAN mRNA 306589 325335 0.999557 + . ID=CGI_10013680; scaffold40104 WUBlastX DNA_Kolobok-IS4 35526 35732 21 + . . scaffold40104 GLEAN mRNA 23202 39290 0.364513 - . ID=CGI_10003867; scaffold952 WUBlastX LINE_L1-Tx1 23431 23994 51 + . . scaffold952 GLEAN mRNA 12544 26052 0.999676 + . ID=CGI_10002898; scaffold1244 WUBlastX LTR_Gypsy 124927 125337 376 - . . scaffold1244 GLEAN mRNA 121009 134472 0.646055 + . ID=CGI_10020823; scaffold1244 WUBlastX LTR_Gypsy 126543 126998 162 - . . scaffold1244 GLEAN mRNA 121009 134472 0.646055 + . ID=CGI_10020823; scaffold85 WUBlastX LTR_Gypsy-Cigr 635274 635873 194 - . . scaffold85 GLEAN mRNA 611975 636254 1 - . ID=CGI_10020719; scaffold499 WUBlastX LTR_DIRS 250189 251064 89 + . . scaffold499 GLEAN mRNA 249813 257188 0.581333 - . ID=CGI_10015767; scaffold481 WUBlastX LINE_L2 1216428 1217159 174 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold1301 WUBlastX LTR_Pao 627195 627569 130 - . . scaffold1301 GLEAN mRNA 619345 669752 0.288547 + . ID=CGI_10027735; scaffold1301 WUBlastX LTR_Pao 627496 627915 221 - . . scaffold1301 GLEAN mRNA 619345 669752 0.288547 + . ID=CGI_10027735; scaffold804 WUBlastX LTR_Gypsy 169285 169914 158 - . . scaffold804 GLEAN mRNA 160406 170673 0.986312 - . ID=CGI_10014856; scaffold150 WUBlastX LINE_CR1-L2 1610570 1610653 64 + . . scaffold150 GLEAN mRNA 1609311 1613969 0.550073 + . ID=CGI_10028691; scaffold1037 WUBlastX LTR_DIRS? 345315 345644 200 + . . scaffold1037 GLEAN mRNA 341684 347440 0.722718 + . ID=CGI_10017464; scaffold40680 WUBlastX DNA_Harbinger 27337 27693 144 + . . scaffold40680 GLEAN mRNA 27135 28116 0.500588 + . ID=CGI_10004354; scaffold40680 WUBlastX DNA_Harbinger 27337 27693 144 + . . scaffold40680 GLEAN mRNA 16 36776 0.246623 - . ID=CGI_10004353; scaffold619 WUBlastX DNA_hAT-Ac 487930 488070 27 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold1894 WUBlastX LINE_L1-Tx1 40775 41068 47 - . . scaffold1894 GLEAN mRNA 18177 67015 0.499328 - . ID=CGI_10013334; scaffold37500 WUBlastX LINE_L2 27306 28184 479 - . . scaffold37500 GLEAN mRNA 16467 40519 0.193393 - . ID=CGI_10002382; scaffold37500 WUBlastX LINE_L2 28172 28699 321 - . . scaffold37500 GLEAN mRNA 16467 40519 0.193393 - . ID=CGI_10002382; scaffold37500 WUBlastX LINE_L2 28678 29166 277 - . . scaffold37500 GLEAN mRNA 16467 40519 0.193393 - . ID=CGI_10002382; scaffold37500 WUBlastX LINE_L2 29154 30365 464 - . . scaffold37500 GLEAN mRNA 16467 40519 0.193393 - . ID=CGI_10002382; scaffold313 WUBlastX LTR_Ngaro 1024363 1024755 127 - . . scaffold313 GLEAN mRNA 1014206 1026476 0.354197 - . ID=CGI_10026633; scaffold351 WUBlastX LINE_Penelope 102689 103408 167 + . . scaffold351 GLEAN mRNA 94305 104490 0.817501 - . ID=CGI_10022591; scaffold152 WUBlastX LINE_L1-Tx1 335060 335581 223 - . . scaffold152 GLEAN mRNA 326766 349856 0.295405 + . ID=CGI_10014899; scaffold1 WUBlastX LINE_L2 170615 170980 46 + . . scaffold1 GLEAN mRNA 163980 185527 0.742263 + . ID=CGI_10013469; scaffold77 WUBlastX DNA_Zator 959901 960446 147 - . . scaffold77 GLEAN mRNA 957081 962570 1 + . ID=CGI_10028013; scaffold77 WUBlastX DNA_Zator 959901 960446 147 - . . scaffold77 GLEAN mRNA 945677 960566 0.933688 - . ID=CGI_10028012; scaffold77 WUBlastX DNA_Zator 960576 960713 75 - . . scaffold77 GLEAN mRNA 957081 962570 1 + . ID=CGI_10028013; scaffold77 WUBlastX DNA_Zator 960825 961166 20 - . . scaffold77 GLEAN mRNA 957081 962570 1 + . ID=CGI_10028013; scaffold632 WUBlastX LTR_Pao 94232 95134 101 + . . scaffold632 GLEAN mRNA 94211 107626 0.991776 + . ID=CGI_10018438; scaffold241 WUBlastX LTR_Pao 82338 83054 228 + . . scaffold241 GLEAN mRNA 81964 102317 0.534439 + . ID=CGI_10025091; scaffold241 WUBlastX LTR_Pao 83174 83869 256 + . . scaffold241 GLEAN mRNA 81964 102317 0.534439 + . ID=CGI_10025091; scaffold241 WUBlastX LTR_Pao 84135 84611 321 + . . scaffold241 GLEAN mRNA 81964 102317 0.534439 + . ID=CGI_10025091; scaffold19 WUBlastX LTR_DIRS 198993 199169 43 + . . scaffold19 GLEAN mRNA 192266 206861 0.651568 + . ID=CGI_10010840; scaffold336 WUBlastX LINE_L2 216939 217262 168 - . . scaffold336 GLEAN mRNA 208327 217851 1 - . ID=CGI_10012569; scaffold43878 WUBlastX LINE_L1-Tx1 34233 34763 137 - . . scaffold43878 GLEAN mRNA 19366 41477 0.131804 - . ID=CGI_10013710; scaffold37430 WUBlastX LTR_Pao 40634 41149 225 - . . scaffold37430 GLEAN mRNA 25525 41907 0.539363 + . ID=CGI_10002358; scaffold531 WUBlastX DNA_Academ 26386 26589 68 - . . scaffold531 GLEAN mRNA 22748 29196 0.526203 - . ID=CGI_10014486; scaffold226 WUBlastX LTR_DIRS 463070 463951 116 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold203 WUBlastX LINE_RTE-X 628610 629374 103 - . . scaffold203 GLEAN mRNA 599632 671214 0.810319 + . ID=CGI_10021081; scaffold198 WUBlastX LTR_Gypsy 549026 550378 219 + . . scaffold198 GLEAN mRNA 532542 554203 0.338011 + . ID=CGI_10027815; scaffold1625 WUBlastX LINE_RTE-X 171688 171828 34 - . . scaffold1625 GLEAN mRNA 163230 175754 0.999993 - . ID=CGI_10007533; scaffold39134 WUBlastX LTR_Gypsy 49506 50201 191 + . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold853 WUBlastX LTR_Gypsy 450000 450521 220 - . . scaffold853 GLEAN mRNA 448693 455013 0.999949 - . ID=CGI_10017517; scaffold911 WUBlastX LTR_Gypsy 95487 95957 44 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX LTR_Gypsy 96988 97161 86 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold733 WUBlastX LTR_Gypsy 38891 39604 119 + . . scaffold733 GLEAN mRNA 37672 49158 0.939016 - . ID=CGI_10025863; scaffold186 WUBlastX DNA_Harbinger 24112 24330 67 + . . scaffold186 GLEAN mRNA 23019 24333 0.349537 + . ID=CGI_10012601; scaffold41628 WUBlastX DNA_TcMar-Pogo 41673 42359 262 - . . scaffold41628 GLEAN mRNA 32984 49364 0.999676 - . ID=CGI_10005328; scaffold610 WUBlastX LTR_Ngaro 280742 281446 216 - . . scaffold610 GLEAN mRNA 278888 282376 0.9996 + . ID=CGI_10021107; scaffold885 WUBlastX LINE_L1-Tx1 1010670 1011041 41 + . . scaffold885 GLEAN mRNA 1005329 1048267 0.991835 - . ID=CGI_10025234; scaffold77 WUBlastX LTR_Gypsy 1453959 1454867 232 - . . scaffold77 GLEAN mRNA 1435771 1455368 0.401661 + . ID=CGI_10028040; scaffold896 WUBlastX LINE_L1 247183 247329 42 + . . scaffold896 GLEAN mRNA 238310 251019 0.969948 - . ID=CGI_10022839; scaffold191 WUBlastX DNA_Kolobok 206071 206409 74 - . . scaffold191 GLEAN mRNA 205783 209379 0.997333 - . ID=CGI_10022416; scaffold191 WUBlastX DNA_Kolobok 206517 206783 40 - . . scaffold191 GLEAN mRNA 205783 209379 0.997333 - . ID=CGI_10022416; scaffold630 WUBlastX LTR_Gypsy 377917 378702 280 - . . scaffold630 GLEAN mRNA 373403 389900 0.98161 - . ID=CGI_10018333; scaffold86 WUBlastX DNA_Kolobok 150576 150815 86 - . . scaffold86 GLEAN mRNA 141744 153852 0.999675 - . ID=CGI_10028139; scaffold86 WUBlastX DNA_Kolobok 151506 151718 68 - . . scaffold86 GLEAN mRNA 141744 153852 0.999675 - . ID=CGI_10028139; scaffold288 WUBlastX LINE_L1 210555 210725 91 - . . scaffold288 GLEAN mRNA 165543 215886 0.392804 - . ID=CGI_10020660; scaffold3 WUBlastX LTR_Ngaro 1315370 1315882 128 - . . scaffold3 GLEAN mRNA 1314645 1318382 0.999612 - . ID=CGI_10027337; scaffold101 WUBlastX DNA_MuDR 677102 677353 31 + . . scaffold101 GLEAN mRNA 676539 710927 0.888019 - . ID=CGI_10021653; scaffold976 WUBlastX LTR_Gypsy 56797 58854 1634 + . . scaffold976 GLEAN mRNA 40652 60127 0.884558 - . ID=CGI_10014002; scaffold1423 WUBlastX DNA_Harbinger 672101 672412 129 + . . scaffold1423 GLEAN mRNA 653919 675880 0.821976 - . ID=CGI_10025436; scaffold1423 WUBlastX DNA_Harbinger 672412 672507 54 + . . scaffold1423 GLEAN mRNA 653919 675880 0.821976 - . ID=CGI_10025436; scaffold1423 WUBlastX DNA_Harbinger 672506 672619 73 + . . scaffold1423 GLEAN mRNA 653919 675880 0.821976 - . ID=CGI_10025436; scaffold37532 WUBlastX LTR_Gypsy 31830 32144 192 - . . scaffold37532 GLEAN mRNA 24867 43092 0.82218 + . ID=CGI_10002401; scaffold37532 WUBlastX LTR_Gypsy 32129 33166 94 - . . scaffold37532 GLEAN mRNA 24867 43092 0.82218 + . ID=CGI_10002401; scaffold847 WUBlastX LINE_RTE-X 281236 281631 161 - . . scaffold847 GLEAN mRNA 273681 282893 0.998253 - . ID=CGI_10022270; scaffold723 WUBlastX LTR_Gypsy 206039 208108 1586 - . . scaffold723 GLEAN mRNA 194118 214562 0.999791 - . ID=CGI_10015263; scaffold930 WUBlastX DNA_Merlin 240001 240234 40 + . . scaffold930 GLEAN mRNA 232511 243304 0.84036 - . ID=CGI_10010203; scaffold925 WUBlastX DNA_Sola 282703 282954 45 + . . scaffold925 GLEAN mRNA 265784 299058 0.996279 - . ID=CGI_10017423; scaffold406 WUBlastX LTR_Gypsy 63900 64070 58 - . . scaffold406 GLEAN mRNA 63105 78647 0.760341 - . ID=CGI_10023839; scaffold1826 WUBlastX LTR_Gypsy 41151 41345 102 + . . scaffold1826 GLEAN mRNA 39665 57424 0.756838 + . ID=CGI_10006241; scaffold102 WUBlastX LTR_Ngaro 644449 644808 212 + . . scaffold102 GLEAN mRNA 643973 666734 0.499984 + . ID=CGI_10028445; scaffold102 WUBlastX LTR_Ngaro 644778 645155 94 + . . scaffold102 GLEAN mRNA 643973 666734 0.499984 + . ID=CGI_10028445; scaffold1772 WUBlastX LTR_DIRS 202486 202557 35 - . . scaffold1772 GLEAN mRNA 201858 204314 0.999554 - . ID=CGI_10014812; scaffold59 WUBlastX LTR_Ngaro 71383 71637 37 - . . scaffold59 GLEAN mRNA 68986 78873 0.61656 - . ID=CGI_10011272; scaffold41786 WUBlastX DNA_hAT-Tip100 110005 110316 144 + . . scaffold41786 GLEAN mRNA 109063 112441 0.994534 + . ID=CGI_10005626; scaffold41786 WUBlastX DNA_hAT-Tip100 111514 111771 42 + . . scaffold41786 GLEAN mRNA 109063 112441 0.994534 + . ID=CGI_10005626; scaffold733 WUBlastX DNA_Kolobok 374869 375153 132 + . . scaffold733 GLEAN mRNA 372581 407469 0.843432 + . ID=CGI_10025875; scaffold733 WUBlastX DNA_Kolobok 375742 375828 23 + . . scaffold733 GLEAN mRNA 372581 407469 0.843432 + . ID=CGI_10025875; scaffold733 WUBlastX DNA_Kolobok 377317 377553 103 + . . scaffold733 GLEAN mRNA 372581 407469 0.843432 + . ID=CGI_10025875; scaffold583 WUBlastX LINE_L1-Tx1 28713 29648 275 - . . scaffold583 GLEAN mRNA 11252 30786 0.538908 + . ID=CGI_10023603; scaffold243 WUBlastX DNA_hAT-Tip100 43015 43761 291 + . . scaffold243 GLEAN mRNA 30219 44504 0.996041 + . ID=CGI_10006813; scaffold619 WUBlastX DNA_hAT-hATw 952227 953405 254 + . . scaffold619 GLEAN mRNA 949722 959476 0.544338 - . ID=CGI_10025794; scaffold870 WUBlastX DNA_hAT 48506 48700 57 + . . scaffold870 GLEAN mRNA 44819 52818 0.999949 + . ID=CGI_10007493; scaffold1154 WUBlastX LTR_DIRS 329125 329466 167 + . . scaffold1154 GLEAN mRNA 300263 342126 0.0862783 - . ID=CGI_10026162; scaffold88 WUBlastX LINE_L1 25372 26298 307 - . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX LINE_L1 25372 26298 307 - . . scaffold88 GLEAN mRNA 22316 33699 0.444301 - . ID=CGI_10011115; scaffold520 WUBlastX LTR_Ngaro 160063 160827 334 + . . scaffold520 GLEAN mRNA 155699 161242 0.98619 + . ID=CGI_10010955; scaffold1221 WUBlastX LTR_Gypsy 69329 69430 25 - . . scaffold1221 GLEAN mRNA 56411 69596 0.696179 + . ID=CGI_10019728; scaffold544 WUBlastX LINE_L1-Tx1 209740 209811 22 - . . scaffold544 GLEAN mRNA 202069 215253 0.999676 + . ID=CGI_10022552; scaffold352 WUBlastX DNA_PiggyBac 311542 311691 43 + . . scaffold352 GLEAN mRNA 309286 319403 1 + . ID=CGI_10012251; scaffold352 WUBlastX DNA_PiggyBac 312283 312783 306 + . . scaffold352 GLEAN mRNA 309286 319403 1 + . ID=CGI_10012251; scaffold43686 WUBlastX LTR_Gypsy 187639 188532 22 - . . scaffold43686 GLEAN mRNA 172665 193661 0.978405 - . ID=CGI_10011758; scaffold1179 WUBlastX LTR_Gypsy 22967 23077 64 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold168 WUBlastX LINE_RTE-X 19689 20042 58 - . . scaffold168 GLEAN mRNA 17788 42641 0.990039 - . ID=CGI_10025582; scaffold168 WUBlastX LINE_RTE-X 20158 20283 58 - . . scaffold168 GLEAN mRNA 17788 42641 0.990039 - . ID=CGI_10025582; scaffold168 WUBlastX LINE_RTE-X 20356 20673 133 - . . scaffold168 GLEAN mRNA 17788 42641 0.990039 - . ID=CGI_10025582; scaffold168 WUBlastX LINE_RTE-X 20688 21128 111 - . . scaffold168 GLEAN mRNA 17788 42641 0.990039 - . ID=CGI_10025582; scaffold43616 WUBlastX LINE_RTE-X 205391 206047 405 - . . scaffold43616 GLEAN mRNA 187064 211275 0.700682 + . ID=CGI_10011425; scaffold950 WUBlastX LINE_L2 390700 391374 126 - . . scaffold950 GLEAN mRNA 384027 397632 0.588964 + . ID=CGI_10022929; scaffold41372 WUBlastX LINE_L1-Tx1 70710 71816 100 - . . scaffold41372 GLEAN mRNA 67893 79286 0.261998 + . ID=CGI_10005012; scaffold787 WUBlastX DNA_hAT-Blackja 233852 235051 351 - . . scaffold787 GLEAN mRNA 219328 253031 0.970021 - . ID=CGI_10011650; scaffold122 WUBlastX DNA_Kolobok 255083 255343 94 - . . scaffold122 GLEAN mRNA 255059 255627 0.999999 - . ID=CGI_10011880; scaffold122 WUBlastX DNA_Kolobok 255466 255627 114 - . . scaffold122 GLEAN mRNA 255059 255627 0.999999 - . ID=CGI_10011880; scaffold41054 WUBlastX DNA_TcMar-Marin 35884 36171 167 - . . scaffold41054 GLEAN mRNA 15508 39181 0.98779 - . ID=CGI_10004673; scaffold40928 WUBlastX LINE_CR1 40258 40599 256 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold39268 WUBlastX LINE_L2 18960 19391 220 + . . scaffold39268 GLEAN mRNA 16420 27530 0.768779 - . ID=CGI_10003274; scaffold1036 WUBlastX DNA_Maverick 203247 203441 62 - . . scaffold1036 GLEAN mRNA 202062 206192 0.444605 - . ID=CGI_10019953; scaffold541 WUBlastX LINE_Proto2 468414 471029 276 + . . scaffold541 GLEAN mRNA 466590 480582 0.782383 + . ID=CGI_10022394; scaffold347 WUBlastX LINE_CR1 129671 130255 257 + . . scaffold347 GLEAN mRNA 127096 135007 0.556255 - . ID=CGI_10021779; scaffold35712 WUBlastX LINE_RTE-X 5642 6160 99 + . . scaffold35712 GLEAN mRNA 3858 24173 0.47659 + . ID=CGI_10001589; scaffold1213 WUBlastX LINE_L1-Tx1 420221 420949 207 + . . scaffold1213 GLEAN mRNA 408300 423198 0.400191 - . ID=CGI_10027450; scaffold1345 WUBlastX LTR_Gypsy 240230 240706 179 - . . scaffold1345 GLEAN mRNA 239892 251479 1 - . ID=CGI_10016283; scaffold1811 WUBlastX DNA_Kolobok-IS4 66420 67040 445 - . . scaffold1811 GLEAN mRNA 66417 67040 1 - . ID=CGI_10004796; scaffold5 WUBlastX LTR_DIRS 47579 48385 443 + . . scaffold5 GLEAN mRNA 43954 49424 0.676364 + . ID=CGI_10012924; scaffold5 WUBlastX LTR_DIRS 47579 48385 443 + . . scaffold5 GLEAN mRNA 46548 64040 0.730165 - . ID=CGI_10012925; scaffold382 WUBlastX DNA_IS4EU 41809 42723 440 + . . scaffold382 GLEAN mRNA 40511 73048 0.0752347 + . ID=CGI_10004503; scaffold43008 WUBlastX LINE_L1-Tx1 84603 84791 54 - . . scaffold43008 GLEAN mRNA 78684 87806 0.543465 - . ID=CGI_10008462; scaffold334 WUBlastX DNA_hAT 107061 107180 48 - . . scaffold334 GLEAN mRNA 104300 112166 0.460378 - . ID=CGI_10025911; scaffold334 WUBlastX DNA_hAT 105478 105606 52 - . . scaffold334 GLEAN mRNA 104300 112166 0.460378 - . ID=CGI_10025911; scaffold334 WUBlastX DNA_hAT 105997 106095 43 - . . scaffold334 GLEAN mRNA 104300 112166 0.460378 - . ID=CGI_10025911; scaffold42648 WUBlastX LTR_Pao 173318 174499 37 - . . scaffold42648 GLEAN mRNA 167771 174774 0.98388 - . ID=CGI_10007395; scaffold1729 WUBlastX LTR_Ngaro 197998 198885 490 + . . scaffold1729 GLEAN mRNA 196724 202355 0.822484 + . ID=CGI_10008492; scaffold954 WUBlastX DNA_Academ 183943 184182 397 - . . scaffold954 GLEAN mRNA 183919 184182 0.57353 - . ID=CGI_10010744; scaffold905 WUBlastX LINE_L1-Tx1 4952 5692 304 + . . scaffold905 GLEAN mRNA 3174 14725 0.840832 + . ID=CGI_10004338; scaffold41816 WUBlastX LINE_RTE-X 85301 85873 74 - . . scaffold41816 GLEAN mRNA 84334 89370 0.999542 + . ID=CGI_10005649; scaffold41816 WUBlastX LINE_RTE-X 86966 87373 21 - . . scaffold41816 GLEAN mRNA 84334 89370 0.999542 + . ID=CGI_10005649; scaffold366 WUBlastX DNA_Harbinger 107351 107827 419 + . . scaffold366 GLEAN mRNA 106879 123133 0.490969 + . ID=CGI_10007776; scaffold1347 WUBlastX DNA_Maverick 325913 326254 213 + . . scaffold1347 GLEAN mRNA 315464 333991 0.924019 + . ID=CGI_10012984; scaffold1084 WUBlastX LTR_DIRS 173927 174190 73 + . . scaffold1084 GLEAN mRNA 168340 187154 0.999572 + . ID=CGI_10010079; scaffold1084 WUBlastX LTR_DIRS 174759 174977 60 + . . scaffold1084 GLEAN mRNA 168340 187154 0.999572 + . ID=CGI_10010079; scaffold1084 WUBlastX LTR_DIRS 174829 176247 325 + . . scaffold1084 GLEAN mRNA 168340 187154 0.999572 + . ID=CGI_10010079; scaffold1084 WUBlastX LTR_DIRS 176231 176422 47 + . . scaffold1084 GLEAN mRNA 168340 187154 0.999572 + . ID=CGI_10010079; scaffold410 WUBlastX LTR_DIRS 299546 300592 554 - . . scaffold410 GLEAN mRNA 298599 310174 0.996652 + . ID=CGI_10020635; scaffold43290 WUBlastX LINE_L2 208678 209751 512 + . . scaffold43290 GLEAN mRNA 208134 214602 0.737369 + . ID=CGI_10009648; scaffold1209 WUBlastX LINE_L1-Tx1 26308 27849 369 - . . scaffold1209 GLEAN mRNA 16133 36287 0.961312 - . ID=CGI_10007964; C34856 WUBlastX LTR_Gypsy 7920 8885 469 - . . C34856 GLEAN mRNA 131 10544 0.998639 + . ID=CGI_10001362; C34856 WUBlastX LTR_Gypsy 8860 9027 207 - . . C34856 GLEAN mRNA 131 10544 0.998639 + . ID=CGI_10001362; scaffold4 WUBlastX LINE_L1 476461 476544 42 - . . scaffold4 GLEAN mRNA 463325 481913 0.998731 + . ID=CGI_10021180; scaffold77 WUBlastX DNA_hAT-hATw 656125 657138 78 + . . scaffold77 GLEAN mRNA 654725 664026 0.999581 + . ID=CGI_10027987; scaffold1360 WUBlastX LINE_RTE-BovB 39707 40006 163 - . . scaffold1360 GLEAN mRNA 19050 50648 0.715639 + . ID=CGI_10022624; scaffold1360 WUBlastX LINE_RTE-BovB 40089 40307 97 - . . scaffold1360 GLEAN mRNA 19050 50648 0.715639 + . ID=CGI_10022624; scaffold1360 WUBlastX LINE_RTE-BovB 40305 40769 285 - . . scaffold1360 GLEAN mRNA 19050 50648 0.715639 + . ID=CGI_10022624; scaffold1360 WUBlastX LINE_RTE-BovB 40822 41097 104 - . . scaffold1360 GLEAN mRNA 19050 50648 0.715639 + . ID=CGI_10022624; scaffold6 WUBlastX LINE_L1 187315 188343 365 + . . scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; scaffold43280 WUBlastX LTR_Gypsy 170155 170316 39 + . . scaffold43280 GLEAN mRNA 132335 177835 0.651964 - . ID=CGI_10009657; scaffold509 WUBlastX LTR_Ngaro 92550 93251 459 + . . scaffold509 GLEAN mRNA 91758 98346 0.858612 - . ID=CGI_10018642; scaffold509 WUBlastX LTR_Ngaro 93259 93630 215 + . . scaffold509 GLEAN mRNA 91758 98346 0.858612 - . ID=CGI_10018642; scaffold683 WUBlastX LINE_RTE-X 85741 85944 53 - . . scaffold683 GLEAN mRNA 80657 98109 0.999674 + . ID=CGI_10010356; scaffold393 WUBlastX LINE_RTE-X 1042826 1042972 36 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold1376 WUBlastX LINE_L1-Tx1 42742 44460 429 - . . scaffold1376 GLEAN mRNA 39109 52499 0.502849 - . ID=CGI_10002795; scaffold674 WUBlastX LTR_Ngaro 12937 14466 678 + . . scaffold674 GLEAN mRNA 11758 15607 0.993811 + . ID=CGI_10002488; scaffold393 WUBlastX LINE_RTE-X 1041837 1042193 33 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold1189 WUBlastX LINE_L1-Tx1 633958 634836 129 - . . scaffold1189 GLEAN mRNA 632624 639695 1 - . ID=CGI_10023828; scaffold1189 WUBlastX LINE_L1-Tx1 634946 635554 344 - . . scaffold1189 GLEAN mRNA 632624 639695 1 - . ID=CGI_10023828; scaffold1189 WUBlastX LINE_L1-Tx1 636354 636728 64 - . . scaffold1189 GLEAN mRNA 632624 639695 1 - . ID=CGI_10023828; scaffold469 WUBlastX LTR_Pao 621539 622150 345 - . . scaffold469 GLEAN mRNA 620008 639653 0.99956 + . ID=CGI_10024690; scaffold43538 WUBlastX LTR_Gypsy 11092 11373 150 + . . scaffold43538 GLEAN mRNA 10395 14337 0.902653 + . ID=CGI_10010812; scaffold43538 WUBlastX LTR_Gypsy 12380 12730 344 + . . scaffold43538 GLEAN mRNA 10395 14337 0.902653 + . ID=CGI_10010812; scaffold458 WUBlastX LTR_Ngaro 172638 172910 63 + . . scaffold458 GLEAN mRNA 171659 179488 0.10231 + . ID=CGI_10013591; scaffold458 WUBlastX LTR_Ngaro 176393 176665 63 + . . scaffold458 GLEAN mRNA 171659 179488 0.10231 + . ID=CGI_10013591; scaffold1322 WUBlastX LINE_RTE-X 366937 368628 612 - . . scaffold1322 GLEAN mRNA 366517 374727 0.833191 + . ID=CGI_10019476; scaffold617 WUBlastX DNA_Academ 121899 122126 482 + . . scaffold617 GLEAN mRNA 121899 122204 0.866433 + . ID=CGI_10012724; scaffold547 WUBlastX LTR_Ngaro 429623 429841 26 + . . scaffold547 GLEAN mRNA 419498 445830 0.497938 - . ID=CGI_10018857; scaffold626 WUBlastX RC_Helitron 38527 38808 77 - . . scaffold626 GLEAN mRNA 35526 64232 0.361303 - . ID=CGI_10019977; scaffold1834 WUBlastX DNA_MuDR 190784 191104 45 + . . scaffold1834 GLEAN mRNA 187623 216470 0.374762 + . ID=CGI_10016658; scaffold1673 WUBlastX LINE_RTE-BovB 337559 337693 51 - . . scaffold1673 GLEAN mRNA 332227 347638 0.811348 + . ID=CGI_10013581; scaffold421 WUBlastX LINE_RTE-X 247413 247571 81 - . . scaffold421 GLEAN mRNA 232502 254015 0.999281 - . ID=CGI_10012158; scaffold925 WUBlastX LINE_RTE-X 380224 380361 86 + . . scaffold925 GLEAN mRNA 368361 388516 0.521242 + . ID=CGI_10017426; scaffold1682 WUBlastX LINE_RTE-X 206966 207193 25 + . . scaffold1682 GLEAN mRNA 191866 233299 0.316426 - . ID=CGI_10016049; scaffold1623 WUBlastX LINE_RTE-BovB 9098 9133 20 - . . scaffold1623 GLEAN mRNA 2672 21645 0.211469 + . ID=CGI_10002853; scaffold1623 WUBlastX LINE_RTE-BovB 9382 9417 20 - . . scaffold1623 GLEAN mRNA 2672 21645 0.211469 + . ID=CGI_10002853; scaffold1743 WUBlastX LINE_RTE-X 233893 234198 23 - . . scaffold1743 GLEAN mRNA 225368 248286 0.742801 - . ID=CGI_10011658; C32318 WUBlastX LINE_L2 7512 7823 71 - . . C32318 GLEAN mRNA 2480 10983 0.999998 + . ID=CGI_10000883; scaffold1154 WUBlastX LTR_DIRS 366788 367216 26 + . . scaffold1154 GLEAN mRNA 360464 375818 0.544657 - . ID=CGI_10026164; scaffold1154 WUBlastX LTR_DIRS 366788 367216 26 + . . scaffold1154 GLEAN mRNA 365982 369978 0.558383 + . ID=CGI_10026165; scaffold42022 WUBlastX DNA_IS4EU 45207 45335 29 - . . scaffold42022 GLEAN mRNA 12310 51169 0.982585 - . ID=CGI_10006049; scaffold365 WUBlastX RC_Helitron 271999 272205 88 + . . scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; scaffold705 WUBlastX LTR_Gypsy 318745 318785 101 - . . scaffold705 GLEAN mRNA 315628 318785 0.810949 - . ID=CGI_10015515; scaffold541 WUBlastX LINE_L1 106191 106679 49 + . . scaffold541 GLEAN mRNA 106056 107192 0.777728 + . ID=CGI_10022378; scaffold1670 WUBlastX LINE_RTE-X 406850 407188 80 + . . scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; scaffold43182 WUBlastX DNA_Sola 38000 38275 20 - . . scaffold43182 GLEAN mRNA 25821 44165 0.795977 + . ID=CGI_10009197; scaffold1599 WUBlastX DNA_Sola 208848 208913 21 + . . scaffold1599 GLEAN mRNA 204689 219809 0.999676 - . ID=CGI_10027141; scaffold393 WUBlastX DNA_TcMar-Tc1 349284 349622 53 + . . scaffold393 GLEAN mRNA 346842 359147 0.976322 + . ID=CGI_10026879; scaffold393 WUBlastX DNA_TcMar-Tc1 351162 351500 53 + . . scaffold393 GLEAN mRNA 346842 359147 0.976322 + . ID=CGI_10026879; scaffold1016 WUBlastX LTR_Gypsy 311033 311100 65 + . . scaffold1016 GLEAN mRNA 310747 311100 0.968712 + . ID=CGI_10016895; scaffold315 WUBlastX DNA_Kolobok 40660 40935 101 + . . scaffold315 GLEAN mRNA 38585 42231 0.984467 + . ID=CGI_10020399; scaffold38466 WUBlastX DNA_Kolobok-Hyd 3620 3688 23 + . . scaffold38466 GLEAN mRNA 3170 4605 0.999675 + . ID=CGI_10002797; scaffold695 WUBlastX LINE_L1 90259 90453 26 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold1671 WUBlastX DNA_Sola 387394 387810 30 - . . scaffold1671 GLEAN mRNA 384061 387810 0.999617 - . ID=CGI_10015157; scaffold313 WUBlastX LINE_RTE-X 134319 134446 95 + . . scaffold313 GLEAN mRNA 134319 135998 0.83601 - . ID=CGI_10026584; scaffold1179 WUBlastX LINE_L1-Tx1 939636 939992 80 + . . scaffold1179 GLEAN mRNA 936280 947260 0.224969 + . ID=CGI_10027393; scaffold488 WUBlastX LINE_L2 45161 45541 89 - . . scaffold488 GLEAN mRNA 23091 53480 0.998314 - . ID=CGI_10005407; scaffold885 WUBlastX LTR_DIRS 1017481 1017660 62 + . . scaffold885 GLEAN mRNA 1005329 1048267 0.991835 - . ID=CGI_10025234; scaffold57 WUBlastX DNA_En-Spm 4389 5024 58 + . . scaffold57 GLEAN mRNA 3208 18413 0.810616 + . ID=CGI_10020530; scaffold453 WUBlastX LTR_Gypsy 142785 142883 34 + . . scaffold453 GLEAN mRNA 138101 157244 0.160604 + . ID=CGI_10015041; scaffold1749 WUBlastX LINE_RTE-X 174445 174771 52 - . . scaffold1749 GLEAN mRNA 168130 177487 0.428785 + . ID=CGI_10008260; scaffold63 WUBlastX LINE_L1 234564 234899 28 - . . scaffold63 GLEAN mRNA 226088 238680 0.843686 + . ID=CGI_10017275; scaffold522 WUBlastX LINE_RTE-X 223948 224364 34 + . . scaffold522 GLEAN mRNA 220239 233086 0.999661 + . ID=CGI_10020320; scaffold38984 WUBlastX LINE_RTE-BovB 15666 16040 95 + . . scaffold38984 GLEAN mRNA 8531 16087 0.937171 - . ID=CGI_10003105; scaffold1209 WUBlastX LINE_RTE-X 20229 20642 45 - . . scaffold1209 GLEAN mRNA 16133 36287 0.961312 - . ID=CGI_10007964; scaffold593 WUBlastX LINE_RTE-BovB 482720 482818 20 - . . scaffold593 GLEAN mRNA 482551 496845 0.997605 + . ID=CGI_10022532; scaffold593 WUBlastX LINE_RTE-BovB 483465 483647 93 - . . scaffold593 GLEAN mRNA 482551 496845 0.997605 + . ID=CGI_10022532; scaffold1556 WUBlastX LINE_RTE-X 101369 101746 53 - . . scaffold1556 GLEAN mRNA 98989 101989 0.999916 - . ID=CGI_10010473; scaffold1322 WUBlastX LTR_Ngaro 587512 587613 41 - . . scaffold1322 GLEAN mRNA 571511 590238 0.999351 - . ID=CGI_10019486; scaffold40068 WUBlastX DNA_TcMar-Tc1 49583 49744 29 - . . scaffold40068 GLEAN mRNA 33497 57280 0.493966 - . ID=CGI_10003835; scaffold40068 WUBlastX DNA_TcMar-Tc1 49753 49908 85 - . . scaffold40068 GLEAN mRNA 33497 57280 0.493966 - . ID=CGI_10003835; scaffold621 WUBlastX LTR_Ngaro 306271 306684 70 + . . scaffold621 GLEAN mRNA 265576 316930 0.261056 - . ID=CGI_10017677; scaffold86 WUBlastX LINE_L1 217098 217394 35 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold142 WUBlastX DNA_MuDR 1243595 1243867 103 + . . scaffold142 GLEAN mRNA 1238618 1243867 0.889602 + . ID=CGI_10026798; scaffold142 WUBlastX DNA_MuDR 1243870 1243918 103 + . . scaffold142 GLEAN mRNA 1243870 1244404 0.974028 + . ID=CGI_10026799; scaffold1227 WUBlastX DNA_Kolobok-Hyd 210250 210369 40 + . . scaffold1227 GLEAN mRNA 209453 211287 0.982351 + . ID=CGI_10010056; scaffold72 WUBlastX DNA_TcMar-Marin 209326 209430 21 + . . scaffold72 GLEAN mRNA 207105 213716 0.998726 - . ID=CGI_10017841; scaffold1376 WUBlastX LINE_CR1-L2 15557 15760 32 + . . scaffold1376 GLEAN mRNA 13081 17616 0.523289 - . ID=CGI_10002794; scaffold1159 WUBlastX LINE_L2 161555 161920 54 + . . scaffold1159 GLEAN mRNA 140710 162801 0.966335 + . ID=CGI_10007977; scaffold759 WUBlastX LTR_Gypsy-Cigr 101799 102596 62 + . . scaffold759 GLEAN mRNA 101001 103047 0.957564 + . ID=CGI_10010775; scaffold43076 WUBlastX DNA_IS4EU 66512 66685 23 + . . scaffold43076 GLEAN mRNA 66506 68912 0.997439 + . ID=CGI_10008761; scaffold1741 WUBlastX DNA_IS4EU 815715 815915 91 - . . scaffold1741 GLEAN mRNA 804296 818884 1 - . ID=CGI_10024052; scaffold534 WUBlastX LTR_Gypsy 67906 68277 68 - . . scaffold534 GLEAN mRNA 66095 75550 0.716363 + . ID=CGI_10005164; scaffold339 WUBlastX LINE_RTE-X 155957 156292 48 - . . scaffold339 GLEAN mRNA 146286 166002 0.999828 + . ID=CGI_10008803; scaffold102 WUBlastX LINE_RTE-X 971349 971549 27 - . . scaffold102 GLEAN mRNA 961541 993549 0.838657 - . ID=CGI_10028460; scaffold419 WUBlastX LINE_RTE-X 47281 47496 26 - . . scaffold419 GLEAN mRNA 46988 49900 0.999992 + . ID=CGI_10028319; scaffold12 WUBlastX LTR_Gypsy 308751 308921 20 - . . scaffold12 GLEAN mRNA 290334 319375 0.793549 - . ID=CGI_10018039; scaffold12 WUBlastX LTR_Gypsy 309316 309420 33 - . . scaffold12 GLEAN mRNA 290334 319375 0.793549 - . ID=CGI_10018039; scaffold404 WUBlastX LTR_DIRS 320633 320692 26 + . . scaffold404 GLEAN mRNA 311425 335048 0.297334 - . ID=CGI_10013607; scaffold1172 WUBlastX DNA_Kolobok 135333 135521 45 + . . scaffold1172 GLEAN mRNA 130831 145007 0.99998 + . ID=CGI_10006909; scaffold1173 WUBlastX LINE_Penelope 100093 100200 56 + . . scaffold1173 GLEAN mRNA 87229 104633 0.605033 - . ID=CGI_10005747; scaffold43054 WUBlastX LINE_RTE-X 70949 71257 89 - . . scaffold43054 GLEAN mRNA 69561 76829 0.990615 + . ID=CGI_10008597; scaffold783 WUBlastX LINE_RTE-X 7169 7468 112 - . . scaffold783 GLEAN mRNA 2790 33865 0.358594 + . ID=CGI_10011675; scaffold976 WUBlastX LINE_L2 372932 373099 21 + . . scaffold976 GLEAN mRNA 356629 381531 0.51151 + . ID=CGI_10014020; scaffold33082 WUBlastX LINE_CR1-L2 7483 7776 65 - . . scaffold33082 GLEAN mRNA 1046 12947 0.584166 + . ID=CGI_10000988; scaffold145 WUBlastX DNA_Crypton 642490 642894 88 - . . scaffold145 GLEAN mRNA 640130 678599 0.569648 - . ID=CGI_10026560; scaffold825 WUBlastX LTR_Ngaro 242978 243289 88 + . . scaffold825 GLEAN mRNA 241324 246750 1 - . ID=CGI_10012714; scaffold206 WUBlastX DNA_En-Spm 128213 128449 78 - . . scaffold206 GLEAN mRNA 123903 131741 0.999975 - . ID=CGI_10011374; scaffold591 WUBlastX LINE_L1 516313 516534 40 + . . scaffold591 GLEAN mRNA 499941 525575 0.696977 - . ID=CGI_10027572; scaffold591 WUBlastX LINE_L1 516531 516875 75 + . . scaffold591 GLEAN mRNA 499941 525575 0.696977 - . ID=CGI_10027572; scaffold198 WUBlastX DNA_TcMar-Tc1 132509 132937 53 - . . scaffold198 GLEAN mRNA 125037 150103 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_TcMar-Tc1 132509 132937 53 - . . scaffold198 GLEAN mRNA 129155 148314 0.927276 - . ID=CGI_10027796; scaffold1382 WUBlastX LTR_DIRS 232615 232818 120 - . . scaffold1382 GLEAN mRNA 229926 239669 0.88642 - . ID=CGI_10011181; scaffold164 WUBlastX LTR_Gypsy 53501 53704 113 - . . scaffold164 GLEAN mRNA 40628 54980 0.99473 - . ID=CGI_10021845; scaffold1753 WUBlastX RC_Helitron 43904 44905 70 + . . scaffold1753 GLEAN mRNA 42409 50828 0.996749 + . ID=CGI_10010802; scaffold41568 WUBlastX LINE_RTE-X 78120 78305 76 - . . scaffold41568 GLEAN mRNA 75182 91109 0.978007 + . ID=CGI_10005300; scaffold358 WUBlastX LINE_RTE-X 137534 137722 24 + . . scaffold358 GLEAN mRNA 127311 138997 0.861912 - . ID=CGI_10013024; scaffold40038 WUBlastX LTR_ERVK 6139 6237 47 - . . scaffold40038 GLEAN mRNA 5272 10964 1 - . ID=CGI_10003771; scaffold40038 WUBlastX LTR_ERVK 6718 6843 72 - . . scaffold40038 GLEAN mRNA 5272 10964 1 - . ID=CGI_10003771; scaffold193 WUBlastX LINE_L1-Tx1 228148 228513 89 + . . scaffold193 GLEAN mRNA 225142 231463 0.959713 + . ID=CGI_10015231; scaffold1849 WUBlastX LINE_CR1 84294 85283 99 - . . scaffold1849 GLEAN mRNA 72001 111634 0.818968 - . ID=CGI_10015914; scaffold117 WUBlastX LINE_CR1 53122 53256 49 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold38058 WUBlastX LTR_Gypsy-Cigr 5226 5531 118 - . . scaffold38058 GLEAN mRNA 3486 8173 0.999159 - . ID=CGI_10002595; scaffold619 WUBlastX LTR_Ngaro 484356 484790 84 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold40832 WUBlastX LINE_I 79602 79667 23 - . . scaffold40832 GLEAN mRNA 51373 82869 0.350561 + . ID=CGI_10004457; scaffold1066 WUBlastX LTR_Gypsy 169951 170910 150 + . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold175 WUBlastX LINE_Penelope 160311 161189 79 + . . scaffold175 GLEAN mRNA 158189 167433 0.999624 + . ID=CGI_10021311; scaffold337 WUBlastX LINE_RTE-BovB 570423 570971 102 + . . scaffold337 GLEAN mRNA 562237 577539 1 - . ID=CGI_10028070; scaffold1094 WUBlastX LINE_RTE-X 230810 231313 83 + . . scaffold1094 GLEAN mRNA 207588 241472 0.989752 + . ID=CGI_10021816; scaffold1301 WUBlastX LINE_RTE-X 955501 956004 83 + . . scaffold1301 GLEAN mRNA 940827 961246 0.536299 + . ID=CGI_10027751; scaffold594 WUBlastX LINE_RTE-X 416070 416168 78 - . . scaffold594 GLEAN mRNA 414845 416168 0.999391 - . ID=CGI_10016391; scaffold150 WUBlastX LINE_CR1-L2 1610589 1610957 87 + . . scaffold150 GLEAN mRNA 1609311 1613969 0.550073 + . ID=CGI_10028691; scaffold41666 WUBlastX DNA_Harbinger 115247 115750 145 + . . scaffold41666 GLEAN mRNA 111874 117299 0.700617 - . ID=CGI_10005377; scaffold619 WUBlastX DNA_MuDR 875302 875658 153 - . . scaffold619 GLEAN mRNA 870805 880758 0.920529 - . ID=CGI_10025790; scaffold1570 WUBlastX DNA_P 16312 17103 118 + . . scaffold1570 GLEAN mRNA 10930 17344 0.990546 + . ID=CGI_10002599; scaffold1532 WUBlastX DNA_PiggyBac 608523 608678 56 - . . scaffold1532 GLEAN mRNA 606606 610636 0.502786 - . ID=CGI_10028261; scaffold1503 WUBlastX DNA_TcMar-Tc1 57006 57347 148 - . . scaffold1503 GLEAN mRNA 55967 67698 1 + . ID=CGI_10009528; scaffold784 WUBlastX LINE_RTE-BovB 303934 304200 63 + . . scaffold784 GLEAN mRNA 298825 308897 0.999951 - . ID=CGI_10024422; scaffold976 WUBlastX LTR_Pao 46735 47061 42 - . . scaffold976 GLEAN mRNA 40652 60127 0.884558 - . ID=CGI_10014002; scaffold313 WUBlastX DNA_En-Spm 615204 615356 67 - . . scaffold313 GLEAN mRNA 612366 622273 0.647784 - . ID=CGI_10026614; scaffold335 WUBlastX LTR_DIRS 52257 52562 154 - . . scaffold335 GLEAN mRNA 36330 53474 0.791399 - . ID=CGI_10017083; scaffold1174 WUBlastX DNA_hAT-Blackja 1075123 1075275 22 - . . scaffold1174 GLEAN mRNA 1072564 1077795 0.506907 + . ID=CGI_10026080; scaffold38458 WUBlastX DNA_Harbinger 53837 53986 64 + . . scaffold38458 GLEAN mRNA 38002 56000 0.84332 + . ID=CGI_10002784; scaffold286 WUBlastX DNA_Kolobok 207676 208011 173 + . . scaffold286 GLEAN mRNA 207114 209601 0.577193 + . ID=CGI_10015965; scaffold1821 WUBlastX LINE_RTE-X 171553 171906 107 + . . scaffold1821 GLEAN mRNA 167929 177659 0.681651 - . ID=CGI_10011291; scaffold36462 WUBlastX LINE_RTE-X 20713 20754 23 - . . scaffold36462 GLEAN mRNA 15214 26775 0.999351 - . ID=CGI_10001929; scaffold40584 WUBlastX LINE_L1-Tx1 58457 59029 129 + . . scaffold40584 GLEAN mRNA 39320 59449 0.702301 + . ID=CGI_10004249; scaffold39096 WUBlastX LTR_Gypsy 24261 26228 1116 + . . scaffold39096 GLEAN mRNA 2759 26289 0.999949 + . ID=CGI_10003146; scaffold756 WUBlastX LTR_Gypsy 353009 353437 277 - . . scaffold756 GLEAN mRNA 341736 353437 0.789635 - . ID=CGI_10016464; scaffold1054 WUBlastX LINE_L2 315745 315957 125 + . . scaffold1054 GLEAN mRNA 312606 322566 0.968602 + . ID=CGI_10012967; scaffold41452 WUBlastX LINE_L2 62547 63113 69 + . . scaffold41452 GLEAN mRNA 56340 65838 0.524499 + . ID=CGI_10005081; scaffold337 WUBlastX LINE_L1-Tx1 1078581 1078859 148 + . . scaffold337 GLEAN mRNA 1058886 1083021 0.758954 + . ID=CGI_10028091; scaffold1249 WUBlastX LINE_RTE-X 128541 129923 911 + . . scaffold1249 GLEAN mRNA 124551 131714 0.558382 + . ID=CGI_10019051; scaffold1249 WUBlastX LINE_RTE-X 129898 130281 182 + . . scaffold1249 GLEAN mRNA 124551 131714 0.558382 + . ID=CGI_10019051; scaffold458 WUBlastX LTR_Ngaro 171737 172504 107 + . . scaffold458 GLEAN mRNA 171659 179488 0.10231 + . ID=CGI_10013591; scaffold579 WUBlastX LTR_Pao 215621 215674 43 + . . scaffold579 GLEAN mRNA 193436 221323 0.863149 + . ID=CGI_10011264; scaffold351 WUBlastX DNA_Maverick 298997 299506 124 + . . scaffold351 GLEAN mRNA 298327 302475 0.747441 - . ID=CGI_10022603; scaffold1448 WUBlastX LINE_RTE-X 3545 3646 27 - . . scaffold1448 GLEAN mRNA 631 18510 0.999948 + . ID=CGI_10011852; scaffold854 WUBlastX LINE_RTE-X 450297 450836 92 - . . scaffold854 GLEAN mRNA 397662 453116 0.849104 + . ID=CGI_10022252; scaffold1067 WUBlastX LINE_L1-Tx1 108034 108411 76 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold1127 WUBlastX LINE_L1-Tx1 18105 18785 323 - . . scaffold1127 GLEAN mRNA 44 22807 0.494799 - . ID=CGI_10010645; scaffold1127 WUBlastX LINE_L1-Tx1 18788 19771 639 - . . scaffold1127 GLEAN mRNA 44 22807 0.494799 - . ID=CGI_10010645; scaffold1127 WUBlastX LINE_L1-Tx1 19807 20025 78 - . . scaffold1127 GLEAN mRNA 44 22807 0.494799 - . ID=CGI_10010645; scaffold43388 WUBlastX DNA_Kolobok-IS4 217416 218144 131 + . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold274 WUBlastX LTR_Gypsy 120481 120570 44 - . . scaffold274 GLEAN mRNA 114872 127603 0.900499 - . ID=CGI_10017014; scaffold274 WUBlastX LTR_Gypsy 120481 120570 44 - . . scaffold274 GLEAN mRNA 110645 138083 0.999675 + . ID=CGI_10017013; scaffold38736 WUBlastX DNA_Harbinger 50224 50367 65 + . . scaffold38736 GLEAN mRNA 50218 50844 1 + . ID=CGI_10002944; scaffold38736 WUBlastX DNA_Harbinger 50560 50829 81 + . . scaffold38736 GLEAN mRNA 50218 50844 1 + . ID=CGI_10002944; scaffold828 WUBlastX LINE_L1 54463 54657 116 + . . scaffold828 GLEAN mRNA 15085 78014 0.596994 - . ID=CGI_10007364; scaffold38532 WUBlastX LTR_Ngaro 55506 56339 165 - . . scaffold38532 GLEAN mRNA 48785 56819 0.999998 - . ID=CGI_10002832; scaffold1459 WUBlastX LINE_L1-Tx1 10504 10599 31 + . . scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; scaffold39470 WUBlastX LINE_DRE 47414 47485 23 + . . scaffold39470 GLEAN mRNA 37603 51823 0.681651 + . ID=CGI_10003380; scaffold412 WUBlastX LINE_L1-Tx1 147285 147680 120 + . . scaffold412 GLEAN mRNA 141227 160730 0.499998 - . ID=CGI_10018560; scaffold43538 WUBlastX LINE_CR1 155110 155847 166 + . . scaffold43538 GLEAN mRNA 151937 158307 1 - . ID=CGI_10010823; scaffold1884 WUBlastX LINE_RTE-BovB 142658 143488 643 - . . scaffold1884 GLEAN mRNA 133392 150395 0.998261 + . ID=CGI_10012014; scaffold398 WUBlastX LINE_Jockey 3466 4479 128 - . . scaffold398 GLEAN mRNA 896 15325 0.911211 + . ID=CGI_10004360; scaffold1831 WUBlastX LINE_RTE-BovB 1806 1916 32 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1097 WUBlastX LINE_RTE-BovB 683153 683311 88 - . . scaffold1097 GLEAN mRNA 671182 687187 0.811238 + . ID=CGI_10024541; scaffold1518 WUBlastX LINE_L2 285447 285980 85 + . . scaffold1518 GLEAN mRNA 258241 287104 0.241996 + . ID=CGI_10017803; scaffold160 WUBlastX DNA_Crypton 500122 500159 53 + . . scaffold160 GLEAN mRNA 498862 500159 0.994424 + . ID=CGI_10020604; scaffold42890 WUBlastX LINE_L1-Tx1 196577 197038 171 + . . scaffold42890 GLEAN mRNA 182304 199068 0.438528 - . ID=CGI_10008045; scaffold42890 WUBlastX LINE_L1-Tx1 197032 197091 61 + . . scaffold42890 GLEAN mRNA 182304 199068 0.438528 - . ID=CGI_10008045; scaffold42096 WUBlastX LINE_RTE-X 105186 105578 199 + . . scaffold42096 GLEAN mRNA 96755 112781 0.947295 - . ID=CGI_10006165; scaffold41356 WUBlastX LTR_Ngaro 12694 13281 110 - . . scaffold41356 GLEAN mRNA 5844 20035 0.990026 - . ID=CGI_10004993; scaffold241 WUBlastX LINE_L1-Tx1 125084 125791 59 - . . scaffold241 GLEAN mRNA 108603 137659 0.55536 + . ID=CGI_10025092; scaffold36642 WUBlastX LINE_L1-Tx1 2482 2808 68 - . . scaffold36642 GLEAN mRNA 976 27657 0.999986 + . ID=CGI_10002025; scaffold42516 WUBlastX DNA_hAT 71914 72471 236 - . . scaffold42516 GLEAN mRNA 66087 74671 0.495617 - . ID=CGI_10007107; scaffold39358 WUBlastX DNA_IS4EU 37602 37955 35 + . . scaffold39358 GLEAN mRNA 36445 38443 0.716437 + . ID=CGI_10003326; C34110 WUBlastX DNA_IS4EU 12772 13209 174 + . . C34110 GLEAN mRNA 2583 15463 0.431065 - . ID=CGI_10001212; scaffold1750 WUBlastX LINE_RTE-X 17716 17748 24 + . . scaffold1750 GLEAN mRNA 8946 22537 0.686268 + . ID=CGI_10021461; scaffold987 WUBlastX LINE_CR1-L2 81285 81989 199 + . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold1062 WUBlastX DNA_Crypton 107220 108275 172 + . . scaffold1062 GLEAN mRNA 100465 126410 0.975343 - . ID=CGI_10005742; C29186 WUBlastX LINE_RTE-X 383 1144 216 - . . C29186 GLEAN mRNA 314 4810 0.999064 - . ID=CGI_10000500; C34726 WUBlastX DNA_Maverick 9983 10384 229 + . . C34726 GLEAN mRNA 9188 12912 0.93708 - . ID=CGI_10001353; scaffold198 WUBlastX LTR_Gypsy 800115 802553 1238 + . . scaffold198 GLEAN mRNA 771982 806817 0.999999 + . ID=CGI_10027821; C30058 WUBlastX LINE_L2 1609 2175 192 + . . C30058 GLEAN mRNA 650 4812 0.700712 - . ID=CGI_10000592; scaffold1885 WUBlastX LINE_CR1-L2 360174 360518 169 - . . scaffold1885 GLEAN mRNA 350853 371060 0.999501 + . ID=CGI_10013905; C23734 WUBlastX LTR_Gypsy 512 712 217 - . . C23734 GLEAN mRNA 512 712 1 - . ID=CGI_10000149; scaffold140 WUBlastX LINE_L1-Tx1 365340 366320 151 - . . scaffold140 GLEAN mRNA 344940 369951 0.671174 - . ID=CGI_10020136; scaffold925 WUBlastX LINE_RTE-X 198891 199361 168 + . . scaffold925 GLEAN mRNA 185655 201680 0.878781 - . ID=CGI_10017418; C31322 WUBlastX LINE_RTE-X 7291 8349 161 - . . C31322 GLEAN mRNA 2728 8628 1 - . ID=CGI_10000731; scaffold1488 WUBlastX LINE_RTE-X 99183 99683 217 - . . scaffold1488 GLEAN mRNA 90513 121461 0.719592 + . ID=CGI_10005179; scaffold1705 WUBlastX LTR_Gypsy-Cigr 91115 92638 822 - . . scaffold1705 GLEAN mRNA 68885 100114 0.343232 + . ID=CGI_10007468; scaffold541 WUBlastX LINE_CR1 468134 468199 22 + . . scaffold541 GLEAN mRNA 466590 480582 0.782383 + . ID=CGI_10022394; scaffold1715 WUBlastX LINE_CR1-L2 567670 567921 27 + . . scaffold1715 GLEAN mRNA 550177 572188 0.407691 + . ID=CGI_10019686; scaffold38272 WUBlastX LINE_L1-Tx1 39118 39321 24 + . . scaffold38272 GLEAN mRNA 12040 52169 0.605388 + . ID=CGI_10002702; scaffold305 WUBlastX LTR_Gypsy 129091 129255 28 - . . scaffold305 GLEAN mRNA 114232 133246 0.986225 - . ID=CGI_10019117; scaffold43150 WUBlastX LINE_L1-Tx1 133382 137185 1935 + . . scaffold43150 GLEAN mRNA 121679 138901 1 + . ID=CGI_10009035; scaffold1255 WUBlastX DNA_hAT 377258 378478 257 - . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold1255 WUBlastX DNA_hAT 379013 379195 57 - . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold854 WUBlastX LTR_Pao 703861 704424 173 + . . scaffold854 GLEAN mRNA 698978 729843 0.21294 + . ID=CGI_10022264; scaffold40794 WUBlastX DNA_Kolobok-IS4 24031 24411 109 - . . scaffold40794 GLEAN mRNA 13820 26649 0.999201 - . ID=CGI_10004495; scaffold41852 WUBlastX DNA_Harbinger 109091 109294 98 - . . scaffold41852 GLEAN mRNA 107517 110100 0.999855 + . ID=CGI_10005735; scaffold41852 WUBlastX DNA_Harbinger 109290 109565 179 - . . scaffold41852 GLEAN mRNA 107517 110100 0.999855 + . ID=CGI_10005735; scaffold544 WUBlastX LTR_DIRS 564240 564437 71 + . . scaffold544 GLEAN mRNA 559869 574687 0.998045 - . ID=CGI_10022574; scaffold780 WUBlastX LTR_Ngaro 968068 968217 95 - . . scaffold780 GLEAN mRNA 959842 972028 0.999936 - . ID=CGI_10024749; scaffold40346 WUBlastX DNA_TcMar-Tc1 23940 24869 258 - . . scaffold40346 GLEAN mRNA 23217 29434 0.99961 - . ID=CGI_10004041; scaffold1054 WUBlastX DNA_Kolobok 332260 332496 79 + . . scaffold1054 GLEAN mRNA 331138 333504 0.999415 + . ID=CGI_10012969; scaffold1214 WUBlastX LINE_RTE-X 243849 244232 56 + . . scaffold1214 GLEAN mRNA 241265 253884 0.274712 + . ID=CGI_10015480; scaffold243 WUBlastX DNA_hAT-Tip100 43902 44114 42 + . . scaffold243 GLEAN mRNA 30219 44504 0.996041 + . ID=CGI_10006813; scaffold215 WUBlastX LINE_RTE-BovB 155968 156450 178 - . . scaffold215 GLEAN mRNA 149757 156902 0.354656 - . ID=CGI_10006647; scaffold39212 WUBlastX DNA_Sola 46459 47070 91 - . . scaffold39212 GLEAN mRNA 30679 56961 0.415387 - . ID=CGI_10003233; scaffold1750 WUBlastX LTR_Gypsy-Troyk 688402 688629 297 - . . scaffold1750 GLEAN mRNA 688402 691316 0.700377 - . ID=CGI_10021502; scaffold1528 WUBlastX LINE_L1 286587 286661 21 + . . scaffold1528 GLEAN mRNA 279511 286973 0.999103 + . ID=CGI_10013228; scaffold1880 WUBlastX LINE_L2 51497 51853 52 + . . scaffold1880 GLEAN mRNA 5602 92195 0.383639 - . ID=CGI_10008204; scaffold794 WUBlastX DNA_TcMar-Fot1 393780 394775 340 - . . scaffold794 GLEAN mRNA 378971 426999 0.796099 - . ID=CGI_10017158; scaffold40264 WUBlastX LINE_Proto2 51777 52571 29 - . . scaffold40264 GLEAN mRNA 10435 67637 0.512371 + . ID=CGI_10004012; scaffold870 WUBlastX DNA_hAT 47739 47879 61 + . . scaffold870 GLEAN mRNA 44819 52818 0.999949 + . ID=CGI_10007493; scaffold1024 WUBlastX LTR_Gypsy 990126 990341 55 + . . scaffold1024 GLEAN mRNA 986108 994171 0.999235 - . ID=CGI_10028555; scaffold192 WUBlastX DNA_Sola 24567 24782 52 - . . scaffold192 GLEAN mRNA 23550 26296 0.999536 - . ID=CGI_10023697; scaffold213 WUBlastX DNA_hAT-Tip100 169221 169460 152 + . . scaffold213 GLEAN mRNA 155081 183799 0.877289 - . ID=CGI_10007552; scaffold213 WUBlastX DNA_hAT-Tip100 169465 169827 162 + . . scaffold213 GLEAN mRNA 155081 183799 0.877289 - . ID=CGI_10007552; scaffold213 WUBlastX DNA_hAT-Tip100 169866 170030 87 + . . scaffold213 GLEAN mRNA 155081 183799 0.877289 - . ID=CGI_10007552; scaffold550 WUBlastX DNA_Harbinger 57209 57670 70 - . . scaffold550 GLEAN mRNA 42295 70110 0.723644 + . ID=CGI_10012483; scaffold1272 WUBlastX DNA_Harbinger 161385 162092 373 - . . scaffold1272 GLEAN mRNA 155957 203314 0.324986 - . ID=CGI_10008310; scaffold695 WUBlastX LINE_L1-Tx1 89935 90057 55 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold1574 WUBlastX LINE_RTE-X 455676 457628 168 - . . scaffold1574 GLEAN mRNA 452128 459537 0.999957 + . ID=CGI_10016335; scaffold1347 WUBlastX DNA_IS4EU 23753 24178 166 + . . scaffold1347 GLEAN mRNA 21277 29429 0.935835 - . ID=CGI_10012972; scaffold1347 WUBlastX DNA_IS4EU 24824 25177 32 + . . scaffold1347 GLEAN mRNA 21277 29429 0.935835 - . ID=CGI_10012972; scaffold1347 WUBlastX DNA_IS4EU 25949 26350 183 + . . scaffold1347 GLEAN mRNA 21277 29429 0.935835 - . ID=CGI_10012972; scaffold1603 WUBlastX LTR_Pao 333158 333376 103 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold619 WUBlastX DNA_hAT-hATw 951909 953348 213 + . . scaffold619 GLEAN mRNA 949722 959476 0.544338 - . ID=CGI_10025794; scaffold1097 WUBlastX LINE_RTE-BovB 682490 682747 61 - . . scaffold1097 GLEAN mRNA 671182 687187 0.811238 + . ID=CGI_10024541; scaffold43686 WUBlastX LTR_Gypsy 188392 188532 54 - . . scaffold43686 GLEAN mRNA 172665 193661 0.978405 - . ID=CGI_10011758; scaffold1179 WUBlastX LTR_Gypsy-Cigr 22195 22767 318 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold191 WUBlastX DNA_Kolobok 205828 206040 69 - . . scaffold191 GLEAN mRNA 205783 209379 0.997333 - . ID=CGI_10022416; scaffold292 WUBlastX DNA_TcMar-Tc1 53781 54752 386 + . . scaffold292 GLEAN mRNA 51568 72452 0.660019 + . ID=CGI_10003529; scaffold578 WUBlastX DNA_Kolobok 23698 23937 73 - . . scaffold578 GLEAN mRNA 19761 26602 0.244564 - . ID=CGI_10015109; scaffold1097 WUBlastX LTR_Gypsy 863298 863597 20 + . . scaffold1097 GLEAN mRNA 848149 863853 0.999116 + . ID=CGI_10024555; scaffold794 WUBlastX LTR_Gypsy 281021 281218 168 + . . scaffold794 GLEAN mRNA 271227 282643 0.491343 - . ID=CGI_10017153; scaffold794 WUBlastX LTR_Gypsy 281601 282110 280 + . . scaffold794 GLEAN mRNA 271227 282643 0.491343 - . ID=CGI_10017153; scaffold160 WUBlastX LINE_L1-Tx1 529164 530129 405 + . . scaffold160 GLEAN mRNA 523738 543493 0.85871 - . ID=CGI_10020606; scaffold772 WUBlastX LTR_Ngaro 339386 339712 193 + . . scaffold772 GLEAN mRNA 336765 344045 0.544674 + . ID=CGI_10016594; scaffold219 WUBlastX LINE_L1-Tx1 129338 130081 95 + . . scaffold219 GLEAN mRNA 124764 139591 0.613723 - . ID=CGI_10016614; scaffold219 WUBlastX LINE_L1-Tx1 132111 132458 72 + . . scaffold219 GLEAN mRNA 124764 139591 0.613723 - . ID=CGI_10016614; scaffold712 WUBlastX LINE_L1 153728 154975 289 - . . scaffold712 GLEAN mRNA 144650 156180 1 + . ID=CGI_10016478; scaffold581 WUBlastX LINE_L1-Tx1 19760 19876 26 + . . scaffold581 GLEAN mRNA 8702 32094 0.999834 - . ID=CGI_10013733; scaffold469 WUBlastX LINE_RTE-X 936864 937904 452 - . . scaffold469 GLEAN mRNA 925100 941633 0.564574 + . ID=CGI_10024703; scaffold1101 WUBlastX LINE_RTE-X 149152 149430 165 - . . scaffold1101 GLEAN mRNA 141921 154245 0.479315 + . ID=CGI_10023014; scaffold43076 WUBlastX LTR_Gypsy-Cigr 195503 195568 25 - . . scaffold43076 GLEAN mRNA 186716 211039 0.795025 + . ID=CGI_10008770; scaffold43076 WUBlastX LTR_Gypsy-Cigr 195955 196809 453 - . . scaffold43076 GLEAN mRNA 186716 211039 0.795025 + . ID=CGI_10008770; scaffold42 WUBlastX LTR_Ngaro 78976 79422 200 - . . scaffold42 GLEAN mRNA 77522 83143 0.592597 - . ID=CGI_10018905; scaffold1750 WUBlastX LTR_Gypsy 688402 689337 406 - . . scaffold1750 GLEAN mRNA 688402 691316 0.700377 - . ID=CGI_10021502; scaffold19 WUBlastX LTR_DIRS 197615 198004 54 + . . scaffold19 GLEAN mRNA 192266 206861 0.651568 + . ID=CGI_10010840; scaffold19 WUBlastX LTR_DIRS 198398 198976 218 + . . scaffold19 GLEAN mRNA 192266 206861 0.651568 + . ID=CGI_10010840; scaffold19 WUBlastX LTR_DIRS 199349 199603 51 + . . scaffold19 GLEAN mRNA 192266 206861 0.651568 + . ID=CGI_10010840; scaffold19 WUBlastX LTR_DIRS 199606 200037 129 + . . scaffold19 GLEAN mRNA 192266 206861 0.651568 + . ID=CGI_10010840; scaffold853 WUBlastX LTR_Gypsy 453984 454421 47 - . . scaffold853 GLEAN mRNA 448693 455013 0.999949 - . ID=CGI_10017517; scaffold337 WUBlastX RC_Helitron 915075 915239 46 - . . scaffold337 GLEAN mRNA 912502 926173 0.999981 - . ID=CGI_10028087; scaffold305 WUBlastX LINE_L1-Tx1 464358 465029 76 - . . scaffold305 GLEAN mRNA 449845 466663 0.999234 + . ID=CGI_10019141; scaffold1299 WUBlastX LINE_RTE-BovB 141262 141357 69 - . . scaffold1299 GLEAN mRNA 132868 184987 0.923911 + . ID=CGI_10007586; scaffold1299 WUBlastX LINE_RTE-BovB 141478 141612 81 - . . scaffold1299 GLEAN mRNA 132868 184987 0.923911 + . ID=CGI_10007586; scaffold35712 WUBlastX LINE_RTE-X 6243 6764 187 + . . scaffold35712 GLEAN mRNA 3858 24173 0.47659 + . ID=CGI_10001589; scaffold1532 WUBlastX LINE_RTE-X 410296 410694 102 - . . scaffold1532 GLEAN mRNA 405806 428910 0.729212 + . ID=CGI_10028250; scaffold1532 WUBlastX LINE_RTE-X 410766 410960 51 - . . scaffold1532 GLEAN mRNA 405806 428910 0.729212 + . ID=CGI_10028250; scaffold1484 WUBlastX LTR_Ngaro 107779 108111 140 - . . scaffold1484 GLEAN mRNA 103851 118273 0.818682 - . ID=CGI_10013260; scaffold36450 WUBlastX RC_Helitron 6972 8228 176 + . . scaffold36450 GLEAN mRNA 3992 12302 0.990019 + . ID=CGI_10001979; scaffold550 WUBlastX LTR_Gypsy 194263 194850 147 - . . scaffold550 GLEAN mRNA 192301 204322 0.634785 + . ID=CGI_10012493; scaffold41954 WUBlastX LINE_RTE-X 131364 132887 583 - . . scaffold41954 GLEAN mRNA 128673 136852 1 + . ID=CGI_10005855; scaffold1036 WUBlastX LINE_CR1 234004 235065 886 - . . scaffold1036 GLEAN mRNA 228869 245204 0.994909 + . ID=CGI_10019957; scaffold43686 WUBlastX LINE_CR1 17581 17952 56 - . . scaffold43686 GLEAN mRNA 15165 50110 0.498897 + . ID=CGI_10011753; scaffold98 WUBlastX LTR_Copia 309840 309890 25 - . . scaffold98 GLEAN mRNA 309260 309961 0.999991 - . ID=CGI_10012789; scaffold1778 WUBlastX LTR_Copia 41330 41422 40 + . . scaffold1778 GLEAN mRNA 34936 42863 0.220539 - . ID=CGI_10002479; scaffold1778 WUBlastX LTR_Copia 41451 41714 31 + . . scaffold1778 GLEAN mRNA 34936 42863 0.220539 - . ID=CGI_10002479; scaffold1259 WUBlastX LINE_CR1 17932 18102 40 - . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold1717 WUBlastX LINE_CR1-L2 64609 65064 55 + . . scaffold1717 GLEAN mRNA 58116 75262 0.980383 + . ID=CGI_10013391; scaffold38804 WUBlastX LINE_CR1-L2 32015 32281 51 - . . scaffold38804 GLEAN mRNA 25991 34532 0.371949 - . ID=CGI_10002976; scaffold536 WUBlastX LINE_CR1-L2 89611 89673 20 + . . scaffold536 GLEAN mRNA 68482 93233 0.999348 + . ID=CGI_10006670; scaffold41730 WUBlastX LINE_L2 104186 104311 27 - . . scaffold41730 GLEAN mRNA 104165 107871 0.999496 - . ID=CGI_10005530; scaffold41730 WUBlastX LINE_L2 104283 104522 36 - . . scaffold41730 GLEAN mRNA 104165 107871 0.999496 - . ID=CGI_10005530; scaffold36904 WUBlastX LINE_CR1 28294 28404 21 - . . scaffold36904 GLEAN mRNA 10005 31731 0.991888 - . ID=CGI_10002168; scaffold38934 WUBlastX LTR_Ngaro 20073 20228 43 - . . scaffold38934 GLEAN mRNA 14643 26625 0.999796 + . ID=CGI_10003096; scaffold20 WUBlastX LTR_Ngaro 731759 731773 24 - . . scaffold20 GLEAN mRNA 731591 731773 0.999372 - . ID=CGI_10023595; scaffold58 WUBlastX DNA_TcMar-Marin 564756 564896 78 - . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; scaffold517 WUBlastX LTR_Gypsy 15499 15696 33 + . . scaffold517 GLEAN mRNA 15448 15819 0.999372 + . ID=CGI_10008976; scaffold1149 WUBlastX DNA_hAT-Ac 220052 220396 48 + . . scaffold1149 GLEAN mRNA 215463 220751 0.999395 - . ID=CGI_10023460; scaffold47 WUBlastX DNA_TcMar-Tc2 24964 25263 76 - . . scaffold47 GLEAN mRNA 20135 33676 0.999415 - . ID=CGI_10002504; C32532 WUBlastX LINE_I-Nimb 648 737 41 - . . C32532 GLEAN mRNA 384 737 0.987944 - . ID=CGI_10000908; scaffold992 WUBlastX LINE_I-Nimb 19755 20267 38 + . . scaffold992 GLEAN mRNA 15235 21038 0.967342 + . ID=CGI_10007502; scaffold40952 WUBlastX DNA_Kolobok-Hyd 56413 56466 25 + . . scaffold40952 GLEAN mRNA 55267 57538 0.797605 + . ID=CGI_10004594; scaffold1836 WUBlastX LINE_Penelope 500753 501217 33 - . . scaffold1836 GLEAN mRNA 497009 501694 0.593384 - . ID=CGI_10026289; scaffold1366 WUBlastX LINE_RTE-X 137450 137752 29 - . . scaffold1366 GLEAN mRNA 134919 140492 0.999572 - . ID=CGI_10012293; scaffold3 WUBlastX LINE_RTE-X 670597 670857 33 + . . scaffold3 GLEAN mRNA 666595 677011 1 + . ID=CGI_10027296; scaffold43406 WUBlastX LTR_Gypsy 150005 150106 25 + . . scaffold43406 GLEAN mRNA 149831 150163 0.986655 + . ID=CGI_10010212; scaffold40208 WUBlastX LINE_RTE-X 82918 83280 46 + . . scaffold40208 GLEAN mRNA 72712 87059 0.842413 + . ID=CGI_10003956; scaffold1748 WUBlastX LINE_L2 22677 22844 39 - . . scaffold1748 GLEAN mRNA 17962 26532 0.999389 + . ID=CGI_10002255; scaffold40836 WUBlastX LINE_CR1 87214 87477 45 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold36390 WUBlastX LTR_Gypsy 5437 5805 86 + . . scaffold36390 GLEAN mRNA 5206 5853 0.999984 + . ID=CGI_10001879; scaffold32140 WUBlastX LTR_Gypsy-Cigr 1495 1803 80 + . . scaffold32140 GLEAN mRNA 1402 1839 0.840262 + . ID=CGI_10000846; scaffold269 WUBlastX LTR_Gypsy 436661 436825 42 - . . scaffold269 GLEAN mRNA 436625 461028 0.269378 - . ID=CGI_10019006; scaffold113 WUBlastX DNA_hAT-Ac 590403 590738 72 - . . scaffold113 GLEAN mRNA 582017 590807 0.980826 - . ID=CGI_10021294; scaffold596 WUBlastX RC_Helitron 195556 195774 95 - . . scaffold596 GLEAN mRNA 190755 207695 0.36732 - . ID=CGI_10009577; scaffold43818 WUBlastX LTR_Gypsy 321314 321757 74 + . . scaffold43818 GLEAN mRNA 318880 322672 0.37766 + . ID=CGI_10012777; scaffold1179 WUBlastX LINE_RTE-BovB 1068130 1068336 85 - . . scaffold1179 GLEAN mRNA 1063764 1075733 0.970354 + . ID=CGI_10027400; scaffold42674 WUBlastX LINE_L1-Tx1 89208 89600 73 + . . scaffold42674 GLEAN mRNA 75951 89776 0.488756 + . ID=CGI_10007441; scaffold1706 WUBlastX DNA_Kolobok 37817 38050 78 - . . scaffold1706 GLEAN mRNA 37786 56373 0.330403 - . ID=CGI_10003662; scaffold610 WUBlastX DNA_IS4EU 105701 106018 94 - . . scaffold610 GLEAN mRNA 101538 106463 0.827114 + . ID=CGI_10021088; scaffold378 WUBlastX LINE_L1 255095 255283 82 - . . scaffold378 GLEAN mRNA 247048 256613 0.78919 - . ID=CGI_10017643; scaffold191 WUBlastX DNA_NOF? 65015 65248 71 + . . scaffold191 GLEAN mRNA 59366 66619 0.998524 - . ID=CGI_10022409; scaffold40134 WUBlastX LINE_Penelope 39631 39792 45 + . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold479 WUBlastX LTR_Ngaro 237067 237097 70 - . . scaffold479 GLEAN mRNA 237067 237345 0.618241 - . ID=CGI_10015696; scaffold364 WUBlastX LINE_RTE-BovB 183524 183703 89 - . . scaffold364 GLEAN mRNA 181317 195118 0.999994 + . ID=CGI_10022683; scaffold38752 WUBlastX LINE_RTE-X 9001 9288 69 - . . scaffold38752 GLEAN mRNA 1672 15456 0.650722 - . ID=CGI_10002945; scaffold38752 WUBlastX LINE_RTE-X 9001 9288 69 - . . scaffold38752 GLEAN mRNA 5725 16402 0.993907 + . ID=CGI_10002946; scaffold1403 WUBlastX LTR_Pao 13838 14512 48 - . . scaffold1403 GLEAN mRNA 7932 14512 0.459466 - . ID=CGI_10020155; scaffold1403 WUBlastX LTR_Pao 14529 14635 48 - . . scaffold1403 GLEAN mRNA 14529 16909 0.998919 - . ID=CGI_10020156; scaffold35266 WUBlastX LTR_Copia 11224 12036 71 - . . scaffold35266 GLEAN mRNA 5619 15884 1 + . ID=CGI_10001434; scaffold57 WUBlastX LINE_L2 379412 379807 48 - . . scaffold57 GLEAN mRNA 361110 382565 0.943475 + . ID=CGI_10020552; scaffold57 WUBlastX LINE_L2 379412 379807 48 - . . scaffold57 GLEAN mRNA 361168 396087 0.322076 - . ID=CGI_10020553; scaffold1800 WUBlastX LTR_Gypsy 59388 59513 54 + . . scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; scaffold865 WUBlastX LTR_Ngaro 18910 19071 87 - . . scaffold865 GLEAN mRNA 7384 21120 0.465325 - . ID=CGI_10002639; scaffold410 WUBlastX LTR_DIRS 305593 305913 29 - . . scaffold410 GLEAN mRNA 298599 310174 0.996652 + . ID=CGI_10020635; scaffold619 WUBlastX LTR_Gypsy 1072833 1072991 23 - . . scaffold619 GLEAN mRNA 1070584 1074375 0.856709 - . ID=CGI_10025801; scaffold276 WUBlastX DNA_Harbinger 33883 34017 32 - . . scaffold276 GLEAN mRNA 27405 34935 0.425332 - . ID=CGI_10006435; scaffold121 WUBlastX LINE_R2-Hero 909264 909503 61 + . . scaffold121 GLEAN mRNA 904036 921193 0.999676 - . ID=CGI_10025685; scaffold1419 WUBlastX DNA_TcMar-Marin 80925 81260 83 + . . scaffold1419 GLEAN mRNA 15962 93471 0.812498 - . ID=CGI_10005452; scaffold1589 WUBlastX LINE_L1-Tx1 379966 380031 21 + . . scaffold1589 GLEAN mRNA 370243 390217 0.643157 + . ID=CGI_10024115; scaffold43726 WUBlastX LINE_RTE-X 160567 160752 93 - . . scaffold43726 GLEAN mRNA 145496 185415 0.997652 - . ID=CGI_10012023; scaffold885 WUBlastX LINE_RTE-BovB 503297 503725 39 + . . scaffold885 GLEAN mRNA 501162 507823 1 + . ID=CGI_10025210; scaffold39642 WUBlastX DNA_Maverick 12930 13112 64 - . . scaffold39642 GLEAN mRNA 12930 17873 0.634289 + . ID=CGI_10003495; scaffold1686 WUBlastX DNA_Sola 13236 13442 41 - . . scaffold1686 GLEAN mRNA 12792 13442 0.862137 - . ID=CGI_10005073; scaffold42570 WUBlastX LINE_CR1 16325 16465 106 + . . scaffold42570 GLEAN mRNA 8098 32477 0.949085 + . ID=CGI_10007233; scaffold1858 WUBlastX LINE_CR1-L2 72248 72565 86 + . . scaffold1858 GLEAN mRNA 68859 77379 0.839673 + . ID=CGI_10010443; scaffold42046 WUBlastX LINE_RTE-BovB 57816 58520 61 + . . scaffold42046 GLEAN mRNA 51319 68145 1 + . ID=CGI_10006002; scaffold40680 WUBlastX DNA_En-Spm 29826 30113 107 - . . scaffold40680 GLEAN mRNA 16 36776 0.246623 - . ID=CGI_10004353; scaffold911 WUBlastX DNA_En-Spm 168866 169216 64 + . . scaffold911 GLEAN mRNA 159613 170351 0.499121 + . ID=CGI_10012141; scaffold102 WUBlastX DNA_Harbinger 1279856 1280041 116 + . . scaffold102 GLEAN mRNA 1269983 1282871 0.999387 - . ID=CGI_10028488; C32318 WUBlastX LINE_L1 7548 8060 56 - . . C32318 GLEAN mRNA 2480 10983 0.999998 + . ID=CGI_10000883; C29788 WUBlastX LINE_L1 5714 6286 88 + . . C29788 GLEAN mRNA 5498 6724 0.72793 + . ID=CGI_10000560; scaffold41380 WUBlastX LINE_RTE-BovB 66648 66800 39 - . . scaffold41380 GLEAN mRNA 65148 69310 0.636303 + . ID=CGI_10005041; scaffold1813 WUBlastX LINE_RTE-X 112669 113073 27 - . . scaffold1813 GLEAN mRNA 106186 113865 0.957305 + . ID=CGI_10005994; scaffold1037 WUBlastX LTR_DIRS 344577 344789 108 + . . scaffold1037 GLEAN mRNA 341684 347440 0.722718 + . ID=CGI_10017464; scaffold714 WUBlastX DNA_TcMar-Tc1 392153 392302 54 + . . scaffold714 GLEAN mRNA 380562 399951 0.999675 - . ID=CGI_10016647; scaffold406 WUBlastX LTR_Gypsy-Cigr 132527 132640 44 + . . scaffold406 GLEAN mRNA 128241 151323 0.854188 - . ID=CGI_10023840; scaffold1459 WUBlastX LTR_Copia 109760 109852 29 + . . scaffold1459 GLEAN mRNA 92847 117435 0.999674 - . ID=CGI_10010107; scaffold1800 WUBlastX LINE_CR1 262647 263030 96 - . . scaffold1800 GLEAN mRNA 251153 263258 0.999949 - . ID=CGI_10016404; scaffold257 WUBlastX LTR_Gypsy 428896 429039 26 - . . scaffold257 GLEAN mRNA 408517 430332 0.376756 - . ID=CGI_10027910; scaffold257 WUBlastX LTR_Gypsy 428896 429039 26 - . . scaffold257 GLEAN mRNA 415447 429822 0.479397 + . ID=CGI_10027911; scaffold288 WUBlastX LTR_Gypsy 597625 597768 26 - . . scaffold288 GLEAN mRNA 597379 599061 0.999238 - . ID=CGI_10020682; scaffold980 WUBlastX LTR_Gypsy 572731 572874 26 + . . scaffold980 GLEAN mRNA 571438 573129 0.991145 + . ID=CGI_10019247; scaffold852 WUBlastX DNA_IS4EU 51841 51924 27 - . . scaffold852 GLEAN mRNA 46446 54395 0.990384 - . ID=CGI_10012034; scaffold802 WUBlastX LINE_L1 141128 141259 42 + . . scaffold802 GLEAN mRNA 137512 196873 0.499283 - . ID=CGI_10015727; scaffold1588 WUBlastX LINE_L1 71969 72565 83 + . . scaffold1588 GLEAN mRNA 56027 117187 0.840099 - . ID=CGI_10014772; scaffold1794 WUBlastX LINE_RTE-X 27877 28092 96 - . . scaffold1794 GLEAN mRNA 20538 42560 0.51959 + . ID=CGI_10019565; scaffold1870 WUBlastX LINE_RTE-X 110302 110475 28 + . . scaffold1870 GLEAN mRNA 96078 123718 0.283709 - . ID=CGI_10013182; scaffold1327 WUBlastX LINE_RTE-X 193442 193636 104 + . . scaffold1327 GLEAN mRNA 180097 196030 0.600145 + . ID=CGI_10014341; scaffold41344 WUBlastX LINE_L2 114500 114604 22 - . . scaffold41344 GLEAN mRNA 105897 115468 0.999612 + . ID=CGI_10004984; scaffold1532 WUBlastX LTR_Ngaro 638912 639115 105 + . . scaffold1532 GLEAN mRNA 638492 642462 0.995183 + . ID=CGI_10028264; scaffold1077 WUBlastX DNA_Kolobok-IS4 365091 365366 101 - . . scaffold1077 GLEAN mRNA 344081 378528 0.82291 + . ID=CGI_10017829; scaffold363 WUBlastX LINE_RTE-BovB 245014 245262 115 + . . scaffold363 GLEAN mRNA 238043 248043 0.648316 - . ID=CGI_10019299; scaffold664 WUBlastX DNA_TcMar-Tc1 393919 394272 107 - . . scaffold664 GLEAN mRNA 373118 396523 0.330346 - . ID=CGI_10021447; scaffold160 WUBlastX LTR_Pao 320231 320659 64 - . . scaffold160 GLEAN mRNA 319475 320748 0.628364 - . ID=CGI_10020588; scaffold43932 WUBlastX LINE_L2 78105 78320 22 + . . scaffold43932 GLEAN mRNA 77692 84984 0.999991 + . ID=CGI_10014110; scaffold43932 WUBlastX LINE_L2 78335 78634 68 + . . scaffold43932 GLEAN mRNA 77692 84984 0.999991 + . ID=CGI_10014110; scaffold450 WUBlastX LTR_Gypsy 79786 80043 141 - . . scaffold450 GLEAN mRNA 66067 80656 0.505252 - . ID=CGI_10010319; scaffold41356 WUBlastX LTR_Ngaro 12470 12760 110 - . . scaffold41356 GLEAN mRNA 5844 20035 0.990026 - . ID=CGI_10004993; scaffold43388 WUBlastX DNA_IS4EU 226436 227023 72 - . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold34016 WUBlastX LINE_Penelope 3294 3695 117 + . . scaffold34016 GLEAN mRNA 449 13407 0.445355 - . ID=CGI_10001181; scaffold493 WUBlastX LINE_RTE-X 74384 74767 67 - . . scaffold493 GLEAN mRNA 57003 100421 0.916759 + . ID=CGI_10007247; scaffold1807 WUBlastX LTR_DIRS 46900 47235 97 + . . scaffold1807 GLEAN mRNA 37010 47983 0.990974 - . ID=CGI_10004644; scaffold1800 WUBlastX LINE_L1-Tx1 32505 32834 77 - . . scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; scaffold1237 WUBlastX LINE_L1-Tx1 204858 205070 98 + . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold42408 WUBlastX LINE_L1-Tx1 112851 113072 94 + . . scaffold42408 GLEAN mRNA 111494 115012 0.832978 - . ID=CGI_10006751; scaffold42408 WUBlastX LINE_L1-Tx1 113436 113525 31 + . . scaffold42408 GLEAN mRNA 111494 115012 0.832978 - . ID=CGI_10006751; scaffold1865 WUBlastX LINE_L2 355701 356030 56 - . . scaffold1865 GLEAN mRNA 344097 356570 0.999624 + . ID=CGI_10013550; scaffold502 WUBlastX LINE_CR1 625286 625795 124 - . . scaffold502 GLEAN mRNA 606784 627664 0.999597 + . ID=CGI_10024338; scaffold39858 WUBlastX LTR_Pao 73353 73451 21 - . . scaffold39858 GLEAN mRNA 65424 78749 0.99005 + . ID=CGI_10003660; scaffold288 WUBlastX LTR_Pao 168714 169016 85 + . . scaffold288 GLEAN mRNA 165543 215886 0.392804 - . ID=CGI_10020660; scaffold488 WUBlastX LINE_L2 45236 45625 118 - . . scaffold488 GLEAN mRNA 23091 53480 0.998314 - . ID=CGI_10005407; scaffold42022 WUBlastX DNA_IS4EU 44969 45058 30 - . . scaffold42022 GLEAN mRNA 12310 51169 0.982585 - . ID=CGI_10006049; scaffold42022 WUBlastX DNA_IS4EU 45151 45198 21 - . . scaffold42022 GLEAN mRNA 12310 51169 0.982585 - . ID=CGI_10006049; scaffold393 WUBlastX LINE_L1-Tx1 1041935 1042108 46 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold138 WUBlastX LINE_L1-Tx1 26070 26207 37 - . . scaffold138 GLEAN mRNA 800 34081 0.879441 + . ID=CGI_10008423; scaffold1454 WUBlastX DNA_Zator 63934 64416 113 - . . scaffold1454 GLEAN mRNA 63589 73088 0.838276 - . ID=CGI_10004314; scaffold579 WUBlastX LTR_Pao 215252 215758 28 + . . scaffold579 GLEAN mRNA 193436 221323 0.863149 + . ID=CGI_10011264; scaffold79 WUBlastX DNA_TcMar-Tc1 261216 261521 66 - . . scaffold79 GLEAN mRNA 257196 271359 0.644901 + . ID=CGI_10024620; scaffold352 WUBlastX LTR_Gypsy 153662 154309 136 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold1817 WUBlastX LTR_Gypsy 24048 24665 145 + . . scaffold1817 GLEAN mRNA 9897 44966 0.453567 - . ID=CGI_10005250; scaffold401 WUBlastX LINE_RTE-BovB 155825 156112 77 - . . scaffold401 GLEAN mRNA 151217 157765 0.728444 + . ID=CGI_10006994; scaffold41034 WUBlastX LTR_DIRS 58402 58653 79 + . . scaffold41034 GLEAN mRNA 40186 62880 0.65884 + . ID=CGI_10004651; scaffold987 WUBlastX LINE_L2 81570 82166 80 + . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold1174 WUBlastX DNA_hAT-Blackja 1075726 1075941 93 - . . scaffold1174 GLEAN mRNA 1072564 1077795 0.506907 + . ID=CGI_10026080; scaffold1174 WUBlastX DNA_hAT-Blackja 1076466 1076669 28 - . . scaffold1174 GLEAN mRNA 1072564 1077795 0.506907 + . ID=CGI_10026080; scaffold425 WUBlastX DNA_Kolobok 142285 142425 84 + . . scaffold425 GLEAN mRNA 142243 142446 1 + . ID=CGI_10025978; scaffold210 WUBlastX LINE_RTE-X 148291 148890 35 + . . scaffold210 GLEAN mRNA 130765 152251 0.999676 - . ID=CGI_10015883; scaffold914 WUBlastX LINE_CR1 386960 387151 70 + . . scaffold914 GLEAN mRNA 383322 392651 0.969071 - . ID=CGI_10018890; scaffold332 WUBlastX LINE_RTE-X 283359 284297 585 + . . scaffold332 GLEAN mRNA 282632 290184 0.40014 - . ID=CGI_10020880; scaffold332 WUBlastX LINE_RTE-X 284345 285211 344 + . . scaffold332 GLEAN mRNA 282632 290184 0.40014 - . ID=CGI_10020880; scaffold1715 WUBlastX LINE_R2-Hero 26436 26993 112 - . . scaffold1715 GLEAN mRNA 4936 29728 0.469378 + . ID=CGI_10019659; scaffold1696 WUBlastX LTR_Pao 2524 2757 27 + . . scaffold1696 GLEAN mRNA 261 23562 0.414457 - . ID=CGI_10003674; scaffold1696 WUBlastX LTR_Pao 3188 3280 74 + . . scaffold1696 GLEAN mRNA 261 23562 0.414457 - . ID=CGI_10003674; scaffold534 WUBlastX LTR_Gypsy-Cigr 71501 72514 59 - . . scaffold534 GLEAN mRNA 66095 75550 0.716363 + . ID=CGI_10005164; scaffold1217 WUBlastX LTR_Gypsy 133246 133965 176 + . . scaffold1217 GLEAN mRNA 132340 134181 0.739794 + . ID=CGI_10009995; scaffold90 WUBlastX LTR_Gypsy 137890 139008 128 + . . scaffold90 GLEAN mRNA 135730 142790 0.547035 + . ID=CGI_10015161; scaffold39972 WUBlastX LTR_Gypsy 53422 53775 67 - . . scaffold39972 GLEAN mRNA 49348 55126 0.885383 + . ID=CGI_10003709; scaffold1894 WUBlastX LINE_L1 40865 41185 44 - . . scaffold1894 GLEAN mRNA 18177 67015 0.499328 - . ID=CGI_10013334; scaffold203 WUBlastX DNA_TcMar-Marin 112486 112896 68 - . . scaffold203 GLEAN mRNA 85709 116665 0.258685 + . ID=CGI_10021064; scaffold336 WUBlastX LINE_CR1-L2 217513 217590 25 - . . scaffold336 GLEAN mRNA 208327 217851 1 - . ID=CGI_10012569; scaffold1771 WUBlastX LTR_Gypsy 94132 94944 139 - . . scaffold1771 GLEAN mRNA 88638 95441 0.521534 - . ID=CGI_10004387; scaffold1009 WUBlastX LINE_RTE-BovB 802731 802928 93 - . . scaffold1009 GLEAN mRNA 796284 807727 0.387799 - . ID=CGI_10028763; scaffold1009 WUBlastX LINE_RTE-BovB 802731 802928 93 - . . scaffold1009 GLEAN mRNA 802465 805561 0.994697 + . ID=CGI_10028764; scaffold1009 WUBlastX LINE_RTE-BovB 803136 803255 81 - . . scaffold1009 GLEAN mRNA 796284 807727 0.387799 - . ID=CGI_10028763; scaffold1009 WUBlastX LINE_RTE-BovB 803136 803255 81 - . . scaffold1009 GLEAN mRNA 802465 805561 0.994697 + . ID=CGI_10028764; C28218 WUBlastX LTR_Pao 3906 4367 1273 - . . C28218 GLEAN mRNA 3900 4367 0.999999 - . ID=CGI_10000410; scaffold1103 WUBlastX LINE_L2 13836 14642 595 + . . scaffold1103 GLEAN mRNA 2927 17962 0.836195 - . ID=CGI_10004868; scaffold1103 WUBlastX LINE_L2 14639 15520 457 + . . scaffold1103 GLEAN mRNA 2927 17962 0.836195 - . ID=CGI_10004868; scaffold1423 WUBlastX LTR_Ngaro 1058089 1058757 143 + . . scaffold1423 GLEAN mRNA 1057538 1060967 0.980388 + . ID=CGI_10025454; scaffold556 WUBlastX LINE_L1-Tx1 194506 194718 70 + . . scaffold556 GLEAN mRNA 194019 202410 0.999351 - . ID=CGI_10016802; scaffold39472 WUBlastX LTR_DIRS 39921 40076 32 + . . scaffold39472 GLEAN mRNA 36257 64378 0.862936 + . ID=CGI_10003397; scaffold39472 WUBlastX LTR_DIRS 40113 40397 154 + . . scaffold39472 GLEAN mRNA 36257 64378 0.862936 + . ID=CGI_10003397; scaffold1321 WUBlastX LTR_DIRS 136803 137201 205 - . . scaffold1321 GLEAN mRNA 136608 137201 1 - . ID=CGI_10010662; scaffold162 WUBlastX LTR_Gypsy 270802 271191 122 - . . scaffold162 GLEAN mRNA 254328 277132 0.643433 - . ID=CGI_10014094; scaffold1210 WUBlastX DNA_Academ 242968 243083 85 - . . scaffold1210 GLEAN mRNA 242968 243372 0.866433 - . ID=CGI_10014607; scaffold1189 WUBlastX LINE_L1 634809 635063 53 - . . scaffold1189 GLEAN mRNA 632624 639695 1 - . ID=CGI_10023828; scaffold351 WUBlastX LINE_Penelope 102286 102585 82 - . . scaffold351 GLEAN mRNA 94305 104490 0.817501 - . ID=CGI_10022591; scaffold1862 WUBlastX LINE_L1 194597 195139 97 + . . scaffold1862 GLEAN mRNA 170077 209119 0.953083 - . ID=CGI_10021893; scaffold828 WUBlastX DNA_TcMar-Tc2 58582 59598 196 - . . scaffold828 GLEAN mRNA 15085 78014 0.596994 - . ID=CGI_10007364; scaffold143 WUBlastX LINE_L1-Tx1 186962 187366 106 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold1750 WUBlastX LTR_Pao 634133 634423 32 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold99 WUBlastX LINE_L2 32487 33242 141 - . . scaffold99 GLEAN mRNA 22545 38354 0.404855 + . ID=CGI_10021189; scaffold1213 WUBlastX DNA_TcMar-Tc1 251076 251294 94 - . . scaffold1213 GLEAN mRNA 226891 261241 0.989794 + . ID=CGI_10027441; scaffold1788 WUBlastX LINE_L2 396613 397344 1019 + . . scaffold1788 GLEAN mRNA 396613 397392 0.999999 + . ID=CGI_10019927; scaffold1186 WUBlastX DNA_Crypton 243345 243824 173 - . . scaffold1186 GLEAN mRNA 224167 244631 0.351511 - . ID=CGI_10010599; scaffold172 WUBlastX LTR_Gypsy 16010 16171 95 + . . scaffold172 GLEAN mRNA 5002 17897 0.999274 - . ID=CGI_10013508; scaffold461 WUBlastX LTR_Gypsy 507452 508414 171 + . . scaffold461 GLEAN mRNA 502998 509730 0.979735 + . ID=CGI_10020117; C34256 WUBlastX DNA_Kolobok 9999 10334 118 + . . C34256 GLEAN mRNA 8451 10352 0.999999 + . ID=CGI_10001257; scaffold86 WUBlastX DNA_Kolobok 149346 149534 51 + . . scaffold86 GLEAN mRNA 141744 153852 0.999675 - . ID=CGI_10028139; scaffold86 WUBlastX DNA_Kolobok 149896 150054 77 + . . scaffold86 GLEAN mRNA 141744 153852 0.999675 - . ID=CGI_10028139; scaffold43920 WUBlastX LINE_L1-Tx1 57397 60831 1130 + . . scaffold43920 GLEAN mRNA 44281 62633 0.726327 + . ID=CGI_10013987; scaffold689 WUBlastX LINE_CR1 166963 167013 25 + . . scaffold689 GLEAN mRNA 162763 181677 0.999 - . ID=CGI_10014826; scaffold40104 WUBlastX DNA_IS4EU 34871 35101 22 + . . scaffold40104 GLEAN mRNA 23202 39290 0.364513 - . ID=CGI_10003867; scaffold40104 WUBlastX DNA_IS4EU 35775 36605 129 + . . scaffold40104 GLEAN mRNA 23202 39290 0.364513 - . ID=CGI_10003867; scaffold143 WUBlastX LINE_L1 187964 188143 89 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold39134 WUBlastX LINE_RTE-X 42390 42575 47 - . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold801 WUBlastX LINE_RTE-X 273713 273856 36 - . . scaffold801 GLEAN mRNA 264907 277016 0.581073 - . ID=CGI_10024082; scaffold1054 WUBlastX LINE_L2 313193 313351 63 + . . scaffold1054 GLEAN mRNA 312606 322566 0.968602 + . ID=CGI_10012967; scaffold36936 WUBlastX DNA_Crypton 15097 15618 182 - . . scaffold36936 GLEAN mRNA 314 25498 0.932631 - . ID=CGI_10002182; scaffold40512 WUBlastX DNA_IS4EU 50930 51472 91 + . . scaffold40512 GLEAN mRNA 32163 58255 0.783329 + . ID=CGI_10004193; scaffold35406 WUBlastX RC_Helitron 13388 14164 129 + . . scaffold35406 GLEAN mRNA 1505 18996 0.688101 - . ID=CGI_10001499; C27694 WUBlastX DNA_Maverick 2694 3020 230 - . . C27694 GLEAN mRNA 2532 3020 1 - . ID=CGI_10000376; scaffold43726 WUBlastX LINE_RTE-BovB 191235 192074 196 + . . scaffold43726 GLEAN mRNA 189584 195489 0.999572 - . ID=CGI_10012025; scaffold203 WUBlastX DNA_Sola 397563 397976 92 + . . scaffold203 GLEAN mRNA 376437 414685 0.482825 + . ID=CGI_10021070; scaffold203 WUBlastX DNA_Sola 397563 397976 92 + . . scaffold203 GLEAN mRNA 380949 400052 0.995245 - . ID=CGI_10021071; scaffold1673 WUBlastX DNA_Crypton 103994 104674 223 + . . scaffold1673 GLEAN mRNA 58935 108305 0.828275 + . ID=CGI_10013571; scaffold37790 WUBlastX LTR_Ngaro 9886 10131 96 - . . scaffold37790 GLEAN mRNA 1900 11693 1 - . ID=CGI_10002498; scaffold37790 WUBlastX LTR_Ngaro 10173 10550 139 - . . scaffold37790 GLEAN mRNA 1900 11693 1 - . ID=CGI_10002498; scaffold43388 WUBlastX LINE_CR1 223676 224806 904 + . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold513 WUBlastX LTR_Pao 11485 12846 881 + . . scaffold513 GLEAN mRNA 2113 39536 0.917684 + . ID=CGI_10022134; scaffold1260 WUBlastX DNA_Academ 101818 102102 144 - . . scaffold1260 GLEAN mRNA 101391 106059 0.529962 - . ID=CGI_10005944; scaffold1260 WUBlastX DNA_Academ 101818 102102 144 - . . scaffold1260 GLEAN mRNA 97154 106777 1 + . ID=CGI_10005943; scaffold1260 WUBlastX DNA_Academ 102082 102618 91 - . . scaffold1260 GLEAN mRNA 101391 106059 0.529962 - . ID=CGI_10005944; scaffold1260 WUBlastX DNA_Academ 102082 102618 91 - . . scaffold1260 GLEAN mRNA 97154 106777 1 + . ID=CGI_10005943; scaffold1260 WUBlastX DNA_Academ 103026 103310 62 - . . scaffold1260 GLEAN mRNA 101391 106059 0.529962 - . ID=CGI_10005944; scaffold1260 WUBlastX DNA_Academ 103026 103310 62 - . . scaffold1260 GLEAN mRNA 97154 106777 1 + . ID=CGI_10005943; scaffold415 WUBlastX LINE_RTE-BovB 44905 47013 1590 + . . scaffold415 GLEAN mRNA 36227 55197 0.784737 - . ID=CGI_10004218; scaffold976 WUBlastX LINE_L2 371097 371345 98 + . . scaffold976 GLEAN mRNA 356629 381531 0.51151 + . ID=CGI_10014020; scaffold809 WUBlastX LTR_Ngaro 105673 106461 198 + . . scaffold809 GLEAN mRNA 102798 115167 0.991748 + . ID=CGI_10006490; scaffold809 WUBlastX LTR_Ngaro 105379 106455 183 + . . scaffold809 GLEAN mRNA 102798 115167 0.991748 + . ID=CGI_10006490; scaffold145 WUBlastX LINE_RTE-BovB 1137508 1137801 35 - . . scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold1532 WUBlastX LTR_Gypsy 987745 988080 111 + . . scaffold1532 GLEAN mRNA 980578 997386 0.999875 - . ID=CGI_10028278; scaffold905 WUBlastX LINE_L1-Tx1 5805 5924 38 + . . scaffold905 GLEAN mRNA 3174 14725 0.840832 + . ID=CGI_10004338; scaffold237 WUBlastX LINE_RTE-X 319245 320036 185 - . . scaffold237 GLEAN mRNA 315225 321061 0.999786 + . ID=CGI_10021581; scaffold632 WUBlastX LTR_Pao 94565 98128 2301 + . . scaffold632 GLEAN mRNA 94211 107626 0.991776 + . ID=CGI_10018438; scaffold43538 WUBlastX LINE_CR1 155416 155844 222 + . . scaffold43538 GLEAN mRNA 151937 158307 1 - . ID=CGI_10010823; scaffold37532 WUBlastX LTR_Gypsy 32842 33687 79 - . . scaffold37532 GLEAN mRNA 24867 43092 0.82218 + . ID=CGI_10002401; scaffold753 WUBlastX LINE_L1 316608 317237 244 - . . scaffold753 GLEAN mRNA 307757 329663 0.499275 + . ID=CGI_10014210; scaffold6 WUBlastX LTR_Pao 125742 126248 37 + . . scaffold6 GLEAN mRNA 120164 144778 0.978215 - . ID=CGI_10022297; scaffold911 WUBlastX LTR_Gypsy 94523 94864 116 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX LTR_Gypsy 95018 95302 42 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX LTR_Gypsy 95647 95775 98 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold1154 WUBlastX LTR_DIRS 328382 329125 125 + . . scaffold1154 GLEAN mRNA 300263 342126 0.0862783 - . ID=CGI_10026162; scaffold1863 WUBlastX DNA_Harbinger 372536 373066 239 + . . scaffold1863 GLEAN mRNA 370491 381418 0.892726 + . ID=CGI_10016696; scaffold334 WUBlastX LINE_L1-Tx1 1046272 1047297 166 + . . scaffold334 GLEAN mRNA 1033963 1069994 0.961302 - . ID=CGI_10025971; scaffold1244 WUBlastX LINE_Penelope 571436 572038 272 - . . scaffold1244 GLEAN mRNA 508938 634898 0.0392589 - . ID=CGI_10020838; scaffold210 WUBlastX LINE_RTE-X 141794 142114 153 + . . scaffold210 GLEAN mRNA 130765 152251 0.999676 - . ID=CGI_10015883; scaffold686 WUBlastX DNA_TcMar-Tc1 12223 12687 244 + . . scaffold686 GLEAN mRNA 9292 17710 0.993892 - . ID=CGI_10004461; scaffold43686 WUBlastX LTR_Gypsy 188362 188532 31 - . . scaffold43686 GLEAN mRNA 172665 193661 0.978405 - . ID=CGI_10011758; scaffold37760 WUBlastX LTR_DIRS 21433 21609 43 - . . scaffold37760 GLEAN mRNA 11272 38265 0.979677 + . ID=CGI_10002466; scaffold1753 WUBlastX RC_Helitron 42602 43102 22 + . . scaffold1753 GLEAN mRNA 42409 50828 0.996749 + . ID=CGI_10010802; scaffold689 WUBlastX LTR_Gypsy 354999 355964 20 + . . scaffold689 GLEAN mRNA 335137 371615 0.991732 - . ID=CGI_10014831; scaffold241 WUBlastX DNA_MuDR 393567 393746 107 - . . scaffold241 GLEAN mRNA 380326 398675 0.495388 - . ID=CGI_10025102; scaffold517 WUBlastX LINE_Penelope 27835 28518 306 + . . scaffold517 GLEAN mRNA 26711 42046 0.883003 + . ID=CGI_10008977; scaffold933 WUBlastX LINE_RTE-X 322257 323393 239 + . . scaffold933 GLEAN mRNA 320919 329030 0.990126 + . ID=CGI_10016722; scaffold780 WUBlastX LINE_L2 216345 217037 250 + . . scaffold780 GLEAN mRNA 205875 237446 0.523885 + . ID=CGI_10024723; scaffold1603 WUBlastX LTR_Pao 331801 331980 84 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold934 WUBlastX LTR_Ngaro 407857 408132 22 + . . scaffold934 GLEAN mRNA 385356 409492 0.99982 + . ID=CGI_10015451; scaffold40836 WUBlastX LINE_RTE-X 86315 86563 83 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold209 WUBlastX LTR_DIRS 250370 250819 145 + . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX LTR_DIRS 250810 251283 149 + . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX LTR_DIRS 251253 251363 67 + . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold77 WUBlastX LTR_Gypsy 1454484 1455152 128 - . . scaffold77 GLEAN mRNA 1435771 1455368 0.401661 + . ID=CGI_10028040; scaffold41954 WUBlastX LINE_L1-Tx1 102991 103362 123 - . . scaffold41954 GLEAN mRNA 93049 113682 0.989895 + . ID=CGI_10005853; scaffold41954 WUBlastX LINE_L1-Tx1 103267 103362 123 - . . scaffold41954 GLEAN mRNA 103267 126908 0.678183 - . ID=CGI_10005854; scaffold41954 WUBlastX LINE_L1-Tx1 103382 103759 139 - . . scaffold41954 GLEAN mRNA 93049 113682 0.989895 + . ID=CGI_10005853; scaffold41954 WUBlastX LINE_L1-Tx1 103382 103759 139 - . . scaffold41954 GLEAN mRNA 103267 126908 0.678183 - . ID=CGI_10005854; scaffold42348 WUBlastX LINE_RTE-X 101837 102529 305 - . . scaffold42348 GLEAN mRNA 96568 107151 0.643244 - . ID=CGI_10006683; scaffold1703 WUBlastX LTR_Gypsy 669372 671030 402 + . . scaffold1703 GLEAN mRNA 642760 671813 0.998976 - . ID=CGI_10023072; scaffold896 WUBlastX LINE_L1-Tx1 247734 247997 29 + . . scaffold896 GLEAN mRNA 238310 251019 0.969948 - . ID=CGI_10022839; scaffold1722 WUBlastX LINE_R2-Hero 244600 245169 427 - . . scaffold1722 GLEAN mRNA 244436 245572 0.963225 + . ID=CGI_10014886; scaffold1546 WUBlastX DNA_Kolobok 183480 183653 99 - . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold1546 WUBlastX DNA_Kolobok 184117 184311 79 - . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold1546 WUBlastX DNA_Kolobok 184533 184859 111 - . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold1546 WUBlastX DNA_Kolobok 184894 184980 22 - . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold392 WUBlastX LINE_RTE-BovB 448886 450448 269 - . . scaffold392 GLEAN mRNA 426913 455766 0.44936 + . ID=CGI_10024218; scaffold509 WUBlastX LINE_L1-Tx1 256872 257288 84 + . . scaffold509 GLEAN mRNA 253981 269937 0.999344 + . ID=CGI_10018647; scaffold365 WUBlastX LTR_Pao 250496 250693 118 + . . scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; scaffold1561 WUBlastX LINE_RTE-X 97746 97982 58 - . . scaffold1561 GLEAN mRNA 90687 107153 0.999946 - . ID=CGI_10005694; scaffold1350 WUBlastX LINE_RTE-X 398346 398513 81 - . . scaffold1350 GLEAN mRNA 393414 411683 0.728523 + . ID=CGI_10017317; C35172 WUBlastX DNA_En-Spm 1741 3876 340 + . . C35172 GLEAN mRNA 161 6399 0.907032 + . ID=CGI_10001431; scaffold42128 WUBlastX DNA_TcMar-Tc1 11706 12173 123 + . . scaffold42128 GLEAN mRNA 1970 15266 0.99078 + . ID=CGI_10006194; scaffold773 WUBlastX DNA_Maverick 239161 240051 424 - . . scaffold773 GLEAN mRNA 235107 267865 0.138953 - . ID=CGI_10011348; scaffold773 WUBlastX DNA_Maverick 240711 240761 33 - . . scaffold773 GLEAN mRNA 235107 267865 0.138953 - . ID=CGI_10011348; scaffold773 WUBlastX DNA_Maverick 240764 240871 32 - . . scaffold773 GLEAN mRNA 235107 267865 0.138953 - . ID=CGI_10011348; scaffold1753 WUBlastX LINE_L1-Tx1 265192 265581 55 - . . scaffold1753 GLEAN mRNA 261922 275452 0.949513 - . ID=CGI_10010811; scaffold1753 WUBlastX LINE_L1-Tx1 266805 267875 40 - . . scaffold1753 GLEAN mRNA 261922 275452 0.949513 - . ID=CGI_10010811; scaffold198 WUBlastX DNA_TcMar-Tc1 131924 132136 143 - . . scaffold198 GLEAN mRNA 125037 150103 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_TcMar-Tc1 131924 132136 143 - . . scaffold198 GLEAN mRNA 129155 148314 0.927276 - . ID=CGI_10027796; scaffold198 WUBlastX DNA_TcMar-Tc1 132106 132432 195 - . . scaffold198 GLEAN mRNA 125037 150103 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_TcMar-Tc1 132106 132432 195 - . . scaffold198 GLEAN mRNA 129155 148314 0.927276 - . ID=CGI_10027796; scaffold198 WUBlastX DNA_TcMar-Tc1 132473 132856 172 - . . scaffold198 GLEAN mRNA 125037 150103 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_TcMar-Tc1 132473 132856 172 - . . scaffold198 GLEAN mRNA 129155 148314 0.927276 - . ID=CGI_10027796; scaffold243 WUBlastX LTR_Gypsy 117674 118318 474 - . . scaffold243 GLEAN mRNA 107331 122281 0.913043 + . ID=CGI_10006817; scaffold43702 WUBlastX DNA_hAT 10612 12018 475 - . . scaffold43702 GLEAN mRNA 10417 12018 1 - . ID=CGI_10011898; scaffold43702 WUBlastX DNA_hAT 10612 12066 475 - . . scaffold43702 GLEAN mRNA 8720 20816 0.998449 + . ID=CGI_10011897; scaffold82 WUBlastX LINE_L1 688533 688589 36 - . . scaffold82 GLEAN mRNA 671230 690151 0.999877 - . ID=CGI_10025267; scaffold1067 WUBlastX DNA_En-Spm 99666 100829 276 + . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold1032 WUBlastX LINE_RTE-X 708134 708838 84 + . . scaffold1032 GLEAN mRNA 707458 710864 0.590104 - . ID=CGI_10021705; scaffold41054 WUBlastX DNA_TcMar-Marin 35288 35695 211 - . . scaffold41054 GLEAN mRNA 15508 39181 0.98779 - . ID=CGI_10004673; scaffold41054 WUBlastX DNA_TcMar-Marin 36165 36542 153 - . . scaffold41054 GLEAN mRNA 15508 39181 0.98779 - . ID=CGI_10004673; scaffold550 WUBlastX LINE_L1-Tx1 59567 61198 225 - . . scaffold550 GLEAN mRNA 42295 70110 0.723644 + . ID=CGI_10012483; scaffold550 WUBlastX LINE_L1-Tx1 61206 61277 63 - . . scaffold550 GLEAN mRNA 42295 70110 0.723644 + . ID=CGI_10012483; scaffold40440 WUBlastX LTR_Ngaro 51469 52263 353 + . . scaffold40440 GLEAN mRNA 51085 65707 0.320377 - . ID=CGI_10004144; scaffold40440 WUBlastX LTR_Ngaro 52314 52529 63 + . . scaffold40440 GLEAN mRNA 51085 65707 0.320377 - . ID=CGI_10004144; scaffold40440 WUBlastX LTR_Ngaro 52511 52627 20 + . . scaffold40440 GLEAN mRNA 51085 65707 0.320377 - . ID=CGI_10004144; scaffold1154 WUBlastX LTR_DIRS 632783 633778 488 - . . scaffold1154 GLEAN mRNA 592712 637655 0.191782 - . ID=CGI_10026178; scaffold1154 WUBlastX LTR_DIRS 632783 633778 488 - . . scaffold1154 GLEAN mRNA 624576 639648 0.593391 + . ID=CGI_10026180; scaffold695 WUBlastX LINE_RTE-BovB 715568 716821 528 + . . scaffold695 GLEAN mRNA 705983 727911 0.988963 - . ID=CGI_10023304; scaffold950 WUBlastX LINE_L2 390658 391149 189 - . . scaffold950 GLEAN mRNA 384027 397632 0.588964 + . ID=CGI_10022929; scaffold664 WUBlastX DNA_Sola 215370 216005 172 + . . scaffold664 GLEAN mRNA 213415 231457 0.897817 + . ID=CGI_10021440; scaffold1715 WUBlastX LINE_Penelope 326339 326719 89 + . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold550 WUBlastX DNA_Academ 260459 260869 231 - . . scaffold550 GLEAN mRNA 260447 260869 0.579462 - . ID=CGI_10012496; scaffold1485 WUBlastX LINE_RTE-X 48294 48602 185 - . . scaffold1485 GLEAN mRNA 39332 48639 0.999437 - . ID=CGI_10003293; scaffold1485 WUBlastX LINE_RTE-X 48601 48639 194 - . . scaffold1485 GLEAN mRNA 39332 48639 0.999437 - . ID=CGI_10003293; scaffold721 WUBlastX LINE_L2 83025 83123 42 + . . scaffold721 GLEAN mRNA 68079 89248 0.992034 + . ID=CGI_10021995; scaffold721 WUBlastX LINE_L2 83197 83709 328 + . . scaffold721 GLEAN mRNA 68079 89248 0.992034 + . ID=CGI_10021995; scaffold1399 WUBlastX LTR_DIRS 117515 118438 596 - . . scaffold1399 GLEAN mRNA 95731 121782 0.470575 + . ID=CGI_10007050; scaffold419 WUBlastX DNA_Kolobok 895794 896087 34 + . . scaffold419 GLEAN mRNA 894890 897714 0.983071 + . ID=CGI_10028373; scaffold419 WUBlastX DNA_Kolobok 896075 896497 197 + . . scaffold419 GLEAN mRNA 894890 897714 0.983071 + . ID=CGI_10028373; scaffold419 WUBlastX DNA_Kolobok 896641 896829 105 + . . scaffold419 GLEAN mRNA 894890 897714 0.983071 + . ID=CGI_10028373; scaffold419 WUBlastX DNA_Kolobok 896952 897197 108 + . . scaffold419 GLEAN mRNA 894890 897714 0.983071 + . ID=CGI_10028373; scaffold419 WUBlastX DNA_Kolobok 897278 897448 79 + . . scaffold419 GLEAN mRNA 894890 897714 0.983071 + . ID=CGI_10028373; scaffold419 WUBlastX DNA_Kolobok 897556 897705 115 + . . scaffold419 GLEAN mRNA 894890 897714 0.983071 + . ID=CGI_10028373; scaffold247 WUBlastX LINE_L1-Tx1 329473 330546 65 - . . scaffold247 GLEAN mRNA 324544 333278 0.675637 - . ID=CGI_10018594; scaffold502 WUBlastX LINE_L1 75879 76517 228 + . . scaffold502 GLEAN mRNA 66995 88059 0.642831 + . ID=CGI_10024313; scaffold509 WUBlastX LINE_L1-Tx1 258288 258599 78 + . . scaffold509 GLEAN mRNA 253981 269937 0.999344 + . ID=CGI_10018647; scaffold1249 WUBlastX LINE_RTE-X 130036 130407 100 + . . scaffold1249 GLEAN mRNA 124551 131714 0.558382 + . ID=CGI_10019051; C26936 WUBlastX LTR_Gypsy 2205 2915 412 - . . C26936 GLEAN mRNA 652 3529 1 - . ID=CGI_10000336; scaffold501 WUBlastX LINE_RTE-X 790934 792328 607 - . . scaffold501 GLEAN mRNA 786323 819712 0.813868 + . ID=CGI_10027531; scaffold36140 WUBlastX LINE_CR1-L2 8933 9388 298 - . . scaffold36140 GLEAN mRNA 6624 23811 0.998174 + . ID=CGI_10001795; scaffold36 WUBlastX LTR_Gypsy 3743 6757 796 + . . scaffold36 GLEAN mRNA 2519 8438 0.614104 + . ID=CGI_10001028; scaffold41372 WUBlastX LINE_L1-Tx1 73758 74123 135 - . . scaffold41372 GLEAN mRNA 67893 79286 0.261998 + . ID=CGI_10005012; scaffold535 WUBlastX LINE_CR1-L2 565628 565780 26 + . . scaffold535 GLEAN mRNA 563508 572309 0.883286 + . ID=CGI_10020301; scaffold448 WUBlastX LINE_CR1-L2 66612 66758 45 + . . scaffold448 GLEAN mRNA 53576 85492 0.998765 + . ID=CGI_10024929; scaffold42570 WUBlastX LINE_CR1-L2 16542 16592 21 + . . scaffold42570 GLEAN mRNA 8098 32477 0.949085 + . ID=CGI_10007233; scaffold1166 WUBlastX LINE_CR1 13288 13353 23 - . . scaffold1166 GLEAN mRNA 4220 15993 0.883594 + . ID=CGI_10006284; scaffold332 WUBlastX LTR_Ngaro 411163 411621 48 - . . scaffold332 GLEAN mRNA 403551 412368 0.544643 + . ID=CGI_10020886; scaffold206 WUBlastX LTR_Gypsy 79716 79805 22 + . . scaffold206 GLEAN mRNA 57948 87960 0.702119 + . ID=CGI_10011372; scaffold230 WUBlastX LTR_Gypsy 218503 218973 57 - . . scaffold230 GLEAN mRNA 178498 220276 0.270873 - . ID=CGI_10011252; scaffold177 WUBlastX DNA_Harbinger 283628 283807 72 - . . scaffold177 GLEAN mRNA 240974 299351 0.498178 - . ID=CGI_10016064; scaffold43358 WUBlastX DNA_IS4EU 219389 219604 62 - . . scaffold43358 GLEAN mRNA 218442 219604 0.593251 - . ID=CGI_10009980; scaffold556 WUBlastX LINE_L1 194300 194449 69 + . . scaffold556 GLEAN mRNA 194019 202410 0.999351 - . ID=CGI_10016802; scaffold1497 WUBlastX DNA_Kolobok 24907 25080 53 + . . scaffold1497 GLEAN mRNA 15026 34353 0.836332 + . ID=CGI_10006959; scaffold40346 WUBlastX LINE_L1-Tx1 25241 25453 40 + . . scaffold40346 GLEAN mRNA 23217 29434 0.99961 - . ID=CGI_10004041; scaffold43940 WUBlastX LINE_L1-Tx1 299886 299960 33 - . . scaffold43940 GLEAN mRNA 299103 307092 0.985282 + . ID=CGI_10014161; scaffold43940 WUBlastX LINE_L1-Tx1 300004 300186 47 - . . scaffold43940 GLEAN mRNA 299103 307092 0.985282 + . ID=CGI_10014161; scaffold304 WUBlastX LINE_L1 335427 335600 81 + . . scaffold304 GLEAN mRNA 327782 339627 0.999019 - . ID=CGI_10016567; scaffold4 WUBlastX LINE_L1 435636 435977 36 + . . scaffold4 GLEAN mRNA 420407 460487 0.960328 - . ID=CGI_10021179; scaffold286 WUBlastX DNA_TcMar-Marin 155304 155642 64 + . . scaffold286 GLEAN mRNA 149274 159610 0.543706 - . ID=CGI_10015961; scaffold1726 WUBlastX DNA_P 349452 349547 31 - . . scaffold1726 GLEAN mRNA 346832 358042 0.529003 - . ID=CGI_10015641; scaffold659 WUBlastX DNA_MuDR 92785 93126 61 - . . scaffold659 GLEAN mRNA 92752 93126 0.866674 - . ID=CGI_10014694; scaffold693 WUBlastX LINE_RTE-BovB 10974 11105 54 + . . scaffold693 GLEAN mRNA 1018 11877 0.999949 - . ID=CGI_10000930; scaffold354 WUBlastX LINE_RTE-BovB 697802 697942 27 - . . scaffold354 GLEAN mRNA 684389 702263 0.175247 + . ID=CGI_10025734; scaffold354 WUBlastX LINE_RTE-BovB 697920 698126 24 - . . scaffold354 GLEAN mRNA 684389 702263 0.175247 + . ID=CGI_10025734; scaffold4 WUBlastX LINE_RTE-X 459234 459476 25 + . . scaffold4 GLEAN mRNA 420407 460487 0.960328 - . ID=CGI_10021179; scaffold1442 WUBlastX DNA_MuDR 58284 58499 91 - . . scaffold1442 GLEAN mRNA 57740 58739 1 - . ID=CGI_10003586; scaffold1131 WUBlastX LINE_R2 248210 248434 89 - . . scaffold1131 GLEAN mRNA 246503 250952 0.387708 - . ID=CGI_10013505; scaffold502 WUBlastX LINE_L1-Tx1 73534 73836 23 - . . scaffold502 GLEAN mRNA 66995 88059 0.642831 + . ID=CGI_10024313; scaffold760 WUBlastX LTR_Gypsy 801393 801725 95 - . . scaffold760 GLEAN mRNA 798582 806606 0.999169 - . ID=CGI_10024013; scaffold1159 WUBlastX LINE_L2 160930 161028 24 + . . scaffold1159 GLEAN mRNA 140710 162801 0.966335 + . ID=CGI_10007977; scaffold41776 WUBlastX DNA_P 33685 33771 93 + . . scaffold41776 GLEAN mRNA 33685 33867 0.542101 + . ID=CGI_10005630; scaffold42226 WUBlastX LINE_RTE-X 112804 113028 53 + . . scaffold42226 GLEAN mRNA 107394 126585 0.842903 + . ID=CGI_10006364; scaffold42994 WUBlastX LINE_RTE-BovB 5441 5569 64 + . . scaffold42994 GLEAN mRNA 5441 10039 0.836758 + . ID=CGI_10008312; scaffold145 WUBlastX DNA_TcMar-Fot1 649697 650233 39 + . . scaffold145 GLEAN mRNA 640130 678599 0.569648 - . ID=CGI_10026560; scaffold40216 WUBlastX LTR_Gypsy 20987 21220 58 - . . scaffold40216 GLEAN mRNA 20957 23593 0.998157 - . ID=CGI_10003965; scaffold443 WUBlastX LTR_Gypsy 710054 710524 50 - . . scaffold443 GLEAN mRNA 709931 711618 0.889836 - . ID=CGI_10022786; scaffold1179 WUBlastX DNA_Harbinger 443994 444206 91 + . . scaffold1179 GLEAN mRNA 437414 446157 0.999948 - . ID=CGI_10027365; scaffold517 WUBlastX LINE_L1-Tx1 201127 201213 22 - . . scaffold517 GLEAN mRNA 188444 202746 0.541804 + . ID=CGI_10008984; scaffold986 WUBlastX DNA_TcMar-Tc1 52551 52802 76 - . . scaffold986 GLEAN mRNA 30562 55582 0.15443 + . ID=CGI_10009957; scaffold22 WUBlastX DNA_TcMar-Marin 90386 90583 63 + . . scaffold22 GLEAN mRNA 89502 123774 0.856288 - . ID=CGI_10028828; scaffold1188 WUBlastX LINE_Penelope 216610 216774 71 + . . scaffold1188 GLEAN mRNA 212895 226684 0.80625 + . ID=CGI_10025463; scaffold1634 WUBlastX DNA_TcMar-Fot1 91651 91839 44 - . . scaffold1634 GLEAN mRNA 89739 98250 0.998588 + . ID=CGI_10005153; scaffold1017 WUBlastX LINE_RTE-X 58627 58827 85 - . . scaffold1017 GLEAN mRNA 46180 63837 0.999676 - . ID=CGI_10024980; scaffold709 WUBlastX LINE_RTE-X 315030 315245 35 + . . scaffold709 GLEAN mRNA 310064 322384 0.999026 + . ID=CGI_10020089; scaffold305 WUBlastX LINE_RTE-X 257508 257939 49 + . . scaffold305 GLEAN mRNA 250174 258948 0.912097 + . ID=CGI_10019124; scaffold290 WUBlastX LINE_RTE-X 187506 188252 61 + . . scaffold290 GLEAN mRNA 184166 208505 0.688957 - . ID=CGI_10018539; scaffold1154 WUBlastX DNA_MuDR 401284 401529 67 - . . scaffold1154 GLEAN mRNA 400669 406858 0.774692 - . ID=CGI_10026168; scaffold43522 WUBlastX LINE_RTE-X 92707 92922 77 + . . scaffold43522 GLEAN mRNA 83396 104526 0.999468 + . ID=CGI_10010551; scaffold243 WUBlastX DNA_hAT-Tip100 44457 44495 20 + . . scaffold243 GLEAN mRNA 30219 44504 0.996041 + . ID=CGI_10006813; scaffold86 WUBlastX LTR_Pao 1500475 1501197 41 - . . scaffold86 GLEAN mRNA 1500373 1502880 0.568677 - . ID=CGI_10028217; scaffold885 WUBlastX LINE_RTE-BovB 503573 503725 73 + . . scaffold885 GLEAN mRNA 501162 507823 1 + . ID=CGI_10025210; scaffold1143 WUBlastX DNA_IS4EU 123305 124111 70 - . . scaffold1143 GLEAN mRNA 121955 124624 0.796524 - . ID=CGI_10009141; scaffold1651 WUBlastX DNA_Kolobok-IS4 73961 74479 94 - . . scaffold1651 GLEAN mRNA 73958 74515 0.997685 - . ID=CGI_10007889; scaffold40828 WUBlastX LTR_Gypsy 56881 57060 55 - . . scaffold40828 GLEAN mRNA 28348 61048 0.605765 + . ID=CGI_10004502; scaffold633 WUBlastX LINE_Penelope 54078 54476 43 - . . scaffold633 GLEAN mRNA 49171 62840 0.82948 + . ID=CGI_10004269; scaffold935 WUBlastX DNA_TcMar-Tc2 8095 8298 100 + . . scaffold935 GLEAN mRNA 8095 8319 0.998439 + . ID=CGI_10005288; scaffold504 WUBlastX LINE_L1 254276 254449 23 - . . scaffold504 GLEAN mRNA 245472 293737 0.367349 + . ID=CGI_10016028; scaffold37148 WUBlastX LINE_RTE-BovB 10988 11209 41 + . . scaffold37148 GLEAN mRNA 9385 30637 0.645987 - . ID=CGI_10002291; scaffold305 WUBlastX LINE_RTE-X 257508 257867 75 + . . scaffold305 GLEAN mRNA 250174 258948 0.912097 + . ID=CGI_10019124; scaffold42070 WUBlastX LINE_L1 67705 68070 70 - . . scaffold42070 GLEAN mRNA 63527 73059 0.466285 + . ID=CGI_10006078; scaffold419 WUBlastX LINE_CR1 1269985 1270104 94 - . . scaffold419 GLEAN mRNA 1266298 1276946 0.922495 + . ID=CGI_10028402; scaffold36202 WUBlastX LTR_Ngaro 20512 20757 26 - . . scaffold36202 GLEAN mRNA 3245 23503 0.999232 + . ID=CGI_10001812; scaffold42 WUBlastX LINE_L2 205236 205343 37 + . . scaffold42 GLEAN mRNA 204584 223955 0.545569 + . ID=CGI_10018912; scaffold177 WUBlastX DNA_Harbinger 284880 285107 60 - . . scaffold177 GLEAN mRNA 240974 299351 0.498178 - . ID=CGI_10016064; scaffold177 WUBlastX DNA_Harbinger 285109 285282 42 - . . scaffold177 GLEAN mRNA 240974 299351 0.498178 - . ID=CGI_10016064; scaffold775 WUBlastX DNA_Kolobok-Hyd 115529 116176 49 - . . scaffold775 GLEAN mRNA 115517 116176 0.999137 - . ID=CGI_10006091; scaffold655 WUBlastX LINE_RTE-BovB 311920 312471 24 - . . scaffold655 GLEAN mRNA 288551 322246 0.783926 + . ID=CGI_10014958; scaffold693 WUBlastX LINE_RTE-BovB 10046 10360 21 + . . scaffold693 GLEAN mRNA 1018 11877 0.999949 - . ID=CGI_10000930; C31366 WUBlastX LINE_L1-Tx1 5311 5661 65 + . . C31366 GLEAN mRNA 393 6299 0.999547 - . ID=CGI_10000739; scaffold469 WUBlastX LINE_L2 827262 827612 30 - . . scaffold469 GLEAN mRNA 824216 847987 1 - . ID=CGI_10024698; scaffold547 WUBlastX LTR_Ngaro 429638 429799 52 + . . scaffold547 GLEAN mRNA 419498 445830 0.497938 - . ID=CGI_10018857; scaffold38306 WUBlastX DNA_Harbinger 8854 9009 100 - . . scaffold38306 GLEAN mRNA 6272 12349 0.99842 - . ID=CGI_10002711; scaffold499 WUBlastX LINE_Proto2 101065 101967 82 - . . scaffold499 GLEAN mRNA 88831 107103 0.615404 + . ID=CGI_10015763; scaffold43054 WUBlastX LINE_RTE-X 70889 71248 65 - . . scaffold43054 GLEAN mRNA 69561 76829 0.990615 + . ID=CGI_10008597; scaffold1863 WUBlastX LINE_RTE-X 309022 309237 105 + . . scaffold1863 GLEAN mRNA 292710 321956 0.398552 - . ID=CGI_10016693; scaffold481 WUBlastX LINE_RTE-X 1217188 1217259 20 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold976 WUBlastX LINE_L2 117952 118179 24 + . . scaffold976 GLEAN mRNA 100649 120076 0.999949 + . ID=CGI_10014006; scaffold459 WUBlastX DNA_TcMar-Marin 137912 138256 40 - . . scaffold459 GLEAN mRNA 130507 139915 0.650578 - . ID=CGI_10018170; scaffold368 WUBlastX DNA_Harbinger 40671 40826 61 - . . scaffold368 GLEAN mRNA 27692 45024 0.754759 - . ID=CGI_10018691; scaffold1172 WUBlastX DNA_Kolobok 136367 136552 85 - . . scaffold1172 GLEAN mRNA 136358 137015 0.533411 - . ID=CGI_10006910; scaffold1172 WUBlastX DNA_Kolobok 136367 136552 85 - . . scaffold1172 GLEAN mRNA 130831 145007 0.99998 + . ID=CGI_10006909; scaffold1259 WUBlastX LINE_L1-Tx1 19306 19485 147 - . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold43804 WUBlastX LINE_L1-Tx1 26414 26716 106 - . . scaffold43804 GLEAN mRNA 23653 37787 0.649698 + . ID=CGI_10012548; scaffold730 WUBlastX LINE_L1-Tx1 371200 371532 48 - . . scaffold730 GLEAN mRNA 359674 389340 0.587782 - . ID=CGI_10019895; scaffold1259 WUBlastX LINE_L1 19306 19641 100 - . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold370 WUBlastX LINE_RTE-X 188534 188659 35 - . . scaffold370 GLEAN mRNA 169419 194648 0.857316 - . ID=CGI_10025527; scaffold524 WUBlastX DNA_Academ 52988 53245 81 - . . scaffold524 GLEAN mRNA 52982 53245 0.999451 - . ID=CGI_10016597; scaffold266 WUBlastX DNA_hAT-Tip100 54621 54842 132 + . . scaffold266 GLEAN mRNA 46310 60131 0.998446 - . ID=CGI_10013346; scaffold252 WUBlastX LINE_L1 194729 194890 66 + . . scaffold252 GLEAN mRNA 193535 212637 0.650781 - . ID=CGI_10010768; scaffold271 WUBlastX LINE_RTE-X 832126 832254 25 - . . scaffold271 GLEAN mRNA 809860 849502 0.997113 - . ID=CGI_10024500; scaffold599 WUBlastX LINE_RTE-X 375396 375824 103 - . . scaffold599 GLEAN mRNA 372668 382241 0.88989 - . ID=CGI_10021718; scaffold35180 WUBlastX LINE_RTE-X 9682 10221 81 + . . scaffold35180 GLEAN mRNA 904 21932 0.992496 - . ID=CGI_10001433; scaffold546 WUBlastX LINE_RTE-X 36454 36750 89 - . . scaffold546 GLEAN mRNA 24963 48088 0.999351 + . ID=CGI_10020990; scaffold1897 WUBlastX LINE_CR1 200054 200644 104 + . . scaffold1897 GLEAN mRNA 190471 249775 0.317357 - . ID=CGI_10020917; scaffold40440 WUBlastX LTR_Gypsy 33644 34804 136 - . . scaffold40440 GLEAN mRNA 16484 36402 0.811713 + . ID=CGI_10004142; scaffold43396 WUBlastX LINE_Penelope 186430 186702 102 + . . scaffold43396 GLEAN mRNA 168401 199028 0.999996 + . ID=CGI_10010150; scaffold43396 WUBlastX LINE_Penelope 186734 186937 22 + . . scaffold43396 GLEAN mRNA 168401 199028 0.999996 + . ID=CGI_10010150; scaffold955 WUBlastX LINE_RTE-BovB 120029 120307 81 - . . scaffold955 GLEAN mRNA 102883 129964 0.99714 + . ID=CGI_10009853; scaffold482 WUBlastX LINE_RTE-X 112751 113431 37 - . . scaffold482 GLEAN mRNA 106791 115709 0.887892 + . ID=CGI_10010996; scaffold569 WUBlastX LINE_L2 153163 153825 149 - . . scaffold569 GLEAN mRNA 133999 168874 0.674144 + . ID=CGI_10009498; scaffold1578 WUBlastX LTR_Pao 65439 65573 21 + . . scaffold1578 GLEAN mRNA 44226 72498 0.998909 - . ID=CGI_10008160; scaffold1578 WUBlastX LTR_Pao 68314 68400 25 + . . scaffold1578 GLEAN mRNA 44226 72498 0.998909 - . ID=CGI_10008160; scaffold40638 WUBlastX LINE_L2 43445 43957 71 + . . scaffold40638 GLEAN mRNA 41609 59545 0.679878 - . ID=CGI_10004286; scaffold126 WUBlastX DNA_Kolobok-IS4 251927 252268 135 - . . scaffold126 GLEAN mRNA 251015 257085 0.999956 + . ID=CGI_10019188; scaffold1024 WUBlastX DNA_PiggyBac 1074662 1074892 133 - . . scaffold1024 GLEAN mRNA 1070619 1077233 0.9551 - . ID=CGI_10028563; scaffold396 WUBlastX LINE_RTE-X 204416 204760 137 + . . scaffold396 GLEAN mRNA 196799 208805 0.948886 - . ID=CGI_10018103; scaffold211 WUBlastX LINE_RTE-X 986558 986971 80 + . . scaffold211 GLEAN mRNA 978840 989319 0.74015 + . ID=CGI_10026972; scaffold1028 WUBlastX LINE_L1-Tx1 63151 63651 76 + . . scaffold1028 GLEAN mRNA 38359 105235 0.597726 - . ID=CGI_10009718; scaffold1315 WUBlastX LINE_L1-Tx1 28179 28421 23 + . . scaffold1315 GLEAN mRNA 24729 31202 0.999612 + . ID=CGI_10021591; scaffold43008 WUBlastX LTR_Gypsy 33463 33588 22 - . . scaffold43008 GLEAN mRNA 18841 33811 0.999674 - . ID=CGI_10008458; scaffold616 WUBlastX LINE_RTE-BovB 314635 315513 338 + . . scaffold616 GLEAN mRNA 306388 329498 0.842956 - . ID=CGI_10015403; scaffold880 WUBlastX LTR_Ngaro 545471 547003 977 - . . scaffold880 GLEAN mRNA 532350 563503 0.438976 - . ID=CGI_10022201; scaffold288 WUBlastX LTR_Pao 168336 169019 68 + . . scaffold288 GLEAN mRNA 165543 215886 0.392804 - . ID=CGI_10020660; scaffold1213 WUBlastX LTR_Ngaro 1134995 1135642 115 - . . scaffold1213 GLEAN mRNA 1112945 1137379 0.247457 - . ID=CGI_10027485; scaffold43146 WUBlastX DNA_IS4EU 104079 104381 77 - . . scaffold43146 GLEAN mRNA 80112 107835 0.644637 + . ID=CGI_10009042; scaffold1032 WUBlastX LINE_RTE-X 567893 568222 121 - . . scaffold1032 GLEAN mRNA 545471 568883 0.969277 - . ID=CGI_10021693; scaffold1032 WUBlastX LINE_RTE-X 567893 568222 121 - . . scaffold1032 GLEAN mRNA 560649 579952 0.932371 + . ID=CGI_10021694; scaffold853 WUBlastX LINE_L2 431669 432679 655 - . . scaffold853 GLEAN mRNA 427674 436320 0.99996 - . ID=CGI_10017516; scaffold1708 WUBlastX LINE_L2 6990 8234 833 - . . scaffold1708 GLEAN mRNA 6391 9576 0.777526 + . ID=CGI_10005574; scaffold753 WUBlastX LINE_L2 53500 53679 47 + . . scaffold753 GLEAN mRNA 36571 68340 0.958809 + . ID=CGI_10014195; scaffold1780 WUBlastX LINE_CR1 110602 110781 32 + . . scaffold1780 GLEAN mRNA 107008 115035 0.543 - . ID=CGI_10014549; scaffold1884 WUBlastX LINE_CR1-L2 143027 143593 49 - . . scaffold1884 GLEAN mRNA 133392 150395 0.998261 + . ID=CGI_10012014; scaffold43660 WUBlastX DNA_Kolobok-IS4 82247 82441 67 + . . scaffold43660 GLEAN mRNA 73296 94423 0.650662 - . ID=CGI_10011661; scaffold1532 WUBlastX DNA_Kolobok 586778 587047 76 - . . scaffold1532 GLEAN mRNA 577371 590809 0.942324 - . ID=CGI_10028257; scaffold632 WUBlastX LINE_CR1-L2 510186 511268 589 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold41560 WUBlastX LINE_L2 86036 86413 112 - . . scaffold41560 GLEAN mRNA 83554 88131 1 - . ID=CGI_10005282; scaffold610 WUBlastX DNA_Merlin 571719 571913 33 + . . scaffold610 GLEAN mRNA 570530 599736 0.974441 - . ID=CGI_10021131; scaffold510 WUBlastX LTR_Ngaro 171524 172513 124 - . . scaffold510 GLEAN mRNA 163291 175111 0.785549 + . ID=CGI_10013769; scaffold382 WUBlastX DNA_Kolobok-IS4 42766 43545 104 - . . scaffold382 GLEAN mRNA 40511 73048 0.0752347 + . ID=CGI_10004503; scaffold178 WUBlastX LINE_Penelope 103887 104150 72 - . . scaffold178 GLEAN mRNA 95706 112577 0.461285 - . ID=CGI_10004828; scaffold42840 WUBlastX LINE_RTE-X 62469 63494 437 - . . scaffold42840 GLEAN mRNA 60597 70020 0.754681 + . ID=CGI_10007833; scaffold42840 WUBlastX LINE_RTE-X 63487 64734 644 - . . scaffold42840 GLEAN mRNA 60597 70020 0.754681 + . ID=CGI_10007833; scaffold162 WUBlastX LTR_Gypsy 271251 271403 63 - . . scaffold162 GLEAN mRNA 254328 277132 0.643433 - . ID=CGI_10014094; scaffold1480 WUBlastX LINE_R2 157646 159403 898 - . . scaffold1480 GLEAN mRNA 145751 160551 0.693127 - . ID=CGI_10008638; scaffold1703 WUBlastX LINE_L1-Tx1 466865 467620 149 + . . scaffold1703 GLEAN mRNA 460683 476446 0.999324 - . ID=CGI_10023062; scaffold531 WUBlastX DNA_Academ 26356 26691 61 - . . scaffold531 GLEAN mRNA 22748 29196 0.526203 - . ID=CGI_10014486; scaffold41660 WUBlastX LINE_L1 113199 113663 53 - . . scaffold41660 GLEAN mRNA 108736 121603 0.999676 + . ID=CGI_10005401; scaffold41650 WUBlastX LINE_CR1 3940 4992 139 - . . scaffold41650 GLEAN mRNA 2732 34982 0.998592 + . ID=CGI_10005337; scaffold42648 WUBlastX LTR_Pao 172245 172892 263 - . . scaffold42648 GLEAN mRNA 167771 174774 0.98388 - . ID=CGI_10007395; scaffold664 WUBlastX LTR_Pao 650761 652842 1367 + . . scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold40638 WUBlastX DNA_En-Spm 55324 56133 166 - . . scaffold40638 GLEAN mRNA 41609 59545 0.679878 - . ID=CGI_10004286; scaffold510 WUBlastX LTR_DIRS 355060 355503 170 - . . scaffold510 GLEAN mRNA 352980 361330 0.999948 - . ID=CGI_10013775; scaffold37148 WUBlastX DNA_Harbinger 16185 16589 187 - . . scaffold37148 GLEAN mRNA 9385 30637 0.645987 - . ID=CGI_10002291; scaffold1831 WUBlastX LINE_RTE-BovB 1455 1676 25 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold469 WUBlastX LTR_Pao 151307 152074 694 - . . scaffold469 GLEAN mRNA 146084 157322 0.988922 - . ID=CGI_10024669; scaffold1785 WUBlastX LINE_CR1 22157 22786 103 + . . scaffold1785 GLEAN mRNA 6322 29997 0.294917 - . ID=CGI_10024349; scaffold41684 WUBlastX LTR_Ngaro 43197 43571 82 + . . scaffold41684 GLEAN mRNA 27935 49740 0.93781 - . ID=CGI_10005434; scaffold1188 WUBlastX LTR_Gypsy-Cigr 170978 172444 596 - . . scaffold1188 GLEAN mRNA 159311 176924 0.555609 - . ID=CGI_10025460; scaffold41684 WUBlastX LTR_Ngaro 42556 43146 54 + . . scaffold41684 GLEAN mRNA 27935 49740 0.93781 - . ID=CGI_10005434; scaffold1188 WUBlastX LTR_Gypsy-Cigr 171257 173533 1084 - . . scaffold1188 GLEAN mRNA 159311 176924 0.555609 - . ID=CGI_10025460; scaffold1188 WUBlastX LTR_Gypsy-Cigr 173484 173930 432 - . . scaffold1188 GLEAN mRNA 159311 176924 0.555609 - . ID=CGI_10025460; scaffold204 WUBlastX LINE_L1-Tx1 427844 431401 1118 - . . scaffold204 GLEAN mRNA 420205 431489 0.478476 - . ID=CGI_10026107; scaffold1189 WUBlastX LINE_RTE-X 774029 774130 46 - . . scaffold1189 GLEAN mRNA 763568 774596 0.392072 + . ID=CGI_10023832; scaffold58 WUBlastX LTR_Gypsy-Cigr 566947 567576 108 - . . scaffold58 GLEAN mRNA 565797 572122 0.982335 - . ID=CGI_10023152; scaffold58 WUBlastX LTR_Gypsy-Cigr 566947 567576 108 - . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; scaffold37430 WUBlastX LTR_Pao 40634 41521 214 - . . scaffold37430 GLEAN mRNA 25525 41907 0.539363 + . ID=CGI_10002358; scaffold733 WUBlastX LINE_L1-Tx1 888887 889363 107 - . . scaffold733 GLEAN mRNA 864535 893177 0.998838 + . ID=CGI_10025893; scaffold86 WUBlastX DNA_Kolobok 151157 151348 47 - . . scaffold86 GLEAN mRNA 141744 153852 0.999675 - . ID=CGI_10028139; scaffold733 WUBlastX LINE_L1-Tx1 888875 889522 68 - . . scaffold733 GLEAN mRNA 864535 893177 0.998838 + . ID=CGI_10025893; scaffold469 WUBlastX LTR_Pao 622979 623332 144 + . . scaffold469 GLEAN mRNA 620008 639653 0.99956 + . ID=CGI_10024690; scaffold469 WUBlastX LTR_Pao 623338 623568 126 + . . scaffold469 GLEAN mRNA 620008 639653 0.99956 + . ID=CGI_10024690; scaffold760 WUBlastX LINE_L1-Tx1 127785 130661 1616 + . . scaffold760 GLEAN mRNA 117770 147032 0.706686 + . ID=CGI_10023976; scaffold37430 WUBlastX LTR_Pao 38217 38474 229 - . . scaffold37430 GLEAN mRNA 25525 41907 0.539363 + . ID=CGI_10002358; scaffold683 WUBlastX LINE_RTE-X 84284 84376 42 - . . scaffold683 GLEAN mRNA 80657 98109 0.999674 + . ID=CGI_10010356; scaffold38854 WUBlastX LINE_L1-Tx1 18573 18755 61 + . . scaffold38854 GLEAN mRNA 17499 20462 0.835209 + . ID=CGI_10003011; scaffold626 WUBlastX DNA_hAT 189711 189911 59 + . . scaffold626 GLEAN mRNA 185398 190939 0.996819 + . ID=CGI_10019986; scaffold368 WUBlastX DNA_IS4EU 89322 90167 149 + . . scaffold368 GLEAN mRNA 78208 92005 0.999415 - . ID=CGI_10018696; scaffold610 WUBlastX LTR_Gypsy 583545 583982 118 - . . scaffold610 GLEAN mRNA 570530 599736 0.974441 - . ID=CGI_10021131; scaffold447 WUBlastX LINE_RTE-BovB 335448 335516 40 - . . scaffold447 GLEAN mRNA 332382 354643 0.998297 + . ID=CGI_10014233; scaffold447 WUBlastX LINE_RTE-BovB 335522 335719 100 - . . scaffold447 GLEAN mRNA 332382 354643 0.998297 + . ID=CGI_10014233; scaffold447 WUBlastX LINE_RTE-BovB 335710 335952 247 - . . scaffold447 GLEAN mRNA 332382 354643 0.998297 + . ID=CGI_10014233; scaffold447 WUBlastX LINE_RTE-BovB 335952 336188 281 - . . scaffold447 GLEAN mRNA 332382 354643 0.998297 + . ID=CGI_10014233; scaffold447 WUBlastX LINE_RTE-BovB 336200 337837 1477 - . . scaffold447 GLEAN mRNA 332382 354643 0.998297 + . ID=CGI_10014233; scaffold39470 WUBlastX LINE_CR1 44219 47458 2057 + . . scaffold39470 GLEAN mRNA 37603 51823 0.681651 + . ID=CGI_10003380; scaffold784 WUBlastX LINE_RTE-BovB 303364 303600 276 + . . scaffold784 GLEAN mRNA 298825 308897 0.999951 - . ID=CGI_10024422; scaffold22 WUBlastX LINE_L1-Tx1 1082672 1082869 103 + . . scaffold22 GLEAN mRNA 1079633 1088835 0.644932 - . ID=CGI_10028896; scaffold1335 WUBlastX LINE_Penelope 12438 12554 32 - . . scaffold1335 GLEAN mRNA 497 21134 0.65089 + . ID=CGI_10001395; scaffold90 WUBlastX DNA_hAT-Ac 339214 339474 78 - . . scaffold90 GLEAN mRNA 319674 344915 0.945886 + . ID=CGI_10015172; scaffold149 WUBlastX DNA_hAT 176516 177865 286 + . . scaffold149 GLEAN mRNA 176447 178183 0.998924 + . ID=CGI_10025294; scaffold1222 WUBlastX LINE_CR1-L2 195533 196501 224 - . . scaffold1222 GLEAN mRNA 181889 211274 0.999614 - . ID=CGI_10016240; scaffold406 WUBlastX LTR_Gypsy 64012 64128 42 - . . scaffold406 GLEAN mRNA 63105 78647 0.760341 - . ID=CGI_10023839; scaffold1792 WUBlastX LINE_L2 260047 261450 235 + . . scaffold1792 GLEAN mRNA 252899 271519 0.999949 - . ID=CGI_10012749; scaffold59 WUBlastX RC_Helitron 238536 239303 263 + . . scaffold59 GLEAN mRNA 230821 243525 0.988711 - . ID=CGI_10011278; scaffold101 WUBlastX DNA_MuDR 677388 677987 191 + . . scaffold101 GLEAN mRNA 676539 710927 0.888019 - . ID=CGI_10021653; C36680 WUBlastX LINE_CR1 8507 8938 51 - . . C36680 GLEAN mRNA 2216 22548 0.727902 - . ID=CGI_10002070; scaffold1213 WUBlastX LTR_Ngaro 1132330 1133034 223 - . . scaffold1213 GLEAN mRNA 1112945 1137379 0.247457 - . ID=CGI_10027485; scaffold1210 WUBlastX LINE_CR1 223162 223240 27 - . . scaffold1210 GLEAN mRNA 223162 227015 0.996444 + . ID=CGI_10014606; scaffold43446 WUBlastX LINE_CR1 200177 201655 132 + . . scaffold43446 GLEAN mRNA 175111 204349 0.996568 - . ID=CGI_10010404; scaffold632 WUBlastX LINE_L2 512617 512727 48 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold43122 WUBlastX LTR_DIRS 145429 145917 268 + . . scaffold43122 GLEAN mRNA 115837 148634 0.68095 - . ID=CGI_10008940; scaffold1334 WUBlastX LINE_Penelope 7620 9077 231 + . . scaffold1334 GLEAN mRNA 1383 27081 0.666269 - . ID=CGI_10003403; scaffold1352 WUBlastX LINE_RTE-X 404175 404543 114 + . . scaffold1352 GLEAN mRNA 400458 408667 0.333165 + . ID=CGI_10018425; scaffold42674 WUBlastX LINE_L1-Tx1 88754 89440 319 + . . scaffold42674 GLEAN mRNA 75951 89776 0.488756 + . ID=CGI_10007441; scaffold274 WUBlastX LTR_Gypsy 120615 121142 199 - . . scaffold274 GLEAN mRNA 114872 127603 0.900499 - . ID=CGI_10017014; scaffold274 WUBlastX LTR_Gypsy 120615 121142 199 - . . scaffold274 GLEAN mRNA 110645 138083 0.999675 + . ID=CGI_10017013; scaffold350 WUBlastX DNA_Academ 1816 2337 89 - . . scaffold350 GLEAN mRNA 1105 3206 0.996578 - . ID=CGI_10000780; scaffold1221 WUBlastX LINE_L1-Tx1 390349 390708 163 + . . scaffold1221 GLEAN mRNA 352551 403939 0.753368 - . ID=CGI_10019745; scaffold1221 WUBlastX LINE_L1-Tx1 390749 391723 85 + . . scaffold1221 GLEAN mRNA 352551 403939 0.753368 - . ID=CGI_10019745; scaffold550 WUBlastX DNA_Helitron 150305 151396 175 - . . scaffold550 GLEAN mRNA 134556 152020 0.969581 - . ID=CGI_10012490; scaffold847 WUBlastX RC_Helitron 439398 439457 20 - . . scaffold847 GLEAN mRNA 435807 447835 0.572478 + . ID=CGI_10022278; scaffold42210 WUBlastX LINE_L1-Tx1 101065 101865 254 + . . scaffold42210 GLEAN mRNA 98005 111760 0.591926 + . ID=CGI_10006389; scaffold1050 WUBlastX DNA_hAT 216944 217096 40 + . . scaffold1050 GLEAN mRNA 214951 218048 0.349007 + . ID=CGI_10009182; scaffold22 WUBlastX DNA_Merlin 168185 169081 353 + . . scaffold22 GLEAN mRNA 157108 183005 0.71876 + . ID=CGI_10028831; scaffold616 WUBlastX LINE_RTE-BovB 314416 315192 190 + . . scaffold616 GLEAN mRNA 306388 329498 0.842956 - . ID=CGI_10015403; scaffold40836 WUBlastX LINE_RTE-X 83613 83753 26 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold1345 WUBlastX LTR_Gypsy 240260 240661 205 - . . scaffold1345 GLEAN mRNA 239892 251479 1 - . ID=CGI_10016283; scaffold1345 WUBlastX LTR_Gypsy 241500 241607 77 - . . scaffold1345 GLEAN mRNA 239892 251479 1 - . ID=CGI_10016283; scaffold1715 WUBlastX LINE_Penelope 328038 328265 36 + . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold772 WUBlastX LTR_Ngaro 339718 340446 279 + . . scaffold772 GLEAN mRNA 336765 344045 0.544674 + . ID=CGI_10016594; scaffold721 WUBlastX LINE_L2 84015 84410 191 + . . scaffold721 GLEAN mRNA 68079 89248 0.992034 + . ID=CGI_10021995; scaffold1844 WUBlastX LINE_RTE-X 125702 125800 56 + . . scaffold1844 GLEAN mRNA 108283 134853 0.924542 + . ID=CGI_10006619; scaffold1174 WUBlastX LINE_L1-Tx1 170169 170567 145 + . . scaffold1174 GLEAN mRNA 165948 193006 0.453368 - . ID=CGI_10026029; scaffold288 WUBlastX LINE_L1-Tx1 209031 209609 375 - . . scaffold288 GLEAN mRNA 165543 215886 0.392804 - . ID=CGI_10020660; scaffold43964 WUBlastX DNA_hAT 129296 129478 537 + . . scaffold43964 GLEAN mRNA 129296 131440 1 + . ID=CGI_10014642; scaffold1838 WUBlastX LINE_RTE-X 335735 336367 187 - . . scaffold1838 GLEAN mRNA 332958 349598 0.563165 + . ID=CGI_10014264; scaffold19 WUBlastX LTR_DIRS 198999 199436 41 + . . scaffold19 GLEAN mRNA 192266 206861 0.651568 + . ID=CGI_10010840; scaffold43708 WUBlastX LINE_CR1-L2 237017 237760 293 - . . scaffold43708 GLEAN mRNA 223509 253864 0.998643 + . ID=CGI_10011974; scaffold550 WUBlastX DNA_Harbinger 54909 55277 248 - . . scaffold550 GLEAN mRNA 42295 70110 0.723644 + . ID=CGI_10012483; scaffold550 WUBlastX DNA_Harbinger 56495 56614 133 - . . scaffold550 GLEAN mRNA 42295 70110 0.723644 + . ID=CGI_10012483; scaffold550 WUBlastX DNA_Harbinger 57209 57577 119 - . . scaffold550 GLEAN mRNA 42295 70110 0.723644 + . ID=CGI_10012483; scaffold38510 WUBlastX DNA_Sola 31148 31480 120 + . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold236 WUBlastX DNA_Kolobok 229601 230119 272 + . . scaffold236 GLEAN mRNA 229568 231611 1 + . ID=CGI_10018139; scaffold236 WUBlastX DNA_Kolobok 230235 230435 127 + . . scaffold236 GLEAN mRNA 229568 231611 1 + . ID=CGI_10018139; scaffold236 WUBlastX DNA_Kolobok 230515 230892 88 + . . scaffold236 GLEAN mRNA 229568 231611 1 + . ID=CGI_10018139; scaffold236 WUBlastX DNA_Kolobok 231169 231339 115 + . . scaffold236 GLEAN mRNA 229568 231611 1 + . ID=CGI_10018139; scaffold469 WUBlastX LTR_Pao 623577 624167 124 + . . scaffold469 GLEAN mRNA 620008 639653 0.99956 + . ID=CGI_10024690; scaffold338 WUBlastX LINE_L2 51525 51881 88 - . . scaffold338 GLEAN mRNA 47890 56497 0.70241 + . ID=CGI_10011184; scaffold338 WUBlastX LINE_L2 51845 52501 375 - . . scaffold338 GLEAN mRNA 47890 56497 0.70241 + . ID=CGI_10011184; scaffold338 WUBlastX LINE_L2 52519 52773 84 - . . scaffold338 GLEAN mRNA 47890 56497 0.70241 + . ID=CGI_10011184; scaffold43868 WUBlastX DNA_hAT 16516 16734 93 + . . scaffold43868 GLEAN mRNA 12276 17376 0.993028 - . ID=CGI_10013648; scaffold43868 WUBlastX DNA_hAT 16516 16734 93 + . . scaffold43868 GLEAN mRNA 14140 17333 1 + . ID=CGI_10013649; scaffold43868 WUBlastX DNA_hAT 14621 15031 109 + . . scaffold43868 GLEAN mRNA 12276 17376 0.993028 - . ID=CGI_10013648; scaffold43868 WUBlastX DNA_hAT 14621 15031 109 + . . scaffold43868 GLEAN mRNA 14140 17333 1 + . ID=CGI_10013649; scaffold43868 WUBlastX DNA_hAT 15414 15590 100 + . . scaffold43868 GLEAN mRNA 12276 17376 0.993028 - . ID=CGI_10013648; scaffold43868 WUBlastX DNA_hAT 15414 15590 100 + . . scaffold43868 GLEAN mRNA 14140 17333 1 + . ID=CGI_10013649; scaffold38464 WUBlastX LTR_Ngaro 30697 31179 224 - . . scaffold38464 GLEAN mRNA 29156 32869 1 - . ID=CGI_10002793; scaffold36 WUBlastX LTR_Gypsy 2924 3160 49 + . . scaffold36 GLEAN mRNA 2519 8438 0.614104 + . ID=CGI_10001028; scaffold43786 WUBlastX LINE_L1-Tx1 249436 250491 368 - . . scaffold43786 GLEAN mRNA 234476 275282 0.999342 - . ID=CGI_10012356; scaffold610 WUBlastX LTR_Gypsy-Cigr 568220 568705 39 + . . scaffold610 GLEAN mRNA 561259 570035 0.686247 - . ID=CGI_10021130; scaffold610 WUBlastX LTR_Gypsy-Cigr 568894 569202 183 + . . scaffold610 GLEAN mRNA 561259 570035 0.686247 - . ID=CGI_10021130; scaffold610 WUBlastX LTR_Gypsy-Cigr 569350 569517 30 + . . scaffold610 GLEAN mRNA 561259 570035 0.686247 - . ID=CGI_10021130; scaffold1036 WUBlastX LINE_L1-Tx1 243924 243995 23 - . . scaffold1036 GLEAN mRNA 228869 245204 0.994909 + . ID=CGI_10019957; scaffold1806 WUBlastX LTR_Gypsy 53072 54319 207 - . . scaffold1806 GLEAN mRNA 45331 76950 0.994674 + . ID=CGI_10006156; scaffold305 WUBlastX LINE_L1-Tx1 464703 465023 134 - . . scaffold305 GLEAN mRNA 449845 466663 0.999234 + . ID=CGI_10019141; scaffold305 WUBlastX LINE_L1-Tx1 464990 466078 520 - . . scaffold305 GLEAN mRNA 449845 466663 0.999234 + . ID=CGI_10019141; scaffold6 WUBlastX LINE_L1-Tx1 189389 189721 53 + . . scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; scaffold1774 WUBlastX DNA_Kolobok 47754 47813 25 + . . scaffold1774 GLEAN mRNA 36391 50061 0.563353 + . ID=CGI_10006376; scaffold1774 WUBlastX DNA_Kolobok 49027 49986 578 + . . scaffold1774 GLEAN mRNA 36391 50061 0.563353 + . ID=CGI_10006376; scaffold57 WUBlastX LINE_RTE-X 378097 379374 475 - . . scaffold57 GLEAN mRNA 361110 382565 0.943475 + . ID=CGI_10020552; scaffold57 WUBlastX LINE_RTE-X 378097 379374 475 - . . scaffold57 GLEAN mRNA 361168 396087 0.322076 - . ID=CGI_10020553; scaffold57 WUBlastX LINE_RTE-X 379406 379696 221 - . . scaffold57 GLEAN mRNA 361110 382565 0.943475 + . ID=CGI_10020552; scaffold57 WUBlastX LINE_RTE-X 379406 379696 221 - . . scaffold57 GLEAN mRNA 361168 396087 0.322076 - . ID=CGI_10020553; scaffold6 WUBlastX LINE_CR1-L2 673294 673617 59 - . . scaffold6 GLEAN mRNA 669450 677435 1 + . ID=CGI_10022331; scaffold70 WUBlastX LINE_L2 611888 612049 28 + . . scaffold70 GLEAN mRNA 605933 624830 0.814164 - . ID=CGI_10024778; C35952 WUBlastX LINE_L2 3484 3567 20 + . . C35952 GLEAN mRNA 195 8083 0.544487 + . ID=CGI_10001669; scaffold102 WUBlastX DNA_hAT-Ac 1538400 1538654 70 - . . scaffold102 GLEAN mRNA 1532525 1541174 0.3501 - . ID=CGI_10028505; scaffold911 WUBlastX LTR_Gypsy 96907 97101 57 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold986 WUBlastX DNA_Harbinger 137804 137941 20 - . . scaffold986 GLEAN mRNA 135296 141072 0.877811 + . ID=CGI_10009960; scaffold42770 WUBlastX LINE_L1-Tx1 25983 26174 92 - . . scaffold42770 GLEAN mRNA 14131 34729 0.562742 - . ID=CGI_10007687; scaffold1459 WUBlastX LINE_L1 10230 10505 42 + . . scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; scaffold276 WUBlastX DNA_P 29613 29945 42 - . . scaffold276 GLEAN mRNA 27405 34935 0.425332 - . ID=CGI_10006435; scaffold559 WUBlastX DNA_P 36254 36721 46 + . . scaffold559 GLEAN mRNA 36227 37772 1 + . ID=CGI_10003340; scaffold149 WUBlastX DNA_TcMar-Marin 1037202 1037396 25 - . . scaffold149 GLEAN mRNA 1029286 1055668 0.813477 - . ID=CGI_10025339; scaffold1132 WUBlastX LINE_L1-Tx1 423805 423987 27 + . . scaffold1132 GLEAN mRNA 413110 426704 0.743295 - . ID=CGI_10023318; scaffold42 WUBlastX LINE_CR1 205233 205313 46 + . . scaffold42 GLEAN mRNA 204584 223955 0.545569 + . ID=CGI_10018912; scaffold37472 WUBlastX LINE_CR1 29693 29724 36 + . . scaffold37472 GLEAN mRNA 1629 29724 0.999786 + . ID=CGI_10002390; scaffold140 WUBlastX LINE_CR1 365892 366533 53 - . . scaffold140 GLEAN mRNA 344940 369951 0.671174 - . ID=CGI_10020136; scaffold160 WUBlastX LTR_Pao 319662 319751 20 - . . scaffold160 GLEAN mRNA 319475 320748 0.628364 - . ID=CGI_10020588; scaffold36390 WUBlastX LTR_Gypsy 5323 5811 78 + . . scaffold36390 GLEAN mRNA 5206 5853 0.999984 + . ID=CGI_10001879; scaffold301 WUBlastX LTR_Gypsy 1141876 1142112 47 - . . scaffold301 GLEAN mRNA 1141876 1142190 0.998748 - . ID=CGI_10026747; scaffold459 WUBlastX LTR_Gypsy 364617 364622 52 - . . scaffold459 GLEAN mRNA 364047 364622 0.990874 - . ID=CGI_10018183; scaffold43818 WUBlastX LTR_Gypsy 321605 322156 52 + . . scaffold43818 GLEAN mRNA 318880 322672 0.37766 + . ID=CGI_10012777; scaffold547 WUBlastX LTR_Ngaro 430314 430430 36 + . . scaffold547 GLEAN mRNA 419498 445830 0.497938 - . ID=CGI_10018857; scaffold1423 WUBlastX LINE_Jockey 713796 714317 64 + . . scaffold1423 GLEAN mRNA 702823 732700 0.440207 - . ID=CGI_10025438; scaffold450 WUBlastX LTR_Gypsy 79714 79764 21 - . . scaffold450 GLEAN mRNA 66067 80656 0.505252 - . ID=CGI_10010319; scaffold1680 WUBlastX LTR_Gypsy 69575 70492 62 + . . scaffold1680 GLEAN mRNA 60137 87573 0.648461 - . ID=CGI_10004140; scaffold67 WUBlastX DNA_IS4EU 90147 90341 40 - . . scaffold67 GLEAN mRNA 72770 90591 0.702383 - . ID=CGI_10018264; scaffold1687 WUBlastX DNA_IS4EU 175921 176232 33 + . . scaffold1687 GLEAN mRNA 175921 180780 0.898283 + . ID=CGI_10008394; scaffold599 WUBlastX DNA_IS4EU 464556 464714 31 + . . scaffold599 GLEAN mRNA 453980 472237 0.999985 - . ID=CGI_10021725; scaffold599 WUBlastX DNA_IS4EU 464556 464714 31 + . . scaffold599 GLEAN mRNA 456252 477114 0.953927 + . ID=CGI_10021726; scaffold76 WUBlastX LINE_RTE-X 227718 227921 52 + . . scaffold76 GLEAN mRNA 221391 229684 0.999675 - . ID=CGI_10009406; scaffold535 WUBlastX DNA_TcMar-Tc1 116665 116853 42 + . . scaffold535 GLEAN mRNA 111373 154699 0.592399 + . ID=CGI_10020283; scaffold751 WUBlastX LINE_L2 411538 411768 54 + . . scaffold751 GLEAN mRNA 408046 415763 1 - . ID=CGI_10017403; scaffold678 WUBlastX LTR_Gypsy 394092 394105 33 + . . scaffold678 GLEAN mRNA 394092 404361 1 + . ID=CGI_10026356; scaffold602 WUBlastX LTR_Gypsy 793975 794142 59 + . . scaffold602 GLEAN mRNA 781902 798568 0.814164 + . ID=CGI_10023204; scaffold43210 WUBlastX LINE_RTE-BovB 183870 184007 70 - . . scaffold43210 GLEAN mRNA 171001 198787 0.693179 - . ID=CGI_10009448; scaffold1512 WUBlastX LINE_RTE-BovB 499737 499794 76 + . . scaffold1512 GLEAN mRNA 495502 499794 0.641037 - . ID=CGI_10019873; scaffold41598 WUBlastX DNA_PiggyBac 66159 66413 104 - . . scaffold41598 GLEAN mRNA 59426 74794 0.449575 - . ID=CGI_10005304; scaffold591 WUBlastX DNA_PiggyBac 725353 725418 27 + . . scaffold591 GLEAN mRNA 721166 806574 0.987378 - . ID=CGI_10027581; scaffold321 WUBlastX LINE_RTE-X 477640 477825 64 - . . scaffold321 GLEAN mRNA 474717 485753 0.439448 - . ID=CGI_10020812; scaffold57 WUBlastX DNA_En-Spm 3801 4085 20 + . . scaffold57 GLEAN mRNA 3208 18413 0.810616 + . ID=CGI_10020530; scaffold42584 WUBlastX LINE_CR1 100564 100701 93 + . . scaffold42584 GLEAN mRNA 87388 105090 0.998677 + . ID=CGI_10007309; scaffold1138 WUBlastX LINE_CR1 185523 185879 70 + . . scaffold1138 GLEAN mRNA 183755 192154 0.999676 - . ID=CGI_10015373; scaffold1750 WUBlastX DNA_hAT 232757 232900 26 + . . scaffold1750 GLEAN mRNA 229777 232957 1 + . ID=CGI_10021476; scaffold1750 WUBlastX DNA_hAT 232757 232900 26 + . . scaffold1750 GLEAN mRNA 227209 235623 0.823116 - . ID=CGI_10021475; scaffold1066 WUBlastX LTR_Gypsy 169024 169806 70 + . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold496 WUBlastX LTR_Ngaro 285454 285987 60 + . . scaffold496 GLEAN mRNA 284554 289142 0.934292 + . ID=CGI_10022451; scaffold43150 WUBlastX LINE_L1 132133 132936 43 + . . scaffold43150 GLEAN mRNA 121679 138901 1 + . ID=CGI_10009035; scaffold816 WUBlastX DNA_TcMar-Tc1 229488 229742 49 - . . scaffold816 GLEAN mRNA 223398 238743 0.358147 + . ID=CGI_10015655; scaffold290 WUBlastX LINE_RTE-X 394912 395367 45 + . . scaffold290 GLEAN mRNA 393390 421679 0.99629 + . ID=CGI_10018549; scaffold40164 WUBlastX LINE_L1-Tx1 8255 8404 37 + . . scaffold40164 GLEAN mRNA 2839 12364 0.429437 - . ID=CGI_10003898; scaffold67 WUBlastX DNA_hAT-Tip100 28493 28807 58 + . . scaffold67 GLEAN mRNA 22173 32149 1 - . ID=CGI_10018261; scaffold42570 WUBlastX LINE_CR1 16343 16501 99 + . . scaffold42570 GLEAN mRNA 8098 32477 0.949085 + . ID=CGI_10007233; scaffold39196 WUBlastX DNA_Merlin 50185 50262 40 + . . scaffold39196 GLEAN mRNA 18014 59804 0.5589 - . ID=CGI_10003215; scaffold39196 WUBlastX DNA_Merlin 50185 50262 40 + . . scaffold39196 GLEAN mRNA 39677 52332 0.583111 + . ID=CGI_10003218; scaffold1663 WUBlastX LINE_CR1 109743 109859 35 + . . scaffold1663 GLEAN mRNA 68504 119090 0.88293 - . ID=CGI_10009864; scaffold770 WUBlastX DNA_Kolobok 64964 65104 33 + . . scaffold770 GLEAN mRNA 56737 75604 0.520804 - . ID=CGI_10006265; scaffold770 WUBlastX DNA_Kolobok 65292 65447 44 + . . scaffold770 GLEAN mRNA 56737 75604 0.520804 - . ID=CGI_10006265; scaffold770 WUBlastX DNA_Kolobok 65570 65725 38 + . . scaffold770 GLEAN mRNA 56737 75604 0.520804 - . ID=CGI_10006265; scaffold54 WUBlastX LINE_L1-Tx1 89700 90101 32 + . . scaffold54 GLEAN mRNA 86464 97737 1 + . ID=CGI_10023655; scaffold358 WUBlastX LINE_RTE-X 136562 136663 24 + . . scaffold358 GLEAN mRNA 127311 138997 0.861912 - . ID=CGI_10013024; scaffold867 WUBlastX LTR_ERVK 905716 905880 51 + . . scaffold867 GLEAN mRNA 886050 906355 0.494912 - . ID=CGI_10026243; scaffold867 WUBlastX LTR_ERVK 905716 905880 51 + . . scaffold867 GLEAN mRNA 898407 906644 0.734077 + . ID=CGI_10026244; scaffold867 WUBlastX LTR_ERVK 906177 906260 31 + . . scaffold867 GLEAN mRNA 886050 906355 0.494912 - . ID=CGI_10026243; scaffold867 WUBlastX LTR_ERVK 906177 906260 31 + . . scaffold867 GLEAN mRNA 898407 906644 0.734077 + . ID=CGI_10026244; scaffold280 WUBlastX LINE_CR1 588779 588994 20 - . . scaffold280 GLEAN mRNA 579437 592170 0.977964 - . ID=CGI_10024596; scaffold192 WUBlastX LTR_Gypsy 664238 664354 31 + . . scaffold192 GLEAN mRNA 655198 676504 0.999922 - . ID=CGI_10023723; scaffold38974 WUBlastX DNA_Kolobok 18623 18769 52 + . . scaffold38974 GLEAN mRNA 18623 32076 0.703347 + . ID=CGI_10003119; scaffold38210 WUBlastX LINE_Jockey 24452 24586 32 + . . scaffold38210 GLEAN mRNA 7747 30035 0.24289 - . ID=CGI_10002673; scaffold42946 WUBlastX LINE_L1 35404 36003 51 - . . scaffold42946 GLEAN mRNA 33025 55751 0.459933 + . ID=CGI_10008170; scaffold172 WUBlastX DNA_TcMar-Marin 180823 181344 70 - . . scaffold172 GLEAN mRNA 172027 190586 0.544386 + . ID=CGI_10013522; scaffold317 WUBlastX DNA_Sola 143756 143983 121 + . . scaffold317 GLEAN mRNA 123249 146317 0.852803 + . ID=CGI_10019345; scaffold38058 WUBlastX LTR_Gypsy 4573 4995 61 - . . scaffold38058 GLEAN mRNA 3486 8173 0.999159 - . ID=CGI_10002595; scaffold38934 WUBlastX LTR_Ngaro 20849 21286 108 - . . scaffold38934 GLEAN mRNA 14643 26625 0.999796 + . ID=CGI_10003096; scaffold226 WUBlastX LTR_DIRS 464352 464684 30 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold175 WUBlastX DNA_IS4EU 476813 477712 104 - . . scaffold175 GLEAN mRNA 471780 490454 0.998407 - . ID=CGI_10021334; scaffold1213 WUBlastX LINE_L1 414700 415176 92 - . . scaffold1213 GLEAN mRNA 408300 423198 0.400191 - . ID=CGI_10027450; scaffold219 WUBlastX LINE_R2 130651 131295 88 + . . scaffold219 GLEAN mRNA 124764 139591 0.613723 - . ID=CGI_10016614; scaffold172 WUBlastX LTR_Gypsy 15822 15950 69 + . . scaffold172 GLEAN mRNA 5002 17897 0.999274 - . ID=CGI_10013508; scaffold695 WUBlastX LINE_L1-Tx1 97923 98375 120 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold1690 WUBlastX LINE_L1-Tx1 47775 48080 49 + . . scaffold1690 GLEAN mRNA 9012 64265 0.995929 - . ID=CGI_10003316; scaffold354 WUBlastX LINE_L2 489388 490545 38 - . . scaffold354 GLEAN mRNA 486223 493126 0.637462 - . ID=CGI_10025720; scaffold38854 WUBlastX LTR_Gypsy 31550 31927 132 + . . scaffold38854 GLEAN mRNA 27679 32695 0.651134 - . ID=CGI_10003012; scaffold343 WUBlastX RC_Helitron 612639 613220 115 - . . scaffold343 GLEAN mRNA 606783 616118 0.949663 + . ID=CGI_10021767; scaffold578 WUBlastX DNA_Kolobok 21942 22109 42 + . . scaffold578 GLEAN mRNA 19761 26602 0.244564 - . ID=CGI_10015109; scaffold42946 WUBlastX LINE_L1 35515 35988 98 - . . scaffold42946 GLEAN mRNA 33025 55751 0.459933 + . ID=CGI_10008170; scaffold695 WUBlastX LINE_L1-Tx1 93396 93689 36 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1-Tx1 93658 93870 56 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold834 WUBlastX LINE_RTE-X 81618 81956 76 - . . scaffold834 GLEAN mRNA 70472 85857 0.493914 + . ID=CGI_10004322; scaffold992 WUBlastX LINE_RTE-X 32497 32706 108 + . . scaffold992 GLEAN mRNA 31527 46122 0.937041 - . ID=CGI_10007504; scaffold1525 WUBlastX LTR_Ngaro 357086 357928 75 + . . scaffold1525 GLEAN mRNA 345189 363927 0.815102 - . ID=CGI_10013870; scaffold413 WUBlastX LTR_Ngaro 143638 144108 128 - . . scaffold413 GLEAN mRNA 138311 158515 0.482983 + . ID=CGI_10022796; scaffold41242 WUBlastX LINE_L1 100477 100746 69 + . . scaffold41242 GLEAN mRNA 97496 109439 0.170639 - . ID=CGI_10004889; scaffold337 WUBlastX LINE_RTE-BovB 570716 571057 64 + . . scaffold337 GLEAN mRNA 562237 577539 1 - . ID=CGI_10028070; scaffold102 WUBlastX LINE_RTE-X 970888 971283 74 - . . scaffold102 GLEAN mRNA 961541 993549 0.838657 - . ID=CGI_10028460; scaffold1462 WUBlastX LINE_RTE-BovB 306305 306391 53 + . . scaffold1462 GLEAN mRNA 305995 331618 0.999054 - . ID=CGI_10014383; scaffold305 WUBlastX DNA_hAT-Tip100 178543 178896 21 - . . scaffold305 GLEAN mRNA 172174 179381 0.995798 - . ID=CGI_10019119; scaffold36802 WUBlastX DNA_Academ 3272 3328 86 + . . scaffold36802 GLEAN mRNA 2993 3328 0.649473 + . ID=CGI_10002073; scaffold1860 WUBlastX LINE_L1 97420 97527 57 - . . scaffold1860 GLEAN mRNA 86890 98787 0.482927 + . ID=CGI_10013940; scaffold780 WUBlastX LTR_Ngaro 966972 967148 47 - . . scaffold780 GLEAN mRNA 959842 972028 0.999936 - . ID=CGI_10024749; scaffold817 WUBlastX DNA_Kolobok 67852 68100 113 - . . scaffold817 GLEAN mRNA 54160 69177 0.983542 - . ID=CGI_10008657; scaffold38974 WUBlastX DNA_Kolobok 18765 18863 58 + . . scaffold38974 GLEAN mRNA 18623 32076 0.703347 + . ID=CGI_10003119; scaffold1402 WUBlastX LINE_CR1 342104 342475 245 + . . scaffold1402 GLEAN mRNA 333924 347546 0.999947 - . ID=CGI_10017589; scaffold1066 WUBlastX LTR_Pao 193926 194099 23 - . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold149 WUBlastX LTR_Gypsy 112798 113088 25 + . . scaffold149 GLEAN mRNA 107962 121917 0.899792 + . ID=CGI_10025290; scaffold258 WUBlastX LTR_Gypsy 147702 148169 20 - . . scaffold258 GLEAN mRNA 144330 148695 0.999999 - . ID=CGI_10020044; scaffold163 WUBlastX LINE_Penelope 117082 117549 118 - . . scaffold163 GLEAN mRNA 112985 132830 0.606466 + . ID=CGI_10018612; scaffold1024 WUBlastX DNA_Kolobok 295182 295469 71 - . . scaffold1024 GLEAN mRNA 286016 307543 0.666664 - . ID=CGI_10028532; scaffold86 WUBlastX LINE_L1 217092 217565 24 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold3 WUBlastX LINE_L1-Tx1 116932 117657 64 + . . scaffold3 GLEAN mRNA 115118 120562 0.999993 + . ID=CGI_10027276; scaffold1561 WUBlastX LINE_RTE-X 18471 19823 203 - . . scaffold1561 GLEAN mRNA 6278 19988 0.999234 + . ID=CGI_10005689; scaffold461 WUBlastX LINE_L2 292980 293318 119 - . . scaffold461 GLEAN mRNA 287176 297048 0.67711 - . ID=CGI_10020108; scaffold1866 WUBlastX LINE_L2 204724 204993 52 + . . scaffold1866 GLEAN mRNA 197037 209666 0.769721 - . ID=CGI_10017910; scaffold12 WUBlastX LTR_Gypsy 350362 350619 28 + . . scaffold12 GLEAN mRNA 326477 354530 0.999321 + . ID=CGI_10018042; scaffold1054 WUBlastX DNA_IS4EU 277098 277199 43 + . . scaffold1054 GLEAN mRNA 264440 285046 0.889923 + . ID=CGI_10012963; scaffold1054 WUBlastX DNA_IS4EU 277098 277199 43 + . . scaffold1054 GLEAN mRNA 274617 283441 0.999237 - . ID=CGI_10012964; scaffold1054 WUBlastX DNA_IS4EU 277567 277716 31 + . . scaffold1054 GLEAN mRNA 264440 285046 0.889923 + . ID=CGI_10012963; scaffold1054 WUBlastX DNA_IS4EU 277567 277716 31 + . . scaffold1054 GLEAN mRNA 274617 283441 0.999237 - . ID=CGI_10012964; scaffold1054 WUBlastX DNA_IS4EU 278481 278702 61 + . . scaffold1054 GLEAN mRNA 264440 285046 0.889923 + . ID=CGI_10012963; scaffold1054 WUBlastX DNA_IS4EU 278481 278702 61 + . . scaffold1054 GLEAN mRNA 274617 283441 0.999237 - . ID=CGI_10012964; scaffold102 WUBlastX LINE_RTE-X 971289 971501 50 - . . scaffold102 GLEAN mRNA 961541 993549 0.838657 - . ID=CGI_10028460; scaffold43280 WUBlastX LTR_Gypsy 167586 168119 287 + . . scaffold43280 GLEAN mRNA 132335 177835 0.651964 - . ID=CGI_10009657; scaffold43280 WUBlastX LTR_Gypsy 168359 168928 257 + . . scaffold43280 GLEAN mRNA 132335 177835 0.651964 - . ID=CGI_10009657; scaffold43280 WUBlastX LTR_Gypsy 168939 169742 564 + . . scaffold43280 GLEAN mRNA 132335 177835 0.651964 - . ID=CGI_10009657; scaffold43280 WUBlastX LTR_Gypsy 170155 170280 57 + . . scaffold43280 GLEAN mRNA 132335 177835 0.651964 - . ID=CGI_10009657; scaffold40134 WUBlastX LINE_Penelope 39667 40224 145 + . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold419 WUBlastX LINE_RTE-X 808307 808429 36 + . . scaffold419 GLEAN mRNA 806382 811629 0.999675 - . ID=CGI_10028368; scaffold192 WUBlastX DNA_Sola 23550 24386 348 - . . scaffold192 GLEAN mRNA 23550 26296 0.999536 - . ID=CGI_10023697; scaffold192 WUBlastX DNA_Sola 24537 24746 73 - . . scaffold192 GLEAN mRNA 23550 26296 0.999536 - . ID=CGI_10023697; scaffold192 WUBlastX DNA_Sola 24964 25251 197 - . . scaffold192 GLEAN mRNA 23550 26296 0.999536 - . ID=CGI_10023697; scaffold192 WUBlastX DNA_Sola 25403 26296 486 - . . scaffold192 GLEAN mRNA 23550 26296 0.999536 - . ID=CGI_10023697; scaffold85 WUBlastX LTR_Gypsy-Cigr 635280 635756 197 - . . scaffold85 GLEAN mRNA 611975 636254 1 - . ID=CGI_10020719; scaffold313 WUBlastX DNA_En-Spm 614834 614965 91 - . . scaffold313 GLEAN mRNA 612366 622273 0.647784 - . ID=CGI_10026614; scaffold290 WUBlastX LTR_Gypsy 552319 552690 127 + . . scaffold290 GLEAN mRNA 545890 556657 0.999676 + . ID=CGI_10018556; scaffold43878 WUBlastX DNA_Kolobok 63246 63506 111 + . . scaffold43878 GLEAN mRNA 63246 64902 0.999414 + . ID=CGI_10013712; scaffold43878 WUBlastX DNA_Kolobok 63994 64176 60 + . . scaffold43878 GLEAN mRNA 63246 64902 0.999414 + . ID=CGI_10013712; scaffold334 WUBlastX LINE_L1-Tx1 1046142 1046270 41 + . . scaffold334 GLEAN mRNA 1033963 1069994 0.961302 - . ID=CGI_10025971; scaffold1377 WUBlastX DNA_IS4EU 186566 186871 96 + . . scaffold1377 GLEAN mRNA 179618 201716 0.456444 + . ID=CGI_10008623; scaffold1518 WUBlastX LTR_Ngaro 271081 271491 195 - . . scaffold1518 GLEAN mRNA 258241 287104 0.241996 + . ID=CGI_10017803; scaffold1825 WUBlastX LINE_CR1-L2 159785 159835 36 + . . scaffold1825 GLEAN mRNA 146338 162532 0.790331 + . ID=CGI_10011146; scaffold354 WUBlastX LTR_Ngaro 140831 141037 100 + . . scaffold354 GLEAN mRNA 139508 142225 0.54483 - . ID=CGI_10025700; scaffold354 WUBlastX LTR_Ngaro 140831 141037 100 + . . scaffold354 GLEAN mRNA 139640 141904 0.996603 + . ID=CGI_10025701; scaffold36410 WUBlastX DNA_Harbinger 5596 5775 55 + . . scaffold36410 GLEAN mRNA 4689 21980 0.354487 - . ID=CGI_10001887; scaffold1757 WUBlastX DNA_Academ 43493 43762 58 - . . scaffold1757 GLEAN mRNA 43472 43939 0.579796 - . ID=CGI_10005113; scaffold749 WUBlastX LINE_RTE-X 53718 54248 110 - . . scaffold749 GLEAN mRNA 51985 56678 1 - . ID=CGI_10002827; scaffold43574 WUBlastX LINE_RTE-X 186582 187181 102 - . . scaffold43574 GLEAN mRNA 179931 197375 0.814122 + . ID=CGI_10010880; scaffold1791 WUBlastX LTR_Ngaro 97278 97706 196 + . . scaffold1791 GLEAN mRNA 83527 103062 0.896369 - . ID=CGI_10007868; C23316 WUBlastX LTR_Ngaro 953 1111 157 - . . C23316 GLEAN mRNA 644 1111 0.999999 - . ID=CGI_10000116; scaffold41954 WUBlastX LINE_L1-Tx1 102274 102354 37 - . . scaffold41954 GLEAN mRNA 93049 113682 0.989895 + . ID=CGI_10005853; scaffold213 WUBlastX DNA_Maverick 170041 170355 133 - . . scaffold213 GLEAN mRNA 155081 183799 0.877289 - . ID=CGI_10007552; scaffold213 WUBlastX DNA_Maverick 170357 170542 158 - . . scaffold213 GLEAN mRNA 155081 183799 0.877289 - . ID=CGI_10007552; scaffold213 WUBlastX DNA_Maverick 170565 170981 326 - . . scaffold213 GLEAN mRNA 155081 183799 0.877289 - . ID=CGI_10007552; scaffold213 WUBlastX DNA_Maverick 170998 171831 614 - . . scaffold213 GLEAN mRNA 155081 183799 0.877289 - . ID=CGI_10007552; scaffold213 WUBlastX DNA_Maverick 172213 172881 91 - . . scaffold213 GLEAN mRNA 155081 183799 0.877289 - . ID=CGI_10007552; scaffold524 WUBlastX DNA_Academ 53042 53245 181 - . . scaffold524 GLEAN mRNA 52982 53245 0.999451 - . ID=CGI_10016597; scaffold39482 WUBlastX DNA_Zator 3975 6071 1258 + . . scaffold39482 GLEAN mRNA 342 10800 0.374169 - . ID=CGI_10003389; scaffold39482 WUBlastX DNA_Zator 6965 7123 93 + . . scaffold39482 GLEAN mRNA 342 10800 0.374169 - . ID=CGI_10003389; scaffold39482 WUBlastX DNA_Zator 7224 7721 139 + . . scaffold39482 GLEAN mRNA 342 10800 0.374169 - . ID=CGI_10003389; scaffold43182 WUBlastX LINE_L2 111958 112803 110 - . . scaffold43182 GLEAN mRNA 103221 129206 0.72893 - . ID=CGI_10009201; scaffold149 WUBlastX LINE_L1-Tx1 622657 623472 54 + . . scaffold149 GLEAN mRNA 618631 623519 0.999675 - . ID=CGI_10025312; scaffold1749 WUBlastX LINE_RTE-X 173910 174092 81 - . . scaffold1749 GLEAN mRNA 168130 177487 0.428785 + . ID=CGI_10008260; scaffold1221 WUBlastX LINE_L1-Tx1 525935 526402 60 + . . scaffold1221 GLEAN mRNA 522455 543272 0.967384 + . ID=CGI_10019749; scaffold1221 WUBlastX LINE_L1-Tx1 526417 526815 22 + . . scaffold1221 GLEAN mRNA 522455 543272 0.967384 + . ID=CGI_10019749; scaffold1318 WUBlastX DNA_TcMar-Tc1 48130 48585 205 + . . scaffold1318 GLEAN mRNA 47679 59079 0.328272 + . ID=CGI_10008644; scaffold1532 WUBlastX LTR_Gypsy 393043 393513 125 + . . scaffold1532 GLEAN mRNA 391874 403369 0.462643 + . ID=CGI_10028249; scaffold40424 WUBlastX DNA_Sola 25032 25325 119 - . . scaffold40424 GLEAN mRNA 14342 47521 0.651302 - . ID=CGI_10004127; scaffold40424 WUBlastX DNA_Sola 26807 27022 59 - . . scaffold40424 GLEAN mRNA 14342 47521 0.651302 - . ID=CGI_10004127; scaffold469 WUBlastX LTR_Pao 623550 624077 372 + . . scaffold469 GLEAN mRNA 620008 639653 0.99956 + . ID=CGI_10024690; scaffold38480 WUBlastX LTR_Ngaro 52831 53205 204 - . . scaffold38480 GLEAN mRNA 52810 53205 1 - . ID=CGI_10002772; scaffold522 WUBlastX LTR_Gypsy 556711 557076 50 - . . scaffold522 GLEAN mRNA 555460 561290 0.999999 + . ID=CGI_10020338; scaffold163 WUBlastX DNA_Harbinger 502753 502866 116 - . . scaffold163 GLEAN mRNA 491676 503218 1 - . ID=CGI_10018631; scaffold163 WUBlastX DNA_Harbinger 502753 502866 116 - . . scaffold163 GLEAN mRNA 492891 503609 0.858032 + . ID=CGI_10018632; scaffold1174 WUBlastX DNA_Kolobok-IS4 928950 929675 235 - . . scaffold1174 GLEAN mRNA 917037 939462 0.964473 + . ID=CGI_10026072; scaffold198 WUBlastX LTR_Gypsy 797317 798003 203 + . . scaffold198 GLEAN mRNA 771982 806817 0.999999 + . ID=CGI_10027821; scaffold42648 WUBlastX LTR_Pao 172245 172646 281 - . . scaffold42648 GLEAN mRNA 167771 174774 0.98388 - . ID=CGI_10007395; scaffold102 WUBlastX LINE_RTE-BovB 984298 984411 42 + . . scaffold102 GLEAN mRNA 961541 993549 0.838657 - . ID=CGI_10028460; scaffold102 WUBlastX LINE_RTE-BovB 984700 985005 171 + . . scaffold102 GLEAN mRNA 961541 993549 0.838657 - . ID=CGI_10028460; scaffold86 WUBlastX LINE_L1-Tx1 217592 217765 59 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold853 WUBlastX LTR_Gypsy 449152 449310 24 - . . scaffold853 GLEAN mRNA 448693 455013 0.999949 - . ID=CGI_10017517; scaffold853 WUBlastX LTR_Gypsy 449631 450548 198 - . . scaffold853 GLEAN mRNA 448693 455013 0.999949 - . ID=CGI_10017517; scaffold40208 WUBlastX LINE_RTE-X 84495 84935 151 + . . scaffold40208 GLEAN mRNA 72712 87059 0.842413 + . ID=CGI_10003956; scaffold40208 WUBlastX LINE_RTE-X 85102 85359 114 + . . scaffold40208 GLEAN mRNA 72712 87059 0.842413 + . ID=CGI_10003956; scaffold40556 WUBlastX LTR_Gypsy 12323 12913 309 + . . scaffold40556 GLEAN mRNA 9810 16493 0.715629 - . ID=CGI_10004250; scaffold410 WUBlastX LTR_DIRS 302394 303392 180 - . . scaffold410 GLEAN mRNA 298599 310174 0.996652 + . ID=CGI_10020635; scaffold1397 WUBlastX DNA_IS4EU 209719 209871 71 - . . scaffold1397 GLEAN mRNA 206907 222276 0.644927 - . ID=CGI_10017120; scaffold1397 WUBlastX DNA_IS4EU 209868 210170 222 - . . scaffold1397 GLEAN mRNA 206907 222276 0.644927 - . ID=CGI_10017120; scaffold1382 WUBlastX DNA_Harbinger 218944 219264 170 + . . scaffold1382 GLEAN mRNA 218944 220078 0.999189 + . ID=CGI_10011178; scaffold1382 WUBlastX DNA_Harbinger 218920 219264 170 + . . scaffold1382 GLEAN mRNA 212938 228080 0.974072 - . ID=CGI_10011177; scaffold40794 WUBlastX DNA_IS4EU 23579 24037 212 - . . scaffold40794 GLEAN mRNA 13820 26649 0.999201 - . ID=CGI_10004495; scaffold40794 WUBlastX DNA_IS4EU 24031 24507 85 - . . scaffold40794 GLEAN mRNA 13820 26649 0.999201 - . ID=CGI_10004495; scaffold323 WUBlastX RC_Helitron 52946 53617 34 + . . scaffold323 GLEAN mRNA 43017 58412 0.999949 + . ID=CGI_10009773; scaffold40564 WUBlastX LINE_L1 8514 9380 222 + . . scaffold40564 GLEAN mRNA 6674 28756 0.488599 + . ID=CGI_10004207; scaffold20 WUBlastX LINE_L2 132992 133678 236 + . . scaffold20 GLEAN mRNA 96944 140245 0.183716 - . ID=CGI_10023563; scaffold20 WUBlastX LINE_L2 132992 133678 236 + . . scaffold20 GLEAN mRNA 129233 205190 0.240843 + . ID=CGI_10023564; scaffold459 WUBlastX DNA_Merlin 52351 52653 189 - . . scaffold459 GLEAN mRNA 48177 82844 0.45554 + . ID=CGI_10018167; scaffold1009 WUBlastX DNA_Kolobok-IS4 431527 431706 34 + . . scaffold1009 GLEAN mRNA 430368 431934 1 + . ID=CGI_10028733; scaffold896 WUBlastX LINE_RTE-X 438049 438420 134 - . . scaffold896 GLEAN mRNA 429849 443777 0.584747 + . ID=CGI_10022849; scaffold896 WUBlastX LINE_RTE-X 438049 438420 134 - . . scaffold896 GLEAN mRNA 434715 450263 0.551142 - . ID=CGI_10022850; scaffold1036 WUBlastX DNA_TcMar-Tc1 173362 173784 98 + . . scaffold1036 GLEAN mRNA 165168 179169 0.593142 - . ID=CGI_10019951; scaffold1630 WUBlastX DNA_hAT 209397 209858 122 - . . scaffold1630 GLEAN mRNA 208694 211851 1 - . ID=CGI_10013425; scaffold1630 WUBlastX DNA_hAT 210030 210818 238 - . . scaffold1630 GLEAN mRNA 208694 211851 1 - . ID=CGI_10013425; scaffold591 WUBlastX LTR_Ngaro 600080 601042 260 - . . scaffold591 GLEAN mRNA 577441 607957 0.997895 + . ID=CGI_10027576; scaffold41898 WUBlastX DNA_IS4EU 1777 2697 334 + . . scaffold41898 GLEAN mRNA 1759 2697 1 + . ID=CGI_10005830; C36680 WUBlastX LINE_CR1 9674 9937 73 - . . C36680 GLEAN mRNA 2216 22548 0.727902 - . ID=CGI_10002070; scaffold1831 WUBlastX LINE_RTE-X 25595 25768 65 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold40836 WUBlastX LINE_RTE-X 86315 86479 96 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold1788 WUBlastX LINE_L1-Tx1 51763 52188 104 + . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold1423 WUBlastX DNA_hAT 194973 195206 30 - . . scaffold1423 GLEAN mRNA 194970 198353 1 - . ID=CGI_10025421; scaffold354 WUBlastX DNA_TcMar-Tc1 791358 792068 313 - . . scaffold354 GLEAN mRNA 789292 794805 0.742842 - . ID=CGI_10025738; scaffold1301 WUBlastX LTR_Ngaro 318962 319939 346 + . . scaffold1301 GLEAN mRNA 311038 320027 0.984699 - . ID=CGI_10027714; scaffold419 WUBlastX LINE_L1-Tx1 1078623 1078751 22 + . . scaffold419 GLEAN mRNA 1076054 1088367 0.937506 + . ID=CGI_10028386; scaffold933 WUBlastX DNA_Zator 432407 432502 101 + . . scaffold933 GLEAN mRNA 432407 433172 1 + . ID=CGI_10016726; scaffold933 WUBlastX DNA_Zator 432603 433148 145 + . . scaffold933 GLEAN mRNA 432407 433172 1 + . ID=CGI_10016726; scaffold305 WUBlastX LINE_L1-Tx1 138909 139559 97 + . . scaffold305 GLEAN mRNA 133464 157357 0.544675 - . ID=CGI_10019118; scaffold39134 WUBlastX LTR_Gypsy 48751 48876 28 + . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold425 WUBlastX DNA_Kolobok 143017 143190 72 - . . scaffold425 GLEAN mRNA 143014 144448 0.999415 - . ID=CGI_10025979; scaffold425 WUBlastX DNA_Kolobok 144020 144448 173 - . . scaffold425 GLEAN mRNA 143014 144448 0.999415 - . ID=CGI_10025979; scaffold332 WUBlastX LINE_RTE-X 283350 284498 385 + . . scaffold332 GLEAN mRNA 282632 290184 0.40014 - . ID=CGI_10020880; scaffold43008 WUBlastX LINE_RTE-X 2462 2701 28 + . . scaffold43008 GLEAN mRNA 2147 17942 0.982229 + . ID=CGI_10008457; scaffold867 WUBlastX LINE_RTE-X 496782 497594 184 + . . scaffold867 GLEAN mRNA 490506 500925 0.812964 - . ID=CGI_10026232; scaffold43538 WUBlastX LTR_Gypsy 32425 33960 380 + . . scaffold43538 GLEAN mRNA 31086 35366 0.988787 - . ID=CGI_10010813; scaffold1323 WUBlastX LTR_Ngaro 77597 78112 305 - . . scaffold1323 GLEAN mRNA 62759 90642 0.99865 + . ID=CGI_10009082; scaffold43818 WUBlastX LINE_RTE-X 329099 329668 149 + . . scaffold43818 GLEAN mRNA 325023 332374 0.596002 + . ID=CGI_10012778; scaffold43818 WUBlastX LINE_RTE-X 329680 330288 221 + . . scaffold43818 GLEAN mRNA 325023 332374 0.596002 + . ID=CGI_10012778; scaffold1323 WUBlastX LTR_Ngaro 76122 76778 207 - . . scaffold1323 GLEAN mRNA 62759 90642 0.99865 + . ID=CGI_10009082; scaffold1603 WUBlastX LTR_Pao 331560 331610 24 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold1603 WUBlastX LTR_Pao 333688 333831 42 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold43538 WUBlastX LTR_Gypsy 31880 32503 27 + . . scaffold43538 GLEAN mRNA 31086 35366 0.988787 - . ID=CGI_10010813; scaffold42366 WUBlastX DNA_hAT 72798 73394 394 + . . scaffold42366 GLEAN mRNA 24937 76161 0.245386 + . ID=CGI_10006699; scaffold42366 WUBlastX DNA_hAT 74654 74950 144 + . . scaffold42366 GLEAN mRNA 24937 76161 0.245386 + . ID=CGI_10006699; scaffold42366 WUBlastX DNA_hAT 75580 75822 45 + . . scaffold42366 GLEAN mRNA 24937 76161 0.245386 + . ID=CGI_10006699; scaffold1376 WUBlastX LINE_L1 44462 44647 108 - . . scaffold1376 GLEAN mRNA 39109 52499 0.502849 - . ID=CGI_10002795; scaffold38374 WUBlastX LTR_Gypsy 13896 14594 26 + . . scaffold38374 GLEAN mRNA 8302 17987 0.957619 + . ID=CGI_10002746; scaffold1125 WUBlastX LINE_L1-Tx1 274163 274885 133 - . . scaffold1125 GLEAN mRNA 258264 306646 0.367081 + . ID=CGI_10012342; scaffold1125 WUBlastX LINE_L1-Tx1 274945 276555 169 - . . scaffold1125 GLEAN mRNA 258264 306646 0.367081 + . ID=CGI_10012342; scaffold204 WUBlastX LINE_L1-Tx1 1010967 1011944 494 - . . scaffold204 GLEAN mRNA 981338 1035223 0.34759 - . ID=CGI_10026142; scaffold57 WUBlastX DNA_hAT 293036 293167 68 - . . scaffold57 GLEAN mRNA 289160 294391 1 - . ID=CGI_10020549; scaffold456 WUBlastX LTR_Gypsy 141567 141818 207 + . . scaffold456 GLEAN mRNA 102025 155096 0.577611 + . ID=CGI_10006863; scaffold1551 WUBlastX LTR_Ngaro 74022 74393 200 + . . scaffold1551 GLEAN mRNA 48041 86336 0.263167 + . ID=CGI_10011471; scaffold1551 WUBlastX LTR_Ngaro 74388 74726 232 + . . scaffold1551 GLEAN mRNA 48041 86336 0.263167 + . ID=CGI_10011471; scaffold964 WUBlastX LTR_Ngaro 224047 224289 169 + . . scaffold964 GLEAN mRNA 212100 240231 0.999794 - . ID=CGI_10009735; scaffold964 WUBlastX LTR_Ngaro 224293 224508 125 + . . scaffold964 GLEAN mRNA 212100 240231 0.999794 - . ID=CGI_10009735; scaffold509 WUBlastX LINE_L1 256058 256195 80 + . . scaffold509 GLEAN mRNA 253981 269937 0.999344 + . ID=CGI_10018647; scaffold527 WUBlastX DNA_hAT-hATw 358665 361106 661 - . . scaffold527 GLEAN mRNA 356733 368285 0.999351 + . ID=CGI_10015987; scaffold393 WUBlastX LINE_RTE-X 1043343 1043510 31 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold925 WUBlastX LTR_DIRS 140354 141217 326 - . . scaffold925 GLEAN mRNA 124334 157225 0.393067 - . ID=CGI_10017412; scaffold1377 WUBlastX LTR_Gypsy 149943 150026 21 + . . scaffold1377 GLEAN mRNA 119143 150442 0.64366 + . ID=CGI_10008621; scaffold625 WUBlastX DNA_IS 696091 696615 803 + . . scaffold625 GLEAN mRNA 692176 702467 0.879994 - . ID=CGI_10023433; scaffold36598 WUBlastX LTR_Ngaro 29580 30023 163 - . . scaffold36598 GLEAN mRNA 27586 31293 0.99428 - . ID=CGI_10002013; scaffold36598 WUBlastX LTR_Ngaro 30301 31068 379 - . . scaffold36598 GLEAN mRNA 27586 31293 0.99428 - . ID=CGI_10002013; scaffold1322 WUBlastX LINE_RTE-X 368634 368750 46 - . . scaffold1322 GLEAN mRNA 366517 374727 0.833191 + . ID=CGI_10019476; scaffold271 WUBlastX LINE_CR1-L2 476155 476328 70 + . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold1589 WUBlastX LTR_Gypsy-Cigr 594962 595057 51 + . . scaffold1589 GLEAN mRNA 592118 603104 0.965132 - . ID=CGI_10024122; scaffold1255 WUBlastX LTR_Gypsy 393394 393627 59 + . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold1750 WUBlastX LINE_RTE-X 17911 18588 429 + . . scaffold1750 GLEAN mRNA 8946 22537 0.686268 + . ID=CGI_10021461; scaffold36420 WUBlastX LINE_L2 28826 29071 62 - . . scaffold36420 GLEAN mRNA 25878 32161 0.835531 + . ID=CGI_10001889; scaffold760 WUBlastX DNA_hAT 794793 795287 48 + . . scaffold760 GLEAN mRNA 791400 798427 0.985265 + . ID=CGI_10024012; scaffold1397 WUBlastX DNA_hAT-Tip100 280234 280527 75 + . . scaffold1397 GLEAN mRNA 280234 280587 1 + . ID=CGI_10017121; scaffold40182 WUBlastX LINE_L2 17636 17770 22 + . . scaffold40182 GLEAN mRNA 7136 27863 0.492081 + . ID=CGI_10003936; scaffold6 WUBlastX DNA_Harbinger 703407 703607 78 + . . scaffold6 GLEAN mRNA 701995 741494 0.270237 + . ID=CGI_10022334; scaffold1321 WUBlastX DNA_Harbinger 124920 125093 56 - . . scaffold1321 GLEAN mRNA 124908 130065 0.986166 - . ID=CGI_10010661; scaffold43660 WUBlastX DNA_hAT-Blackja 182374 182454 37 - . . scaffold43660 GLEAN mRNA 158768 189009 0.999991 - . ID=CGI_10011666; scaffold1227 WUBlastX DNA_Kolobok-Hyd 209851 209913 33 + . . scaffold1227 GLEAN mRNA 209453 211287 0.982351 + . ID=CGI_10010056; scaffold633 WUBlastX LINE_L1 56639 57370 35 + . . scaffold633 GLEAN mRNA 49171 62840 0.82948 + . ID=CGI_10004269; scaffold1860 WUBlastX LINE_L1 97181 97372 42 - . . scaffold1860 GLEAN mRNA 86890 98787 0.482927 + . ID=CGI_10013940; scaffold1016 WUBlastX DNA_P 283873 284367 69 - . . scaffold1016 GLEAN mRNA 272595 292035 0.804509 - . ID=CGI_10016891; scaffold1093 WUBlastX LINE_Penelope 404881 405096 28 - . . scaffold1093 GLEAN mRNA 404049 410721 0.987785 + . ID=CGI_10019807; scaffold393 WUBlastX LINE_Rex-Babar 1042716 1042775 20 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold40182 WUBlastX LINE_RTE-BovB 18582 18830 36 + . . scaffold40182 GLEAN mRNA 7136 27863 0.492081 + . ID=CGI_10003936; scaffold493 WUBlastX LINE_RTE-X 36214 36402 34 + . . scaffold493 GLEAN mRNA 33582 40988 0.999595 + . ID=CGI_10007246; scaffold43782 WUBlastX LINE_RTE-X 251523 251840 39 + . . scaffold43782 GLEAN mRNA 239878 255426 0.64999 + . ID=CGI_10012371; C32216 WUBlastX LINE_R1 3097 3249 22 + . . C32216 GLEAN mRNA 2248 3254 0.999212 + . ID=CGI_10000864; scaffold855 WUBlastX LTR_Pao 13200 13261 44 - . . scaffold855 GLEAN mRNA 12491 13261 0.978042 - . ID=CGI_10001161; scaffold100 WUBlastX DNA_Crypton 727203 728027 55 + . . scaffold100 GLEAN mRNA 726987 729860 0.999661 + . ID=CGI_10026450; scaffold35162 WUBlastX DNA_Crypton 16160 16456 79 - . . scaffold35162 GLEAN mRNA 16160 20596 0.996194 - . ID=CGI_10001426; scaffold388 WUBlastX DNA_Academ 279080 279139 28 + . . scaffold388 GLEAN mRNA 264648 287159 0.999647 + . ID=CGI_10020472; scaffold388 WUBlastX DNA_Academ 279080 279139 28 + . . scaffold388 GLEAN mRNA 270944 331971 0.126469 - . ID=CGI_10020473; scaffold1491 WUBlastX LTR_Gypsy 47351 47422 52 - . . scaffold1491 GLEAN mRNA 47099 47422 0.999372 - . ID=CGI_10005612; scaffold41568 WUBlastX DNA_IS4EU 69989 70378 85 + . . scaffold41568 GLEAN mRNA 69989 70378 0.618186 + . ID=CGI_10005299; scaffold1174 WUBlastX DNA_Harbinger 976904 977128 51 - . . scaffold1174 GLEAN mRNA 969973 990165 0.301625 + . ID=CGI_10026076; scaffold41898 WUBlastX LTR_Gypsy 99037 99228 68 - . . scaffold41898 GLEAN mRNA 97771 99228 0.999846 - . ID=CGI_10005832; scaffold962 WUBlastX LINE_L1 900155 900385 44 - . . scaffold962 GLEAN mRNA 895122 910659 0.455688 + . ID=CGI_10027670; scaffold536 WUBlastX LINE_RTE-X 88249 88494 48 + . . scaffold536 GLEAN mRNA 68482 93233 0.999348 + . ID=CGI_10006670; scaffold101 WUBlastX LINE_RTE-X 312712 312933 69 + . . scaffold101 GLEAN mRNA 308692 328638 0.999351 + . ID=CGI_10021645; scaffold101 WUBlastX LINE_RTE-X 312712 312933 69 + . . scaffold101 GLEAN mRNA 312467 328385 0.843729 - . ID=CGI_10021646; scaffold1816 WUBlastX DNA_TcMar-Tc1 19422 19745 75 + . . scaffold1816 GLEAN mRNA 19422 19805 0.999372 + . ID=CGI_10014391; scaffold1710 WUBlastX LINE_R2-Hero 723229 723381 45 + . . scaffold1710 GLEAN mRNA 716235 735298 0.587067 - . ID=CGI_10022373; scaffold880 WUBlastX DNA_Kolobok-Hyd 617251 617385 37 - . . scaffold880 GLEAN mRNA 617251 619729 0.637182 - . ID=CGI_10022203; scaffold867 WUBlastX LINE_Jockey 495313 495372 20 + . . scaffold867 GLEAN mRNA 490506 500925 0.812964 - . ID=CGI_10026232; scaffold146 WUBlastX LINE_Penelope 643735 643986 46 - . . scaffold146 GLEAN mRNA 638309 652967 0.499837 - . ID=CGI_10024916; scaffold1154 WUBlastX LINE_RTE-X 813852 814166 64 + . . scaffold1154 GLEAN mRNA 811283 818578 1 - . ID=CGI_10026191; scaffold952 WUBlastX LINE_L1-Tx1 25090 25434 55 + . . scaffold952 GLEAN mRNA 12544 26052 0.999676 + . ID=CGI_10002898; scaffold1705 WUBlastX LTR_Copia 91067 91141 20 - . . scaffold1705 GLEAN mRNA 68885 100114 0.343232 + . ID=CGI_10007468; scaffold42264 WUBlastX LINE_L2 77375 77872 76 + . . scaffold42264 GLEAN mRNA 77336 78370 0.999917 + . ID=CGI_10006519; scaffold496 WUBlastX LINE_CR1 725485 725901 77 + . . scaffold496 GLEAN mRNA 713503 727921 0.615833 - . ID=CGI_10022473; scaffold77 WUBlastX LINE_CR1 168490 168567 28 + . . scaffold77 GLEAN mRNA 166912 189780 0.993583 + . ID=CGI_10027970; scaffold683 WUBlastX LINE_CR1 160130 160435 22 - . . scaffold683 GLEAN mRNA 156724 197942 0.700222 + . ID=CGI_10010360; scaffold276 WUBlastX DNA_IS4EU 24790 24924 54 + . . scaffold276 GLEAN mRNA 24613 26343 0.999985 + . ID=CGI_10006434; scaffold1583 WUBlastX LTR_Gypsy 756984 757121 26 - . . scaffold1583 GLEAN mRNA 756798 766988 0.512265 - . ID=CGI_10025840; scaffold37500 WUBlastX LINE_L2 31366 31752 92 - . . scaffold37500 GLEAN mRNA 16467 40519 0.193393 - . ID=CGI_10002382; scaffold343 WUBlastX DNA_Kolobok 624044 624325 111 - . . scaffold343 GLEAN mRNA 618238 636839 0.461317 - . ID=CGI_10021768; scaffold343 WUBlastX DNA_Kolobok 624044 624325 111 - . . scaffold343 GLEAN mRNA 618887 626946 0.427987 + . ID=CGI_10021769; scaffold79 WUBlastX LINE_RTE-X 266070 266399 47 + . . scaffold79 GLEAN mRNA 257196 271359 0.644901 + . ID=CGI_10024620; scaffold210 WUBlastX LINE_RTE-X 148113 148220 47 + . . scaffold210 GLEAN mRNA 130765 152251 0.999676 - . ID=CGI_10015883; scaffold203 WUBlastX LINE_RTE-X 425854 426126 61 - . . scaffold203 GLEAN mRNA 422258 430817 0.3597 + . ID=CGI_10021072; scaffold707 WUBlastX DNA_Sola 37243 37593 90 + . . scaffold707 GLEAN mRNA 28186 50322 0.998251 + . ID=CGI_10007721; scaffold912 WUBlastX LINE_L1-Tx1 36218 36430 92 - . . scaffold912 GLEAN mRNA 34749 48869 0.492255 - . ID=CGI_10002926; scaffold145 WUBlastX LTR_Gypsy 1152131 1152340 21 + . . scaffold145 GLEAN mRNA 1139972 1169601 0.998984 + . ID=CGI_10026576; scaffold1014 WUBlastX DNA_Crypton 516343 517020 65 - . . scaffold1014 GLEAN mRNA 485363 517722 0.614012 - . ID=CGI_10020274; scaffold610 WUBlastX DNA_Kolobok-IS4 105605 105919 48 - . . scaffold610 GLEAN mRNA 101538 106463 0.827114 + . ID=CGI_10021088; scaffold12 WUBlastX DNA_hAT-hATw 3252 3350 24 - . . scaffold12 GLEAN mRNA 533 12832 0.970295 + . ID=CGI_10018011; scaffold12 WUBlastX DNA_hAT-hATw 3240 3329 27 - . . scaffold12 GLEAN mRNA 533 12832 0.970295 + . ID=CGI_10018011; scaffold12 WUBlastX DNA_hAT-hATw 3715 4314 39 - . . scaffold12 GLEAN mRNA 533 12832 0.970295 + . ID=CGI_10018011; scaffold457 WUBlastX DNA_TcMar-Marin 214750 214986 65 - . . scaffold457 GLEAN mRNA 213050 222173 0.400336 - . ID=CGI_10014534; scaffold1634 WUBlastX DNA_TcMar-Fot1 91374 91628 100 - . . scaffold1634 GLEAN mRNA 89739 98250 0.998588 + . ID=CGI_10005153; scaffold274 WUBlastX LINE_Penelope 34001 34348 84 - . . scaffold274 GLEAN mRNA 31807 34983 0.990803 + . ID=CGI_10017008; scaffold94 WUBlastX DNA_Maverick 49343 49636 108 + . . scaffold94 GLEAN mRNA 43492 50308 0.779981 + . ID=CGI_10013908; scaffold393 WUBlastX DNA_TcMar-Tc1 349395 349613 83 + . . scaffold393 GLEAN mRNA 346842 359147 0.976322 + . ID=CGI_10026879; scaffold393 WUBlastX DNA_TcMar-Tc1 351273 351491 83 + . . scaffold393 GLEAN mRNA 346842 359147 0.976322 + . ID=CGI_10026879; scaffold1127 WUBlastX LINE_L1 5987 6322 73 - . . scaffold1127 GLEAN mRNA 44 22807 0.494799 - . ID=CGI_10010645; scaffold533 WUBlastX LINE_L2 95960 96691 94 + . . scaffold533 GLEAN mRNA 82717 99405 0.998409 - . ID=CGI_10005555; scaffold40836 WUBlastX LINE_L2 86542 87051 43 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold1018 WUBlastX LTR_Ngaro 442052 442276 118 + . . scaffold1018 GLEAN mRNA 435304 447286 0.992449 + . ID=CGI_10019772; scaffold1018 WUBlastX LTR_Ngaro 442052 442276 118 + . . scaffold1018 GLEAN mRNA 435432 442583 0.542495 - . ID=CGI_10019773; scaffold1673 WUBlastX LTR_Gypsy-Cigr 52922 53119 125 - . . scaffold1673 GLEAN mRNA 51832 54257 0.720264 - . ID=CGI_10013570; scaffold90 WUBlastX LTR_Gypsy 140069 140539 107 + . . scaffold90 GLEAN mRNA 135730 142790 0.547035 + . ID=CGI_10015161; scaffold43258 WUBlastX DNA_TcMar-Marin 93359 93922 64 - . . scaffold43258 GLEAN mRNA 90747 124672 0.523441 + . ID=CGI_10009633; scaffold116 WUBlastX LINE_RTE-X 212328 212651 68 + . . scaffold116 GLEAN mRNA 199454 222023 0.8905 - . ID=CGI_10009421; scaffold313 WUBlastX LTR_Ngaro 1023469 1023642 27 - . . scaffold313 GLEAN mRNA 1014206 1026476 0.354197 - . ID=CGI_10026633; scaffold1067 WUBlastX DNA_Sola 102554 102847 32 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold42570 WUBlastX LINE_CR1-L2 16572 16847 93 + . . scaffold42570 GLEAN mRNA 8098 32477 0.949085 + . ID=CGI_10007233; C32578 WUBlastX LINE_L2 9396 9482 66 + . . C32578 GLEAN mRNA 9396 9944 0.649383 + . ID=CGI_10000916; scaffold1322 WUBlastX LTR_Ngaro 589444 590124 63 - . . scaffold1322 GLEAN mRNA 571511 590238 0.999351 - . ID=CGI_10019486; scaffold809 WUBlastX LTR_Ngaro 107974 108255 85 + . . scaffold809 GLEAN mRNA 102798 115167 0.991748 + . ID=CGI_10006490; scaffold1301 WUBlastX DNA_MuDR 796026 796304 100 - . . scaffold1301 GLEAN mRNA 795655 798380 0.702584 - . ID=CGI_10027744; scaffold1301 WUBlastX DNA_MuDR 796026 796304 100 - . . scaffold1301 GLEAN mRNA 781075 819646 0.518044 + . ID=CGI_10027743; scaffold1324 WUBlastX LINE_Penelope 19636 19941 111 + . . scaffold1324 GLEAN mRNA 14127 23793 0.98702 - . ID=CGI_10018371; scaffold40680 WUBlastX DNA_TcMar-Tc1 11135 11290 69 + . . scaffold40680 GLEAN mRNA 16 36776 0.246623 - . ID=CGI_10004353; scaffold1399 WUBlastX LTR_Gypsy 119512 120546 87 - . . scaffold1399 GLEAN mRNA 95731 121782 0.470575 + . ID=CGI_10007050; scaffold595 WUBlastX LTR_Ngaro 92576 93316 80 - . . scaffold595 GLEAN mRNA 66058 94029 0.989948 - . ID=CGI_10005863; scaffold504 WUBlastX LTR_Gypsy 6578 7054 141 + . . scaffold504 GLEAN mRNA 4327 7355 1 - . ID=CGI_10016012; scaffold880 WUBlastX LTR_Gypsy 511785 512042 45 + . . scaffold880 GLEAN mRNA 490990 515117 0.998312 - . ID=CGI_10022196; scaffold976 WUBlastX DNA_Harbinger 275067 275273 122 + . . scaffold976 GLEAN mRNA 266197 282153 0.702349 + . ID=CGI_10014014; scaffold976 WUBlastX DNA_Harbinger 275319 275369 28 + . . scaffold976 GLEAN mRNA 266197 282153 0.702349 + . ID=CGI_10014014; scaffold313 WUBlastX LINE_L1-Tx1 1019225 1019416 71 - . . scaffold313 GLEAN mRNA 1014206 1026476 0.354197 - . ID=CGI_10026633; scaffold533 WUBlastX LINE_DRE 92187 92999 64 + . . scaffold533 GLEAN mRNA 82717 99405 0.998409 - . ID=CGI_10005555; scaffold38210 WUBlastX LINE_L2 22874 23455 31 + . . scaffold38210 GLEAN mRNA 7747 30035 0.24289 - . ID=CGI_10002673; scaffold524 WUBlastX LINE_L2 450511 450819 133 - . . scaffold524 GLEAN mRNA 445295 466161 1 + . ID=CGI_10016612; scaffold664 WUBlastX LTR_Ngaro 577896 578225 66 - . . scaffold664 GLEAN mRNA 547583 596494 0.239728 + . ID=CGI_10021456; scaffold276 WUBlastX DNA_IS4EU 25631 25855 23 + . . scaffold276 GLEAN mRNA 24613 26343 0.999985 + . ID=CGI_10006434; scaffold286 WUBlastX LTR_Gypsy 183393 183893 134 - . . scaffold286 GLEAN mRNA 182912 187198 0.775448 - . ID=CGI_10015964; scaffold138 WUBlastX LINE_L1-Tx1 27886 28029 90 - . . scaffold138 GLEAN mRNA 800 34081 0.879441 + . ID=CGI_10008423; scaffold364 WUBlastX LINE_RTE-X 51736 51981 118 - . . scaffold364 GLEAN mRNA 18377 81368 0.812692 + . ID=CGI_10022675; scaffold117 WUBlastX DNA_Harbinger 37096 37284 26 - . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold37532 WUBlastX LTR_Gypsy 41147 41917 142 + . . scaffold37532 GLEAN mRNA 24867 43092 0.82218 + . ID=CGI_10002401; scaffold43660 WUBlastX LINE_Penelope 127145 127231 22 - . . scaffold43660 GLEAN mRNA 125748 138289 0.998274 + . ID=CGI_10011663; scaffold43660 WUBlastX LINE_Penelope 127434 127820 55 - . . scaffold43660 GLEAN mRNA 125748 138289 0.998274 + . ID=CGI_10011663; scaffold1315 WUBlastX LINE_Penelope 688722 689033 63 - . . scaffold1315 GLEAN mRNA 688539 696190 0.999948 - . ID=CGI_10021627; scaffold38934 WUBlastX DNA_Kolobok 44941 45171 38 + . . scaffold38934 GLEAN mRNA 26982 47955 0.375661 + . ID=CGI_10003097; scaffold833 WUBlastX LTR_Gypsy 368618 370177 1023 - . . scaffold833 GLEAN mRNA 336322 390734 0.191045 + . ID=CGI_10016744; scaffold1221 WUBlastX LTR_Gypsy-Cigr 66770 67009 93 - . . scaffold1221 GLEAN mRNA 56411 69596 0.696179 + . ID=CGI_10019728; scaffold86 WUBlastX LTR_Pao 205367 205690 102 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold828 WUBlastX DNA_TcMar-Tc2 58405 59322 143 - . . scaffold828 GLEAN mRNA 15085 78014 0.596994 - . ID=CGI_10007364; scaffold20 WUBlastX LINE_RTE-X 30214 30672 92 + . . scaffold20 GLEAN mRNA 25974 32204 0.614933 - . ID=CGI_10023556; scaffold20 WUBlastX LINE_RTE-X 30214 30672 92 + . . scaffold20 GLEAN mRNA 28495 32289 0.880534 + . ID=CGI_10023557; scaffold925 WUBlastX LTR_DIRS 141226 142380 729 - . . scaffold925 GLEAN mRNA 124334 157225 0.393067 - . ID=CGI_10017412; scaffold57 WUBlastX LINE_CR1 379418 379747 55 - . . scaffold57 GLEAN mRNA 361110 382565 0.943475 + . ID=CGI_10020552; scaffold57 WUBlastX LINE_CR1 379418 379747 55 - . . scaffold57 GLEAN mRNA 361168 396087 0.322076 - . ID=CGI_10020553; scaffold450 WUBlastX LTR_DIRS 111724 111993 154 + . . scaffold450 GLEAN mRNA 106099 115995 0.996213 - . ID=CGI_10010321; scaffold459 WUBlastX DNA_TcMar-Marin 137384 137455 31 - . . scaffold459 GLEAN mRNA 130507 139915 0.650578 - . ID=CGI_10018170; scaffold459 WUBlastX DNA_TcMar-Marin 137523 137792 84 - . . scaffold459 GLEAN mRNA 130507 139915 0.650578 - . ID=CGI_10018170; scaffold1611 WUBlastX DNA_TcMar-Fot1 364953 365444 83 - . . scaffold1611 GLEAN mRNA 361117 373640 0.975667 + . ID=CGI_10014334; scaffold184 WUBlastX DNA_TcMar-Tc1 194545 194868 117 + . . scaffold184 GLEAN mRNA 186538 196154 0.912721 - . ID=CGI_10014797; scaffold658 WUBlastX LINE_RTE-BovB 232459 232632 181 - . . scaffold658 GLEAN mRNA 228316 233174 0.37443 + . ID=CGI_10018968; scaffold400 WUBlastX DNA_Sola 288120 289382 53 + . . scaffold400 GLEAN mRNA 275762 290092 0.47452 - . ID=CGI_10011441; scaffold1836 WUBlastX LTR_Gypsy 1025204 1025527 232 - . . scaffold1836 GLEAN mRNA 1025204 1064430 0.980298 - . ID=CGI_10026321; scaffold44008 WUBlastX DNA_hAT-Tip100 353896 354108 97 + . . scaffold44008 GLEAN mRNA 353787 363820 0.499838 + . ID=CGI_10015300; scaffold630 WUBlastX LINE_L1-Tx1 349669 350712 183 - . . scaffold630 GLEAN mRNA 340806 353631 0.861539 - . ID=CGI_10018332; scaffold630 WUBlastX LINE_L1-Tx1 350700 351287 296 - . . scaffold630 GLEAN mRNA 340806 353631 0.861539 - . ID=CGI_10018332; scaffold630 WUBlastX LINE_L1-Tx1 351256 351963 527 - . . scaffold630 GLEAN mRNA 340806 353631 0.861539 - . ID=CGI_10018332; scaffold632 WUBlastX LINE_RTE-X 274425 275033 124 + . . scaffold632 GLEAN mRNA 271859 278767 0.999129 + . ID=CGI_10018450; scaffold1880 WUBlastX LINE_RTE-X 51551 54814 926 + . . scaffold1880 GLEAN mRNA 5602 92195 0.383639 - . ID=CGI_10008204; scaffold507 WUBlastX DNA_Academ 492336 492426 35 + . . scaffold507 GLEAN mRNA 492046 492426 0.51402 + . ID=CGI_10019104; scaffold507 WUBlastX DNA_Academ 492575 493705 632 + . . scaffold507 GLEAN mRNA 492575 493705 0.26572 + . ID=CGI_10019105; scaffold1087 WUBlastX LTR_Gypsy 14977 15588 529 + . . scaffold1087 GLEAN mRNA 1458 16224 0.544547 + . ID=CGI_10001183; scaffold128 WUBlastX DNA_TcMar-Tc1 87026 87388 74 + . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; scaffold128 WUBlastX DNA_TcMar-Tc1 87402 87593 113 + . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; scaffold36598 WUBlastX DNA_Kolobok-IS4 12817 13545 130 - . . scaffold36598 GLEAN mRNA 10870 17380 0.999993 + . ID=CGI_10002012; scaffold1616 WUBlastX LINE_Penelope 60431 60730 46 - . . scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; scaffold163 WUBlastX LTR_Gypsy 490792 490881 69 + . . scaffold163 GLEAN mRNA 485695 492043 0.810494 + . ID=CGI_10018630; scaffold38884 WUBlastX LTR_DIRS 45866 46405 241 + . . scaffold38884 GLEAN mRNA 44613 50381 1 - . ID=CGI_10003004; scaffold38884 WUBlastX LTR_DIRS 46854 47921 688 + . . scaffold38884 GLEAN mRNA 44613 50381 1 - . ID=CGI_10003004; scaffold38884 WUBlastX LTR_DIRS 47899 48540 359 + . . scaffold38884 GLEAN mRNA 44613 50381 1 - . ID=CGI_10003004; scaffold1399 WUBlastX LTR_DIRS 118333 120354 1398 - . . scaffold1399 GLEAN mRNA 95731 121782 0.470575 + . ID=CGI_10007050; scaffold1018 WUBlastX LTR_Gypsy 552694 552906 30 - . . scaffold1018 GLEAN mRNA 547902 567181 0.39343 + . ID=CGI_10019779; scaffold580 WUBlastX LTR_Pao 543245 543373 59 - . . scaffold580 GLEAN mRNA 534985 547949 0.999377 + . ID=CGI_10020515; scaffold298 WUBlastX LINE_L2 518895 519536 108 + . . scaffold298 GLEAN mRNA 501146 527362 0.635848 + . ID=CGI_10018836; scaffold1101 WUBlastX LINE_RTE-X 148275 148484 50 - . . scaffold1101 GLEAN mRNA 141921 154245 0.479315 + . ID=CGI_10023014; scaffold828 WUBlastX DNA_TcMar-Tc2 58591 59280 197 - . . scaffold828 GLEAN mRNA 15085 78014 0.596994 - . ID=CGI_10007364; scaffold1788 WUBlastX LINE_L1 47120 47644 162 + . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold896 WUBlastX LINE_RTE-X 437261 437575 80 - . . scaffold896 GLEAN mRNA 429849 443777 0.584747 + . ID=CGI_10022849; scaffold896 WUBlastX LINE_RTE-X 437261 437575 80 - . . scaffold896 GLEAN mRNA 434715 450263 0.551142 - . ID=CGI_10022850; scaffold1558 WUBlastX LINE_L1-Tx1 41047 41346 34 - . . scaffold1558 GLEAN mRNA 34398 73907 0.517269 - . ID=CGI_10004094; scaffold156 WUBlastX LINE_CR1-L2 723395 723448 33 + . . scaffold156 GLEAN mRNA 716803 736043 0.463925 - . ID=CGI_10026517; scaffold1469 WUBlastX DNA_Zator 331240 334059 1412 + . . scaffold1469 GLEAN mRNA 328132 363409 0.937512 - . ID=CGI_10015428; scaffold1469 WUBlastX DNA_Zator 334210 334389 64 + . . scaffold1469 GLEAN mRNA 328132 363409 0.937512 - . ID=CGI_10015428; scaffold1469 WUBlastX DNA_Zator 334853 335020 51 + . . scaffold1469 GLEAN mRNA 328132 363409 0.937512 - . ID=CGI_10015428; scaffold364 WUBlastX DNA_Zator 308971 309138 54 - . . scaffold364 GLEAN mRNA 307244 318990 0.924605 - . ID=CGI_10022689; scaffold364 WUBlastX DNA_Zator 309609 309788 57 - . . scaffold364 GLEAN mRNA 307244 318990 0.924605 - . ID=CGI_10022689; scaffold364 WUBlastX DNA_Zator 309939 312758 1396 - . . scaffold364 GLEAN mRNA 307244 318990 0.924605 - . ID=CGI_10022689; scaffold58 WUBlastX LTR_Gypsy 568350 570650 1349 - . . scaffold58 GLEAN mRNA 565797 572122 0.982335 - . ID=CGI_10023152; scaffold58 WUBlastX LTR_Gypsy 568350 570650 1349 - . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; scaffold867 WUBlastX LINE_L1-Tx1 4110 4976 78 + . . scaffold867 GLEAN mRNA 3265 13655 0.999351 + . ID=CGI_10026210; scaffold39900 WUBlastX DNA_Maverick 69640 70179 369 - . . scaffold39900 GLEAN mRNA 63800 72994 0.885101 + . ID=CGI_10003685; scaffold406 WUBlastX LTR_Gypsy 63254 63901 207 - . . scaffold406 GLEAN mRNA 63105 78647 0.760341 - . ID=CGI_10023839; scaffold1423 WUBlastX DNA_Harbinger 672954 673139 63 + . . scaffold1423 GLEAN mRNA 653919 675880 0.821976 - . ID=CGI_10025436; scaffold522 WUBlastX LTR_Gypsy 556195 556488 119 - . . scaffold522 GLEAN mRNA 555460 561290 0.999999 + . ID=CGI_10020338; scaffold1670 WUBlastX LINE_L1 465359 465640 108 - . . scaffold1670 GLEAN mRNA 448842 475285 0.99939 + . ID=CGI_10017627; scaffold601 WUBlastX LINE_L1-Tx1 374856 377222 1398 + . . scaffold601 GLEAN mRNA 357849 378829 0.543194 + . ID=CGI_10026822; scaffold601 WUBlastX LINE_L1-Tx1 377228 378025 191 + . . scaffold601 GLEAN mRNA 357849 378829 0.543194 + . ID=CGI_10026822; scaffold1670 WUBlastX LINE_CR1 398454 398639 29 + . . scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; scaffold1643 WUBlastX LTR_Pao 105628 105996 219 + . . scaffold1643 GLEAN mRNA 104668 107388 0.99993 + . ID=CGI_10008364; scaffold1532 WUBlastX LTR_Ngaro 1133313 1133585 37 - . . scaffold1532 GLEAN mRNA 1127066 1152811 0.992288 + . ID=CGI_10028283; scaffold1094 WUBlastX LINE_L1-Tx1 624720 625223 140 + . . scaffold1094 GLEAN mRNA 609558 640373 0.531771 - . ID=CGI_10021838; scaffold1094 WUBlastX LINE_L1-Tx1 625243 625359 64 + . . scaffold1094 GLEAN mRNA 609558 640373 0.531771 - . ID=CGI_10021838; scaffold631 WUBlastX LINE_RTE-X 224940 225005 42 + . . scaffold631 GLEAN mRNA 219246 234334 0.970776 - . ID=CGI_10014178; scaffold241 WUBlastX LTR_Pao 82470 83048 321 + . . scaffold241 GLEAN mRNA 81964 102317 0.534439 + . ID=CGI_10025091; scaffold534 WUBlastX LTR_Gypsy 67864 68220 113 - . . scaffold534 GLEAN mRNA 66095 75550 0.716363 + . ID=CGI_10005164; scaffold1423 WUBlastX DNA_Harbinger 672131 672466 116 + . . scaffold1423 GLEAN mRNA 653919 675880 0.821976 - . ID=CGI_10025436; C34856 WUBlastX LTR_Gypsy-Cigr 8836 9372 42 + . . C34856 GLEAN mRNA 131 10544 0.998639 + . ID=CGI_10001362; scaffold210 WUBlastX LTR_Ngaro 226235 226327 20 + . . scaffold210 GLEAN mRNA 223042 231005 0.552757 + . ID=CGI_10015889; scaffold933 WUBlastX DNA_En-Spm 442961 443089 45 - . . scaffold933 GLEAN mRNA 438762 447503 0.391135 + . ID=CGI_10016727; scaffold43686 WUBlastX LTR_Gypsy 187639 188076 108 - . . scaffold43686 GLEAN mRNA 172665 193661 0.978405 - . ID=CGI_10011758; scaffold43008 WUBlastX LTR_Gypsy 29007 33062 2124 - . . scaffold43008 GLEAN mRNA 18841 33811 0.999674 - . ID=CGI_10008458; scaffold976 WUBlastX LTR_Gypsy 43785 43937 27 - . . scaffold976 GLEAN mRNA 40652 60127 0.884558 - . ID=CGI_10014002; scaffold1097 WUBlastX LTR_Gypsy 861518 861784 102 + . . scaffold1097 GLEAN mRNA 848149 863853 0.999116 + . ID=CGI_10024555; scaffold490 WUBlastX DNA_TcMar-Fot1 116502 117134 139 - . . scaffold490 GLEAN mRNA 110595 119533 0.717521 + . ID=CGI_10009162; scaffold1213 WUBlastX LINE_L1-Tx1 419988 420200 92 + . . scaffold1213 GLEAN mRNA 408300 423198 0.400191 - . ID=CGI_10027450; scaffold1753 WUBlastX LINE_L1-Tx1 266270 266488 46 - . . scaffold1753 GLEAN mRNA 261922 275452 0.949513 - . ID=CGI_10010811; scaffold113 WUBlastX LINE_CR1 616962 617630 248 - . . scaffold113 GLEAN mRNA 609492 622798 0.993341 - . ID=CGI_10021297; scaffold716 WUBlastX LTR_Ngaro 329454 330194 198 + . . scaffold716 GLEAN mRNA 317907 344001 0.842692 + . ID=CGI_10014452; scaffold1024 WUBlastX LTR_Ngaro 1700980 1701720 199 + . . scaffold1024 GLEAN mRNA 1693215 1725420 0.440752 - . ID=CGI_10028584; scaffold794 WUBlastX DNA_TcMar-Fot1 394813 395082 56 - . . scaffold794 GLEAN mRNA 378971 426999 0.796099 - . ID=CGI_10017158; scaffold406 WUBlastX DNA_MuDR 413964 415016 190 - . . scaffold406 GLEAN mRNA 402781 436007 0.999901 + . ID=CGI_10023847; scaffold1532 WUBlastX LTR_Ngaro 641072 641425 153 + . . scaffold1532 GLEAN mRNA 638492 642462 0.995183 + . ID=CGI_10028264; scaffold1262 WUBlastX DNA_IS4EU 511675 511815 29 + . . scaffold1262 GLEAN mRNA 503446 523698 0.999351 - . ID=CGI_10018956; scaffold191 WUBlastX LINE_CR1-L2 181760 182359 243 + . . scaffold191 GLEAN mRNA 173889 184742 0.717223 - . ID=CGI_10022414; scaffold406 WUBlastX LTR_Gypsy 63946 64110 49 - . . scaffold406 GLEAN mRNA 63105 78647 0.760341 - . ID=CGI_10023839; scaffold209 WUBlastX DNA_TcMar-Tc1 261772 262245 146 + . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold828 WUBlastX LTR_Gypsy 96257 97891 216 - . . scaffold828 GLEAN mRNA 93404 108093 0.999999 - . ID=CGI_10007366; scaffold1715 WUBlastX LTR_Gypsy-Cigr 444521 445141 326 + . . scaffold1715 GLEAN mRNA 440859 458026 0.998814 + . ID=CGI_10019678; scaffold43986 WUBlastX LTR_Pao 391883 392725 61 - . . scaffold43986 GLEAN mRNA 386684 393718 0.985724 - . ID=CGI_10015036; scaffold143 WUBlastX LTR_Gypsy 19430 19747 63 - . . scaffold143 GLEAN mRNA 16958 23785 0.985197 + . ID=CGI_10010006; scaffold143 WUBlastX LTR_Gypsy 19806 20975 1055 - . . scaffold143 GLEAN mRNA 16958 23785 0.985197 + . ID=CGI_10010006; scaffold143 WUBlastX LTR_Gypsy 20900 22741 1581 - . . scaffold143 GLEAN mRNA 16958 23785 0.985197 + . ID=CGI_10010006; scaffold773 WUBlastX LTR_Gypsy 266819 266980 56 + . . scaffold773 GLEAN mRNA 235107 267865 0.138953 - . ID=CGI_10011348; scaffold1323 WUBlastX DNA_MuDR 70380 71000 140 - . . scaffold1323 GLEAN mRNA 62759 90642 0.99865 + . ID=CGI_10009082; scaffold38130 WUBlastX DNA_Maverick 27372 27998 296 - . . scaffold38130 GLEAN mRNA 25137 30326 0.998369 - . ID=CGI_10002636; C35840 WUBlastX DNA_Harbinger 655 825 32 - . . C35840 GLEAN mRNA 655 3933 0.500738 - . ID=CGI_10001630; C35840 WUBlastX DNA_Harbinger 1285 1554 194 - . . C35840 GLEAN mRNA 655 3933 0.500738 - . ID=CGI_10001630; C35840 WUBlastX DNA_Harbinger 1641 1814 76 - . . C35840 GLEAN mRNA 655 3933 0.500738 - . ID=CGI_10001630; scaffold1708 WUBlastX LINE_L2 6993 8771 233 - . . scaffold1708 GLEAN mRNA 6391 9576 0.777526 + . ID=CGI_10005574; scaffold773 WUBlastX DNA_Crypton 15163 15624 161 - . . scaffold773 GLEAN mRNA 9303 18869 0.52374 - . ID=CGI_10011341; scaffold773 WUBlastX DNA_Crypton 15685 15855 64 - . . scaffold773 GLEAN mRNA 9303 18869 0.52374 - . ID=CGI_10011341; scaffold773 WUBlastX DNA_Crypton 16216 16575 110 - . . scaffold773 GLEAN mRNA 9303 18869 0.52374 - . ID=CGI_10011341; scaffold334 WUBlastX LINE_L1-Tx1 1046073 1046276 28 + . . scaffold334 GLEAN mRNA 1033963 1069994 0.961302 - . ID=CGI_10025971; scaffold354 WUBlastX LINE_L2 488456 488821 99 - . . scaffold354 GLEAN mRNA 486223 493126 0.637462 - . ID=CGI_10025720; scaffold917 WUBlastX DNA_Sola 135213 135728 155 + . . scaffold917 GLEAN mRNA 121193 151265 0.227919 + . ID=CGI_10011083; scaffold36140 WUBlastX LINE_CR1 10088 10237 32 - . . scaffold36140 GLEAN mRNA 6624 23811 0.998174 + . ID=CGI_10001795; scaffold41242 WUBlastX LINE_L1-Tx1 100537 100785 104 + . . scaffold41242 GLEAN mRNA 97496 109439 0.170639 - . ID=CGI_10004889; scaffold41242 WUBlastX LINE_L1-Tx1 101942 102304 21 + . . scaffold41242 GLEAN mRNA 97496 109439 0.170639 - . ID=CGI_10004889; scaffold40134 WUBlastX DNA_Maverick 43116 43736 389 - . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold952 WUBlastX DNA_TcMar-Tc1 17102 17869 273 - . . scaffold952 GLEAN mRNA 12544 26052 0.999676 + . ID=CGI_10002898; scaffold43538 WUBlastX LTR_Gypsy 32012 32215 42 + . . scaffold43538 GLEAN mRNA 31086 35366 0.988787 - . ID=CGI_10010813; scaffold1148 WUBlastX DNA_TcMar-Tc1 161604 161711 35 - . . scaffold1148 GLEAN mRNA 158300 165919 0.858513 + . ID=CGI_10008249; scaffold1525 WUBlastX LINE_L1-Tx1 39852 40067 39 + . . scaffold1525 GLEAN mRNA 22768 58796 0.21079 + . ID=CGI_10013853; scaffold1831 WUBlastX LINE_RTE-X 24109 24990 150 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold815 WUBlastX LINE_RTE-X 8899 9399 116 + . . scaffold815 GLEAN mRNA 3623 27508 0.999835 - . ID=CGI_10001932; scaffold815 WUBlastX LINE_RTE-X 11395 11673 47 + . . scaffold815 GLEAN mRNA 3623 27508 0.999835 - . ID=CGI_10001932; scaffold412 WUBlastX LINE_L1 143736 144794 423 + . . scaffold412 GLEAN mRNA 141227 160730 0.499998 - . ID=CGI_10018560; scaffold1174 WUBlastX DNA_TcMar-Fot1 1089703 1090089 217 + . . scaffold1174 GLEAN mRNA 1080209 1093364 0.548358 + . ID=CGI_10026081; scaffold1004 WUBlastX LINE_Penelope 281675 282493 332 + . . scaffold1004 GLEAN mRNA 274842 298566 0.682505 - . ID=CGI_10020767; scaffold1004 WUBlastX LINE_Penelope 282628 283137 68 + . . scaffold1004 GLEAN mRNA 274842 298566 0.682505 - . ID=CGI_10020767; scaffold1149 WUBlastX LINE_RTE-X 218465 219424 354 + . . scaffold1149 GLEAN mRNA 215463 220751 0.999395 - . ID=CGI_10023460; scaffold1526 WUBlastX DNA_TcMar-Tc2 88175 89098 436 - . . scaffold1526 GLEAN mRNA 83330 93705 0.632332 - . ID=CGI_10006187; scaffold1323 WUBlastX LTR_Ngaro 76762 76821 42 - . . scaffold1323 GLEAN mRNA 62759 90642 0.99865 + . ID=CGI_10009082; scaffold43302 WUBlastX DNA_PiggyBac 59252 59986 144 + . . scaffold43302 GLEAN mRNA 44692 96293 0.992844 + . ID=CGI_10009758; scaffold632 WUBlastX LINE_L2 512605 512808 38 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold481 WUBlastX LTR_Gypsy 1218051 1219280 299 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold1741 WUBlastX DNA_Kolobok 813537 813716 77 - . . scaffold1741 GLEAN mRNA 804296 818884 1 - . ID=CGI_10024052; scaffold305 WUBlastX LINE_L1 139902 140642 263 + . . scaffold305 GLEAN mRNA 133464 157357 0.544675 - . ID=CGI_10019118; scaffold305 WUBlastX LINE_L1 140867 141076 47 + . . scaffold305 GLEAN mRNA 133464 157357 0.544675 - . ID=CGI_10019118; scaffold41346 WUBlastX DNA_TcMar-Marin 17676 18080 234 - . . scaffold41346 GLEAN mRNA 15464 31699 0.862252 + . ID=CGI_10004998; scaffold40512 WUBlastX DNA_Kolobok-IS4 55381 55599 68 - . . scaffold40512 GLEAN mRNA 32163 58255 0.783329 + . ID=CGI_10004193; scaffold1101 WUBlastX LINE_RTE-X 525636 526922 236 - . . scaffold1101 GLEAN mRNA 521845 536003 0.859729 + . ID=CGI_10023031; scaffold1808 WUBlastX DNA_Kolobok-IS4 136802 137083 71 + . . scaffold1808 GLEAN mRNA 136787 137128 1 + . ID=CGI_10008031; scaffold1214 WUBlastX LTR_Ngaro 250444 250734 206 - . . scaffold1214 GLEAN mRNA 241265 253884 0.274712 + . ID=CGI_10015480; scaffold39972 WUBlastX LINE_L1-Tx1 41405 41797 173 + . . scaffold39972 GLEAN mRNA 35765 49275 0.995966 + . ID=CGI_10003708; scaffold1583 WUBlastX DNA_Maverick 756798 756862 593 - . . scaffold1583 GLEAN mRNA 756798 766988 0.512265 - . ID=CGI_10025840; scaffold1749 WUBlastX DNA_Maverick 109577 109813 130 + . . scaffold1749 GLEAN mRNA 104860 117950 0.57225 + . ID=CGI_10008256; scaffold1749 WUBlastX DNA_Maverick 108579 108878 197 + . . scaffold1749 GLEAN mRNA 104860 117950 0.57225 + . ID=CGI_10008256; scaffold1749 WUBlastX DNA_Maverick 108963 109409 334 + . . scaffold1749 GLEAN mRNA 104860 117950 0.57225 + . ID=CGI_10008256; scaffold457 WUBlastX LINE_RTE-BovB 365430 366185 404 + . . scaffold457 GLEAN mRNA 365264 371451 0.499678 - . ID=CGI_10014542; scaffold457 WUBlastX LINE_RTE-BovB 366622 366912 232 + . . scaffold457 GLEAN mRNA 365264 371451 0.499678 - . ID=CGI_10014542; scaffold292 WUBlastX LINE_L1-Tx1 7432 7944 241 + . . scaffold292 GLEAN mRNA 5287 26747 0.497399 + . ID=CGI_10003526; scaffold1771 WUBlastX LTR_Gypsy 94348 95061 72 - . . scaffold1771 GLEAN mRNA 88638 95441 0.521534 - . ID=CGI_10004387; scaffold41660 WUBlastX LINE_L1-Tx1 109683 109904 64 - . . scaffold41660 GLEAN mRNA 108736 121603 0.999676 + . ID=CGI_10005401; scaffold301 WUBlastX DNA_Sola 950973 951137 27 - . . scaffold301 GLEAN mRNA 935860 957762 0.976661 - . ID=CGI_10026737; scaffold301 WUBlastX DNA_Sola 951253 951420 61 - . . scaffold301 GLEAN mRNA 935860 957762 0.976661 - . ID=CGI_10026737; scaffold301 WUBlastX DNA_Sola 951533 951730 127 - . . scaffold301 GLEAN mRNA 935860 957762 0.976661 - . ID=CGI_10026737; scaffold301 WUBlastX DNA_Sola 952012 953301 619 - . . scaffold301 GLEAN mRNA 935860 957762 0.976661 - . ID=CGI_10026737; scaffold1440 WUBlastX LTR_Pao 39483 40415 877 + . . scaffold1440 GLEAN mRNA 38192 43331 1 - . ID=CGI_10008353; scaffold368 WUBlastX LTR_Gypsy 489954 491180 421 - . . scaffold368 GLEAN mRNA 456734 493375 0.348019 + . ID=CGI_10018714; scaffold1771 WUBlastX LTR_Gypsy 94273 95229 48 - . . scaffold1771 GLEAN mRNA 88638 95441 0.521534 - . ID=CGI_10004387; scaffold581 WUBlastX LINE_L1-Tx1 17253 17987 177 + . . scaffold581 GLEAN mRNA 8702 32094 0.999834 - . ID=CGI_10013733; scaffold581 WUBlastX LINE_L1-Tx1 18255 18542 279 + . . scaffold581 GLEAN mRNA 8702 32094 0.999834 - . ID=CGI_10013733; scaffold581 WUBlastX LINE_L1-Tx1 18539 19306 267 + . . scaffold581 GLEAN mRNA 8702 32094 0.999834 - . ID=CGI_10013733; scaffold94 WUBlastX LTR_Gypsy 64327 64476 33 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold1462 WUBlastX LINE_L2 159567 159827 25 - . . scaffold1462 GLEAN mRNA 126068 169270 0.382353 + . ID=CGI_10014372; scaffold1832 WUBlastX LINE_L2 329912 330151 48 + . . scaffold1832 GLEAN mRNA 329015 334644 0.923451 + . ID=CGI_10018478; scaffold35162 WUBlastX DNA_Crypton 19709 20329 62 - . . scaffold35162 GLEAN mRNA 16160 20596 0.996194 - . ID=CGI_10001426; scaffold226 WUBlastX LTR_Gypsy-Cigr 660663 661022 49 - . . scaffold226 GLEAN mRNA 638426 687523 0.559216 + . ID=CGI_10025370; scaffold53 WUBlastX DNA_En-Spm 1177611 1177637 20 + . . scaffold53 GLEAN mRNA 1177611 1179343 1 + . ID=CGI_10026703; scaffold43272 WUBlastX LTR_Gypsy 119926 120243 64 + . . scaffold43272 GLEAN mRNA 115202 130908 0.999617 - . ID=CGI_10009669; scaffold20 WUBlastX DNA_Harbinger 81217 81255 82 - . . scaffold20 GLEAN mRNA 48308 81255 0.673996 - . ID=CGI_10023561; scaffold1584 WUBlastX LINE_L1-Tx1 20863 20919 31 + . . scaffold1584 GLEAN mRNA 17588 32625 0.463442 - . ID=CGI_10015070; scaffold44054 WUBlastX DNA_Kolobok-Hyd 73388 73603 31 - . . scaffold44054 GLEAN mRNA 73135 76491 0.974222 - . ID=CGI_10016157; scaffold482 WUBlastX DNA_Kolobok-Hyd 42641 42871 40 + . . scaffold482 GLEAN mRNA 41454 43438 0.427398 + . ID=CGI_10010992; scaffold1616 WUBlastX LINE_L1-Tx1 72922 73506 31 - . . scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; scaffold888 WUBlastX LINE_L1-Tx1 149517 150029 26 - . . scaffold888 GLEAN mRNA 149355 164657 0.644782 - . ID=CGI_10013450; scaffold39696 WUBlastX DNA_TcMar-Fot1 44723 44962 24 - . . scaffold39696 GLEAN mRNA 41717 59740 0.990766 + . ID=CGI_10003524; scaffold772 WUBlastX LINE_Penelope 53469 53717 38 - . . scaffold772 GLEAN mRNA 32739 66911 0.999897 - . ID=CGI_10016575; scaffold772 WUBlastX LINE_Penelope 53783 53950 38 - . . scaffold772 GLEAN mRNA 32739 66911 0.999897 - . ID=CGI_10016575; scaffold992 WUBlastX LINE_RTE-X 32524 32829 23 + . . scaffold992 GLEAN mRNA 31527 46122 0.937041 - . ID=CGI_10007504; scaffold663 WUBlastX LINE_RTE-X 119232 119255 32 - . . scaffold663 GLEAN mRNA 112609 119255 0.999993 + . ID=CGI_10005265; scaffold72 WUBlastX LINE_RTE-X 154246 154458 26 + . . scaffold72 GLEAN mRNA 144323 162117 0.999415 + . ID=CGI_10017838; scaffold1751 WUBlastX LINE_RTE-X 15712 16134 24 + . . scaffold1751 GLEAN mRNA 1921 19795 0.705782 - . ID=CGI_10010082; scaffold219 WUBlastX LINE_RTE-X 291701 291937 68 + . . scaffold219 GLEAN mRNA 287966 300533 0.843729 - . ID=CGI_10016628; scaffold38464 WUBlastX LINE_RTE-X 29156 29284 88 - . . scaffold38464 GLEAN mRNA 29156 32869 1 - . ID=CGI_10002793; scaffold866 WUBlastX DNA_Sola 87388 87609 43 + . . scaffold866 GLEAN mRNA 85549 108844 0.993209 + . ID=CGI_10004749; scaffold1597 WUBlastX DNA_hAT-Tip100 3153 3533 23 - . . scaffold1597 GLEAN mRNA 296 3638 1 - . ID=CGI_10011762; scaffold1052 WUBlastX LINE_L2 74918 75502 53 - . . scaffold1052 GLEAN mRNA 59893 79725 0.988141 - . ID=CGI_10005470; scaffold43894 WUBlastX LINE_L2 321094 321300 44 + . . scaffold43894 GLEAN mRNA 321019 321303 0.997806 + . ID=CGI_10013894; scaffold1715 WUBlastX LTR_Gypsy 333262 333372 42 + . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold370 WUBlastX LTR_Gypsy 121472 121615 69 - . . scaffold370 GLEAN mRNA 114547 129313 0.7324 - . ID=CGI_10025524; scaffold962 WUBlastX LINE_L1 388140 388286 59 - . . scaffold962 GLEAN mRNA 387756 388286 0.492706 - . ID=CGI_10027645; scaffold962 WUBlastX LINE_L1 388389 388649 59 - . . scaffold962 GLEAN mRNA 388389 388649 0.981828 - . ID=CGI_10027646; scaffold41806 WUBlastX LINE_RTE-X 1466 1795 52 + . . scaffold41806 GLEAN mRNA 391 2493 0.999723 - . ID=CGI_10005641; scaffold1132 WUBlastX LINE_RTE-X 67941 68195 28 - . . scaffold1132 GLEAN mRNA 47693 94911 0.303068 - . ID=CGI_10023311; scaffold1743 WUBlastX LINE_RTE-X 49985 50233 59 + . . scaffold1743 GLEAN mRNA 46556 59343 0.501263 + . ID=CGI_10011653; scaffold143 WUBlastX LINE_RTE-X 147194 147349 25 - . . scaffold143 GLEAN mRNA 117664 149411 0.999949 + . ID=CGI_10010012; scaffold6 WUBlastX DNA_Sola 618746 618796 51 - . . scaffold6 GLEAN mRNA 613145 618796 0.999953 - . ID=CGI_10022330; scaffold38510 WUBlastX DNA_TcMar-Tc1 20636 20773 35 - . . scaffold38510 GLEAN mRNA 7470 20879 0.242516 - . ID=CGI_10002810; scaffold38510 WUBlastX DNA_TcMar-Tc1 20636 20773 35 - . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold1825 WUBlastX LINE_L2 166802 167023 51 - . . scaffold1825 GLEAN mRNA 165468 177148 0.695303 - . ID=CGI_10011147; scaffold885 WUBlastX LTR_DIRS 1017484 1017717 51 + . . scaffold885 GLEAN mRNA 1005329 1048267 0.991835 - . ID=CGI_10025234; scaffold1656 WUBlastX LTR_Ngaro 122252 122476 58 - . . scaffold1656 GLEAN mRNA 116802 126372 0.949613 - . ID=CGI_10006145; scaffold1656 WUBlastX LTR_Ngaro 122733 122861 78 - . . scaffold1656 GLEAN mRNA 116802 126372 0.949613 - . ID=CGI_10006145; scaffold1272 WUBlastX LTR_Ngaro 166458 166871 27 - . . scaffold1272 GLEAN mRNA 155957 203314 0.324986 - . ID=CGI_10008310; scaffold1232 WUBlastX LTR_Ngaro 62525 62833 44 + . . scaffold1232 GLEAN mRNA 53895 66601 0.999898 - . ID=CGI_10014987; scaffold43842 WUBlastX DNA_IS4EU 249984 250190 104 + . . scaffold43842 GLEAN mRNA 222782 252762 0.997279 - . ID=CGI_10013106; scaffold43842 WUBlastX DNA_IS4EU 249984 250190 104 + . . scaffold43842 GLEAN mRNA 238630 263260 0.526049 + . ID=CGI_10013107; scaffold38292 WUBlastX LTR_Gypsy 46272 46946 72 + . . scaffold38292 GLEAN mRNA 45996 48404 0.696819 + . ID=CGI_10002692; scaffold492 WUBlastX LINE_RTE-X 432745 432942 77 + . . scaffold492 GLEAN mRNA 430618 435399 1 - . ID=CGI_10024835; scaffold1209 WUBlastX LINE_RTE-X 20117 20191 27 - . . scaffold1209 GLEAN mRNA 16133 36287 0.961312 - . ID=CGI_10007964; scaffold363 WUBlastX DNA_Sola 276661 276813 106 - . . scaffold363 GLEAN mRNA 270812 292199 0.745243 - . ID=CGI_10019300; scaffold38374 WUBlastX LTR_Ngaro 8302 8436 65 + . . scaffold38374 GLEAN mRNA 8302 17987 0.957619 + . ID=CGI_10002746; scaffold43576 WUBlastX DNA_TcMar-Tigge 215851 216090 31 + . . scaffold43576 GLEAN mRNA 197837 232524 1 - . ID=CGI_10011134; scaffold1341 WUBlastX LINE_L1-Tx1 5529 5801 21 - . . scaffold1341 GLEAN mRNA 4451 30218 0.992186 + . ID=CGI_10004662; scaffold853 WUBlastX LINE_CR1 432575 432712 21 - . . scaffold853 GLEAN mRNA 427674 436320 0.99996 - . ID=CGI_10017516; scaffold117 WUBlastX LTR_Gypsy 382816 383238 100 + . . scaffold117 GLEAN mRNA 381424 383832 0.991601 + . ID=CGI_10016969; scaffold1173 WUBlastX DNA_TcMar-m44 69460 69720 77 + . . scaffold1173 GLEAN mRNA 66584 69723 1 + . ID=CGI_10005745; scaffold734 WUBlastX LINE_L2 21284 21394 21 - . . scaffold734 GLEAN mRNA 15567 24465 0.477862 - . ID=CGI_10003361; scaffold1018 WUBlastX LINE_RTE-X 262539 262754 23 - . . scaffold1018 GLEAN mRNA 242940 268764 0.606365 + . ID=CGI_10019762; scaffold226 WUBlastX LTR_DIRS 462406 462945 83 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold1315 WUBlastX DNA_Sola 30522 30689 81 + . . scaffold1315 GLEAN mRNA 24729 31202 0.999612 + . ID=CGI_10021591; scaffold610 WUBlastX DNA_Merlin 571776 572000 43 + . . scaffold610 GLEAN mRNA 570530 599736 0.974441 - . ID=CGI_10021131; scaffold40828 WUBlastX LTR_Gypsy 56836 57096 48 - . . scaffold40828 GLEAN mRNA 28348 61048 0.605765 + . ID=CGI_10004502; scaffold40440 WUBlastX LTR_Ngaro 54782 54988 56 + . . scaffold40440 GLEAN mRNA 51085 65707 0.320377 - . ID=CGI_10004144; scaffold40564 WUBlastX DNA_Harbinger 4889 5140 76 + . . scaffold40564 GLEAN mRNA 531 6175 0.983455 + . ID=CGI_10004206; scaffold1227 WUBlastX DNA_Kolobok-Hyd 210664 211233 65 + . . scaffold1227 GLEAN mRNA 209453 211287 0.982351 + . ID=CGI_10010056; scaffold317 WUBlastX DNA_MuDR 500226 500646 98 - . . scaffold317 GLEAN mRNA 500226 523403 0.473225 - . ID=CGI_10019359; scaffold1036 WUBlastX DNA_Maverick 205040 205228 48 - . . scaffold1036 GLEAN mRNA 202062 206192 0.444605 - . ID=CGI_10019953; scaffold672 WUBlastX LINE_RTE-BovB 15171 15458 88 + . . scaffold672 GLEAN mRNA 1455 17003 0.927273 - . ID=CGI_10021021; scaffold42788 WUBlastX DNA_TcMar-Tc1 67237 67758 49 + . . scaffold42788 GLEAN mRNA 24369 91602 0.998319 - . ID=CGI_10007754; scaffold43696 WUBlastX LTR_Gypsy 202859 203065 63 + . . scaffold43696 GLEAN mRNA 200896 208237 0.287333 + . ID=CGI_10011805; scaffold1792 WUBlastX LINE_CR1 262326 262535 111 + . . scaffold1792 GLEAN mRNA 252899 271519 0.999949 - . ID=CGI_10012749; scaffold1849 WUBlastX LINE_CR1 84213 85475 44 - . . scaffold1849 GLEAN mRNA 72001 111634 0.818968 - . ID=CGI_10015914; scaffold37206 WUBlastX DNA_Merlin 14884 15117 110 - . . scaffold37206 GLEAN mRNA 11134 25264 0.606704 + . ID=CGI_10002305; scaffold569 WUBlastX LTR_DIRS 40743 41144 99 + . . scaffold569 GLEAN mRNA 32554 62247 0.974978 + . ID=CGI_10009494; scaffold38466 WUBlastX DNA_Kolobok-Hyd 3880 4548 37 + . . scaffold38466 GLEAN mRNA 3170 4605 0.999675 + . ID=CGI_10002797; scaffold1532 WUBlastX LINE_Penelope 957875 958174 103 + . . scaffold1532 GLEAN mRNA 956349 969868 0.999878 + . ID=CGI_10028276; scaffold786 WUBlastX LINE_RTE-X 272521 272805 100 - . . scaffold786 GLEAN mRNA 267472 276923 0.985899 + . ID=CGI_10013705; scaffold506 WUBlastX LINE_L2 436077 436388 69 - . . scaffold506 GLEAN mRNA 427628 464588 0.39125 + . ID=CGI_10019276; scaffold42584 WUBlastX LINE_L2 100330 100734 47 + . . scaffold42584 GLEAN mRNA 87388 105090 0.998677 + . ID=CGI_10007309; scaffold162 WUBlastX LTR_Gypsy 271307 271792 117 - . . scaffold162 GLEAN mRNA 254328 277132 0.643433 - . ID=CGI_10014094; scaffold203 WUBlastX LINE_RTE-X 628143 628385 75 - . . scaffold203 GLEAN mRNA 599632 671214 0.810319 + . ID=CGI_10021081; scaffold31 WUBlastX LINE_L2 15327 16022 114 - . . scaffold31 GLEAN mRNA 7584 16133 0.792688 - . ID=CGI_10013551; scaffold315 WUBlastX LTR_Pao 204542 204925 101 - . . scaffold315 GLEAN mRNA 198637 213809 0.999922 + . ID=CGI_10020410; scaffold964 WUBlastX LTR_Ngaro 225294 225770 121 + . . scaffold964 GLEAN mRNA 212100 240231 0.999794 - . ID=CGI_10009735; scaffold1264 WUBlastX LINE_L1 37249 37773 38 + . . scaffold1264 GLEAN mRNA 25666 41185 0.612594 + . ID=CGI_10007170; scaffold43818 WUBlastX DNA_TcMar-Marin 276248 276805 125 + . . scaffold43818 GLEAN mRNA 259212 278747 0.997869 + . ID=CGI_10012774; scaffold1736 WUBlastX LINE_RTE-X 627053 627490 56 - . . scaffold1736 GLEAN mRNA 617815 628143 0.537791 - . ID=CGI_10020987; scaffold138 WUBlastX LINE_L1-Tx1 26236 26535 140 - . . scaffold138 GLEAN mRNA 800 34081 0.879441 + . ID=CGI_10008423; scaffold43526 WUBlastX LINE_L1-Tx1 42876 43286 70 + . . scaffold43526 GLEAN mRNA 36766 62971 0.985699 + . ID=CGI_10010784; scaffold272 WUBlastX LINE_CR1-L2 46182 46340 37 + . . scaffold272 GLEAN mRNA 32744 62954 0.999882 + . ID=CGI_10003057; scaffold19 WUBlastX LTR_DIRS 198198 198278 35 + . . scaffold19 GLEAN mRNA 192266 206861 0.651568 + . ID=CGI_10010840; scaffold43076 WUBlastX LTR_Gypsy 189596 189658 24 - . . scaffold43076 GLEAN mRNA 177922 191367 0.98946 - . ID=CGI_10008769; scaffold43076 WUBlastX LTR_Gypsy 189596 189658 24 - . . scaffold43076 GLEAN mRNA 186716 211039 0.795025 + . ID=CGI_10008770; scaffold1024 WUBlastX LINE_Jockey 71031 71579 128 + . . scaffold1024 GLEAN mRNA 70811 87216 0.389681 + . ID=CGI_10028519; scaffold1753 WUBlastX LINE_L1 266781 266906 53 - . . scaffold1753 GLEAN mRNA 261922 275452 0.949513 - . ID=CGI_10010811; scaffold1583 WUBlastX LINE_RTE-X 330557 330670 50 + . . scaffold1583 GLEAN mRNA 329253 340870 0.998703 - . ID=CGI_10025825; scaffold271 WUBlastX LINE_L1-Tx1 469276 469476 20 - . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold145 WUBlastX LTR_DIRS 1152612 1154594 780 + . . scaffold145 GLEAN mRNA 1139972 1169601 0.998984 + . ID=CGI_10026576; scaffold226 WUBlastX LTR_Ngaro 468026 468316 145 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold226 WUBlastX LTR_Ngaro 469207 469614 169 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold274 WUBlastX LTR_Gypsy 121189 121455 198 - . . scaffold274 GLEAN mRNA 114872 127603 0.900499 - . ID=CGI_10017014; scaffold274 WUBlastX LTR_Gypsy 121189 121455 198 - . . scaffold274 GLEAN mRNA 110645 138083 0.999675 + . ID=CGI_10017013; scaffold535 WUBlastX LINE_CR1-L2 565996 566232 157 + . . scaffold535 GLEAN mRNA 563508 572309 0.883286 + . ID=CGI_10020301; scaffold1476 WUBlastX LINE_CR1-L2 171114 171506 108 + . . scaffold1476 GLEAN mRNA 169615 179488 0.862141 + . ID=CGI_10009826; scaffold43660 WUBlastX LINE_L2 134787 135029 87 + . . scaffold43660 GLEAN mRNA 125748 138289 0.998274 + . ID=CGI_10011663; scaffold265 WUBlastX LTR_Ngaro 69374 70069 143 - . . scaffold265 GLEAN mRNA 64182 72514 0.643455 - . ID=CGI_10003429; scaffold424 WUBlastX DNA_hAT-Ac 95241 95372 35 + . . scaffold424 GLEAN mRNA 91671 98594 0.990391 - . ID=CGI_10014353; scaffold37740 WUBlastX DNA_NOF 8222 8803 112 - . . scaffold37740 GLEAN mRNA 280 12182 0.630216 - . ID=CGI_10002468; scaffold1671 WUBlastX LINE_RTE-BovB 311070 311549 45 - . . scaffold1671 GLEAN mRNA 303116 311549 0.243132 + . ID=CGI_10015154; scaffold1210 WUBlastX LINE_RTE-X 219902 220240 438 - . . scaffold1210 GLEAN mRNA 219854 220240 0.999999 - . ID=CGI_10014605; scaffold36802 WUBlastX DNA_Academ 2993 3289 29 + . . scaffold36802 GLEAN mRNA 2993 3328 0.649473 + . ID=CGI_10002073; scaffold43008 WUBlastX DNA_Kolobok 54820 55011 86 + . . scaffold43008 GLEAN mRNA 53966 64440 0.597586 + . ID=CGI_10008461; scaffold351 WUBlastX DNA_Maverick 298878 298973 27 + . . scaffold351 GLEAN mRNA 298327 302475 0.747441 - . ID=CGI_10022603; scaffold621 WUBlastX LTR_Ngaro 304796 306352 1128 + . . scaffold621 GLEAN mRNA 265576 316930 0.261056 - . ID=CGI_10017677; scaffold925 WUBlastX LTR_Pao 128406 130037 628 + . . scaffold925 GLEAN mRNA 124334 157225 0.393067 - . ID=CGI_10017412; C33658 WUBlastX DNA_Sola 11681 12196 91 + . . C33658 GLEAN mRNA 10027 15037 0.499831 - . ID=CGI_10001113; scaffold40282 WUBlastX LTR_Gypsy 73114 73437 186 - . . scaffold40282 GLEAN mRNA 56091 83549 0.539379 + . ID=CGI_10004002; scaffold60 WUBlastX DNA_Academ 96941 97294 152 - . . scaffold60 GLEAN mRNA 96932 97333 0.999661 - . ID=CGI_10004686; scaffold392 WUBlastX LTR_Gypsy 35306 35866 78 - . . scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; scaffold392 WUBlastX LTR_Gypsy 35878 36018 82 - . . scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; scaffold39268 WUBlastX LINE_L2 17699 18346 132 + . . scaffold39268 GLEAN mRNA 16420 27530 0.768779 - . ID=CGI_10003274; scaffold1588 WUBlastX DNA_TcMar-m44 323503 323802 185 - . . scaffold1588 GLEAN mRNA 323254 325332 0.989218 - . ID=CGI_10014790; scaffold1737 WUBlastX LINE_RTE-X 462111 462188 24 - . . scaffold1737 GLEAN mRNA 447854 462520 0.999999 + . ID=CGI_10018255; scaffold38492 WUBlastX DNA_TcMar-Tc2 22752 23627 214 - . . scaffold38492 GLEAN mRNA 22581 25357 0.777277 - . ID=CGI_10002800; scaffold42880 WUBlastX LINE_L1 185992 188925 1100 + . . scaffold42880 GLEAN mRNA 184633 197786 1 - . ID=CGI_10007998; scaffold1574 WUBlastX LTR_Gypsy 452681 453022 47 + . . scaffold1574 GLEAN mRNA 452128 459537 0.999957 + . ID=CGI_10016335; scaffold40080 WUBlastX DNA_Harbinger 67611 67874 124 - . . scaffold40080 GLEAN mRNA 45524 71991 0.583639 - . ID=CGI_10003845; scaffold40080 WUBlastX DNA_Harbinger 67864 67983 23 - . . scaffold40080 GLEAN mRNA 45524 71991 0.583639 - . ID=CGI_10003845; scaffold42210 WUBlastX LINE_L1 103393 103527 28 + . . scaffold42210 GLEAN mRNA 98005 111760 0.591926 + . ID=CGI_10006389; scaffold942 WUBlastX LINE_Penelope 114740 115303 147 + . . scaffold942 GLEAN mRNA 113666 137722 0.300224 + . ID=CGI_10019154; scaffold962 WUBlastX LINE_RTE-X 1086423 1087097 96 - . . scaffold962 GLEAN mRNA 1078349 1089726 1 - . ID=CGI_10027683; scaffold94 WUBlastX LTR_Gypsy 65392 65769 248 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold94 WUBlastX LTR_Gypsy 66913 68427 582 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold36450 WUBlastX LINE_L2 21056 21697 92 - . . scaffold36450 GLEAN mRNA 18407 33594 0.503687 - . ID=CGI_10001980; scaffold934 WUBlastX DNA_En-Spm 284149 286428 1415 + . . scaffold934 GLEAN mRNA 282815 291724 0.901828 + . ID=CGI_10015447; scaffold113 WUBlastX DNA_MuDR 588527 588730 53 - . . scaffold113 GLEAN mRNA 582017 590807 0.980826 - . ID=CGI_10021294; scaffold42840 WUBlastX LINE_L2 188371 189366 105 + . . scaffold42840 GLEAN mRNA 176465 192129 0.833079 - . ID=CGI_10007840; scaffold41898 WUBlastX LTR_Gypsy 98452 99228 230 - . . scaffold41898 GLEAN mRNA 97771 99228 0.999846 - . ID=CGI_10005832; scaffold117 WUBlastX DNA_Kolobok 245737 245979 136 + . . scaffold117 GLEAN mRNA 233426 248341 0.648025 + . ID=CGI_10016961; scaffold479 WUBlastX LTR_Ngaro 424337 424792 119 + . . scaffold479 GLEAN mRNA 420249 425742 0.99319 + . ID=CGI_10015702; scaffold143 WUBlastX LINE_L1-Tx1 186896 187309 105 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold1860 WUBlastX LINE_L1-Tx1 97081 97206 38 - . . scaffold1860 GLEAN mRNA 86890 98787 0.482927 + . ID=CGI_10013940; scaffold1898 WUBlastX LTR_Pao 312140 312553 100 - . . scaffold1898 GLEAN mRNA 306186 312813 0.889712 + . ID=CGI_10012220; scaffold513 WUBlastX LTR_Pao 10699 11019 79 + . . scaffold513 GLEAN mRNA 2113 39536 0.917684 + . ID=CGI_10022134; scaffold1643 WUBlastX LTR_Pao 105040 106002 190 + . . scaffold1643 GLEAN mRNA 104668 107388 0.99993 + . ID=CGI_10008364; scaffold621 WUBlastX LTR_Ngaro 303940 304509 209 + . . scaffold621 GLEAN mRNA 265576 316930 0.261056 - . ID=CGI_10017677; scaffold41560 WUBlastX LINE_RTE-X 110175 110351 50 + . . scaffold41560 GLEAN mRNA 106439 114729 1 + . ID=CGI_10005285; scaffold37712 WUBlastX LTR_Gypsy 36429 36818 226 + . . scaffold37712 GLEAN mRNA 15194 37462 0.403354 - . ID=CGI_10002463; scaffold43648 WUBlastX DNA_Kolobok 232888 233013 73 + . . scaffold43648 GLEAN mRNA 231599 237776 0.973881 - . ID=CGI_10011593; scaffold847 WUBlastX LINE_RTE-X 281798 282160 108 - . . scaffold847 GLEAN mRNA 273681 282893 0.998253 - . ID=CGI_10022270; scaffold38510 WUBlastX DNA_Sola 28327 28410 28 + . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold1094 WUBlastX DNA_hAT 660058 660246 229 - . . scaffold1094 GLEAN mRNA 660055 663729 1 - . ID=CGI_10021840; scaffold1094 WUBlastX DNA_hAT 660058 660246 229 - . . scaffold1094 GLEAN mRNA 653693 668891 0.999236 + . ID=CGI_10021839; scaffold1094 WUBlastX DNA_hAT 660407 660637 257 - . . scaffold1094 GLEAN mRNA 660055 663729 1 - . ID=CGI_10021840; scaffold1094 WUBlastX DNA_hAT 660407 660637 257 - . . scaffold1094 GLEAN mRNA 653693 668891 0.999236 + . ID=CGI_10021839; scaffold1094 WUBlastX DNA_hAT 661027 661164 151 - . . scaffold1094 GLEAN mRNA 660055 663729 1 - . ID=CGI_10021840; scaffold1094 WUBlastX DNA_hAT 661027 661164 151 - . . scaffold1094 GLEAN mRNA 653693 668891 0.999236 + . ID=CGI_10021839; scaffold1094 WUBlastX DNA_hAT 661878 662102 273 - . . scaffold1094 GLEAN mRNA 660055 663729 1 - . ID=CGI_10021840; scaffold1094 WUBlastX DNA_hAT 661878 662102 273 - . . scaffold1094 GLEAN mRNA 653693 668891 0.999236 + . ID=CGI_10021839; scaffold1094 WUBlastX DNA_hAT 662405 662617 299 - . . scaffold1094 GLEAN mRNA 660055 663729 1 - . ID=CGI_10021840; scaffold1094 WUBlastX DNA_hAT 662405 662617 299 - . . scaffold1094 GLEAN mRNA 653693 668891 0.999236 + . ID=CGI_10021839; scaffold1094 WUBlastX DNA_hAT 662848 663012 170 - . . scaffold1094 GLEAN mRNA 660055 663729 1 - . ID=CGI_10021840; scaffold1094 WUBlastX DNA_hAT 662848 663012 170 - . . scaffold1094 GLEAN mRNA 653693 668891 0.999236 + . ID=CGI_10021839; scaffold1094 WUBlastX DNA_hAT 663211 663729 703 - . . scaffold1094 GLEAN mRNA 660055 663729 1 - . ID=CGI_10021840; scaffold1094 WUBlastX DNA_hAT 663211 663729 703 - . . scaffold1094 GLEAN mRNA 653693 668891 0.999236 + . ID=CGI_10021839; scaffold152 WUBlastX LINE_CR1 74536 74691 78 + . . scaffold152 GLEAN mRNA 60138 75351 0.999676 - . ID=CGI_10014894; scaffold257 WUBlastX LTR_DIRS 1605399 1605533 36 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold39358 WUBlastX DNA_IS4EU 37946 38419 268 + . . scaffold39358 GLEAN mRNA 36445 38443 0.716437 + . ID=CGI_10003326; scaffold368 WUBlastX LTR_Gypsy 490933 491892 212 - . . scaffold368 GLEAN mRNA 456734 493375 0.348019 + . ID=CGI_10018714; scaffold40916 WUBlastX LINE_L1-Tx1 39214 39924 493 + . . scaffold40916 GLEAN mRNA 5250 52256 0.246631 + . ID=CGI_10004570; scaffold40916 WUBlastX LINE_L1-Tx1 39960 42962 1372 + . . scaffold40916 GLEAN mRNA 5250 52256 0.246631 + . ID=CGI_10004570; scaffold517 WUBlastX LINE_L1 200099 200857 192 - . . scaffold517 GLEAN mRNA 188444 202746 0.541804 + . ID=CGI_10008984; scaffold1186 WUBlastX LTR_Pao 203702 203848 165 + . . scaffold1186 GLEAN mRNA 187396 222353 0.578632 + . ID=CGI_10010597; scaffold1174 WUBlastX LINE_L1 169577 170299 200 + . . scaffold1174 GLEAN mRNA 165948 193006 0.453368 - . ID=CGI_10026029; scaffold847 WUBlastX LTR_Gypsy 597366 597509 41 - . . scaffold847 GLEAN mRNA 588396 606136 0.840326 - . ID=CGI_10022283; scaffold689 WUBlastX LINE_RTE-X 169222 169749 71 + . . scaffold689 GLEAN mRNA 162763 181677 0.999 - . ID=CGI_10014826; scaffold347 WUBlastX LINE_CR1 129211 129528 105 + . . scaffold347 GLEAN mRNA 127096 135007 0.556255 - . ID=CGI_10021779; scaffold610 WUBlastX LTR_Gypsy 583945 584229 30 - . . scaffold610 GLEAN mRNA 570530 599736 0.974441 - . ID=CGI_10021131; scaffold43122 WUBlastX LTR_DIRS 139544 139816 46 + . . scaffold43122 GLEAN mRNA 115837 148634 0.68095 - . ID=CGI_10008940; scaffold43122 WUBlastX LTR_DIRS 139957 140142 110 + . . scaffold43122 GLEAN mRNA 115837 148634 0.68095 - . ID=CGI_10008940; scaffold43122 WUBlastX LTR_DIRS 140960 141328 119 + . . scaffold43122 GLEAN mRNA 115837 148634 0.68095 - . ID=CGI_10008940; scaffold43122 WUBlastX LTR_DIRS 141412 141546 23 + . . scaffold43122 GLEAN mRNA 115837 148634 0.68095 - . ID=CGI_10008940; scaffold619 WUBlastX DNA_hAT-Ac 487963 488073 53 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold39212 WUBlastX DNA_hAT-Tip100 53097 53489 35 - . . scaffold39212 GLEAN mRNA 30679 56961 0.415387 - . ID=CGI_10003233; scaffold39212 WUBlastX DNA_hAT-Tip100 54581 55246 264 - . . scaffold39212 GLEAN mRNA 30679 56961 0.415387 - . ID=CGI_10003233; scaffold42096 WUBlastX LINE_L2 108923 109411 154 + . . scaffold42096 GLEAN mRNA 96755 112781 0.947295 - . ID=CGI_10006165; scaffold42096 WUBlastX LINE_L2 108923 109411 154 + . . scaffold42096 GLEAN mRNA 106698 118966 0.999659 + . ID=CGI_10006166; scaffold230 WUBlastX DNA_hAT-Tip100 129566 129691 44 - . . scaffold230 GLEAN mRNA 126666 144461 0.534748 - . ID=CGI_10011251; scaffold29598 WUBlastX LINE_RTE-X 2770 3006 135 - . . scaffold29598 GLEAN mRNA 1487 5790 0.999943 - . ID=CGI_10000548; scaffold1583 WUBlastX LINE_RTE-X 323785 324345 144 - . . scaffold1583 GLEAN mRNA 302473 325169 0.82008 - . ID=CGI_10025823; scaffold38448 WUBlastX LTR_Ngaro 34755 34898 68 - . . scaffold38448 GLEAN mRNA 31492 37691 0.999937 + . ID=CGI_10002779; scaffold1551 WUBlastX LTR_Ngaro 75232 76029 280 + . . scaffold1551 GLEAN mRNA 48041 86336 0.263167 + . ID=CGI_10011471; scaffold695 WUBlastX LINE_L1-Tx1 89935 90108 47 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1-Tx1 89553 89888 173 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold1360 WUBlastX LINE_RTE-BovB 40203 40778 144 - . . scaffold1360 GLEAN mRNA 19050 50648 0.715639 + . ID=CGI_10022624; scaffold606 WUBlastX LINE_RTE-X 66955 67869 282 - . . scaffold606 GLEAN mRNA 64022 68108 0.70137 - . ID=CGI_10012940; scaffold177 WUBlastX LTR_Pao 385484 385687 21 + . . scaffold177 GLEAN mRNA 385460 386038 0.999998 + . ID=CGI_10016067; scaffold177 WUBlastX LTR_Pao 389629 389731 123 + . . scaffold177 GLEAN mRNA 389629 390416 0.987366 - . ID=CGI_10016068; scaffold619 WUBlastX DNA_hAT-hATw 951324 952010 106 + . . scaffold619 GLEAN mRNA 949722 959476 0.544338 - . ID=CGI_10025794; scaffold204 WUBlastX DNA_Harbinger 413254 413697 178 + . . scaffold204 GLEAN mRNA 394042 414406 0.339936 + . ID=CGI_10026106; scaffold204 WUBlastX DNA_Harbinger 413816 414070 217 + . . scaffold204 GLEAN mRNA 394042 414406 0.339936 + . ID=CGI_10026106; scaffold38976 WUBlastX LTR_Gypsy 7764 8096 39 - . . scaffold38976 GLEAN mRNA 801 15953 0.854638 + . ID=CGI_10003109; scaffold241 WUBlastX DNA_NOF 393582 393728 107 - . . scaffold241 GLEAN mRNA 380326 398675 0.495388 - . ID=CGI_10025102; scaffold241 WUBlastX DNA_NOF 394008 394316 266 - . . scaffold241 GLEAN mRNA 380326 398675 0.495388 - . ID=CGI_10025102; scaffold241 WUBlastX DNA_NOF 394664 394849 49 - . . scaffold241 GLEAN mRNA 380326 398675 0.495388 - . ID=CGI_10025102; scaffold815 WUBlastX LINE_RTE-X 7793 8050 37 + . . scaffold815 GLEAN mRNA 3623 27508 0.999835 - . ID=CGI_10001932; scaffold37430 WUBlastX LTR_Pao 37967 38206 34 - . . scaffold37430 GLEAN mRNA 25525 41907 0.539363 + . ID=CGI_10002358; scaffold1862 WUBlastX LINE_L1 190301 190933 177 + . . scaffold1862 GLEAN mRNA 170077 209119 0.953083 - . ID=CGI_10021893; scaffold425 WUBlastX DNA_IS4EU 138118 139476 466 - . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold858 WUBlastX LINE_CR1-L2 15114 15359 50 - . . scaffold858 GLEAN mRNA 10847 22761 0.93008 - . ID=CGI_10004935; scaffold335 WUBlastX LINE_L1-Tx1 382938 384443 347 - . . scaffold335 GLEAN mRNA 381520 394130 0.458743 - . ID=CGI_10017105; scaffold1750 WUBlastX LTR_Gypsy-Troyk 688423 689343 547 - . . scaffold1750 GLEAN mRNA 688402 691316 0.700377 - . ID=CGI_10021502; scaffold43708 WUBlastX LINE_CR1-L2 236971 237036 23 - . . scaffold43708 GLEAN mRNA 223509 253864 0.998643 + . ID=CGI_10011974; scaffold1750 WUBlastX LINE_RTE-BovB 104239 104784 564 - . . scaffold1750 GLEAN mRNA 103959 143562 0.754188 + . ID=CGI_10021469; scaffold1551 WUBlastX LTR_Ngaro 74744 75319 279 + . . scaffold1551 GLEAN mRNA 48041 86336 0.263167 + . ID=CGI_10011471; scaffold705 WUBlastX DNA_TcMar-Tc1 94049 94279 138 - . . scaffold705 GLEAN mRNA 93500 98506 0.711609 + . ID=CGI_10015500; scaffold705 WUBlastX DNA_TcMar-Tc1 94294 94770 241 - . . scaffold705 GLEAN mRNA 93500 98506 0.711609 + . ID=CGI_10015500; scaffold77 WUBlastX DNA_hAT-hATw 655939 657138 25 + . . scaffold77 GLEAN mRNA 654725 664026 0.999581 + . ID=CGI_10027987; scaffold980 WUBlastX LINE_RTE-X 77767 78126 80 - . . scaffold980 GLEAN mRNA 43953 80997 0.883179 - . ID=CGI_10019204; scaffold72 WUBlastX LINE_RTE-BovB 158535 159362 345 - . . scaffold72 GLEAN mRNA 144323 162117 0.999415 + . ID=CGI_10017838; scaffold1703 WUBlastX DNA_Maverick 221230 221904 393 - . . scaffold1703 GLEAN mRNA 215396 234951 0.309503 + . ID=CGI_10023049; scaffold1307 WUBlastX DNA_IS4EU 9655 10338 353 + . . scaffold1307 GLEAN mRNA 6251 45653 0.745308 + . ID=CGI_10023739; scaffold1307 WUBlastX DNA_IS4EU 10951 11217 169 + . . scaffold1307 GLEAN mRNA 6251 45653 0.745308 + . ID=CGI_10023739; scaffold41372 WUBlastX LINE_L1-Tx1 70120 70290 28 - . . scaffold41372 GLEAN mRNA 67893 79286 0.261998 + . ID=CGI_10005012; scaffold43782 WUBlastX LINE_RTE-X 113190 113471 182 - . . scaffold43782 GLEAN mRNA 102494 129639 0.999947 + . ID=CGI_10012366; scaffold43358 WUBlastX LTR_Gypsy 133879 134802 708 + . . scaffold43358 GLEAN mRNA 123775 136005 0.949704 + . ID=CGI_10009976; scaffold1321 WUBlastX LTR_Gypsy 160312 161376 736 - . . scaffold1321 GLEAN mRNA 144678 167818 0.544485 + . ID=CGI_10010664; scaffold198 WUBlastX DNA_TcMar-Tc1 426700 427710 586 + . . scaffold198 GLEAN mRNA 419796 449287 0.84054 + . ID=CGI_10027808; scaffold1518 WUBlastX LTR_Ngaro 269519 270628 704 - . . scaffold1518 GLEAN mRNA 258241 287104 0.241996 + . ID=CGI_10017803; scaffold53 WUBlastX DNA_TcMar-Fot1 1004333 1004989 449 + . . scaffold53 GLEAN mRNA 983465 1007230 0.466135 - . ID=CGI_10026695; scaffold683 WUBlastX LINE_RTE-X 85726 85869 78 - . . scaffold683 GLEAN mRNA 80657 98109 0.999674 + . ID=CGI_10010356; scaffold43574 WUBlastX LINE_RTE-X 246328 248010 615 + . . scaffold43574 GLEAN mRNA 246020 254223 1 - . ID=CGI_10010884; scaffold33704 WUBlastX LTR_DIRS 9816 10508 579 + . . scaffold33704 GLEAN mRNA 9816 10809 0.999833 + . ID=CGI_10001119; scaffold33704 WUBlastX LTR_DIRS 10507 10806 236 + . . scaffold33704 GLEAN mRNA 9816 10809 0.999833 + . ID=CGI_10001119; scaffold1498 WUBlastX LINE_L2 90180 91052 450 - . . scaffold1498 GLEAN mRNA 83268 94154 0.999953 + . ID=CGI_10004758; scaffold1498 WUBlastX LINE_L2 91010 91402 169 - . . scaffold1498 GLEAN mRNA 83268 94154 0.999953 + . ID=CGI_10004758; scaffold1498 WUBlastX LINE_L2 91387 91611 139 - . . scaffold1498 GLEAN mRNA 83268 94154 0.999953 + . ID=CGI_10004758; scaffold292 WUBlastX LINE_L1-Tx1 5899 7074 316 + . . scaffold292 GLEAN mRNA 5287 26747 0.497399 + . ID=CGI_10003526; scaffold292 WUBlastX LINE_L1-Tx1 7052 7435 135 + . . scaffold292 GLEAN mRNA 5287 26747 0.497399 + . ID=CGI_10003526; scaffold41858 WUBlastX LINE_RTE-X 108923 110920 761 + . . scaffold41858 GLEAN mRNA 107447 123979 1 + . ID=CGI_10005770; scaffold534 WUBlastX LTR_Gypsy 70837 71496 563 - . . scaffold534 GLEAN mRNA 66095 75550 0.716363 + . ID=CGI_10005164; scaffold980 WUBlastX LINE_RTE-X 78245 78658 233 - . . scaffold980 GLEAN mRNA 43953 80997 0.883179 - . ID=CGI_10019204; scaffold980 WUBlastX LINE_RTE-X 78621 79466 494 - . . scaffold980 GLEAN mRNA 43953 80997 0.883179 - . ID=CGI_10019204; scaffold36936 WUBlastX LTR_Pao 18234 18506 28 - . . scaffold36936 GLEAN mRNA 314 25498 0.932631 - . ID=CGI_10002182; scaffold1350 WUBlastX LINE_CR1 398385 398564 37 - . . scaffold1350 GLEAN mRNA 393414 411683 0.728523 + . ID=CGI_10017317; scaffold37472 WUBlastX LINE_CR1 29596 29694 44 + . . scaffold37472 GLEAN mRNA 1629 29724 0.999786 + . ID=CGI_10002390; scaffold221 WUBlastX LTR_Gypsy 82988 83215 66 + . . scaffold221 GLEAN mRNA 82988 83629 0.999661 + . ID=CGI_10008345; scaffold269 WUBlastX LTR_Ngaro 199268 199366 59 - . . scaffold269 GLEAN mRNA 192453 200699 0.999993 + . ID=CGI_10018996; scaffold90 WUBlastX LTR_Gypsy 135730 135776 20 + . . scaffold90 GLEAN mRNA 135730 142790 0.547035 + . ID=CGI_10015161; scaffold1891 WUBlastX DNA_Harbinger 147032 147193 58 + . . scaffold1891 GLEAN mRNA 133537 158573 0.499706 - . ID=CGI_10008737; scaffold1769 WUBlastX DNA_Kolobok-IS4 138293 138439 36 - . . scaffold1769 GLEAN mRNA 137555 138587 0.999507 - . ID=CGI_10009241; scaffold42990 WUBlastX LINE_RTE-X 188578 188760 20 - . . scaffold42990 GLEAN mRNA 185047 195604 0.999676 + . ID=CGI_10008386; scaffold41210 WUBlastX LTR_Caulimoviru 102622 102795 26 + . . scaffold41210 GLEAN mRNA 102622 102807 0.732703 + . ID=CGI_10004806; scaffold1009 WUBlastX LINE_RTE-X 756697 756897 61 - . . scaffold1009 GLEAN mRNA 749055 758501 1 - . ID=CGI_10028758; scaffold421 WUBlastX LINE_L1-Tx1 175220 175516 61 - . . scaffold421 GLEAN mRNA 170277 178992 0.999676 + . ID=CGI_10012155; scaffold1235 WUBlastX LINE_L2 160720 161097 29 - . . scaffold1235 GLEAN mRNA 159432 170109 0.960098 - . ID=CGI_10011836; scaffold1286 WUBlastX LINE_CR1 4442 4600 37 - . . scaffold1286 GLEAN mRNA 2541 6494 0.999936 - . ID=CGI_10009504; scaffold260 WUBlastX LINE_L2 62732 62884 76 + . . scaffold260 GLEAN mRNA 48314 65715 0.848653 - . ID=CGI_10003729; scaffold3 WUBlastX LTR_Pao 790174 790614 53 + . . scaffold3 GLEAN mRNA 786230 790722 0.588946 + . ID=CGI_10027302; scaffold1024 WUBlastX DNA_PiggyBac 1080272 1080607 39 - . . scaffold1024 GLEAN mRNA 1078261 1083838 0.826098 - . ID=CGI_10028565; scaffold37856 WUBlastX LTR_Gypsy-Cigr 27340 27543 45 + . . scaffold37856 GLEAN mRNA 23108 48588 0.537786 + . ID=CGI_10002519; scaffold3 WUBlastX LTR_Gypsy 521350 521430 67 + . . scaffold3 GLEAN mRNA 521350 521580 0.999999 + . ID=CGI_10027294; scaffold563 WUBlastX LTR_Gypsy 542209 542307 54 - . . scaffold563 GLEAN mRNA 541984 542307 0.999955 - . ID=CGI_10019845; scaffold563 WUBlastX LTR_Gypsy 542480 542634 54 - . . scaffold563 GLEAN mRNA 542480 589820 0.135238 + . ID=CGI_10019846; scaffold41346 WUBlastX RC_Helitron 33266 33763 75 - . . scaffold41346 GLEAN mRNA 32052 37243 0.990251 - . ID=CGI_10004999; scaffold1729 WUBlastX LTR_Ngaro 197242 197319 26 + . . scaffold1729 GLEAN mRNA 196724 202355 0.822484 + . ID=CGI_10008492; scaffold193 WUBlastX LINE_L2 418005 418157 69 - . . scaffold193 GLEAN mRNA 416048 422414 0.990769 - . ID=CGI_10015248; scaffold1772 WUBlastX LINE_L1 402678 402860 55 + . . scaffold1772 GLEAN mRNA 402462 402860 1 + . ID=CGI_10014821; scaffold204 WUBlastX DNA_Kolobok-Hyd 394288 394572 25 + . . scaffold204 GLEAN mRNA 394042 414406 0.339936 + . ID=CGI_10026106; scaffold42466 WUBlastX LINE_RTE-X 114642 115049 23 + . . scaffold42466 GLEAN mRNA 111968 131665 0.500645 + . ID=CGI_10006942; scaffold453 WUBlastX DNA_PiggyBac 357528 357620 37 + . . scaffold453 GLEAN mRNA 346906 361240 0.116749 + . ID=CGI_10015050; scaffold507 WUBlastX LINE_RTE-X 268984 269160 84 - . . scaffold507 GLEAN mRNA 254357 273838 0.999949 - . ID=CGI_10019093; scaffold230 WUBlastX LTR_Gypsy 218575 218991 71 - . . scaffold230 GLEAN mRNA 178498 220276 0.270873 - . ID=CGI_10011252; scaffold1160 WUBlastX DNA_hAT-Tip100 28577 28897 75 + . . scaffold1160 GLEAN mRNA 28577 28954 0.995277 + . ID=CGI_10015340; scaffold34942 WUBlastX DNA_hAT-Tip100 14840 15160 75 - . . scaffold34942 GLEAN mRNA 4327 15160 0.738571 - . ID=CGI_10001379; C31096 WUBlastX LTR_DIRS 5468 5737 29 - . . C31096 GLEAN mRNA 4535 6700 0.999978 - . ID=CGI_10000705; scaffold42840 WUBlastX DNA_Crypton 120166 120570 88 - . . scaffold42840 GLEAN mRNA 99061 121834 0.994857 - . ID=CGI_10007835; scaffold425 WUBlastX LTR_Gypsy 1023842 1023967 42 - . . scaffold425 GLEAN mRNA 997658 1029515 0.993112 - . ID=CGI_10026011; scaffold1750 WUBlastX DNA_Harbinger 681127 681345 59 + . . scaffold1750 GLEAN mRNA 679453 687752 0.873959 - . ID=CGI_10021501; scaffold743 WUBlastX DNA_Harbinger 210546 210758 81 - . . scaffold743 GLEAN mRNA 190625 210773 0.715666 - . ID=CGI_10008616; scaffold321 WUBlastX LINE_L1 171429 171881 77 - . . scaffold321 GLEAN mRNA 170991 171881 0.996199 - . ID=CGI_10020800; scaffold445 WUBlastX LINE_RTE-X 173303 173629 30 - . . scaffold445 GLEAN mRNA 165031 179035 0.981925 - . ID=CGI_10019432; scaffold445 WUBlastX LINE_RTE-X 173303 173629 30 - . . scaffold445 GLEAN mRNA 157494 175078 0.500104 + . ID=CGI_10019431; scaffold107 WUBlastX LINE_RTE-X 495681 495842 33 + . . scaffold107 GLEAN mRNA 482349 496880 0.436429 + . ID=CGI_10025056; scaffold773 WUBlastX DNA_hAT-Tip100 193015 193380 36 + . . scaffold773 GLEAN mRNA 191166 196246 0.998027 + . ID=CGI_10011345; scaffold1518 WUBlastX DNA_hAT-Tip100 159520 159849 90 + . . scaffold1518 GLEAN mRNA 153424 166490 0.996783 + . ID=CGI_10017796; scaffold99 WUBlastX DNA_IS4EU 108050 108427 70 + . . scaffold99 GLEAN mRNA 106780 117604 0.544851 - . ID=CGI_10021191; scaffold588 WUBlastX LTR_Gypsy 414310 415284 57 + . . scaffold588 GLEAN mRNA 413724 423614 0.849231 + . ID=CGI_10016228; scaffold1173 WUBlastX DNA_TcMar-m44 69445 69603 78 + . . scaffold1173 GLEAN mRNA 66584 69723 1 + . ID=CGI_10005745; scaffold126 WUBlastX DNA_MuDR 579445 579690 48 + . . scaffold126 GLEAN mRNA 576864 580670 0.999598 + . ID=CGI_10019200; scaffold1377 WUBlastX LINE_L1 172994 173000 30 + . . scaffold1377 GLEAN mRNA 172994 173758 0.999572 + . ID=CGI_10008622; scaffold1377 WUBlastX LINE_L1 172994 173335 80 + . . scaffold1377 GLEAN mRNA 172994 173758 0.999572 + . ID=CGI_10008622; scaffold1402 WUBlastX LINE_RTE-X 157835 158080 73 + . . scaffold1402 GLEAN mRNA 154950 158880 0.996561 - . ID=CGI_10017580; scaffold443 WUBlastX LINE_RTE-X 408733 409029 48 - . . scaffold443 GLEAN mRNA 402348 431121 0.212109 - . ID=CGI_10022775; scaffold1132 WUBlastX LINE_RTE-X 67917 68372 21 - . . scaffold1132 GLEAN mRNA 47693 94911 0.303068 - . ID=CGI_10023311; scaffold1749 WUBlastX DNA_Maverick 106725 106877 88 - . . scaffold1749 GLEAN mRNA 104860 117950 0.57225 + . ID=CGI_10008256; scaffold707 WUBlastX DNA_Sola 37267 37560 96 + . . scaffold707 GLEAN mRNA 28186 50322 0.998251 + . ID=CGI_10007721; scaffold145 WUBlastX LINE_L1-Tx1 391820 392485 35 + . . scaffold145 GLEAN mRNA 380231 413214 0.61414 + . ID=CGI_10026556; scaffold352 WUBlastX DNA_TcMar-Marin 73732 74475 36 - . . scaffold352 GLEAN mRNA 55040 89183 0.972718 + . ID=CGI_10012244; scaffold535 WUBlastX LTR_Copia 556338 556538 36 + . . scaffold535 GLEAN mRNA 556071 562996 0.477113 + . ID=CGI_10020299; scaffold1665 WUBlastX LINE_CR1-L2 415411 415866 62 + . . scaffold1665 GLEAN mRNA 414201 417723 0.990268 - . ID=CGI_10015218; scaffold1014 WUBlastX LINE_L2 593595 594122 82 - . . scaffold1014 GLEAN mRNA 561207 594372 0.621641 - . ID=CGI_10020275; scaffold38750 WUBlastX LINE_RTE-X 5763 6011 87 - . . scaffold38750 GLEAN mRNA 2403 8066 0.927797 + . ID=CGI_10002953; scaffold39464 WUBlastX DNA_Sola 37825 38031 101 + . . scaffold39464 GLEAN mRNA 33607 57080 0.275021 - . ID=CGI_10003387; scaffold750 WUBlastX DNA_IS4EU 112112 112276 39 + . . scaffold750 GLEAN mRNA 95673 121067 0.651358 - . ID=CGI_10022212; scaffold750 WUBlastX DNA_IS4EU 112284 112466 65 + . . scaffold750 GLEAN mRNA 95673 121067 0.651358 - . ID=CGI_10022212; scaffold42022 WUBlastX DNA_Kolobok-IS4 44622 44783 53 - . . scaffold42022 GLEAN mRNA 12310 51169 0.982585 - . ID=CGI_10006049; scaffold471 WUBlastX DNA_MuDR 1229012 1230214 29 - . . scaffold471 GLEAN mRNA 1226022 1238861 0.423333 - . ID=CGI_10027038; scaffold145 WUBlastX LINE_RTE-X 1138262 1138495 34 - . . scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold419 WUBlastX DNA_PiggyBac 39605 39943 113 + . . scaffold419 GLEAN mRNA 39110 43712 0.992133 + . ID=CGI_10028318; scaffold58 WUBlastX LINE_L1 738720 738788 38 + . . scaffold58 GLEAN mRNA 729182 751705 0.472398 + . ID=CGI_10023162; scaffold348 WUBlastX LINE_L2 130459 130857 117 + . . scaffold348 GLEAN mRNA 129346 131334 0.749493 + . ID=CGI_10022971; scaffold541 WUBlastX LTR_Gypsy 62362 62619 128 + . . scaffold541 GLEAN mRNA 50245 65351 0.650911 - . ID=CGI_10022375; scaffold1600 WUBlastX LTR_DIRS 185827 185988 56 + . . scaffold1600 GLEAN mRNA 179369 186583 0.98626 + . ID=CGI_10013038; scaffold1600 WUBlastX LTR_DIRS 185827 185988 56 + . . scaffold1600 GLEAN mRNA 182749 197532 0.996574 - . ID=CGI_10013039; scaffold198 WUBlastX DNA_MuDR 1329451 1329714 41 - . . scaffold198 GLEAN mRNA 1312239 1337375 0.960179 - . ID=CGI_10027863; scaffold40680 WUBlastX DNA_TcMar-Tc1 10887 10997 30 + . . scaffold40680 GLEAN mRNA 16 36776 0.246623 - . ID=CGI_10004353; scaffold983 WUBlastX LINE_CR1 359846 360196 95 + . . scaffold983 GLEAN mRNA 353704 360265 0.995128 + . ID=CGI_10014035; scaffold39096 WUBlastX LTR_Gypsy 50909 51616 128 + . . scaffold39096 GLEAN mRNA 50582 58209 0.813277 + . ID=CGI_10003149; scaffold43182 WUBlastX LTR_Gypsy 170172 170225 25 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold1088 WUBlastX LINE_R2-Hero 37106 37702 134 + . . scaffold1088 GLEAN mRNA 30301 38437 0.893641 - . ID=CGI_10003651; scaffold1789 WUBlastX DNA_TcMar-Tc1 26218 26283 56 - . . scaffold1789 GLEAN mRNA 24055 30627 0.651132 - . ID=CGI_10003176; scaffold433 WUBlastX DNA_PiggyBac 1262933 1263718 93 - . . scaffold433 GLEAN mRNA 1258038 1264095 0.626587 - . ID=CGI_10027122; scaffold12 WUBlastX LTR_Gypsy 293491 293694 34 - . . scaffold12 GLEAN mRNA 290334 319375 0.793549 - . ID=CGI_10018039; scaffold1896 WUBlastX LTR_Ngaro 486207 486317 48 + . . scaffold1896 GLEAN mRNA 482993 491454 0.999947 + . ID=CGI_10019652; scaffold223 WUBlastX LTR_Gypsy 6667 7182 33 - . . scaffold223 GLEAN mRNA 942 7795 0.487602 - . ID=CGI_10012904; scaffold223 WUBlastX LTR_Gypsy 7286 7570 123 - . . scaffold223 GLEAN mRNA 942 7795 0.487602 - . ID=CGI_10012904; scaffold40208 WUBlastX RC_Helitron 35512 35775 35 + . . scaffold40208 GLEAN mRNA 30839 69631 0.999064 + . ID=CGI_10003954; scaffold672 WUBlastX DNA_IS4EU 9257 9379 36 + . . scaffold672 GLEAN mRNA 1455 17003 0.927273 - . ID=CGI_10021021; scaffold695 WUBlastX LINE_L1-Tx1 97998 98387 153 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold43396 WUBlastX LINE_Penelope 186734 186841 44 + . . scaffold43396 GLEAN mRNA 168401 199028 0.999996 + . ID=CGI_10010150; scaffold709 WUBlastX LINE_RTE-X 314550 315197 69 + . . scaffold709 GLEAN mRNA 310064 322384 0.999026 + . ID=CGI_10020089; scaffold41858 WUBlastX DNA_TcMar-Tc1 90875 91222 119 + . . scaffold41858 GLEAN mRNA 78438 94955 0.999356 - . ID=CGI_10005768; scaffold1599 WUBlastX LTR_Gypsy 240492 240887 102 - . . scaffold1599 GLEAN mRNA 238916 249872 0.993706 - . ID=CGI_10027143; scaffold194 WUBlastX RC_Helitron 273120 273767 155 - . . scaffold194 GLEAN mRNA 271235 277293 0.464633 - . ID=CGI_10011069; scaffold194 WUBlastX RC_Helitron 273120 273767 155 - . . scaffold194 GLEAN mRNA 249396 274108 0.709931 + . ID=CGI_10011068; scaffold492 WUBlastX LINE_RTE-X 614438 614530 99 - . . scaffold492 GLEAN mRNA 614231 614530 0.489668 - . ID=CGI_10024849; scaffold43552 WUBlastX DNA_Sola 208701 208838 63 - . . scaffold43552 GLEAN mRNA 203091 219517 0.574406 + . ID=CGI_10011022; scaffold43552 WUBlastX DNA_Sola 208701 208838 63 - . . scaffold43552 GLEAN mRNA 204428 227902 0.829194 - . ID=CGI_10011023; scaffold168 WUBlastX DNA_TcMar-Tc1 1061885 1062061 26 + . . scaffold168 GLEAN mRNA 1061165 1068516 1 + . ID=CGI_10025626; scaffold168 WUBlastX DNA_TcMar-Tc1 1061885 1062061 26 + . . scaffold168 GLEAN mRNA 1061468 1075146 0.901342 - . ID=CGI_10025627; scaffold286 WUBlastX DNA_TcMar-Tc1 435099 435179 26 - . . scaffold286 GLEAN mRNA 423114 437338 0.999999 - . ID=CGI_10015973; scaffold286 WUBlastX DNA_TcMar-Tc1 435099 435179 26 - . . scaffold286 GLEAN mRNA 433158 447481 0.525246 + . ID=CGI_10015974; scaffold44098 WUBlastX DNA_hAT 166709 167257 161 + . . scaffold44098 GLEAN mRNA 163319 167512 1 + . ID=CGI_10017705; scaffold406 WUBlastX DNA_Kolobok 376002 376181 28 + . . scaffold406 GLEAN mRNA 374338 376248 0.990609 + . ID=CGI_10023846; scaffold1214 WUBlastX LINE_RTE-X 244695 244766 33 + . . scaffold1214 GLEAN mRNA 241265 253884 0.274712 + . ID=CGI_10015480; scaffold43726 WUBlastX LINE_CR1-L2 222679 223482 95 - . . scaffold43726 GLEAN mRNA 221786 248971 0.998252 + . ID=CGI_10012027; scaffold43842 WUBlastX LINE_CR1 219427 219549 30 - . . scaffold43842 GLEAN mRNA 211525 222543 0.557237 - . ID=CGI_10013105; scaffold621 WUBlastX LTR_Ngaro 303877 304749 75 + . . scaffold621 GLEAN mRNA 265576 316930 0.261056 - . ID=CGI_10017677; scaffold1532 WUBlastX LTR_Ngaro 641360 641776 89 + . . scaffold1532 GLEAN mRNA 638492 642462 0.995183 + . ID=CGI_10028264; scaffold588 WUBlastX LINE_Penelope 146002 146439 84 - . . scaffold588 GLEAN mRNA 132834 155339 0.82921 + . ID=CGI_10016211; scaffold705 WUBlastX LINE_Penelope 59855 60289 120 + . . scaffold705 GLEAN mRNA 54891 78972 0.408277 - . ID=CGI_10015497; scaffold42840 WUBlastX LINE_RTE-X 2609 3058 126 + . . scaffold42840 GLEAN mRNA 78 8126 0.998904 + . ID=CGI_10007830; scaffold1179 WUBlastX LINE_RTE-X 84454 84960 103 + . . scaffold1179 GLEAN mRNA 79874 93183 1 + . ID=CGI_10027341; scaffold664 WUBlastX DNA_Sola 213415 215217 845 + . . scaffold664 GLEAN mRNA 213415 231457 0.897817 + . ID=CGI_10021440; scaffold1103 WUBlastX LINE_L2 12970 13848 448 + . . scaffold1103 GLEAN mRNA 2927 17962 0.836195 - . ID=CGI_10004868; scaffold204 WUBlastX LINE_L2 321505 321684 54 + . . scaffold204 GLEAN mRNA 318709 324303 0.610548 - . ID=CGI_10026103; scaffold1782 WUBlastX DNA_Kolobok 18615 18878 41 - . . scaffold1782 GLEAN mRNA 7792 19893 0.99249 - . ID=CGI_10004240; scaffold42840 WUBlastX LINE_RTE-X 2606 3184 103 + . . scaffold42840 GLEAN mRNA 78 8126 0.998904 + . ID=CGI_10007830; scaffold145 WUBlastX LINE_RTE-BovB 1137631 1138191 85 - . . scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold149 WUBlastX LINE_L1-Tx1 191490 191666 34 + . . scaffold149 GLEAN mRNA 179199 193397 0.990232 - . ID=CGI_10025295; scaffold1052 WUBlastX LTR_DIRS 35731 37764 1220 - . . scaffold1052 GLEAN mRNA 1917 38966 0.980203 - . ID=CGI_10005467; scaffold1869 WUBlastX LINE_L1-Tx1 205873 206334 123 - . . scaffold1869 GLEAN mRNA 201078 208517 1 - . ID=CGI_10009025; scaffold1817 WUBlastX LINE_L1-Tx1 17588 17683 27 + . . scaffold1817 GLEAN mRNA 9897 44966 0.453567 - . ID=CGI_10005250; scaffold1062 WUBlastX LTR_Gypsy-Troyk 100465 100791 158 - . . scaffold1062 GLEAN mRNA 100465 126410 0.975343 - . ID=CGI_10005742; scaffold1062 WUBlastX LTR_Gypsy-Troyk 104175 104639 292 - . . scaffold1062 GLEAN mRNA 100465 126410 0.975343 - . ID=CGI_10005742; scaffold412 WUBlastX LTR_Ngaro 73099 73275 73 + . . scaffold412 GLEAN mRNA 49163 134272 0.261275 - . ID=CGI_10018559; scaffold1750 WUBlastX DNA_Harbinger 681387 681512 61 + . . scaffold1750 GLEAN mRNA 679453 687752 0.873959 - . ID=CGI_10021501; scaffold550 WUBlastX LINE_L1 61206 61319 46 - . . scaffold550 GLEAN mRNA 42295 70110 0.723644 + . ID=CGI_10012483; scaffold783 WUBlastX LTR_Pao 271733 273238 892 - . . scaffold783 GLEAN mRNA 271175 288350 0.999949 + . ID=CGI_10011687; scaffold783 WUBlastX LTR_Pao 273374 273628 84 - . . scaffold783 GLEAN mRNA 271175 288350 0.999949 + . ID=CGI_10011687; scaffold783 WUBlastX LTR_Pao 273706 274350 479 - . . scaffold783 GLEAN mRNA 271175 288350 0.999949 + . ID=CGI_10011687; scaffold783 WUBlastX LTR_Pao 274749 274979 35 - . . scaffold783 GLEAN mRNA 271175 288350 0.999949 + . ID=CGI_10011687; scaffold37712 WUBlastX LTR_Gypsy 36324 36860 225 + . . scaffold37712 GLEAN mRNA 15194 37462 0.403354 - . ID=CGI_10002463; scaffold57 WUBlastX LINE_RTE-X 205773 206186 178 - . . scaffold57 GLEAN mRNA 175786 215064 0.533671 + . ID=CGI_10020545; scaffold1360 WUBlastX LINE_RTE-BovB 39710 40093 50 - . . scaffold1360 GLEAN mRNA 19050 50648 0.715639 + . ID=CGI_10022624; scaffold601 WUBlastX LINE_RTE-X 834064 834629 47 + . . scaffold601 GLEAN mRNA 814190 834629 0.512568 + . ID=CGI_10026849; scaffold808 WUBlastX LINE_L1-Tx1 185233 185604 96 - . . scaffold808 GLEAN mRNA 163011 189170 0.494982 - . ID=CGI_10019018; scaffold1084 WUBlastX LTR_DIRS 147728 148471 174 + . . scaffold1084 GLEAN mRNA 143113 160475 0.702333 + . ID=CGI_10010078; scaffold40512 WUBlastX DNA_IS4EU 52153 52719 189 + . . scaffold40512 GLEAN mRNA 32163 58255 0.783329 + . ID=CGI_10004193; scaffold1132 WUBlastX LINE_L1-Tx1 79529 80005 205 + . . scaffold1132 GLEAN mRNA 47693 94911 0.303068 - . ID=CGI_10023311; scaffold178 WUBlastX LINE_Penelope 103716 104120 65 - . . scaffold178 GLEAN mRNA 95706 112577 0.461285 - . ID=CGI_10004828; scaffold1860 WUBlastX LINE_RTE-X 334222 334659 201 - . . scaffold1860 GLEAN mRNA 329243 343922 0.916009 + . ID=CGI_10013950; scaffold1734 WUBlastX LINE_CR1-L2 153832 154470 112 - . . scaffold1734 GLEAN mRNA 152020 160994 0.46186 + . ID=CGI_10010541; scaffold632 WUBlastX LINE_CR1 482773 483162 42 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold1546 WUBlastX DNA_Kolobok 184078 184293 58 - . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold36642 WUBlastX LINE_L1-Tx1 2365 2808 31 - . . scaffold36642 GLEAN mRNA 976 27657 0.999986 + . ID=CGI_10002025; scaffold36642 WUBlastX LINE_L1-Tx1 3237 3746 55 - . . scaffold36642 GLEAN mRNA 976 27657 0.999986 + . ID=CGI_10002025; scaffold525 WUBlastX LINE_L2 172936 173283 247 - . . scaffold525 GLEAN mRNA 146699 175472 0.279546 - . ID=CGI_10008575; scaffold474 WUBlastX LTR_Pao 41849 42388 249 - . . scaffold474 GLEAN mRNA 31807 44448 0.711345 + . ID=CGI_10007591; scaffold1810 WUBlastX DNA_Harbinger 13683 13841 65 - . . scaffold1810 GLEAN mRNA 13680 13841 1 - . ID=CGI_10007554; scaffold43964 WUBlastX LINE_Penelope 329168 329503 71 + . . scaffold43964 GLEAN mRNA 323260 333228 0.634978 + . ID=CGI_10014658; scaffold1070 WUBlastX LINE_CR1 95756 96745 141 - . . scaffold1070 GLEAN mRNA 87834 98509 0.499838 - . ID=CGI_10004521; scaffold712 WUBlastX LINE_CR1 436650 437264 218 + . . scaffold712 GLEAN mRNA 407397 462275 0.613636 - . ID=CGI_10016489; scaffold1256 WUBlastX LTR_Gypsy 78656 79456 245 + . . scaffold1256 GLEAN mRNA 77329 79943 0.81415 + . ID=CGI_10005427; scaffold847 WUBlastX LINE_RTE-X 281696 282052 102 - . . scaffold847 GLEAN mRNA 273681 282893 0.998253 - . ID=CGI_10022270; scaffold37760 WUBlastX LTR_DIRS 21155 21223 35 - . . scaffold37760 GLEAN mRNA 11272 38265 0.979677 + . ID=CGI_10002466; scaffold786 WUBlastX DNA_TcMar-Marin 364848 365168 94 + . . scaffold786 GLEAN mRNA 348664 365361 0.5 - . ID=CGI_10013709; scaffold296 WUBlastX LINE_L2 245057 245473 264 + . . scaffold296 GLEAN mRNA 234533 247179 0.999949 - . ID=CGI_10011701; scaffold257 WUBlastX LTR_DIRS 1607694 1607756 30 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold42328 WUBlastX LINE_RTE-X 78855 79613 141 - . . scaffold42328 GLEAN mRNA 76482 81194 0.999612 + . ID=CGI_10006554; scaffold290 WUBlastX LINE_RTE-BovB 60097 60453 256 - . . scaffold290 GLEAN mRNA 51430 74485 0.815504 + . ID=CGI_10018531; scaffold479 WUBlastX LTR_Ngaro 87441 88322 213 + . . scaffold479 GLEAN mRNA 82405 99723 0.898056 + . ID=CGI_10015682; scaffold365 WUBlastX DNA_Kolobok 293699 293773 36 + . . scaffold365 GLEAN mRNA 290837 296028 1 + . ID=CGI_10022726; scaffold1350 WUBlastX LTR_Pao 451563 455030 2276 + . . scaffold1350 GLEAN mRNA 448816 473345 0.450856 - . ID=CGI_10017319; scaffold41786 WUBlastX DNA_hAT 109348 109917 161 + . . scaffold41786 GLEAN mRNA 109063 112441 0.994534 + . ID=CGI_10005626; scaffold42226 WUBlastX DNA_Kolobok 121725 121985 148 - . . scaffold42226 GLEAN mRNA 107394 126585 0.842903 + . ID=CGI_10006364; scaffold1603 WUBlastX LTR_Pao 331940 332104 28 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold40638 WUBlastX DNA_En-Spm 55570 56475 255 - . . scaffold40638 GLEAN mRNA 41609 59545 0.679878 - . ID=CGI_10004286; scaffold794 WUBlastX DNA_TcMar-Fot1 394816 394971 75 - . . scaffold794 GLEAN mRNA 378971 426999 0.796099 - . ID=CGI_10017158; scaffold90 WUBlastX DNA_Crypton 389604 389783 96 + . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold90 WUBlastX DNA_Crypton 389942 390325 190 + . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold82 WUBlastX LINE_L1 687055 687429 105 - . . scaffold82 GLEAN mRNA 671230 690151 0.999877 - . ID=CGI_10025267; scaffold1749 WUBlastX LINE_RTE-X 174232 174705 205 - . . scaffold1749 GLEAN mRNA 168130 177487 0.428785 + . ID=CGI_10008260; scaffold3 WUBlastX LTR_Ngaro 973297 973938 146 - . . scaffold3 GLEAN mRNA 958982 982969 0.663393 + . ID=CGI_10027317; scaffold172 WUBlastX LTR_Ngaro 279507 279881 212 - . . scaffold172 GLEAN mRNA 274118 285723 0.998306 - . ID=CGI_10013528; scaffold41242 WUBlastX LINE_L1 100322 100459 77 + . . scaffold41242 GLEAN mRNA 97496 109439 0.170639 - . ID=CGI_10004889; scaffold41242 WUBlastX LINE_L1 101063 101347 69 + . . scaffold41242 GLEAN mRNA 97496 109439 0.170639 - . ID=CGI_10004889; scaffold43878 WUBlastX DNA_Kolobok 63246 63518 150 + . . scaffold43878 GLEAN mRNA 63246 64902 0.999414 + . ID=CGI_10013712; scaffold43878 WUBlastX DNA_Kolobok 63635 63904 60 + . . scaffold43878 GLEAN mRNA 63246 64902 0.999414 + . ID=CGI_10013712; scaffold43878 WUBlastX DNA_Kolobok 64264 64476 27 + . . scaffold43878 GLEAN mRNA 63246 64902 0.999414 + . ID=CGI_10013712; C35068 WUBlastX DNA_hAT-Tip100 4704 4988 40 + . . C35068 GLEAN mRNA 2139 13943 0.995001 + . ID=CGI_10001414; scaffold1480 WUBlastX LINE_R2 137670 138191 271 - . . scaffold1480 GLEAN mRNA 131830 138953 0.535981 - . ID=CGI_10008637; scaffold1670 WUBlastX LINE_L1-Tx1 464461 465078 139 - . . scaffold1670 GLEAN mRNA 448842 475285 0.99939 + . ID=CGI_10017627; scaffold230 WUBlastX LTR_DIRS 215049 215945 308 - . . scaffold230 GLEAN mRNA 178498 220276 0.270873 - . ID=CGI_10011252; scaffold986 WUBlastX DNA_Harbinger 138790 139134 131 - . . scaffold986 GLEAN mRNA 135296 141072 0.877811 + . ID=CGI_10009960; scaffold34 WUBlastX DNA_IS4EU 290533 290751 94 - . . scaffold34 GLEAN mRNA 290500 292814 0.678889 - . ID=CGI_10015943; scaffold43522 WUBlastX LINE_L1-Tx1 101177 102064 333 - . . scaffold43522 GLEAN mRNA 83396 104526 0.999468 + . ID=CGI_10010551; scaffold43446 WUBlastX LINE_CR1 162476 163021 189 + . . scaffold43446 GLEAN mRNA 154155 168433 0.907649 - . ID=CGI_10010403; scaffold1281 WUBlastX LTR_DIRS 12597 12875 193 - . . scaffold1281 GLEAN mRNA 6818 22494 0.72874 + . ID=CGI_10001420; scaffold1800 WUBlastX LINE_CR1-L2 106944 107234 142 + . . scaffold1800 GLEAN mRNA 94548 111010 0.999101 - . ID=CGI_10016398; scaffold1800 WUBlastX LINE_CR1-L2 107215 107853 208 + . . scaffold1800 GLEAN mRNA 94548 111010 0.999101 - . ID=CGI_10016398; scaffold3 WUBlastX LTR_Ngaro 1315938 1316159 115 - . . scaffold3 GLEAN mRNA 1314645 1318382 0.999612 - . ID=CGI_10027337; scaffold1449 WUBlastX DNA_TcMar-Tc1 72966 73313 55 - . . scaffold1449 GLEAN mRNA 67747 83098 0.84051 + . ID=CGI_10010691; scaffold1807 WUBlastX LTR_DIRS 44531 45811 106 + . . scaffold1807 GLEAN mRNA 37010 47983 0.990974 - . ID=CGI_10004644; scaffold1807 WUBlastX LTR_DIRS 45808 46053 92 + . . scaffold1807 GLEAN mRNA 37010 47983 0.990974 - . ID=CGI_10004644; scaffold1807 WUBlastX LTR_DIRS 46056 46349 51 + . . scaffold1807 GLEAN mRNA 37010 47983 0.990974 - . ID=CGI_10004644; scaffold1462 WUBlastX DNA_Maverick 348403 349026 409 - . . scaffold1462 GLEAN mRNA 348326 383431 0.995853 + . ID=CGI_10014386; scaffold38966 WUBlastX DNA_TcMar-Tc1 52435 52818 105 + . . scaffold38966 GLEAN mRNA 40711 56502 0.505852 + . ID=CGI_10003113; scaffold1032 WUBlastX DNA_TcMar-Marin 552166 552453 191 - . . scaffold1032 GLEAN mRNA 545471 568883 0.969277 - . ID=CGI_10021693; scaffold891 WUBlastX DNA_En-Spm 191487 191606 57 + . . scaffold891 GLEAN mRNA 189251 197847 0.702385 + . ID=CGI_10009074; scaffold891 WUBlastX DNA_En-Spm 191942 193129 312 + . . scaffold891 GLEAN mRNA 189251 197847 0.702385 + . ID=CGI_10009074; scaffold43280 WUBlastX LTR_Gypsy 170807 170974 60 + . . scaffold43280 GLEAN mRNA 132335 177835 0.651964 - . ID=CGI_10009657; scaffold38026 WUBlastX LTR_Gypsy 27080 27547 90 + . . scaffold38026 GLEAN mRNA 24330 29871 1 - . ID=CGI_10002428; scaffold43076 WUBlastX LTR_Gypsy 187942 188436 218 - . . scaffold43076 GLEAN mRNA 177922 191367 0.98946 - . ID=CGI_10008769; scaffold43076 WUBlastX LTR_Gypsy 187942 188436 218 - . . scaffold43076 GLEAN mRNA 186716 211039 0.795025 + . ID=CGI_10008770; scaffold43076 WUBlastX LTR_Gypsy 188451 188933 284 - . . scaffold43076 GLEAN mRNA 177922 191367 0.98946 - . ID=CGI_10008769; scaffold43076 WUBlastX LTR_Gypsy 188451 188933 284 - . . scaffold43076 GLEAN mRNA 186716 211039 0.795025 + . ID=CGI_10008770; scaffold409 WUBlastX DNA_TcMar-Marin 60209 60439 57 + . . scaffold409 GLEAN mRNA 51142 66968 0.990811 + . ID=CGI_10004317; scaffold317 WUBlastX DNA_hAT-hATw 135238 135354 36 + . . scaffold317 GLEAN mRNA 123249 146317 0.852803 + . ID=CGI_10019345; scaffold1054 WUBlastX DNA_Kolobok 331938 332156 116 + . . scaffold1054 GLEAN mRNA 331138 333504 0.999415 + . ID=CGI_10012969; scaffold1054 WUBlastX DNA_Kolobok 332284 332553 62 + . . scaffold1054 GLEAN mRNA 331138 333504 0.999415 + . ID=CGI_10012969; scaffold1054 WUBlastX DNA_Kolobok 333036 333284 93 + . . scaffold1054 GLEAN mRNA 331138 333504 0.999415 + . ID=CGI_10012969; scaffold804 WUBlastX LTR_Gypsy 166121 166156 28 - . . scaffold804 GLEAN mRNA 160406 170673 0.986312 - . ID=CGI_10014856; scaffold1800 WUBlastX LTR_Gypsy-Cigr 8011 8217 87 + . . scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; scaffold19 WUBlastX LTR_DIRS 140068 140583 329 - . . scaffold19 GLEAN mRNA 112664 148277 0.596648 - . ID=CGI_10010836; scaffold451 WUBlastX LTR_Gypsy 63980 64261 56 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold1792 WUBlastX LTR_Gypsy 331049 332011 170 + . . scaffold1792 GLEAN mRNA 322843 336201 0.992772 - . ID=CGI_10012752; scaffold1449 WUBlastX DNA_TcMar-Tc1 72301 72957 387 - . . scaffold1449 GLEAN mRNA 67747 83098 0.84051 + . ID=CGI_10010691; scaffold456 WUBlastX LTR_Gypsy 141573 141899 174 + . . scaffold456 GLEAN mRNA 102025 155096 0.577611 + . ID=CGI_10006863; scaffold1321 WUBlastX LTR_Gypsy 160285 160395 32 - . . scaffold1321 GLEAN mRNA 144678 167818 0.544485 + . ID=CGI_10010664; scaffold1154 WUBlastX DNA_PiggyBac 173706 174545 333 + . . scaffold1154 GLEAN mRNA 126524 188335 0.933838 - . ID=CGI_10026155; scaffold942 WUBlastX DNA_PiggyBac 124204 124674 196 - . . scaffold942 GLEAN mRNA 113666 137722 0.300224 + . ID=CGI_10019154; scaffold823 WUBlastX LTR_Gypsy 59986 60549 473 + . . scaffold823 GLEAN mRNA 49313 67666 0.999676 - . ID=CGI_10004169; scaffold36450 WUBlastX RC_Helitron 5148 6428 63 + . . scaffold36450 GLEAN mRNA 3992 12302 0.990019 + . ID=CGI_10001979; scaffold226 WUBlastX LTR_Ngaro 468390 469151 384 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold828 WUBlastX LTR_Copia 95925 96194 62 - . . scaffold828 GLEAN mRNA 93404 108093 0.999999 - . ID=CGI_10007366; scaffold1213 WUBlastX DNA_hAT-Tip100 359063 359497 68 + . . scaffold1213 GLEAN mRNA 350181 406483 0.805895 + . ID=CGI_10027449; scaffold1703 WUBlastX DNA_PiggyBac 91610 91711 29 + . . scaffold1703 GLEAN mRNA 88691 94932 1 + . ID=CGI_10023040; scaffold976 WUBlastX LINE_L2 373159 373419 37 + . . scaffold976 GLEAN mRNA 356629 381531 0.51151 + . ID=CGI_10014020; scaffold1093 WUBlastX LINE_CR1-L2 82044 82265 83 + . . scaffold1093 GLEAN mRNA 77464 87990 0.558336 + . ID=CGI_10019787; scaffold631 WUBlastX LINE_L2 133273 133326 23 - . . scaffold631 GLEAN mRNA 131392 145592 0.831917 - . ID=CGI_10014172; scaffold1307 WUBlastX LTR_Gypsy 592125 592307 94 + . . scaffold1307 GLEAN mRNA 586550 596673 0.992394 + . ID=CGI_10023769; scaffold581 WUBlastX DNA_En-Spm 197904 198173 83 - . . scaffold581 GLEAN mRNA 197152 206745 0.808206 - . ID=CGI_10013741; scaffold964 WUBlastX LTR_Gypsy 70820 70854 24 + . . scaffold964 GLEAN mRNA 66518 70854 0.999999 - . ID=CGI_10009729; scaffold964 WUBlastX LTR_Gypsy 70913 71005 24 + . . scaffold964 GLEAN mRNA 70913 72246 0.544809 + . ID=CGI_10009730; scaffold365 WUBlastX LINE_I 446102 446746 26 - . . scaffold365 GLEAN mRNA 445580 454152 1 - . ID=CGI_10022738; scaffold37946 WUBlastX DNA_IS4EU 14536 14637 59 + . . scaffold37946 GLEAN mRNA 2025 20198 0.734311 + . ID=CGI_10002553; scaffold1730 WUBlastX DNA_IS4EU 129544 130173 60 - . . scaffold1730 GLEAN mRNA 128597 135866 0.888729 - . ID=CGI_10012255; scaffold1599 WUBlastX LINE_Penelope 246612 246650 21 - . . scaffold1599 GLEAN mRNA 238916 249872 0.993706 - . ID=CGI_10027143; scaffold664 WUBlastX DNA_TcMar-Marin 394187 394393 49 - . . scaffold664 GLEAN mRNA 373118 396523 0.330346 - . ID=CGI_10021447; scaffold35896 WUBlastX LINE_L1 26002 26052 24 - . . scaffold35896 GLEAN mRNA 578 26444 0.497805 - . ID=CGI_10001642; scaffold77 WUBlastX LINE_L1 550680 550967 21 + . . scaffold77 GLEAN mRNA 550497 553488 1 + . ID=CGI_10027984; scaffold723 WUBlastX LINE_L1 313507 313764 51 + . . scaffold723 GLEAN mRNA 313507 313764 0.481188 + . ID=CGI_10015269; scaffold1833 WUBlastX LINE_L1 57902 58120 42 - . . scaffold1833 GLEAN mRNA 49110 69658 0.917044 + . ID=CGI_10007300; scaffold86 WUBlastX LINE_L1-Tx1 217682 217909 31 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold1366 WUBlastX LINE_RTE-BovB 109453 109809 39 - . . scaffold1366 GLEAN mRNA 109000 119073 0.999351 + . ID=CGI_10012291; scaffold49 WUBlastX LINE_RTE-BovB 294018 294161 50 + . . scaffold49 GLEAN mRNA 270599 295772 0.644326 - . ID=CGI_10013286; scaffold42990 WUBlastX LINE_RTE-X 188641 188769 45 - . . scaffold42990 GLEAN mRNA 185047 195604 0.999676 + . ID=CGI_10008386; scaffold492 WUBlastX LINE_RTE-X 874649 874948 48 + . . scaffold492 GLEAN mRNA 857186 878137 0.999349 + . ID=CGI_10024870; scaffold44006 WUBlastX LINE_CR1-L2 430338 430568 96 + . . scaffold44006 GLEAN mRNA 422154 432525 0.999395 - . ID=CGI_10015593; scaffold1711 WUBlastX LTR_Gypsy-Cigr 342220 342450 85 - . . scaffold1711 GLEAN mRNA 341811 351623 0.999555 + . ID=CGI_10015612; scaffold1546 WUBlastX LINE_L2 196572 197321 22 + . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold733 WUBlastX LTR_Gypsy 1017757 1018191 26 + . . scaffold733 GLEAN mRNA 1017652 1019905 0.995936 + . ID=CGI_10025901; scaffold756 WUBlastX DNA_IS4EU 343080 343475 91 - . . scaffold756 GLEAN mRNA 341736 353437 0.789635 - . ID=CGI_10016464; scaffold804 WUBlastX DNA_IS4EU 162078 162572 32 + . . scaffold804 GLEAN mRNA 160406 170673 0.986312 - . ID=CGI_10014856; scaffold53 WUBlastX LINE_L1 548164 548445 72 - . . scaffold53 GLEAN mRNA 545001 589869 0.567528 + . ID=CGI_10026671; scaffold348 WUBlastX LINE_L1 130235 130462 24 + . . scaffold348 GLEAN mRNA 129346 131334 0.749493 + . ID=CGI_10022971; scaffold1844 WUBlastX LINE_L1 125437 125562 27 + . . scaffold1844 GLEAN mRNA 108283 134853 0.924542 + . ID=CGI_10006619; scaffold793 WUBlastX DNA_NOF 67491 67610 31 + . . scaffold793 GLEAN mRNA 61685 72905 0.384935 + . ID=CGI_10010892; scaffold43026 WUBlastX LINE_RTE-BovB 143672 143926 58 - . . scaffold43026 GLEAN mRNA 135566 144191 0.699088 + . ID=CGI_10008550; scaffold1711 WUBlastX LINE_RTE-X 23183 23524 32 + . . scaffold1711 GLEAN mRNA 19250 25931 0.598612 + . ID=CGI_10015595; scaffold1497 WUBlastX LINE_RTE-BovB 40967 41155 57 - . . scaffold1497 GLEAN mRNA 38658 42952 0.927373 + . ID=CGI_10006963; scaffold156 WUBlastX DNA_hAT-Tip100 238845 239093 77 - . . scaffold156 GLEAN mRNA 233811 241733 0.990897 + . ID=CGI_10026484; scaffold1733 WUBlastX LINE_CR1 164541 164837 35 + . . scaffold1733 GLEAN mRNA 156260 181153 0.701996 + . ID=CGI_10009488; scaffold38422 WUBlastX LINE_CR1 30413 30538 80 - . . scaffold38422 GLEAN mRNA 27073 31824 0.999996 - . ID=CGI_10002764; scaffold759 WUBlastX LTR_Gypsy 101958 102632 68 + . . scaffold759 GLEAN mRNA 101001 103047 0.957564 + . ID=CGI_10010775; scaffold37900 WUBlastX LINE_CR1 20370 20792 80 + . . scaffold37900 GLEAN mRNA 13260 48286 0.694403 - . ID=CGI_10002507; scaffold1366 WUBlastX LTR_Gypsy 31524 31955 53 + . . scaffold1366 GLEAN mRNA 30390 31955 0.743724 + . ID=CGI_10012283; scaffold1253 WUBlastX LTR_Gypsy 44178 44711 63 + . . scaffold1253 GLEAN mRNA 16186 44891 0.331456 + . ID=CGI_10004818; scaffold1088 WUBlastX LINE_R2-Hero 37533 37742 68 + . . scaffold1088 GLEAN mRNA 30301 38437 0.893641 - . ID=CGI_10003651; scaffold3 WUBlastX LINE_RTE-X 143391 143678 31 - . . scaffold3 GLEAN mRNA 140543 146890 0.72249 + . ID=CGI_10027280; scaffold422 WUBlastX LINE_RTE-X 185470 185691 80 - . . scaffold422 GLEAN mRNA 175950 190221 0.980281 + . ID=CGI_10018798; scaffold290 WUBlastX LINE_RTE-X 57842 58201 24 + . . scaffold290 GLEAN mRNA 51430 74485 0.815504 + . ID=CGI_10018531; scaffold586 WUBlastX LINE_RTE-X 177903 178190 68 - . . scaffold586 GLEAN mRNA 158543 182219 0.249413 - . ID=CGI_10018000; scaffold963 WUBlastX LINE_RTE-X 63283 63657 21 - . . scaffold963 GLEAN mRNA 61192 70868 0.999999 - . ID=CGI_10015615; scaffold533 WUBlastX LINE_L1-Tx1 98254 98535 32 - . . scaffold533 GLEAN mRNA 82717 99405 0.998409 - . ID=CGI_10005555; scaffold44064 WUBlastX LINE_CR1 215306 215734 47 + . . scaffold44064 GLEAN mRNA 201756 215782 0.297034 - . ID=CGI_10016763; scaffold117 WUBlastX LINE_CR1 53831 54082 105 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold1896 WUBlastX LTR_Gypsy 453614 453685 30 - . . scaffold1896 GLEAN mRNA 449372 460411 0.989805 - . ID=CGI_10019651; scaffold1084 WUBlastX LTR_ERV1 37262 37336 38 + . . scaffold1084 GLEAN mRNA 31266 40802 0.801676 + . ID=CGI_10010075; scaffold40794 WUBlastX DNA_IS4EU 21488 21754 53 + . . scaffold40794 GLEAN mRNA 13820 26649 0.999201 - . ID=CGI_10004495; scaffold37532 WUBlastX LTR_Gypsy 41497 42003 36 + . . scaffold37532 GLEAN mRNA 24867 43092 0.82218 + . ID=CGI_10002401; scaffold315 WUBlastX DNA_Kolobok 41562 41783 61 - . . scaffold315 GLEAN mRNA 38585 42231 0.984467 + . ID=CGI_10020399; scaffold1036 WUBlastX DNA_IS4EU 67772 68227 52 + . . scaffold1036 GLEAN mRNA 62334 73775 0.755696 - . ID=CGI_10019943; scaffold867 WUBlastX LINE_L1 256027 256314 66 + . . scaffold867 GLEAN mRNA 253182 264678 0.938203 - . ID=CGI_10026215; scaffold579 WUBlastX DNA_TcMar-Tc1 205917 206075 31 + . . scaffold579 GLEAN mRNA 193436 221323 0.863149 + . ID=CGI_10011264; scaffold591 WUBlastX DNA_TcMar-Tc2 1079117 1079320 97 + . . scaffold591 GLEAN mRNA 1079117 1079341 0.732046 + . ID=CGI_10027597; scaffold1031 WUBlastX LINE_Penelope 9103 9324 28 - . . scaffold1031 GLEAN mRNA 3884 11736 0.84103 - . ID=CGI_10019690; scaffold1031 WUBlastX LINE_Penelope 10281 10424 56 - . . scaffold1031 GLEAN mRNA 3884 11736 0.84103 - . ID=CGI_10019690; scaffold164 WUBlastX LTR_Gypsy 53360 53893 67 - . . scaffold164 GLEAN mRNA 40628 54980 0.99473 - . ID=CGI_10021845; scaffold109 WUBlastX LINE_RTE-X 330197 330589 54 - . . scaffold109 GLEAN mRNA 303639 363474 0.446526 - . ID=CGI_10022113; scaffold44098 WUBlastX LINE_RTE-X 119806 119952 61 - . . scaffold44098 GLEAN mRNA 115382 139154 0.999935 - . ID=CGI_10017702; scaffold816 WUBlastX DNA_TcMar-Tc1 229476 229697 66 - . . scaffold816 GLEAN mRNA 223398 238743 0.358147 + . ID=CGI_10015655; scaffold42268 WUBlastX DNA_TcMar-Tc1 127878 128183 42 + . . scaffold42268 GLEAN mRNA 125796 135049 0.955691 + . ID=CGI_10006563; scaffold79 WUBlastX DNA_TcMar-Tc1 261611 261952 67 - . . scaffold79 GLEAN mRNA 257196 271359 0.644901 + . ID=CGI_10024620; scaffold825 WUBlastX LINE_L1-Tx1 197046 197501 38 - . . scaffold825 GLEAN mRNA 194651 220674 0.998225 + . ID=CGI_10012712; scaffold33082 WUBlastX LINE_CR1 7465 8112 40 - . . scaffold33082 GLEAN mRNA 1046 12947 0.584166 + . ID=CGI_10000988; scaffold316 WUBlastX LTR_Gypsy 16781 17017 76 + . . scaffold316 GLEAN mRNA 23 25141 0.301379 - . ID=CGI_10001602; scaffold253 WUBlastX LTR_Gypsy 2602 2844 71 - . . scaffold253 GLEAN mRNA 2368 20050 0.999351 + . ID=CGI_10003487; scaffold1024 WUBlastX DNA_IS4EU 1724061 1724477 101 + . . scaffold1024 GLEAN mRNA 1693215 1725420 0.440752 - . ID=CGI_10028584; scaffold43272 WUBlastX DNA_Kolobok 114770 114928 25 - . . scaffold43272 GLEAN mRNA 114590 115074 1 - . ID=CGI_10009668; scaffold126 WUBlastX DNA_MuDR 579743 579997 79 + . . scaffold126 GLEAN mRNA 576864 580670 0.999598 + . ID=CGI_10019200; scaffold753 WUBlastX LINE_L1 316632 317348 54 - . . scaffold753 GLEAN mRNA 307757 329663 0.499275 + . ID=CGI_10014210; scaffold963 WUBlastX LINE_RTE-X 63448 63657 100 - . . scaffold963 GLEAN mRNA 61192 70868 0.999999 - . ID=CGI_10015615; scaffold1873 WUBlastX LINE_RTE-X 179460 179558 29 - . . scaffold1873 GLEAN mRNA 176185 193037 0.487855 + . ID=CGI_10009300; scaffold385 WUBlastX DNA_TcMar-Tc1 276652 277014 80 + . . scaffold385 GLEAN mRNA 273365 289522 0.998167 - . ID=CGI_10011601; scaffold128 WUBlastX LINE_CR1-L2 91097 92038 56 + . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; scaffold19 WUBlastX LTR_DIRS? 201053 201187 20 + . . scaffold19 GLEAN mRNA 192266 206861 0.651568 + . ID=CGI_10010840; scaffold19 WUBlastX LTR_DIRS? 201192 201338 78 + . . scaffold19 GLEAN mRNA 192266 206861 0.651568 + . ID=CGI_10010840; scaffold1354 WUBlastX LINE_Jockey 170034 170225 24 - . . scaffold1354 GLEAN mRNA 170031 176711 0.9991 - . ID=CGI_10014934; scaffold424 WUBlastX DNA_hAT-Ac 94421 94936 52 + . . scaffold424 GLEAN mRNA 91671 98594 0.990391 - . ID=CGI_10014353; scaffold156 WUBlastX DNA_Kolobok-Hyd 688368 688724 79 - . . scaffold156 GLEAN mRNA 669682 693584 0.721042 - . ID=CGI_10026516; scaffold3 WUBlastX DNA_Kolobok-Hyd 289380 289703 33 - . . scaffold3 GLEAN mRNA 287358 293038 0.456262 - . ID=CGI_10027289; scaffold305 WUBlastX LINE_RTE-X 257523 257807 112 + . . scaffold305 GLEAN mRNA 250174 258948 0.912097 + . ID=CGI_10019124; scaffold1123 WUBlastX LINE_RTE-BovB 13815 14171 141 + . . scaffold1123 GLEAN mRNA 4950 19691 0.554793 + . ID=CGI_10018729; scaffold1186 WUBlastX LINE_RTE-X 70729 70809 46 + . . scaffold1186 GLEAN mRNA 62909 95132 0.584728 + . ID=CGI_10010593; scaffold193 WUBlastX LINE_RTE-X 65278 65727 62 - . . scaffold193 GLEAN mRNA 59988 95620 0.99962 + . ID=CGI_10015222; scaffold595 WUBlastX LTR_Ngaro 90722 90997 54 - . . scaffold595 GLEAN mRNA 66058 94029 0.989948 - . ID=CGI_10005863; scaffold880 WUBlastX LTR_Gypsy 512080 512487 121 + . . scaffold880 GLEAN mRNA 490990 515117 0.998312 - . ID=CGI_10022196; scaffold481 WUBlastX LTR_Gypsy 1225973 1226578 134 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold1670 WUBlastX LINE_R2-Hero 35276 35425 22 - . . scaffold1670 GLEAN mRNA 20416 44429 0.542324 + . ID=CGI_10017595; scaffold40120 WUBlastX LINE_L1-Tx1 69162 69512 68 + . . scaffold40120 GLEAN mRNA 53643 82923 0.999676 + . ID=CGI_10003879; scaffold39134 WUBlastX LINE_RTE-X 42067 42399 52 - . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold189 WUBlastX LINE_L1-Tx1 203566 203964 27 - . . scaffold189 GLEAN mRNA 162558 220166 0.999165 - . ID=CGI_10018675; scaffold569 WUBlastX LINE_L1-Tx1 163496 163693 34 - . . scaffold569 GLEAN mRNA 133999 168874 0.674144 + . ID=CGI_10009498; scaffold1070 WUBlastX LINE_L2 96873 96944 23 - . . scaffold1070 GLEAN mRNA 87834 98509 0.499838 - . ID=CGI_10004521; scaffold1791 WUBlastX LTR_Ngaro 100562 100831 100 + . . scaffold1791 GLEAN mRNA 83527 103062 0.896369 - . ID=CGI_10007868; scaffold42076 WUBlastX DNA_Harbinger 144347 144736 106 + . . scaffold42076 GLEAN mRNA 138926 144974 1 - . ID=CGI_10006087; scaffold1188 WUBlastX DNA_Kolobok 217203 217409 34 + . . scaffold1188 GLEAN mRNA 212895 226684 0.80625 + . ID=CGI_10025463; scaffold1736 WUBlastX LINE_RTE-X 627627 627869 67 - . . scaffold1736 GLEAN mRNA 617815 628143 0.537791 - . ID=CGI_10020987; scaffold88 WUBlastX DNA_hAT-Tip100 5647 5862 56 + . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX DNA_hAT-Tip100 8050 8151 28 + . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold524 WUBlastX LINE_CR1 453580 453951 39 - . . scaffold524 GLEAN mRNA 445295 466161 1 + . ID=CGI_10016612; scaffold38912 WUBlastX LINE_L2 6085 6420 85 - . . scaffold38912 GLEAN mRNA 2347 7051 1 + . ID=CGI_10003031; scaffold41472 WUBlastX DNA_Harbinger 18367 18873 107 + . . scaffold41472 GLEAN mRNA 5767 21457 0.999674 - . ID=CGI_10005140; scaffold313 WUBlastX LINE_R2-Hero 679149 679682 164 + . . scaffold313 GLEAN mRNA 678155 687721 0.369345 - . ID=CGI_10026618; scaffold1745 WUBlastX LTR_Ngaro 118140 118388 41 + . . scaffold1745 GLEAN mRNA 107455 123228 0.998783 - . ID=CGI_10005406; scaffold544 WUBlastX LTR_Copia 728345 728524 59 - . . scaffold544 GLEAN mRNA 727518 748903 0.982522 - . ID=CGI_10022583; scaffold86 WUBlastX LTR_Gypsy 44133 44873 88 - . . scaffold86 GLEAN mRNA 43587 47639 0.943261 + . ID=CGI_10028132; scaffold36790 WUBlastX LTR_Ngaro 25463 25768 157 + . . scaffold36790 GLEAN mRNA 14645 35591 0.936014 - . ID=CGI_10002141; scaffold462 WUBlastX LINE_Penelope 4411 5175 109 + . . scaffold462 GLEAN mRNA 1402 8627 1 + . ID=CGI_10000714; scaffold1616 WUBlastX LTR_DIRS 91700 93172 834 + . . scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; scaffold40282 WUBlastX LTR_Gypsy-Gmr1 75712 76014 248 - . . scaffold40282 GLEAN mRNA 56091 83549 0.539379 + . ID=CGI_10004002; scaffold1714 WUBlastX LINE_L2 312214 312456 116 - . . scaffold1714 GLEAN mRNA 306589 325335 0.999557 + . ID=CGI_10013680; scaffold184 WUBlastX DNA_PiggyBac 251800 251904 24 - . . scaffold184 GLEAN mRNA 248871 256134 0.689082 + . ID=CGI_10014799; scaffold315 WUBlastX LINE_RTE-X 304850 304948 43 + . . scaffold315 GLEAN mRNA 296779 330061 0.935948 + . ID=CGI_10020417; scaffold315 WUBlastX LINE_RTE-X 305069 305290 24 + . . scaffold315 GLEAN mRNA 296779 330061 0.935948 + . ID=CGI_10020417; scaffold422 WUBlastX LINE_RTE-X 185733 186137 51 - . . scaffold422 GLEAN mRNA 175950 190221 0.980281 + . ID=CGI_10018798; scaffold422 WUBlastX LINE_RTE-X 186218 186340 23 - . . scaffold422 GLEAN mRNA 175950 190221 0.980281 + . ID=CGI_10018798; scaffold31 WUBlastX LINE_RTE-X 171751 172242 61 - . . scaffold31 GLEAN mRNA 167305 183497 0.965717 + . ID=CGI_10013560; scaffold77 WUBlastX LINE_L1-Tx1 664176 664526 39 + . . scaffold77 GLEAN mRNA 661837 671903 1 - . ID=CGI_10027988; scaffold77 WUBlastX LINE_L1-Tx1 665488 665658 73 + . . scaffold77 GLEAN mRNA 661837 671903 1 - . ID=CGI_10027988; scaffold257 WUBlastX LTR_DIRS 426908 428587 996 - . . scaffold257 GLEAN mRNA 408517 430332 0.376756 - . ID=CGI_10027910; scaffold257 WUBlastX LTR_DIRS 426908 428587 996 - . . scaffold257 GLEAN mRNA 415447 429822 0.479397 + . ID=CGI_10027911; scaffold630 WUBlastX LTR_Gypsy 341276 342256 51 - . . scaffold630 GLEAN mRNA 340806 353631 0.861539 - . ID=CGI_10018332; scaffold315 WUBlastX DNA_Harbinger 428897 429316 66 - . . scaffold315 GLEAN mRNA 427034 448129 0.999057 + . ID=CGI_10020426; scaffold315 WUBlastX DNA_Harbinger 429650 430009 40 - . . scaffold315 GLEAN mRNA 427034 448129 0.999057 + . ID=CGI_10020426; scaffold1067 WUBlastX LINE_L1-Tx1 108034 108327 97 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold1377 WUBlastX LTR_Gypsy 148773 149675 244 + . . scaffold1377 GLEAN mRNA 119143 150442 0.64366 + . ID=CGI_10008621; scaffold489 WUBlastX DNA_Harbinger 112724 113137 105 - . . scaffold489 GLEAN mRNA 93550 113740 0.603671 - . ID=CGI_10020228; scaffold1445 WUBlastX LINE_L1 217647 218231 45 - . . scaffold1445 GLEAN mRNA 215438 231778 0.644744 - . ID=CGI_10010374; scaffold120 WUBlastX DNA_Crypton 220071 220136 22 - . . scaffold120 GLEAN mRNA 195224 226189 0.999675 - . ID=CGI_10017534; scaffold38510 WUBlastX DNA_Sola 28534 28995 23 + . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold38510 WUBlastX DNA_Sola 29349 29459 22 + . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold1831 WUBlastX LINE_RTE-BovB 26456 26773 82 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold43988 WUBlastX LINE_RTE-X 60987 61370 167 - . . scaffold43988 GLEAN mRNA 49566 61691 0.999886 - . ID=CGI_10014965; scaffold513 WUBlastX LTR_Pao 11025 11609 220 + . . scaffold513 GLEAN mRNA 2113 39536 0.917684 + . ID=CGI_10022134; scaffold1750 WUBlastX LTR_Pao 636768 637082 126 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold59 WUBlastX LTR_Ngaro 73223 73879 160 - . . scaffold59 GLEAN mRNA 68986 78873 0.61656 - . ID=CGI_10011272; scaffold676 WUBlastX LINE_RTE-X 576298 576432 69 - . . scaffold676 GLEAN mRNA 560023 599101 0.378138 + . ID=CGI_10021432; scaffold351 WUBlastX DNA_Sola 311679 312191 175 + . . scaffold351 GLEAN mRNA 306790 315103 0.777625 + . ID=CGI_10022605; scaffold925 WUBlastX LTR_DIRS 438641 438928 171 + . . scaffold925 GLEAN mRNA 430454 444048 0.986598 + . ID=CGI_10017428; scaffold925 WUBlastX LTR_DIRS 438954 439073 44 + . . scaffold925 GLEAN mRNA 430454 444048 0.986598 + . ID=CGI_10017428; scaffold1001 WUBlastX LINE_RTE-X 129275 129733 193 - . . scaffold1001 GLEAN mRNA 107697 137690 0.433806 + . ID=CGI_10007119; scaffold163 WUBlastX LTR_Gypsy 487856 489790 1027 + . . scaffold163 GLEAN mRNA 485695 492043 0.810494 + . ID=CGI_10018630; scaffold37772 WUBlastX DNA_Maverick 22943 23248 175 - . . scaffold37772 GLEAN mRNA 22803 28480 0.678428 - . ID=CGI_10002493; scaffold1459 WUBlastX LINE_L1 10541 10936 90 + . . scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; scaffold40680 WUBlastX LTR_Gypsy 34490 36340 1880 + . . scaffold40680 GLEAN mRNA 16 36776 0.246623 - . ID=CGI_10004353; scaffold976 WUBlastX LINE_L2 371007 371357 80 + . . scaffold976 GLEAN mRNA 356629 381531 0.51151 + . ID=CGI_10014020; scaffold1866 WUBlastX LINE_CR1-L2 224267 224557 172 + . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold1742 WUBlastX DNA_Harbinger 140235 140597 62 - . . scaffold1742 GLEAN mRNA 139017 145553 0.542354 - . ID=CGI_10010934; scaffold1742 WUBlastX DNA_Harbinger 140734 141108 127 - . . scaffold1742 GLEAN mRNA 139017 145553 0.542354 - . ID=CGI_10010934; scaffold621 WUBlastX LTR_Ngaro 304087 304563 223 + . . scaffold621 GLEAN mRNA 265576 316930 0.261056 - . ID=CGI_10017677; scaffold41560 WUBlastX LINE_RTE-X 109161 109541 181 + . . scaffold41560 GLEAN mRNA 106439 114729 1 + . ID=CGI_10005285; scaffold1785 WUBlastX LTR_Ngaro 648081 648188 32 + . . scaffold1785 GLEAN mRNA 629152 649907 0.539712 - . ID=CGI_10024391; scaffold41380 WUBlastX LINE_RTE-BovB 66793 66834 20 - . . scaffold41380 GLEAN mRNA 65148 69310 0.636303 + . ID=CGI_10005041; scaffold41380 WUBlastX LINE_RTE-BovB 66840 67109 65 - . . scaffold41380 GLEAN mRNA 65148 69310 0.636303 + . ID=CGI_10005041; scaffold41380 WUBlastX LINE_RTE-BovB 67361 67609 93 - . . scaffold41380 GLEAN mRNA 65148 69310 0.636303 + . ID=CGI_10005041; scaffold1551 WUBlastX LINE_RTE-BovB 130056 130142 26 - . . scaffold1551 GLEAN mRNA 130008 130199 0.776736 - . ID=CGI_10011474; scaffold43388 WUBlastX LINE_CR1 222970 223680 541 + . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold794 WUBlastX DNA_TcMar-Fot1 394801 394872 36 - . . scaffold794 GLEAN mRNA 378971 426999 0.796099 - . ID=CGI_10017158; scaffold1377 WUBlastX DNA_Crypton 127636 127800 64 + . . scaffold1377 GLEAN mRNA 119143 150442 0.64366 + . ID=CGI_10008621; scaffold1377 WUBlastX DNA_Crypton 127781 128170 138 + . . scaffold1377 GLEAN mRNA 119143 150442 0.64366 + . ID=CGI_10008621; scaffold1532 WUBlastX LINE_RTE-X 330742 331482 199 - . . scaffold1532 GLEAN mRNA 321703 334271 0.99935 + . ID=CGI_10028244; scaffold1532 WUBlastX LINE_RTE-X 330742 331440 199 - . . scaffold1532 GLEAN mRNA 325933 331440 0.918094 - . ID=CGI_10028245; scaffold1354 WUBlastX LINE_DRE 174521 174682 26 - . . scaffold1354 GLEAN mRNA 170031 176711 0.9991 - . ID=CGI_10014934; scaffold1459 WUBlastX LINE_L1 16116 16427 84 + . . scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; scaffold1154 WUBlastX LTR_DIRS 635605 636108 163 - . . scaffold1154 GLEAN mRNA 592712 637655 0.191782 - . ID=CGI_10026178; scaffold1154 WUBlastX LTR_DIRS 635605 636108 163 - . . scaffold1154 GLEAN mRNA 624576 639648 0.593391 + . ID=CGI_10026180; scaffold1283 WUBlastX LINE_RTE-X 38151 38600 146 + . . scaffold1283 GLEAN mRNA 32464 43957 1 + . ID=CGI_10011783; scaffold825 WUBlastX LTR_Ngaro 118445 119245 220 + . . scaffold825 GLEAN mRNA 107602 120026 0.634689 - . ID=CGI_10012705; scaffold772 WUBlastX DNA_TcMar-Tc1 174587 174778 90 - . . scaffold772 GLEAN mRNA 173305 179319 1 + . ID=CGI_10016584; scaffold29534 WUBlastX LINE_RTE-X 1373 2812 158 + . . scaffold29534 GLEAN mRNA 32 6456 1 - . ID=CGI_10000544; scaffold42558 WUBlastX LINE_L1 88952 89029 28 + . . scaffold42558 GLEAN mRNA 84864 89391 0.979088 + . ID=CGI_10007220; scaffold1350 WUBlastX LTR_Gypsy 119829 120107 63 + . . scaffold1350 GLEAN mRNA 116715 124816 0.68864 + . ID=CGI_10017298; scaffold1350 WUBlastX LTR_Gypsy 119829 120107 63 + . . scaffold1350 GLEAN mRNA 92477 120800 0.694726 - . ID=CGI_10017297; scaffold39966 WUBlastX LTR_Gypsy 11591 12058 85 + . . scaffold39966 GLEAN mRNA 5670 20559 0.999675 + . ID=CGI_10003724; scaffold1541 WUBlastX DNA_TcMar-Tc1 34719 35621 252 - . . scaffold1541 GLEAN mRNA 21231 36409 0.999675 + . ID=CGI_10017876; scaffold1448 WUBlastX LTR_Ngaro 28861 29199 131 - . . scaffold1448 GLEAN mRNA 28289 31614 0.624176 - . ID=CGI_10011853; scaffold1448 WUBlastX LTR_Ngaro 29181 29684 161 - . . scaffold1448 GLEAN mRNA 28289 31614 0.624176 - . ID=CGI_10011853; scaffold6 WUBlastX DNA_hAT-Tip100 721132 722031 282 + . . scaffold6 GLEAN mRNA 701995 741494 0.270237 + . ID=CGI_10022334; scaffold6 WUBlastX DNA_hAT-Tip100 722186 722314 57 + . . scaffold6 GLEAN mRNA 701995 741494 0.270237 + . ID=CGI_10022334; scaffold1094 WUBlastX LINE_L1 631673 631807 39 + . . scaffold1094 GLEAN mRNA 609558 640373 0.531771 - . ID=CGI_10021838; scaffold38272 WUBlastX LINE_L1-Tx1 39551 39787 104 + . . scaffold38272 GLEAN mRNA 12040 52169 0.605388 + . ID=CGI_10002702; scaffold425 WUBlastX DNA_Kolobok 143282 143530 96 - . . scaffold425 GLEAN mRNA 143014 144448 0.999415 - . ID=CGI_10025979; C36680 WUBlastX LINE_CR1 9894 9986 24 - . . C36680 GLEAN mRNA 2216 22548 0.727902 - . ID=CGI_10002070; scaffold406 WUBlastX LTR_Gypsy-Cigr 63897 64007 76 - . . scaffold406 GLEAN mRNA 63105 78647 0.760341 - . ID=CGI_10023839; scaffold337 WUBlastX LTR_Gypsy 490136 490378 146 - . . scaffold337 GLEAN mRNA 483649 507534 0.56595 + . ID=CGI_10028067; scaffold354 WUBlastX DNA_TcMar-Tc1 792092 792187 33 - . . scaffold354 GLEAN mRNA 789292 794805 0.742842 - . ID=CGI_10025738; scaffold597 WUBlastX LINE_L1-Tx1 81083 81535 244 + . . scaffold597 GLEAN mRNA 78607 89731 0.999999 - . ID=CGI_10004930; scaffold597 WUBlastX LINE_L1-Tx1 81547 82131 117 + . . scaffold597 GLEAN mRNA 78607 89731 0.999999 - . ID=CGI_10004930; scaffold457 WUBlastX LINE_L1-Tx1 216851 217981 194 + . . scaffold457 GLEAN mRNA 213050 222173 0.400336 - . ID=CGI_10014534; scaffold38130 WUBlastX DNA_Maverick 28724 29824 372 - . . scaffold38130 GLEAN mRNA 25137 30326 0.998369 - . ID=CGI_10002636; scaffold1714 WUBlastX LINE_L2 311883 312014 65 - . . scaffold1714 GLEAN mRNA 306589 325335 0.999557 + . ID=CGI_10013680; scaffold40264 WUBlastX LINE_Proto2 51354 52400 157 - . . scaffold40264 GLEAN mRNA 10435 67637 0.512371 + . ID=CGI_10004012; scaffold1132 WUBlastX LINE_RTE-X 421649 421987 61 + . . scaffold1132 GLEAN mRNA 413110 426704 0.743295 - . ID=CGI_10023318; scaffold1132 WUBlastX LINE_RTE-X 423175 423465 194 + . . scaffold1132 GLEAN mRNA 413110 426704 0.743295 - . ID=CGI_10023318; scaffold1429 WUBlastX DNA_Kolobok-IS4 15455 15862 27 + . . scaffold1429 GLEAN mRNA 13458 17611 0.727726 + . ID=CGI_10001355; scaffold531 WUBlastX DNA_Academ 25523 26266 332 - . . scaffold531 GLEAN mRNA 22748 29196 0.526203 - . ID=CGI_10014486; scaffold880 WUBlastX LTR_Ngaro 544548 545492 365 - . . scaffold880 GLEAN mRNA 532350 563503 0.438976 - . ID=CGI_10022201; scaffold34572 WUBlastX DNA_TcMar-Tc1 16138 17151 406 - . . scaffold34572 GLEAN mRNA 9523 18095 0.999909 - . ID=CGI_10001316; scaffold1603 WUBlastX LTR_Pao 332076 332528 170 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold192 WUBlastX DNA_TcMar-Tc1 673526 674335 482 + . . scaffold192 GLEAN mRNA 655198 676504 0.999922 - . ID=CGI_10023723; scaffold1148 WUBlastX DNA_TcMar-Tc1 160710 161027 76 - . . scaffold1148 GLEAN mRNA 158300 165919 0.858513 + . ID=CGI_10008249; scaffold1148 WUBlastX DNA_TcMar-Tc1 161051 161644 218 - . . scaffold1148 GLEAN mRNA 158300 165919 0.858513 + . ID=CGI_10008249; C32536 WUBlastX LINE_RTE-X 4324 4992 114 - . . C32536 GLEAN mRNA 3574 9269 0.999661 - . ID=CGI_10000910; scaffold1447 WUBlastX DNA_TcMar-Tc1 99729 100286 300 - . . scaffold1447 GLEAN mRNA 98553 105907 0.92535 - . ID=CGI_10013817; scaffold1447 WUBlastX DNA_TcMar-Tc1 100285 100683 42 - . . scaffold1447 GLEAN mRNA 98553 105907 0.92535 - . ID=CGI_10013817; scaffold4 WUBlastX LINE_L1-Tx1 346835 347248 24 - . . scaffold4 GLEAN mRNA 343942 353209 0.759631 + . ID=CGI_10021174; scaffold338 WUBlastX DNA_Academ 258933 258933 434 + . . scaffold338 GLEAN mRNA 258409 258933 0.999999 + . ID=CGI_10011189; scaffold338 WUBlastX DNA_Academ 259329 259820 434 + . . scaffold338 GLEAN mRNA 259329 259880 0.557893 + . ID=CGI_10011190; scaffold88 WUBlastX LINE_L1 26382 26696 63 - . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX LINE_L1 26382 26696 63 - . . scaffold88 GLEAN mRNA 22316 33699 0.444301 - . ID=CGI_10011115; scaffold461 WUBlastX DNA_TcMar-Tc1 266219 267142 387 - . . scaffold461 GLEAN mRNA 255647 275095 0.999942 - . ID=CGI_10020107; scaffold1174 WUBlastX LINE_L1-Tx1 170760 171128 47 + . . scaffold1174 GLEAN mRNA 165948 193006 0.453368 - . ID=CGI_10026029; scaffold1749 WUBlastX DNA_Maverick 109465 109620 66 + . . scaffold1749 GLEAN mRNA 104860 117950 0.57225 + . ID=CGI_10008256; scaffold695 WUBlastX LINE_RTE-BovB 715568 716179 602 + . . scaffold695 GLEAN mRNA 705983 727911 0.988963 - . ID=CGI_10023304; scaffold853 WUBlastX LINE_L2 430974 431594 430 - . . scaffold853 GLEAN mRNA 427674 436320 0.99996 - . ID=CGI_10017516; C26936 WUBlastX LTR_Gypsy 1613 2275 350 - . . C26936 GLEAN mRNA 652 3529 1 - . ID=CGI_10000336; scaffold42274 WUBlastX DNA_hAT 12507 12635 86 - . . scaffold42274 GLEAN mRNA 8593 13901 0.722974 - . ID=CGI_10006509; scaffold37430 WUBlastX LTR_Pao 38082 38456 141 - . . scaffold37430 GLEAN mRNA 25525 41907 0.539363 + . ID=CGI_10002358; scaffold37430 WUBlastX LTR_Pao 38473 40479 463 - . . scaffold37430 GLEAN mRNA 25525 41907 0.539363 + . ID=CGI_10002358; scaffold1849 WUBlastX LTR_Gypsy 133753 134088 234 - . . scaffold1849 GLEAN mRNA 132203 140711 0.7781 + . ID=CGI_10015917; scaffold39754 WUBlastX LTR_Pao 12858 14069 700 + . . scaffold39754 GLEAN mRNA 11997 16678 0.584385 + . ID=CGI_10003598; scaffold1849 WUBlastX LTR_Gypsy 132974 133759 505 - . . scaffold1849 GLEAN mRNA 132203 140711 0.7781 + . ID=CGI_10015917; scaffold36450 WUBlastX RC_Helitron 5403 6947 200 + . . scaffold36450 GLEAN mRNA 3992 12302 0.990019 + . ID=CGI_10001979; scaffold469 WUBlastX LTR_Pao 620632 621081 85 - . . scaffold469 GLEAN mRNA 620008 639653 0.99956 + . ID=CGI_10024690; scaffold90 WUBlastX LTR_Gypsy 137890 138801 802 + . . scaffold90 GLEAN mRNA 135730 142790 0.547035 + . ID=CGI_10015161; scaffold1123 WUBlastX LINE_RTE-BovB 14388 14735 391 + . . scaffold1123 GLEAN mRNA 4950 19691 0.554793 + . ID=CGI_10018729; scaffold1123 WUBlastX LINE_RTE-BovB 14704 15384 494 + . . scaffold1123 GLEAN mRNA 4950 19691 0.554793 + . ID=CGI_10018729; scaffold1402 WUBlastX LINE_CR1 341752 341949 50 + . . scaffold1402 GLEAN mRNA 333924 347546 0.999947 - . ID=CGI_10017589; scaffold1448 WUBlastX LTR_Pao 220930 222450 906 + . . scaffold1448 GLEAN mRNA 205659 222787 0.97529 + . ID=CGI_10011856; scaffold712 WUBlastX LINE_L1-Tx1 152784 153791 120 - . . scaffold712 GLEAN mRNA 144650 156180 1 + . ID=CGI_10016478; scaffold712 WUBlastX LINE_L1-Tx1 153965 155245 504 - . . scaffold712 GLEAN mRNA 144650 156180 1 + . ID=CGI_10016478; scaffold41572 WUBlastX LTR_Copia 65688 65879 26 - . . scaffold41572 GLEAN mRNA 65640 78823 0.810505 - . ID=CGI_10005295; scaffold117 WUBlastX LINE_CR1 51521 52066 35 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold41786 WUBlastX DNA_hAT-Tip100 109063 109458 22 + . . scaffold41786 GLEAN mRNA 109063 112441 0.994534 + . ID=CGI_10005626; scaffold271 WUBlastX LTR_Copia 780894 781784 33 - . . scaffold271 GLEAN mRNA 780567 782249 0.988234 - . ID=CGI_10024495; scaffold338 WUBlastX LINE_CR1 52489 52533 24 - . . scaffold338 GLEAN mRNA 47890 56497 0.70241 + . ID=CGI_10011184; scaffold1815 WUBlastX LINE_L2 237374 237482 37 - . . scaffold1815 GLEAN mRNA 237374 237631 0.998748 - . ID=CGI_10010271; scaffold1138 WUBlastX LINE_L2 185523 185960 29 + . . scaffold1138 GLEAN mRNA 183755 192154 0.999676 - . ID=CGI_10015373; scaffold934 WUBlastX DNA_Harbinger 291153 291353 76 - . . scaffold934 GLEAN mRNA 282815 291724 0.901828 + . ID=CGI_10015447; scaffold1301 WUBlastX DNA_hAT-Charlie 63902 63944 62 - . . scaffold1301 GLEAN mRNA 63902 64216 0.618186 - . ID=CGI_10027703; scaffold1459 WUBlastX LINE_L1-Tx1 214255 214554 43 - . . scaffold1459 GLEAN mRNA 205018 215216 0.471924 - . ID=CGI_10010114; scaffold664 WUBlastX DNA_TcMar-Marin 656090 656176 51 - . . scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold168 WUBlastX DNA_TcMar-Tc1 1062346 1062465 60 + . . scaffold168 GLEAN mRNA 1061165 1068516 1 + . ID=CGI_10025626; scaffold168 WUBlastX DNA_TcMar-Tc1 1062346 1062465 60 + . . scaffold168 GLEAN mRNA 1061468 1075146 0.901342 - . ID=CGI_10025627; scaffold1634 WUBlastX DNA_TcMar-Fot1 91308 91637 47 - . . scaffold1634 GLEAN mRNA 89739 98250 0.998588 + . ID=CGI_10005153; scaffold962 WUBlastX DNA_NOF 366438 366740 45 - . . scaffold962 GLEAN mRNA 363407 372886 0.374498 - . ID=CGI_10027644; scaffold419 WUBlastX LTR_ERV1 1273790 1274203 23 - . . scaffold419 GLEAN mRNA 1266298 1276946 0.922495 + . ID=CGI_10028402; scaffold419 WUBlastX LTR_ERV1 1273790 1274203 23 - . . scaffold419 GLEAN mRNA 1273694 1274755 0.481511 - . ID=CGI_10028403; scaffold1874 WUBlastX LTR_ERV1 141837 142202 24 + . . scaffold1874 GLEAN mRNA 141606 143108 0.999999 + . ID=CGI_10011926; scaffold315 WUBlastX LINE_RTE-BovB 304262 304939 38 + . . scaffold315 GLEAN mRNA 296779 330061 0.935948 + . ID=CGI_10020417; scaffold43522 WUBlastX LINE_RTE-X 92722 92985 31 + . . scaffold43522 GLEAN mRNA 83396 104526 0.999468 + . ID=CGI_10010551; scaffold709 WUBlastX LINE_RTE-X 315519 315611 24 + . . scaffold709 GLEAN mRNA 310064 322384 0.999026 + . ID=CGI_10020089; scaffold354 WUBlastX LINE_RTE-X 72893 73009 35 + . . scaffold354 GLEAN mRNA 46016 92159 0.140194 - . ID=CGI_10025696; scaffold552 WUBlastX LINE_RTE-X 179598 179645 21 - . . scaffold552 GLEAN mRNA 158159 180316 1 + . ID=CGI_10009325; scaffold43446 WUBlastX LINE_RTE-X 188416 188535 24 + . . scaffold43446 GLEAN mRNA 175111 204349 0.996568 - . ID=CGI_10010404; scaffold77 WUBlastX LINE_CR1 1300328 1300849 34 + . . scaffold77 GLEAN mRNA 1293095 1309496 0.999074 - . ID=CGI_10028031; scaffold1081 WUBlastX LTR_Gypsy 164358 164564 50 + . . scaffold1081 GLEAN mRNA 151167 168373 0.603491 + . ID=CGI_10007686; scaffold976 WUBlastX DNA_Harbinger 275067 275342 93 + . . scaffold976 GLEAN mRNA 266197 282153 0.702349 + . ID=CGI_10014014; scaffold1054 WUBlastX DNA_IS4EU 278514 278693 62 + . . scaffold1054 GLEAN mRNA 264440 285046 0.889923 + . ID=CGI_10012963; scaffold1054 WUBlastX DNA_IS4EU 278514 278693 62 + . . scaffold1054 GLEAN mRNA 274617 283441 0.999237 - . ID=CGI_10012964; scaffold1054 WUBlastX DNA_IS4EU 277077 277199 39 + . . scaffold1054 GLEAN mRNA 264440 285046 0.889923 + . ID=CGI_10012963; scaffold1054 WUBlastX DNA_IS4EU 277077 277199 39 + . . scaffold1054 GLEAN mRNA 274617 283441 0.999237 - . ID=CGI_10012964; scaffold1054 WUBlastX DNA_IS4EU 278100 278204 45 + . . scaffold1054 GLEAN mRNA 264440 285046 0.889923 + . ID=CGI_10012963; scaffold1054 WUBlastX DNA_IS4EU 278100 278204 45 + . . scaffold1054 GLEAN mRNA 274617 283441 0.999237 - . ID=CGI_10012964; scaffold1785 WUBlastX DNA_hAT-Ac 927511 927662 67 - . . scaffold1785 GLEAN mRNA 909020 927662 0.54223 - . ID=CGI_10024406; scaffold267 WUBlastX DNA_Kolobok 492708 492878 91 + . . scaffold267 GLEAN mRNA 492434 492911 1 + . ID=CGI_10018313; scaffold43660 WUBlastX LINE_Penelope 127639 127881 20 - . . scaffold43660 GLEAN mRNA 125748 138289 0.998274 + . ID=CGI_10011663; scaffold448 WUBlastX DNA_Kolobok-Hyd 213388 213768 43 + . . scaffold448 GLEAN mRNA 213388 215689 0.999613 + . ID=CGI_10024936; scaffold378 WUBlastX LTR_Gypsy 344813 345169 58 - . . scaffold378 GLEAN mRNA 344618 345241 0.999372 - . ID=CGI_10017652; scaffold271 WUBlastX DNA_Zator 842746 842949 76 - . . scaffold271 GLEAN mRNA 809860 849502 0.997113 - . ID=CGI_10024500; scaffold271 WUBlastX DNA_Zator 842746 842949 76 - . . scaffold271 GLEAN mRNA 833226 854564 0.51616 + . ID=CGI_10024501; scaffold934 WUBlastX LINE_RTE-BovB 268913 269038 23 - . . scaffold934 GLEAN mRNA 262254 282098 1 - . ID=CGI_10015446; scaffold1625 WUBlastX LTR_Gypsy-Cigr 154987 155445 70 - . . scaffold1625 GLEAN mRNA 154393 155445 0.999064 - . ID=CGI_10007531; scaffold381 WUBlastX LINE_R2 442020 442397 72 - . . scaffold381 GLEAN mRNA 430162 460289 0.970742 - . ID=CGI_10017566; scaffold660 WUBlastX DNA_hAT-Tip100 201670 201957 97 + . . scaffold660 GLEAN mRNA 201436 201984 0.999661 + . ID=CGI_10013753; scaffold352 WUBlastX LTR_Gypsy 153518 153796 27 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold204 WUBlastX DNA_Kolobok-Hyd 394336 394725 23 + . . scaffold204 GLEAN mRNA 394042 414406 0.339936 + . ID=CGI_10026106; scaffold1163 WUBlastX LINE_RTE-BovB 200150 200284 28 + . . scaffold1163 GLEAN mRNA 183718 207332 0.990122 - . ID=CGI_10009351; scaffold5 WUBlastX DNA_MuDR 271625 271906 55 - . . scaffold5 GLEAN mRNA 271613 271948 0.999999 - . ID=CGI_10012932; scaffold313 WUBlastX LINE_RTE-X 134319 134479 70 + . . scaffold313 GLEAN mRNA 134319 135998 0.83601 - . ID=CGI_10026584; scaffold1599 WUBlastX LINE_L1-Tx1 546984 547175 69 + . . scaffold1599 GLEAN mRNA 541949 554448 0.648153 + . ID=CGI_10027151; scaffold520 WUBlastX LINE_L1-Tx1 25646 26200 62 + . . scaffold520 GLEAN mRNA 25646 27014 0.984983 + . ID=CGI_10010951; scaffold1214 WUBlastX LTR_Ngaro 251217 251711 26 - . . scaffold1214 GLEAN mRNA 241265 253884 0.274712 + . ID=CGI_10015480; scaffold678 WUBlastX DNA_Harbinger 990605 990961 45 - . . scaffold678 GLEAN mRNA 990593 990979 0.955912 - . ID=CGI_10026391; scaffold513 WUBlastX DNA_IS4EU 156696 156857 71 - . . scaffold513 GLEAN mRNA 149609 156857 0.819622 - . ID=CGI_10022138; scaffold1650 WUBlastX DNA_MuDR 31304 31380 112 - . . scaffold1650 GLEAN mRNA 31012 31380 0.991548 - . ID=CGI_10017769; scaffold1209 WUBlastX DNA_MuDR 121133 121561 45 - . . scaffold1209 GLEAN mRNA 106847 123923 0.38603 - . ID=CGI_10007967; scaffold1209 WUBlastX DNA_MuDR 121891 122082 52 - . . scaffold1209 GLEAN mRNA 106847 123923 0.38603 - . ID=CGI_10007967; scaffold149 WUBlastX LTR_Ngaro 589564 589653 30 - . . scaffold149 GLEAN mRNA 584854 590268 0.922469 + . ID=CGI_10025308; scaffold149 WUBlastX LTR_Ngaro 589647 589880 27 - . . scaffold149 GLEAN mRNA 584854 590268 0.922469 + . ID=CGI_10025308; scaffold343 WUBlastX LINE_RTE-X 646379 646465 23 - . . scaffold343 GLEAN mRNA 643828 662585 1 - . ID=CGI_10021771; scaffold370 WUBlastX LINE_RTE-X 213798 214058 59 + . . scaffold370 GLEAN mRNA 206452 214758 0.593383 + . ID=CGI_10025528; scaffold370 WUBlastX LINE_RTE-X 213798 214058 59 + . . scaffold370 GLEAN mRNA 209445 220615 0.499656 - . ID=CGI_10025529; scaffold575 WUBlastX DNA_Sola 158866 158928 26 - . . scaffold575 GLEAN mRNA 145353 162107 0.486824 - . ID=CGI_10007002; scaffold575 WUBlastX DNA_Sola 159430 159567 32 - . . scaffold575 GLEAN mRNA 145353 162107 0.486824 - . ID=CGI_10007002; scaffold168 WUBlastX DNA_TcMar-Tc1 1062911 1063264 115 + . . scaffold168 GLEAN mRNA 1061165 1068516 1 + . ID=CGI_10025626; scaffold168 WUBlastX DNA_TcMar-Tc1 1062911 1063264 115 + . . scaffold168 GLEAN mRNA 1061468 1075146 0.901342 - . ID=CGI_10025627; scaffold338 WUBlastX LINE_CR1-L2 51028 51108 62 - . . scaffold338 GLEAN mRNA 47890 56497 0.70241 + . ID=CGI_10011184; scaffold1350 WUBlastX LTR_Ngaro 109950 110333 22 - . . scaffold1350 GLEAN mRNA 92477 120800 0.694726 - . ID=CGI_10017297; scaffold41816 WUBlastX LTR_Ngaro 24995 25210 50 - . . scaffold41816 GLEAN mRNA 6032 28025 0.728522 - . ID=CGI_10005647; scaffold41816 WUBlastX LTR_Ngaro 25246 25353 23 - . . scaffold41816 GLEAN mRNA 6032 28025 0.728522 - . ID=CGI_10005647; scaffold12 WUBlastX LTR_Gypsy 339343 339486 24 + . . scaffold12 GLEAN mRNA 326477 354530 0.999321 + . ID=CGI_10018042; scaffold43200 WUBlastX LINE_R2-Hero 123225 123443 93 + . . scaffold43200 GLEAN mRNA 98578 129296 0.928438 + . ID=CGI_10009329; scaffold313 WUBlastX DNA_Harbinger 418123 418389 33 - . . scaffold313 GLEAN mRNA 405100 422748 0.675929 + . ID=CGI_10026603; scaffold313 WUBlastX DNA_Harbinger 418418 418702 56 - . . scaffold313 GLEAN mRNA 405100 422748 0.675929 + . ID=CGI_10026603; scaffold42904 WUBlastX DNA_Kolobok 101959 102522 77 + . . scaffold42904 GLEAN mRNA 87880 118208 0.944676 - . ID=CGI_10008103; scaffold41380 WUBlastX LINE_RTE-BovB 67289 67477 66 - . . scaffold41380 GLEAN mRNA 65148 69310 0.636303 + . ID=CGI_10005041; scaffold1036 WUBlastX DNA_Maverick 205658 205924 66 - . . scaffold1036 GLEAN mRNA 202062 206192 0.444605 - . ID=CGI_10019953; scaffold35438 WUBlastX LINE_L1-Tx1 13738 14004 112 - . . scaffold35438 GLEAN mRNA 3327 22372 0.999028 - . ID=CGI_10001514; scaffold40114 WUBlastX LINE_CR1-L2 21601 21744 57 + . . scaffold40114 GLEAN mRNA 20826 33927 0.999548 + . ID=CGI_10003919; scaffold442 WUBlastX LINE_CR1-L2 79786 80058 109 + . . scaffold442 GLEAN mRNA 79786 80136 0.999397 + . ID=CGI_10005515; scaffold719 WUBlastX LTR_Pao 352431 352763 136 + . . scaffold719 GLEAN mRNA 352016 396683 0.96406 + . ID=CGI_10016008; scaffold138 WUBlastX LINE_L1-Tx1 28032 28358 63 - . . scaffold138 GLEAN mRNA 800 34081 0.879441 + . ID=CGI_10008423; scaffold274 WUBlastX LINE_Penelope 34133 34504 68 - . . scaffold274 GLEAN mRNA 31807 34983 0.990803 + . ID=CGI_10017008; scaffold1682 WUBlastX DNA_TcMar-Marin 448617 448751 57 + . . scaffold1682 GLEAN mRNA 447464 452325 1 - . ID=CGI_10016060; scaffold1682 WUBlastX DNA_TcMar-Marin 448820 449266 33 + . . scaffold1682 GLEAN mRNA 447464 452325 1 - . ID=CGI_10016060; scaffold138 WUBlastX LINE_L1-Tx1 27853 28038 85 - . . scaffold138 GLEAN mRNA 800 34081 0.879441 + . ID=CGI_10008423; scaffold113 WUBlastX LINE_RTE-X 54355 54564 50 + . . scaffold113 GLEAN mRNA 53720 57757 0.859957 + . ID=CGI_10021283; scaffold1873 WUBlastX LINE_L1-Tx1 64736 64792 28 + . . scaffold1873 GLEAN mRNA 42995 66497 0.656652 + . ID=CGI_10009291; scaffold128 WUBlastX DNA_TcMar-Tc1 87402 87644 100 + . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; scaffold31 WUBlastX LINE_L2 15324 15875 115 - . . scaffold31 GLEAN mRNA 7584 16133 0.792688 - . ID=CGI_10013551; scaffold41228 WUBlastX LINE_L2 15957 16511 135 + . . scaffold41228 GLEAN mRNA 12628 43602 0.144447 - . ID=CGI_10004861; scaffold41034 WUBlastX LTR_DIRS 58402 58713 67 + . . scaffold41034 GLEAN mRNA 40186 62880 0.65884 + . ID=CGI_10004651; scaffold596 WUBlastX LTR_Gypsy 209983 210147 100 + . . scaffold596 GLEAN mRNA 209515 220415 0.999343 + . ID=CGI_10009578; scaffold591 WUBlastX LINE_L1 516618 516878 85 + . . scaffold591 GLEAN mRNA 499941 525575 0.696977 - . ID=CGI_10027572; C32276 WUBlastX LTR_ERV1 9452 9691 27 - . . C32276 GLEAN mRNA 2612 10129 0.932261 - . ID=CGI_10000874; scaffold1307 WUBlastX LINE_RTE-X 18069 18356 93 - . . scaffold1307 GLEAN mRNA 6251 45653 0.745308 + . ID=CGI_10023739; scaffold42850 WUBlastX LINE_RTE-X 10738 11187 73 + . . scaffold42850 GLEAN mRNA 3662 13171 0.999996 + . ID=CGI_10007918; scaffold1154 WUBlastX LINE_RTE-X 1033077 1033415 80 + . . scaffold1154 GLEAN mRNA 1031436 1038206 0.969571 + . ID=CGI_10026203; scaffold82 WUBlastX DNA_Sola 272495 273016 124 + . . scaffold82 GLEAN mRNA 272167 273067 0.994575 + . ID=CGI_10025252; scaffold1350 WUBlastX LINE_L2 176587 177132 93 + . . scaffold1350 GLEAN mRNA 175145 193937 0.999592 - . ID=CGI_10017302; scaffold40246 WUBlastX DNA_hAT-Tip100 26073 26390 87 - . . scaffold40246 GLEAN mRNA 25998 27045 0.997233 - . ID=CGI_10003986; scaffold40246 WUBlastX DNA_hAT-Tip100 26506 26838 32 - . . scaffold40246 GLEAN mRNA 25998 27045 0.997233 - . ID=CGI_10003986; scaffold1650 WUBlastX LTR_DIRS 13029 13421 112 - . . scaffold1650 GLEAN mRNA 11438 15410 0.647114 - . ID=CGI_10017768; scaffold1785 WUBlastX LTR_Ngaro 647907 648212 24 + . . scaffold1785 GLEAN mRNA 629152 649907 0.539712 - . ID=CGI_10024391; scaffold678 WUBlastX LTR_Ngaro 89803 89943 41 - . . scaffold678 GLEAN mRNA 85525 97631 0.702112 + . ID=CGI_10026333; scaffold102 WUBlastX LINE_RTE-BovB 1280382 1280534 28 + . . scaffold102 GLEAN mRNA 1269983 1282871 0.999387 - . ID=CGI_10028488; scaffold1283 WUBlastX LINE_RTE-X 51645 51986 52 + . . scaffold1283 GLEAN mRNA 50365 61759 0.999936 - . ID=CGI_10011785; scaffold338 WUBlastX LINE_L2 50585 51085 65 - . . scaffold338 GLEAN mRNA 47890 56497 0.70241 + . ID=CGI_10011184; scaffold338 WUBlastX LINE_L2 51111 51200 21 - . . scaffold338 GLEAN mRNA 47890 56497 0.70241 + . ID=CGI_10011184; scaffold44008 WUBlastX LINE_CR1-L2 179642 179911 100 - . . scaffold44008 GLEAN mRNA 176056 181412 0.761228 - . ID=CGI_10015290; scaffold1854 WUBlastX LTR_Ngaro 21096 21473 140 - . . scaffold1854 GLEAN mRNA 10780 21821 0.727692 - . ID=CGI_10004409; scaffold265 WUBlastX LTR_Ngaro 69374 69778 151 - . . scaffold265 GLEAN mRNA 64182 72514 0.643455 - . ID=CGI_10003429; scaffold413 WUBlastX LTR_Ngaro 143602 143979 142 - . . scaffold413 GLEAN mRNA 138311 158515 0.482983 + . ID=CGI_10022796; scaffold43782 WUBlastX LINE_CR1-L2 114028 114084 21 - . . scaffold43782 GLEAN mRNA 102494 129639 0.999947 + . ID=CGI_10012366; scaffold36278 WUBlastX DNA_PiggyBac 26207 26746 127 - . . scaffold36278 GLEAN mRNA 22300 32002 0.651135 - . ID=CGI_10001848; scaffold41884 WUBlastX LINE_RTE-X 57949 58347 125 + . . scaffold41884 GLEAN mRNA 50798 64593 0.351321 + . ID=CGI_10005780; scaffold203 WUBlastX LINE_RTE-X 628107 628337 30 - . . scaffold203 GLEAN mRNA 599632 671214 0.810319 + . ID=CGI_10021081; scaffold242 WUBlastX LTR_Pao 76737 77306 48 + . . scaffold242 GLEAN mRNA 75832 84666 0.771995 + . ID=CGI_10007083; scaffold58 WUBlastX LTR_Gypsy 567671 568333 69 - . . scaffold58 GLEAN mRNA 565797 572122 0.982335 - . ID=CGI_10023152; scaffold58 WUBlastX LTR_Gypsy 567671 568333 69 - . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; scaffold986 WUBlastX DNA_hAT-Ac 46677 47051 187 + . . scaffold986 GLEAN mRNA 30562 55582 0.15443 + . ID=CGI_10009957; scaffold43182 WUBlastX DNA_Kolobok 148651 148824 76 - . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold1733 WUBlastX LTR_Pao 175077 176183 1120 + . . scaffold1733 GLEAN mRNA 156260 181153 0.701996 + . ID=CGI_10009488; scaffold632 WUBlastX LINE_CR1-L2 511376 511618 59 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold1578 WUBlastX LTR_Pao 66571 66681 21 + . . scaffold1578 GLEAN mRNA 44226 72498 0.998909 - . ID=CGI_10008160; scaffold847 WUBlastX LTR_Gypsy 598536 598691 21 - . . scaffold847 GLEAN mRNA 588396 606136 0.840326 - . ID=CGI_10022283; scaffold40928 WUBlastX DNA_Kolobok 64952 65281 100 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold1219 WUBlastX LINE_RTE-X 581505 581927 122 - . . scaffold1219 GLEAN mRNA 568258 618995 0.744896 - . ID=CGI_10024286; scaffold1700 WUBlastX DNA_Academ 7783 7992 77 + . . scaffold1700 GLEAN mRNA 3279 10052 0.943718 + . ID=CGI_10012800; scaffold305 WUBlastX DNA_hAT-Tip100 178540 178824 67 - . . scaffold305 GLEAN mRNA 172174 179381 0.995798 - . ID=CGI_10019119; scaffold976 WUBlastX LTR_Pao 46363 46794 209 - . . scaffold976 GLEAN mRNA 40652 60127 0.884558 - . ID=CGI_10014002; scaffold1670 WUBlastX LINE_CR1 398753 399064 133 + . . scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; scaffold35994 WUBlastX LTR_Gypsy 23927 24322 192 + . . scaffold35994 GLEAN mRNA 21382 24601 0.722015 + . ID=CGI_10001675; scaffold1753 WUBlastX LINE_L1 266814 267389 85 - . . scaffold1753 GLEAN mRNA 261922 275452 0.949513 - . ID=CGI_10010811; scaffold630 WUBlastX LTR_Gypsy 341558 342256 494 - . . scaffold630 GLEAN mRNA 340806 353631 0.861539 - . ID=CGI_10018332; scaffold630 WUBlastX LTR_Gypsy 342925 343101 166 - . . scaffold630 GLEAN mRNA 340806 353631 0.861539 - . ID=CGI_10018332; scaffold630 WUBlastX LTR_Gypsy 343100 343228 108 - . . scaffold630 GLEAN mRNA 340806 353631 0.861539 - . ID=CGI_10018332; scaffold784 WUBlastX LTR_Gypsy 306915 308897 1349 - . . scaffold784 GLEAN mRNA 298825 308897 0.999951 - . ID=CGI_10024422; scaffold847 WUBlastX LTR_Gypsy 597271 597369 38 - . . scaffold847 GLEAN mRNA 588396 606136 0.840326 - . ID=CGI_10022283; scaffold77 WUBlastX LINE_RTE-RTE 948472 948555 21 + . . scaffold77 GLEAN mRNA 945677 960566 0.933688 - . ID=CGI_10028012; scaffold1354 WUBlastX LINE_L1-Tx1 171709 174201 1162 - . . scaffold1354 GLEAN mRNA 170031 176711 0.9991 - . ID=CGI_10014934; scaffold1546 WUBlastX RC_Helitron 191073 191624 88 + . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold11 WUBlastX LTR_Gypsy-Cigr 61413 61685 186 - . . scaffold11 GLEAN mRNA 61086 64490 0.65426 - . ID=CGI_10015522; scaffold42840 WUBlastX LINE_CR1 191157 191456 119 + . . scaffold42840 GLEAN mRNA 176465 192129 0.833079 - . ID=CGI_10007840; scaffold1750 WUBlastX DNA_Harbinger 681648 681761 54 + . . scaffold1750 GLEAN mRNA 679453 687752 0.873959 - . ID=CGI_10021501; scaffold459 WUBlastX LINE_RTE-X 92274 92876 164 + . . scaffold459 GLEAN mRNA 88021 99888 0.843454 + . ID=CGI_10018169; scaffold1750 WUBlastX LTR_Pao 637338 637748 254 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold1750 WUBlastX LTR_Pao 634464 635846 528 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold1750 WUBlastX LTR_Pao 635858 636439 359 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold1625 WUBlastX LINE_RTE-X 170255 170308 39 - . . scaffold1625 GLEAN mRNA 163230 175754 0.999993 - . ID=CGI_10007533; scaffold40134 WUBlastX DNA_Maverick 44752 46563 1492 - . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold695 WUBlastX LINE_L1-Tx1 88595 88651 20 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold705 WUBlastX DNA_Kolobok-IS4 401559 402071 78 + . . scaffold705 GLEAN mRNA 397843 425733 0.998279 - . ID=CGI_10015520; scaffold541 WUBlastX LINE_I 469602 471608 30 + . . scaffold541 GLEAN mRNA 466590 480582 0.782383 + . ID=CGI_10022394; scaffold1521 WUBlastX DNA_TcMar-Tc1 217413 217655 112 + . . scaffold1521 GLEAN mRNA 212318 231130 0.482046 + . ID=CGI_10017939; scaffold165 WUBlastX LTR_Gypsy 110693 110923 46 + . . scaffold165 GLEAN mRNA 100697 128503 0.998921 + . ID=CGI_10015315; scaffold544 WUBlastX LTR_Gypsy-Cigr 729884 731971 1341 - . . scaffold544 GLEAN mRNA 727518 748903 0.982522 - . ID=CGI_10022583; scaffold43562 WUBlastX LINE_CR1 167148 167780 180 + . . scaffold43562 GLEAN mRNA 166638 176461 0.999676 + . ID=CGI_10011038; scaffold43562 WUBlastX LINE_CR1 167148 167780 180 + . . scaffold43562 GLEAN mRNA 156935 180007 0.944081 - . ID=CGI_10011037; scaffold557 WUBlastX LINE_CR1 389590 390363 190 - . . scaffold557 GLEAN mRNA 389014 397940 0.685724 - . ID=CGI_10017978; scaffold42648 WUBlastX LTR_Pao 170554 171708 785 - . . scaffold42648 GLEAN mRNA 167771 174774 0.98388 - . ID=CGI_10007395; scaffold42648 WUBlastX LTR_Pao 172892 174289 686 - . . scaffold42648 GLEAN mRNA 167771 174774 0.98388 - . ID=CGI_10007395; scaffold1574 WUBlastX LINE_Proto2 458294 458650 37 - . . scaffold1574 GLEAN mRNA 452128 459537 0.999957 + . ID=CGI_10016335; scaffold1799 WUBlastX LTR_Ngaro 58419 58781 88 - . . scaffold1799 GLEAN mRNA 46929 66946 0.999949 - . ID=CGI_10003631; scaffold35994 WUBlastX DNA_PiggyBac 11907 12422 128 - . . scaffold35994 GLEAN mRNA 1476 13595 0.650997 + . ID=CGI_10001674; scaffold1329 WUBlastX DNA_hAT-Ac 92624 93541 188 - . . scaffold1329 GLEAN mRNA 77218 94406 0.816606 - . ID=CGI_10015782; scaffold383 WUBlastX DNA_Sola 754683 755807 254 + . . scaffold383 GLEAN mRNA 742434 758358 1 + . ID=CGI_10023553; scaffold383 WUBlastX DNA_Sola 754251 755858 232 + . . scaffold383 GLEAN mRNA 742434 758358 1 + . ID=CGI_10023553; scaffold53 WUBlastX DNA_Sola 1160547 1160816 136 - . . scaffold53 GLEAN mRNA 1154714 1165146 0.994946 + . ID=CGI_10026702; scaffold1299 WUBlastX LINE_RTE-BovB 141478 141657 58 - . . scaffold1299 GLEAN mRNA 132868 184987 0.923911 + . ID=CGI_10007586; scaffold392 WUBlastX DNA_Kolobok 896393 896731 87 - . . scaffold392 GLEAN mRNA 896113 900283 0.782453 - . ID=CGI_10024239; scaffold392 WUBlastX DNA_Kolobok 896988 897230 111 - . . scaffold392 GLEAN mRNA 896113 900283 0.782453 - . ID=CGI_10024239; scaffold392 WUBlastX DNA_Kolobok 897361 897576 44 - . . scaffold392 GLEAN mRNA 896113 900283 0.782453 - . ID=CGI_10024239; scaffold392 WUBlastX DNA_Kolobok 898023 898208 46 - . . scaffold392 GLEAN mRNA 896113 900283 0.782453 - . ID=CGI_10024239; scaffold43836 WUBlastX LINE_RTE-X 248848 249804 157 + . . scaffold43836 GLEAN mRNA 242579 251086 0.650911 - . ID=CGI_10013062; scaffold1377 WUBlastX DNA_Kolobok-IS4 185293 185904 259 - . . scaffold1377 GLEAN mRNA 179618 201716 0.456444 + . ID=CGI_10008623; scaffold1377 WUBlastX DNA_Kolobok-IS4 185897 186310 48 - . . scaffold1377 GLEAN mRNA 179618 201716 0.456444 + . ID=CGI_10008623; scaffold680 WUBlastX LINE_Penelope 36982 37728 255 + . . scaffold680 GLEAN mRNA 28858 40321 0.544852 - . ID=CGI_10003337; scaffold632 WUBlastX LINE_L2 512581 512712 35 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold544 WUBlastX LTR_DIRS 563682 564386 95 + . . scaffold544 GLEAN mRNA 559869 574687 0.998045 - . ID=CGI_10022574; scaffold38978 WUBlastX DNA_Harbinger 7527 7757 72 - . . scaffold38978 GLEAN mRNA 443 10686 0.499437 + . ID=CGI_10003126; scaffold38978 WUBlastX DNA_Harbinger 7539 7757 72 - . . scaffold38978 GLEAN mRNA 7539 8521 0.655792 - . ID=CGI_10003127; scaffold1785 WUBlastX LINE_RTE-X 22795 23307 164 + . . scaffold1785 GLEAN mRNA 6322 29997 0.294917 - . ID=CGI_10024349; scaffold1154 WUBlastX LTR_Ngaro 368364 368459 37 + . . scaffold1154 GLEAN mRNA 360464 375818 0.544657 - . ID=CGI_10026164; scaffold1154 WUBlastX LTR_Ngaro 368364 368459 37 + . . scaffold1154 GLEAN mRNA 365982 369978 0.558383 + . ID=CGI_10026165; scaffold630 WUBlastX LTR_Gypsy 374131 375750 342 - . . scaffold630 GLEAN mRNA 373403 389900 0.98161 - . ID=CGI_10018333; scaffold1865 WUBlastX DNA_TcMar-Tc1 135238 135513 36 - . . scaffold1865 GLEAN mRNA 122219 140121 0.998221 + . ID=CGI_10013535; scaffold42948 WUBlastX DNA_hAT 35872 37212 387 + . . scaffold42948 GLEAN mRNA 26605 37566 0.913626 + . ID=CGI_10008222; scaffold39858 WUBlastX DNA_Kolobok 10445 10579 54 - . . scaffold39858 GLEAN mRNA 10188 11366 1 - . ID=CGI_10003659; scaffold689 WUBlastX LTR_Gypsy 355173 355958 392 + . . scaffold689 GLEAN mRNA 335137 371615 0.991732 - . ID=CGI_10014831; scaffold326 WUBlastX DNA_TcMar-Tc1 406 1149 329 + . . scaffold326 GLEAN mRNA 37 8806 0.855561 + . ID=CGI_10003294; scaffold1464 WUBlastX LTR_Gypsy 2336 2596 78 + . . scaffold1464 GLEAN mRNA 1479 25035 0.549445 + . ID=CGI_10003234; scaffold1583 WUBlastX LINE_RTE-X 323387 323725 62 - . . scaffold1583 GLEAN mRNA 302473 325169 0.82008 - . ID=CGI_10025823; scaffold43008 WUBlastX DNA_Kolobok 55418 55597 63 - . . scaffold43008 GLEAN mRNA 53966 64440 0.597586 + . ID=CGI_10008461; scaffold43008 WUBlastX DNA_Kolobok 55669 55911 61 - . . scaffold43008 GLEAN mRNA 53966 64440 0.597586 + . ID=CGI_10008461; scaffold43008 WUBlastX DNA_Kolobok 56103 56174 37 - . . scaffold43008 GLEAN mRNA 53966 64440 0.597586 + . ID=CGI_10008461; scaffold43008 WUBlastX DNA_Kolobok 56195 56305 72 - . . scaffold43008 GLEAN mRNA 53966 64440 0.597586 + . ID=CGI_10008461; scaffold43008 WUBlastX DNA_Kolobok 56498 57094 136 - . . scaffold43008 GLEAN mRNA 53966 64440 0.597586 + . ID=CGI_10008461; scaffold1345 WUBlastX LTR_Gypsy 242416 242862 180 - . . scaffold1345 GLEAN mRNA 239892 251479 1 - . ID=CGI_10016283; scaffold1149 WUBlastX LINE_RTE-X 217415 218347 352 - . . scaffold1149 GLEAN mRNA 215463 220751 0.999395 - . ID=CGI_10023460; scaffold301 WUBlastX DNA_Sola 951256 951522 23 - . . scaffold301 GLEAN mRNA 935860 957762 0.976661 - . ID=CGI_10026737; scaffold1222 WUBlastX LINE_L2 75838 76413 146 + . . scaffold1222 GLEAN mRNA 68719 82791 0.648135 - . ID=CGI_10016236; scaffold94 WUBlastX LTR_Gypsy 64428 64976 28 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold40560 WUBlastX DNA_Harbinger 56407 56508 79 + . . scaffold40560 GLEAN mRNA 52941 60910 0.709835 - . ID=CGI_10004230; scaffold1052 WUBlastX LINE_RTE-X 78031 79116 373 - . . scaffold1052 GLEAN mRNA 59893 79725 0.988141 - . ID=CGI_10005470; scaffold40638 WUBlastX LTR_Gypsy 65802 66251 33 - . . scaffold40638 GLEAN mRNA 61308 67362 0.755375 - . ID=CGI_10004287; scaffold43302 WUBlastX DNA_PiggyBac 59908 60261 243 + . . scaffold43302 GLEAN mRNA 44692 96293 0.992844 + . ID=CGI_10009758; scaffold140 WUBlastX LINE_L1-Tx1 364872 365246 96 - . . scaffold140 GLEAN mRNA 344940 369951 0.671174 - . ID=CGI_10020136; scaffold6 WUBlastX DNA_Sola 613721 613783 44 - . . scaffold6 GLEAN mRNA 613145 618796 0.999953 - . ID=CGI_10022330; scaffold34594 WUBlastX LINE_L2 6113 6667 186 - . . scaffold34594 GLEAN mRNA 5594 16260 0.992512 + . ID=CGI_10001317; scaffold34594 WUBlastX LINE_L2 6678 7181 273 - . . scaffold34594 GLEAN mRNA 5594 16260 0.992512 + . ID=CGI_10001317; scaffold43844 WUBlastX DNA_TcMar-Marin 185935 186198 116 + . . scaffold43844 GLEAN mRNA 182095 193587 0.917611 + . ID=CGI_10013151; scaffold43844 WUBlastX DNA_TcMar-Marin 187252 187656 230 + . . scaffold43844 GLEAN mRNA 182095 193587 0.917611 + . ID=CGI_10013151; scaffold721 WUBlastX LINE_L2 83071 83721 289 + . . scaffold721 GLEAN mRNA 68079 89248 0.992034 + . ID=CGI_10021995; scaffold387 WUBlastX LTR_Gypsy 33508 34287 477 - . . scaffold387 GLEAN mRNA 27360 40673 0.998991 + . ID=CGI_10004497; scaffold387 WUBlastX LTR_Gypsy 35171 35359 156 - . . scaffold387 GLEAN mRNA 27360 40673 0.998991 + . ID=CGI_10004497; scaffold326 WUBlastX LTR_Gypsy 66659 67006 187 + . . scaffold326 GLEAN mRNA 66602 67012 0.649408 + . ID=CGI_10003297; scaffold1670 WUBlastX LTR_DIRS 125122 125499 121 + . . scaffold1670 GLEAN mRNA 125122 125499 1 + . ID=CGI_10017601; scaffold1097 WUBlastX LTR_Gypsy 860173 860310 23 + . . scaffold1097 GLEAN mRNA 848149 863853 0.999116 + . ID=CGI_10024555; scaffold1097 WUBlastX LTR_Gypsy 861771 862169 123 + . . scaffold1097 GLEAN mRNA 848149 863853 0.999116 + . ID=CGI_10024555; scaffold1097 WUBlastX LTR_Gypsy 862264 862935 133 + . . scaffold1097 GLEAN mRNA 848149 863853 0.999116 + . ID=CGI_10024555; scaffold695 WUBlastX LINE_RTE-BovB 716797 716871 35 + . . scaffold695 GLEAN mRNA 705983 727911 0.988963 - . ID=CGI_10023304; scaffold296 WUBlastX LINE_RTE-X 238422 240209 495 - . . scaffold296 GLEAN mRNA 234533 247179 0.999949 - . ID=CGI_10011701; scaffold198 WUBlastX LTR_Gypsy 553334 553402 33 + . . scaffold198 GLEAN mRNA 532542 554203 0.338011 + . ID=CGI_10027815; scaffold1221 WUBlastX RC_Helitron 64671 66413 656 + . . scaffold1221 GLEAN mRNA 56411 69596 0.696179 + . ID=CGI_10019728; scaffold1101 WUBlastX LINE_RTE-X 149559 151016 204 - . . scaffold1101 GLEAN mRNA 141921 154245 0.479315 + . ID=CGI_10023014; scaffold34282 WUBlastX LINE_RTE-X 8283 8987 333 - . . scaffold34282 GLEAN mRNA 2734 14490 1 - . ID=CGI_10001256; scaffold34282 WUBlastX LINE_RTE-X 8999 9484 314 - . . scaffold34282 GLEAN mRNA 2734 14490 1 - . ID=CGI_10001256; scaffold29126 WUBlastX LINE_L2 4621 4649 702 - . . scaffold29126 GLEAN mRNA 802 4649 1 - . ID=CGI_10000483; scaffold980 WUBlastX LINE_RTE-X 77698 78246 74 - . . scaffold980 GLEAN mRNA 43953 80997 0.883179 - . ID=CGI_10019204; scaffold1879 WUBlastX LINE_CR1-L2 120064 120471 147 - . . scaffold1879 GLEAN mRNA 117371 122368 1 - . ID=CGI_10007960; scaffold1154 WUBlastX LTR_DIRS 327841 328341 125 + . . scaffold1154 GLEAN mRNA 300263 342126 0.0862783 - . ID=CGI_10026162; scaffold1154 WUBlastX LTR_DIRS 328616 329119 330 + . . scaffold1154 GLEAN mRNA 300263 342126 0.0862783 - . ID=CGI_10026162; scaffold1154 WUBlastX LTR_DIRS 329125 329550 147 + . . scaffold1154 GLEAN mRNA 300263 342126 0.0862783 - . ID=CGI_10026162; scaffold1154 WUBlastX LTR_DIRS 329943 330296 152 + . . scaffold1154 GLEAN mRNA 300263 342126 0.0862783 - . ID=CGI_10026162; scaffold1024 WUBlastX LINE_RTE-X 1620866 1621741 509 - . . scaffold1024 GLEAN mRNA 1620821 1621741 0.999894 - . ID=CGI_10028582; scaffold107 WUBlastX LTR_Pao 551638 551982 58 - . . scaffold107 GLEAN mRNA 542463 558772 0.592352 + . ID=CGI_10025060; scaffold738 WUBlastX DNA_hAT-Tip100 1935 2261 45 + . . scaffold738 GLEAN mRNA 1336 4448 1 + . ID=CGI_10000540; scaffold1698 WUBlastX LINE_CR1-L2 122879 122986 69 + . . scaffold1698 GLEAN mRNA 115530 127809 0.999999 + . ID=CGI_10019370; scaffold94 WUBlastX LTR_ERV1 64273 64476 24 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold481 WUBlastX LINE_L2 1229536 1229733 75 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold126 WUBlastX DNA_Harbinger 72071 72184 79 + . . scaffold126 GLEAN mRNA 72071 89869 0.988186 + . ID=CGI_10019179; scaffold676 WUBlastX RC_Helitron 427392 427742 56 + . . scaffold676 GLEAN mRNA 427167 428131 0.984027 + . ID=CGI_10021426; scaffold754 WUBlastX DNA_IS4EU 141008 141676 47 + . . scaffold754 GLEAN mRNA 139769 141980 1 - . ID=CGI_10014067; scaffold41400 WUBlastX DNA_IS4EU 72628 73002 43 - . . scaffold41400 GLEAN mRNA 67304 82045 0.489818 + . ID=CGI_10005034; scaffold1097 WUBlastX DNA_TcMar-Tc1 590444 590466 62 - . . scaffold1097 GLEAN mRNA 566282 590466 0.579339 - . ID=CGI_10024535; scaffold563 WUBlastX LINE_RTE-X 378060 378296 59 + . . scaffold563 GLEAN mRNA 371737 379906 0.613364 - . ID=CGI_10019837; scaffold334 WUBlastX LTR_Gypsy-Troyk 818405 818653 29 - . . scaffold334 GLEAN mRNA 818405 818653 0.645784 - . ID=CGI_10025963; scaffold42128 WUBlastX LINE_CR1 136918 137238 62 - . . scaffold42128 GLEAN mRNA 133578 138420 0.702204 - . ID=CGI_10006201; scaffold1232 WUBlastX LTR_Ngaro 62393 62680 36 + . . scaffold1232 GLEAN mRNA 53895 66601 0.999898 - . ID=CGI_10014987; scaffold1882 WUBlastX LTR_Ngaro 148372 148914 99 - . . scaffold1882 GLEAN mRNA 139430 150969 0.999129 + . ID=CGI_10010506; scaffold728 WUBlastX LTR_Gypsy 106667 106831 43 - . . scaffold728 GLEAN mRNA 80377 108098 0.99809 - . ID=CGI_10018228; scaffold6 WUBlastX DNA_IS4EU 714849 714950 58 - . . scaffold6 GLEAN mRNA 701995 741494 0.270237 + . ID=CGI_10022334; scaffold1160 WUBlastX DNA_hAT-Blackja 120703 120933 28 + . . scaffold1160 GLEAN mRNA 114601 121331 0.290577 - . ID=CGI_10015349; scaffold614 WUBlastX DNA_Harbinger 343116 343337 89 - . . scaffold614 GLEAN mRNA 339324 355515 0.640385 - . ID=CGI_10016269; scaffold40412 WUBlastX DNA_Harbinger 9466 9624 51 - . . scaffold40412 GLEAN mRNA 4188 16676 0.991013 - . ID=CGI_10004112; scaffold773 WUBlastX DNA_Harbinger 259016 259177 44 - . . scaffold773 GLEAN mRNA 235107 267865 0.138953 - . ID=CGI_10011348; scaffold1815 WUBlastX LINE_L1 237494 237598 61 - . . scaffold1815 GLEAN mRNA 237374 237631 0.998748 - . ID=CGI_10010271; scaffold828 WUBlastX LINE_RTE-X 90081 90281 86 + . . scaffold828 GLEAN mRNA 78778 92221 0.986584 - . ID=CGI_10007365; scaffold194 WUBlastX DNA_Sola 206500 207069 68 - . . scaffold194 GLEAN mRNA 205150 207069 0.728723 - . ID=CGI_10011067; scaffold751 WUBlastX DNA_TcMar-Tc1 155383 155913 43 - . . scaffold751 GLEAN mRNA 154176 165740 0.999947 - . ID=CGI_10017388; scaffold635 WUBlastX LTR_Gypsy 117822 118010 75 - . . scaffold635 GLEAN mRNA 115264 124278 0.98729 - . ID=CGI_10008922; scaffold90 WUBlastX DNA_Harbinger 258121 258219 24 - . . scaffold90 GLEAN mRNA 256704 258219 0.982419 + . ID=CGI_10015169; scaffold1532 WUBlastX DNA_Harbinger 176657 176953 77 - . . scaffold1532 GLEAN mRNA 176651 177200 0.889583 - . ID=CGI_10028236; scaffold1210 WUBlastX DNA_hAT-Ac 293877 294188 93 + . . scaffold1210 GLEAN mRNA 285896 306998 0.325296 + . ID=CGI_10014610; scaffold156 WUBlastX DNA_IS4EU 303352 303654 77 - . . scaffold156 GLEAN mRNA 302829 305068 0.999798 - . ID=CGI_10026492; scaffold1448 WUBlastX DNA_Kolobok-Hyd 268778 268915 41 - . . scaffold1448 GLEAN mRNA 268542 268915 0.943479 - . ID=CGI_10011859; scaffold760 WUBlastX LTR_Gypsy 801426 801824 37 - . . scaffold760 GLEAN mRNA 798582 806606 0.999169 - . ID=CGI_10024013; scaffold42840 WUBlastX LINE_CR1 190796 190918 46 + . . scaffold42840 GLEAN mRNA 176465 192129 0.833079 - . ID=CGI_10007840; scaffold38944 WUBlastX LTR_Gypsy 22826 23467 57 + . . scaffold38944 GLEAN mRNA 22468 23617 0.769564 + . ID=CGI_10003070; scaffold298 WUBlastX LTR_Gypsy 281290 281688 109 - . . scaffold298 GLEAN mRNA 275559 284249 0.999682 - . ID=CGI_10018823; scaffold952 WUBlastX LINE_L1 23196 23495 31 + . . scaffold952 GLEAN mRNA 12544 26052 0.999676 + . ID=CGI_10002898; scaffold237 WUBlastX DNA_Zator 246181 246354 48 + . . scaffold237 GLEAN mRNA 221874 256381 0.776496 + . ID=CGI_10021574; scaffold237 WUBlastX DNA_Zator 246617 246670 29 + . . scaffold237 GLEAN mRNA 221874 256381 0.776496 + . ID=CGI_10021574; scaffold453 WUBlastX LINE_CR1-L2 315130 315255 45 - . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold501 WUBlastX LINE_CR1 792179 792391 29 - . . scaffold501 GLEAN mRNA 786323 819712 0.813868 + . ID=CGI_10027531; scaffold1226 WUBlastX DNA_Crypton 19890 20225 99 + . . scaffold1226 GLEAN mRNA 14403 23712 0.702385 + . ID=CGI_10002681; scaffold1014 WUBlastX DNA_Crypton 516205 516987 31 - . . scaffold1014 GLEAN mRNA 485363 517722 0.614012 - . ID=CGI_10020274; scaffold1497 WUBlastX DNA_Kolobok 24509 24751 68 + . . scaffold1497 GLEAN mRNA 15026 34353 0.836332 + . ID=CGI_10006959; scaffold40440 WUBlastX LTR_DIRS 52260 52532 23 + . . scaffold40440 GLEAN mRNA 51085 65707 0.320377 - . ID=CGI_10004144; scaffold42788 WUBlastX DNA_TcMar-Tc1 67803 68123 53 + . . scaffold42788 GLEAN mRNA 24369 91602 0.998319 - . ID=CGI_10007754; scaffold184 WUBlastX DNA_Merlin 249479 249880 111 + . . scaffold184 GLEAN mRNA 248871 256134 0.689082 + . ID=CGI_10014799; scaffold631 WUBlastX LINE_L2 132779 133087 111 - . . scaffold631 GLEAN mRNA 131392 145592 0.831917 - . ID=CGI_10014172; scaffold304 WUBlastX LTR_Ngaro 333932 334354 74 + . . scaffold304 GLEAN mRNA 327782 339627 0.999019 - . ID=CGI_10016567; scaffold184 WUBlastX DNA_TcMar-Tc1 193968 194258 50 + . . scaffold184 GLEAN mRNA 186538 196154 0.912721 - . ID=CGI_10014797; scaffold3 WUBlastX LINE_CR1-L2 670386 670511 40 + . . scaffold3 GLEAN mRNA 666595 677011 1 + . ID=CGI_10027296; scaffold1237 WUBlastX LTR_Gypsy 222155 222307 20 - . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold161 WUBlastX LTR_Gypsy 110020 110184 26 + . . scaffold161 GLEAN mRNA 106688 117037 0.832376 + . ID=CGI_10008589; scaffold43920 WUBlastX DNA_Kolobok 346880 347080 65 - . . scaffold43920 GLEAN mRNA 342007 379534 0.562069 - . ID=CGI_10014001; scaffold733 WUBlastX LINE_Penelope 513063 513179 28 - . . scaffold733 GLEAN mRNA 408619 548638 0.684241 + . ID=CGI_10025876; scaffold773 WUBlastX LINE_L2 150756 150938 30 + . . scaffold773 GLEAN mRNA 136190 154303 0.840493 - . ID=CGI_10011344; scaffold1127 WUBlastX LINE_L1-Tx1 6005 6250 111 - . . scaffold1127 GLEAN mRNA 44 22807 0.494799 - . ID=CGI_10010645; scaffold1532 WUBlastX DNA_IS4EU 397883 397954 57 + . . scaffold1532 GLEAN mRNA 391874 403369 0.462643 + . ID=CGI_10028249; scaffold203 WUBlastX LINE_RTE-X 77203 77532 64 - . . scaffold203 GLEAN mRNA 73754 84317 0.651071 + . ID=CGI_10021063; scaffold1589 WUBlastX LTR_Gypsy-Cigr 284600 285136 147 - . . scaffold1589 GLEAN mRNA 279757 287553 0.968345 - . ID=CGI_10024110; scaffold150 WUBlastX DNA_Kolobok 1580672 1580986 121 + . . scaffold150 GLEAN mRNA 1577225 1599619 0.685515 + . ID=CGI_10028690; scaffold150 WUBlastX DNA_Kolobok 1581593 1581652 34 + . . scaffold150 GLEAN mRNA 1577225 1599619 0.685515 + . ID=CGI_10028690; scaffold773 WUBlastX DNA_Maverick 240088 240432 123 - . . scaffold773 GLEAN mRNA 235107 267865 0.138953 - . ID=CGI_10011348; scaffold398 WUBlastX LINE_Jockey 2887 3078 21 - . . scaffold398 GLEAN mRNA 896 15325 0.911211 + . ID=CGI_10004360; scaffold40928 WUBlastX LINE_CR1 40616 40807 77 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold39096 WUBlastX LTR_Gypsy-Cigr 22034 22738 108 + . . scaffold39096 GLEAN mRNA 2759 26289 0.999949 + . ID=CGI_10003146; scaffold1745 WUBlastX LTR_Ngaro 118382 118606 137 + . . scaffold1745 GLEAN mRNA 107455 123228 0.998783 - . ID=CGI_10005406; scaffold86 WUBlastX DNA_Academ 399734 399979 115 + . . scaffold86 GLEAN mRNA 398522 403007 0.217037 + . ID=CGI_10028152; scaffold334 WUBlastX DNA_Harbinger 707481 707621 69 + . . scaffold334 GLEAN mRNA 704564 710933 0.999675 - . ID=CGI_10025959; scaffold334 WUBlastX DNA_Harbinger 707481 707621 69 + . . scaffold334 GLEAN mRNA 704630 717663 0.616168 + . ID=CGI_10025960; scaffold334 WUBlastX DNA_Harbinger 707900 708046 36 + . . scaffold334 GLEAN mRNA 704564 710933 0.999675 - . ID=CGI_10025959; scaffold334 WUBlastX DNA_Harbinger 707900 708046 36 + . . scaffold334 GLEAN mRNA 704630 717663 0.616168 + . ID=CGI_10025960; scaffold458 WUBlastX LTR_Ngaro 172728 172922 83 + . . scaffold458 GLEAN mRNA 171659 179488 0.10231 + . ID=CGI_10013591; scaffold458 WUBlastX LTR_Ngaro 172907 174247 851 + . . scaffold458 GLEAN mRNA 171659 179488 0.10231 + . ID=CGI_10013591; scaffold458 WUBlastX LTR_Ngaro 176483 176677 83 + . . scaffold458 GLEAN mRNA 171659 179488 0.10231 + . ID=CGI_10013591; scaffold458 WUBlastX LTR_Ngaro 176662 178002 851 + . . scaffold458 GLEAN mRNA 171659 179488 0.10231 + . ID=CGI_10013591; C34174 WUBlastX LTR_Ngaro 1701 1856 45 + . . C34174 GLEAN mRNA 745 7629 0.544712 - . ID=CGI_10001232; scaffold204 WUBlastX LINE_CR1 850064 850405 113 + . . scaffold204 GLEAN mRNA 840254 857007 0.756652 + . ID=CGI_10026136; scaffold461 WUBlastX LINE_L2 292954 293055 27 - . . scaffold461 GLEAN mRNA 287176 297048 0.67711 - . ID=CGI_10020108; scaffold1403 WUBlastX LTR_DIRS 303166 303441 124 + . . scaffold1403 GLEAN mRNA 301039 311460 0.999994 + . ID=CGI_10020166; scaffold1403 WUBlastX LTR_DIRS 303446 305377 912 + . . scaffold1403 GLEAN mRNA 301039 311460 0.999994 + . ID=CGI_10020166; scaffold610 WUBlastX DNA_Merlin 572244 572684 153 + . . scaffold610 GLEAN mRNA 570530 599736 0.974441 - . ID=CGI_10021131; scaffold42890 WUBlastX LINE_L1 196493 197026 125 + . . scaffold42890 GLEAN mRNA 182304 199068 0.438528 - . ID=CGI_10008045; scaffold211 WUBlastX LINE_RTE-X 702979 703170 35 + . . scaffold211 GLEAN mRNA 691120 715917 0.0754063 + . ID=CGI_10026960; scaffold419 WUBlastX LINE_RTE-X 47709 48578 84 - . . scaffold419 GLEAN mRNA 46988 49900 0.999992 + . ID=CGI_10028319; scaffold39966 WUBlastX LTR_Gypsy 11591 11959 223 + . . scaffold39966 GLEAN mRNA 5670 20559 0.999675 + . ID=CGI_10003724; scaffold1237 WUBlastX LTR_Gypsy 225806 225997 117 - . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; C35952 WUBlastX DNA_Helitron 1577 1981 154 + . . C35952 GLEAN mRNA 195 8083 0.544487 + . ID=CGI_10001669; C35952 WUBlastX DNA_Helitron 1983 2360 44 + . . C35952 GLEAN mRNA 195 8083 0.544487 + . ID=CGI_10001669; scaffold37900 WUBlastX DNA_IS4EU 31933 32226 61 - . . scaffold37900 GLEAN mRNA 13260 48286 0.694403 - . ID=CGI_10002507; scaffold1188 WUBlastX LINE_Penelope 216082 216906 42 + . . scaffold1188 GLEAN mRNA 212895 226684 0.80625 + . ID=CGI_10025463; scaffold1585 WUBlastX LINE_RTE-X 67652 68137 99 + . . scaffold1585 GLEAN mRNA 47886 74932 0.392655 - . ID=CGI_10012588; scaffold97 WUBlastX LINE_L1-Tx1 81480 81947 127 + . . scaffold97 GLEAN mRNA 72894 92330 0.60683 - . ID=CGI_10005686; scaffold54 WUBlastX LTR_Gypsy 81609 83135 946 + . . scaffold54 GLEAN mRNA 79485 84388 0.939929 + . ID=CGI_10023654; scaffold1322 WUBlastX LTR_Pao 407979 408200 80 - . . scaffold1322 GLEAN mRNA 394198 409376 0.999229 - . ID=CGI_10019477; scaffold1322 WUBlastX LTR_Pao 408846 409376 36 - . . scaffold1322 GLEAN mRNA 394198 409376 0.999229 - . ID=CGI_10019477; scaffold406 WUBlastX LTR_Gypsy 135492 136523 586 + . . scaffold406 GLEAN mRNA 128241 151323 0.854188 - . ID=CGI_10023840; scaffold204 WUBlastX LINE_CR1 849759 850046 81 + . . scaffold204 GLEAN mRNA 840254 857007 0.756652 + . ID=CGI_10026136; scaffold37740 WUBlastX DNA_NOF 8426 8923 136 - . . scaffold37740 GLEAN mRNA 280 12182 0.630216 - . ID=CGI_10002468; scaffold1397 WUBlastX LTR_Ngaro 23367 24074 173 + . . scaffold1397 GLEAN mRNA 23367 24092 0.999994 + . ID=CGI_10017114; scaffold1397 WUBlastX LTR_Ngaro 23130 24074 173 + . . scaffold1397 GLEAN mRNA 22041 34038 0.684002 - . ID=CGI_10017113; scaffold507 WUBlastX LTR_Ngaro 42144 42536 190 - . . scaffold507 GLEAN mRNA 41380 65568 0.398486 - . ID=CGI_10019084; scaffold459 WUBlastX LINE_RTE-X 92836 93024 27 + . . scaffold459 GLEAN mRNA 88021 99888 0.843454 + . ID=CGI_10018169; scaffold621 WUBlastX DNA_Academ 314683 315774 536 - . . scaffold621 GLEAN mRNA 265576 316930 0.261056 - . ID=CGI_10017677; scaffold621 WUBlastX DNA_Academ 315804 316538 225 - . . scaffold621 GLEAN mRNA 265576 316930 0.261056 - . ID=CGI_10017677; scaffold1750 WUBlastX LTR_Pao 637254 637748 219 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold804 WUBlastX LTR_Gypsy-Cigr 167923 169386 811 - . . scaffold804 GLEAN mRNA 160406 170673 0.986312 - . ID=CGI_10014856; scaffold723 WUBlastX LTR_Gypsy 209104 209604 85 - . . scaffold723 GLEAN mRNA 194118 214562 0.999791 - . ID=CGI_10015263; scaffold707 WUBlastX DNA_Harbinger 48230 48385 79 - . . scaffold707 GLEAN mRNA 28186 50322 0.998251 + . ID=CGI_10007721; scaffold885 WUBlastX DNA_Kolobok 12934 13128 105 + . . scaffold885 GLEAN mRNA 12934 13146 1 + . ID=CGI_10025186; scaffold885 WUBlastX DNA_Kolobok 12883 13128 105 + . . scaffold885 GLEAN mRNA 11627 19636 0.352613 - . ID=CGI_10025184; scaffold243 WUBlastX DNA_Kolobok 45931 46275 159 - . . scaffold243 GLEAN mRNA 45508 46823 0.518363 - . ID=CGI_10006814; C34256 WUBlastX DNA_Kolobok 10842 11066 36 + . . C34256 GLEAN mRNA 10416 11159 1 + . ID=CGI_10001258; C27694 WUBlastX DNA_Maverick 2574 2687 66 - . . C27694 GLEAN mRNA 2532 3020 1 - . ID=CGI_10000376; scaffold1104 WUBlastX LINE_CR1 517496 518449 599 + . . scaffold1104 GLEAN mRNA 502059 528268 0.99448 - . ID=CGI_10020391; scaffold210 WUBlastX LINE_L2 144683 146959 1260 - . . scaffold210 GLEAN mRNA 130765 152251 0.999676 - . ID=CGI_10015883; scaffold1066 WUBlastX LTR_Gypsy-Cigr 175234 175806 333 + . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold288 WUBlastX LINE_L2 39081 39656 158 - . . scaffold288 GLEAN mRNA 38387 49127 0.651135 + . ID=CGI_10020657; scaffold1322 WUBlastX LTR_Pao 405670 408018 1394 - . . scaffold1322 GLEAN mRNA 394198 409376 0.999229 - . ID=CGI_10019477; scaffold705 WUBlastX DNA_IS4EU 403096 403779 164 + . . scaffold705 GLEAN mRNA 397843 425733 0.998279 - . ID=CGI_10015520; scaffold178 WUBlastX LINE_Penelope 104102 104359 96 - . . scaffold178 GLEAN mRNA 95706 112577 0.461285 - . ID=CGI_10004828; scaffold178 WUBlastX LINE_Penelope 104707 104865 70 - . . scaffold178 GLEAN mRNA 95706 112577 0.461285 - . ID=CGI_10004828; scaffold178 WUBlastX LINE_Penelope 104931 105107 48 - . . scaffold178 GLEAN mRNA 95706 112577 0.461285 - . ID=CGI_10004828; scaffold1866 WUBlastX LINE_CR1-L2 223470 223682 47 + . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold491 WUBlastX LTR_Ngaro 20712 21191 166 - . . scaffold491 GLEAN mRNA 20441 25555 0.994918 - . ID=CGI_10006648; scaffold38904 WUBlastX LTR_Ngaro 22374 23183 148 + . . scaffold38904 GLEAN mRNA 21184 27002 0.495502 - . ID=CGI_10003048; scaffold36790 WUBlastX LTR_Ngaro 25324 25449 77 + . . scaffold36790 GLEAN mRNA 14645 35591 0.936014 - . ID=CGI_10002141; scaffold36790 WUBlastX LTR_Ngaro 25791 25865 56 + . . scaffold36790 GLEAN mRNA 14645 35591 0.936014 - . ID=CGI_10002141; scaffold38480 WUBlastX LTR_Ngaro 52810 52841 80 - . . scaffold38480 GLEAN mRNA 52810 53205 1 - . ID=CGI_10002772; scaffold1574 WUBlastX LINE_L2 456834 457931 188 - . . scaffold1574 GLEAN mRNA 452128 459537 0.999957 + . ID=CGI_10016335; scaffold1427 WUBlastX DNA_Harbinger 104753 105265 192 - . . scaffold1427 GLEAN mRNA 100689 106671 0.382647 + . ID=CGI_10005232; scaffold42674 WUBlastX LINE_RTE-X 175725 176180 287 - . . scaffold42674 GLEAN mRNA 169493 180850 0.544647 + . ID=CGI_10007448; scaffold43702 WUBlastX LINE_RTE-BovB 75655 76242 211 + . . scaffold43702 GLEAN mRNA 66519 92177 0.245591 - . ID=CGI_10011903; scaffold1476 WUBlastX LINE_RTE-X 172540 172662 73 - . . scaffold1476 GLEAN mRNA 169615 179488 0.862141 + . ID=CGI_10009826; scaffold41974 WUBlastX LINE_RTE-BovB 30787 30930 79 + . . scaffold41974 GLEAN mRNA 275 36868 0.405305 - . ID=CGI_10005902; scaffold42648 WUBlastX DNA_Harbinger 114025 114126 233 - . . scaffold42648 GLEAN mRNA 113950 114126 0.999968 - . ID=CGI_10007391; scaffold1427 WUBlastX DNA_Harbinger 104834 105268 215 - . . scaffold1427 GLEAN mRNA 100689 106671 0.382647 + . ID=CGI_10005232; scaffold53 WUBlastX DNA_Kolobok-IS4 1158589 1158738 32 - . . scaffold53 GLEAN mRNA 1154714 1165146 0.994946 + . ID=CGI_10026702; scaffold305 WUBlastX LINE_L1 140641 140901 74 + . . scaffold305 GLEAN mRNA 133464 157357 0.544675 - . ID=CGI_10019118; scaffold550 WUBlastX LINE_L1-Tx1 61209 61301 55 - . . scaffold550 GLEAN mRNA 42295 70110 0.723644 + . ID=CGI_10012483; scaffold962 WUBlastX LINE_L2 747198 747368 113 + . . scaffold962 GLEAN mRNA 737761 749184 0.279681 - . ID=CGI_10027664; scaffold962 WUBlastX LINE_L2 747492 747641 75 + . . scaffold962 GLEAN mRNA 737761 749184 0.279681 - . ID=CGI_10027664; scaffold41452 WUBlastX LINE_L2 62730 63119 191 + . . scaffold41452 GLEAN mRNA 56340 65838 0.524499 + . ID=CGI_10005081; scaffold226 WUBlastX LTR_Gypsy 921740 922240 251 + . . scaffold226 GLEAN mRNA 913200 931789 0.655497 - . ID=CGI_10025388; scaffold508 WUBlastX LTR_Gypsy 15350 15850 251 - . . scaffold508 GLEAN mRNA 12073 17406 0.968836 - . ID=CGI_10011191; scaffold911 WUBlastX LINE_L1 161758 162033 20 - . . scaffold911 GLEAN mRNA 159613 170351 0.499121 + . ID=CGI_10012141; scaffold602 WUBlastX DNA_Harbinger 616333 616449 60 - . . scaffold602 GLEAN mRNA 616228 617272 1 - . ID=CGI_10023197; scaffold602 WUBlastX DNA_Harbinger 616528 616860 169 - . . scaffold602 GLEAN mRNA 616228 617272 1 - . ID=CGI_10023197; scaffold585 WUBlastX LINE_RTE-BovB 127755 128516 333 + . . scaffold585 GLEAN mRNA 123270 129092 1 - . ID=CGI_10005544; scaffold1322 WUBlastX LTR_Ngaro 301070 301465 97 - . . scaffold1322 GLEAN mRNA 265135 302274 0.499623 + . ID=CGI_10019472; scaffold1345 WUBlastX LTR_Gypsy 243484 243612 29 - . . scaffold1345 GLEAN mRNA 239892 251479 1 - . ID=CGI_10016283; scaffold1335 WUBlastX LINE_Penelope 12674 13180 121 - . . scaffold1335 GLEAN mRNA 497 21134 0.65089 + . ID=CGI_10001395; scaffold1335 WUBlastX LINE_Penelope 13183 13659 202 - . . scaffold1335 GLEAN mRNA 497 21134 0.65089 + . ID=CGI_10001395; scaffold337 WUBlastX LTR_Gypsy 489218 490069 150 - . . scaffold337 GLEAN mRNA 483649 507534 0.56595 + . ID=CGI_10028067; C36680 WUBlastX LINE_CR1 9988 10233 67 - . . C36680 GLEAN mRNA 2216 22548 0.727902 - . ID=CGI_10002070; C36680 WUBlastX LINE_CR1 10593 10742 37 - . . C36680 GLEAN mRNA 2216 22548 0.727902 - . ID=CGI_10002070; scaffold276 WUBlastX DNA_Kolobok-IS4 27408 28088 388 - . . scaffold276 GLEAN mRNA 27405 34935 0.425332 - . ID=CGI_10006435; scaffold784 WUBlastX DNA_TcMar-Marin 908603 909262 241 - . . scaffold784 GLEAN mRNA 903046 922274 0.999676 + . ID=CGI_10024450; scaffold43538 WUBlastX LTR_Gypsy-Cigr 11152 11373 179 + . . scaffold43538 GLEAN mRNA 10395 14337 0.902653 + . ID=CGI_10010812; scaffold37900 WUBlastX DNA_IS4EU 29598 30356 490 + . . scaffold37900 GLEAN mRNA 13260 48286 0.694403 - . ID=CGI_10002507; scaffold546 WUBlastX LINE_L1-Tx1 146713 147087 156 + . . scaffold546 GLEAN mRNA 136572 153074 0.999871 - . ID=CGI_10020995; scaffold41174 WUBlastX LINE_RTE-X 69401 69622 135 + . . scaffold41174 GLEAN mRNA 37943 88980 0.479824 - . ID=CGI_10004794; scaffold942 WUBlastX DNA_TcMar-Tc1 397029 397151 76 + . . scaffold942 GLEAN mRNA 390660 406366 0.734087 - . ID=CGI_10019170; scaffold1774 WUBlastX DNA_Kolobok 48204 49013 75 + . . scaffold1774 GLEAN mRNA 36391 50061 0.563353 + . ID=CGI_10006376; scaffold38026 WUBlastX LTR_Gypsy-Cigr 24777 25109 46 + . . scaffold38026 GLEAN mRNA 24330 29871 1 - . ID=CGI_10002428; scaffold1244 WUBlastX LTR_Gypsy 122136 123572 500 - . . scaffold1244 GLEAN mRNA 121009 134472 0.646055 + . ID=CGI_10020823; scaffold42486 WUBlastX DNA_TcMar-Tc1 148449 149078 228 + . . scaffold42486 GLEAN mRNA 141403 154918 0.998251 - . ID=CGI_10006982; scaffold42486 WUBlastX DNA_TcMar-Tc1 149068 149301 165 + . . scaffold42486 GLEAN mRNA 141403 154918 0.998251 - . ID=CGI_10006982; scaffold77 WUBlastX LINE_RTE-BovB 949885 950397 357 + . . scaffold77 GLEAN mRNA 945677 960566 0.933688 - . ID=CGI_10028012; C26936 WUBlastX LTR_Gypsy 2271 3059 408 - . . C26936 GLEAN mRNA 652 3529 1 - . ID=CGI_10000336; scaffold1343 WUBlastX DNA_Maverick 99903 100589 351 + . . scaffold1343 GLEAN mRNA 94192 115140 0.999675 + . ID=CGI_10005048; scaffold321 WUBlastX LTR_Gypsy 478080 478763 172 + . . scaffold321 GLEAN mRNA 474717 485753 0.439448 - . ID=CGI_10020812; scaffold1255 WUBlastX DNA_Kolobok 3822 3989 91 - . . scaffold1255 GLEAN mRNA 3472 8230 0.999979 - . ID=CGI_10018055; scaffold1255 WUBlastX DNA_Kolobok 4175 4333 88 - . . scaffold1255 GLEAN mRNA 3472 8230 0.999979 - . ID=CGI_10018055; scaffold1255 WUBlastX DNA_Kolobok 4508 4747 122 - . . scaffold1255 GLEAN mRNA 3472 8230 0.999979 - . ID=CGI_10018055; scaffold1255 WUBlastX DNA_Kolobok 4834 5031 107 - . . scaffold1255 GLEAN mRNA 3472 8230 0.999979 - . ID=CGI_10018055; scaffold1255 WUBlastX DNA_Kolobok 5250 5780 239 - . . scaffold1255 GLEAN mRNA 3472 8230 0.999979 - . ID=CGI_10018055; scaffold1119 WUBlastX LINE_CR1 141574 142674 686 - . . scaffold1119 GLEAN mRNA 133915 143385 0.654676 + . ID=CGI_10009604; scaffold1119 WUBlastX LINE_CR1 141574 142674 686 - . . scaffold1119 GLEAN mRNA 141381 182559 0.993006 - . ID=CGI_10009605; scaffold43280 WUBlastX LTR_Gypsy 170837 171073 21 + . . scaffold43280 GLEAN mRNA 132335 177835 0.651964 - . ID=CGI_10009657; scaffold102 WUBlastX LTR_Gypsy 674182 674454 646 + . . scaffold102 GLEAN mRNA 674182 674616 0.999999 + . ID=CGI_10028446; scaffold43782 WUBlastX LINE_RTE-X 113130 113546 159 - . . scaffold43782 GLEAN mRNA 102494 129639 0.999947 + . ID=CGI_10012366; scaffold1009 WUBlastX DNA_hAT 491703 491867 102 + . . scaffold1009 GLEAN mRNA 486872 502575 0.999001 - . ID=CGI_10028738; scaffold1009 WUBlastX DNA_hAT 492737 492901 66 + . . scaffold1009 GLEAN mRNA 486872 502575 0.999001 - . ID=CGI_10028738; scaffold1009 WUBlastX DNA_hAT 493213 493449 84 + . . scaffold1009 GLEAN mRNA 486872 502575 0.999001 - . ID=CGI_10028738; scaffold1009 WUBlastX DNA_hAT 494087 494239 89 + . . scaffold1009 GLEAN mRNA 486872 502575 0.999001 - . ID=CGI_10028738; scaffold1009 WUBlastX DNA_hAT 494582 494689 47 + . . scaffold1009 GLEAN mRNA 486872 502575 0.999001 - . ID=CGI_10028738; scaffold1009 WUBlastX DNA_hAT 497569 497703 35 + . . scaffold1009 GLEAN mRNA 486872 502575 0.999001 - . ID=CGI_10028738; scaffold1244 WUBlastX LTR_Gypsy 126140 126520 231 - . . scaffold1244 GLEAN mRNA 121009 134472 0.646055 + . ID=CGI_10020823; scaffold1235 WUBlastX LTR_Gypsy 24706 25332 23 + . . scaffold1235 GLEAN mRNA 24706 26124 0.999999 + . ID=CGI_10011829; scaffold1235 WUBlastX LTR_Gypsy 24589 25332 23 + . . scaffold1235 GLEAN mRNA 16837 34725 0.738057 - . ID=CGI_10011828; scaffold102 WUBlastX DNA_TcMar-Fot1 257590 257889 43 - . . scaffold102 GLEAN mRNA 251987 267295 0.910885 - . ID=CGI_10028430; scaffold42246 WUBlastX DNA_hAT 46676 46780 33 + . . scaffold42246 GLEAN mRNA 5727 48525 0.65558 + . ID=CGI_10006474; scaffold42246 WUBlastX DNA_hAT 47144 47350 47 + . . scaffold42246 GLEAN mRNA 5727 48525 0.65558 + . ID=CGI_10006474; scaffold1541 WUBlastX DNA_hAT-Tip100 470187 470270 26 + . . scaffold1541 GLEAN mRNA 469948 471973 0.864419 + . ID=CGI_10017901; scaffold1703 WUBlastX LTR_Ngaro 209150 209296 70 - . . scaffold1703 GLEAN mRNA 209003 209413 0.77673 - . ID=CGI_10023048; scaffold1888 WUBlastX LINE_L2 147517 147957 52 + . . scaffold1888 GLEAN mRNA 114572 148611 0.858074 + . ID=CGI_10013297; C32216 WUBlastX DNA_hAT-hATw 6219 6458 22 + . . C32216 GLEAN mRNA 4198 8009 0.78994 + . ID=CGI_10000865; scaffold352 WUBlastX DNA_Harbinger 10247 10426 49 - . . scaffold352 GLEAN mRNA 9441 13919 0.738574 - . ID=CGI_10012242; scaffold1024 WUBlastX DNA_Kolobok 293079 293225 26 - . . scaffold1024 GLEAN mRNA 286016 307543 0.666664 - . ID=CGI_10028532; scaffold42948 WUBlastX DNA_TcMar-Marin 195557 195640 48 + . . scaffold42948 GLEAN mRNA 186071 196987 0.150089 + . ID=CGI_10008236; scaffold1016 WUBlastX DNA_P 283942 284322 92 - . . scaffold1016 GLEAN mRNA 272595 292035 0.804509 - . ID=CGI_10016891; scaffold6 WUBlastX LINE_Penelope 121556 121660 29 + . . scaffold6 GLEAN mRNA 120164 144778 0.978215 - . ID=CGI_10022297; scaffold247 WUBlastX LINE_RTE-BovB 204681 204884 22 - . . scaffold247 GLEAN mRNA 197989 208519 0.419557 + . ID=CGI_10018593; scaffold1080 WUBlastX DNA_En-Spm 263365 264198 25 - . . scaffold1080 GLEAN mRNA 255570 275608 0.591325 - . ID=CGI_10012678; scaffold487 WUBlastX LINE_RTE-X 484013 484210 41 - . . scaffold487 GLEAN mRNA 478464 485762 0.999375 + . ID=CGI_10017056; scaffold116 WUBlastX LTR_Gypsy 33911 34084 28 - . . scaffold116 GLEAN mRNA 33800 34222 1 - . ID=CGI_10009410; scaffold42366 WUBlastX DNA_hAT 71295 71453 88 + . . scaffold42366 GLEAN mRNA 24937 76161 0.245386 + . ID=CGI_10006699; scaffold987 WUBlastX LTR_DIRS 88245 88679 95 - . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold1800 WUBlastX LTR_Gypsy 310110 310313 30 + . . scaffold1800 GLEAN mRNA 309587 323793 0.999996 + . ID=CGI_10016406; scaffold853 WUBlastX DNA_Kolobok-Hyd 208049 208345 31 + . . scaffold853 GLEAN mRNA 204099 212863 1 - . ID=CGI_10017494; scaffold853 WUBlastX DNA_Kolobok-Hyd 208049 208345 31 + . . scaffold853 GLEAN mRNA 206619 210945 0.253956 + . ID=CGI_10017495; scaffold714 WUBlastX LINE_RTE-X 248414 248509 37 + . . scaffold714 GLEAN mRNA 247457 275977 0.677949 + . ID=CGI_10016643; scaffold601 WUBlastX LINE_RTE-X 834319 834629 77 + . . scaffold601 GLEAN mRNA 814190 834629 0.512568 + . ID=CGI_10026849; scaffold1868 WUBlastX LINE_RTE-X 144493 144900 53 - . . scaffold1868 GLEAN mRNA 144442 144990 0.993839 - . ID=CGI_10007983; scaffold660 WUBlastX DNA_hAT-Tip100 201727 201969 102 + . . scaffold660 GLEAN mRNA 201436 201984 0.999661 + . ID=CGI_10013753; scaffold37880 WUBlastX DNA_TcMar-Ant1 13487 13801 103 + . . scaffold37880 GLEAN mRNA 2966 17075 0.52423 - . ID=CGI_10002532; scaffold44064 WUBlastX LINE_CR1 215321 215455 51 + . . scaffold44064 GLEAN mRNA 201756 215782 0.297034 - . ID=CGI_10016763; scaffold12 WUBlastX LTR_Gypsy 345338 345514 20 + . . scaffold12 GLEAN mRNA 326477 354530 0.999321 + . ID=CGI_10018042; scaffold172 WUBlastX LTR_Gypsy 15798 15950 60 + . . scaffold172 GLEAN mRNA 5002 17897 0.999274 - . ID=CGI_10013508; scaffold20 WUBlastX LTR_Gypsy 752667 753041 84 - . . scaffold20 GLEAN mRNA 752421 753041 1 - . ID=CGI_10023596; scaffold40680 WUBlastX DNA_En-Spm 29847 30188 100 - . . scaffold40680 GLEAN mRNA 16 36776 0.246623 - . ID=CGI_10004353; scaffold664 WUBlastX DNA_Kolobok-Hyd 556961 557128 41 + . . scaffold664 GLEAN mRNA 547583 596494 0.239728 + . ID=CGI_10021456; scaffold664 WUBlastX DNA_Kolobok-Hyd 558102 558305 52 + . . scaffold664 GLEAN mRNA 547583 596494 0.239728 + . ID=CGI_10021456; scaffold43 WUBlastX LINE_L1 574468 574809 74 + . . scaffold43 GLEAN mRNA 558255 582492 0.807709 - . ID=CGI_10021361; scaffold31 WUBlastX LINE_RTE-BovB 15264 15599 77 - . . scaffold31 GLEAN mRNA 7584 16133 0.792688 - . ID=CGI_10013551; scaffold579 WUBlastX LINE_RTE-BovB 268089 268334 74 + . . scaffold579 GLEAN mRNA 263302 283849 0.988891 + . ID=CGI_10011268; scaffold461 WUBlastX LINE_RTE-X 505588 505731 58 + . . scaffold461 GLEAN mRNA 502998 509730 0.979735 + . ID=CGI_10020117; scaffold461 WUBlastX LINE_RTE-X 506053 506301 28 + . . scaffold461 GLEAN mRNA 502998 509730 0.979735 + . ID=CGI_10020117; scaffold783 WUBlastX LINE_RTE-X 136101 136343 74 - . . scaffold783 GLEAN mRNA 131104 140635 0.99762 + . ID=CGI_10011677; scaffold290 WUBlastX LINE_RTE-X 187617 188204 76 + . . scaffold290 GLEAN mRNA 184166 208505 0.688957 - . ID=CGI_10018539; scaffold1889 WUBlastX LINE_RTE-X 207440 207661 88 + . . scaffold1889 GLEAN mRNA 199666 208024 0.836613 - . ID=CGI_10019608; scaffold1895 WUBlastX LINE_L1-Tx1 22871 23146 64 + . . scaffold1895 GLEAN mRNA 10144 35398 0.383689 - . ID=CGI_10010969; scaffold1188 WUBlastX LINE_CR1-L2 656893 657156 92 - . . scaffold1188 GLEAN mRNA 648038 660238 0.573951 - . ID=CGI_10025493; scaffold412 WUBlastX LTR_Ngaro 125024 125329 81 + . . scaffold412 GLEAN mRNA 49163 134272 0.261275 - . ID=CGI_10018559; scaffold37148 WUBlastX LINE_RTE-BovB 28863 29117 58 + . . scaffold37148 GLEAN mRNA 9385 30637 0.645987 - . ID=CGI_10002291; scaffold177 WUBlastX DNA_Harbinger 284736 285125 50 - . . scaffold177 GLEAN mRNA 240974 299351 0.498178 - . ID=CGI_10016064; scaffold1154 WUBlastX DNA_Kolobok-IS4 300308 300589 69 - . . scaffold1154 GLEAN mRNA 300263 342126 0.0862783 - . ID=CGI_10026162; scaffold535 WUBlastX DNA_IS4EU 2812 3006 28 + . . scaffold535 GLEAN mRNA 109 7288 0.491277 + . ID=CGI_10020280; scaffold535 WUBlastX DNA_IS4EU 3753 3890 59 + . . scaffold535 GLEAN mRNA 109 7288 0.491277 + . ID=CGI_10020280; C32318 WUBlastX LINE_L1 7548 7802 93 - . . C32318 GLEAN mRNA 2480 10983 0.999998 + . ID=CGI_10000883; scaffold1745 WUBlastX LINE_RTE-X 79241 79411 93 - . . scaffold1745 GLEAN mRNA 77513 92057 0.437746 + . ID=CGI_10005405; scaffold536 WUBlastX LINE_RTE-X 86304 86513 97 - . . scaffold536 GLEAN mRNA 68482 93233 0.999348 + . ID=CGI_10006670; scaffold43182 WUBlastX DNA_Sola 38508 38978 30 - . . scaffold43182 GLEAN mRNA 25821 44165 0.795977 + . ID=CGI_10009197; scaffold670 WUBlastX LINE_CR1-L2 134285 134710 70 + . . scaffold670 GLEAN mRNA 126176 136910 0.999932 + . ID=CGI_10007410; scaffold1052 WUBlastX LINE_L2 75143 75502 109 - . . scaffold1052 GLEAN mRNA 59893 79725 0.988141 - . ID=CGI_10005470; scaffold99 WUBlastX LINE_L2 610600 610878 49 - . . scaffold99 GLEAN mRNA 591642 622309 0.948988 + . ID=CGI_10021214; scaffold99 WUBlastX LINE_L2 610600 610878 49 - . . scaffold99 GLEAN mRNA 601112 622168 1 - . ID=CGI_10021215; scaffold398 WUBlastX LINE_L2 4767 4877 20 - . . scaffold398 GLEAN mRNA 896 15325 0.911211 + . ID=CGI_10004360; scaffold873 WUBlastX DNA_Harbinger 231620 231802 56 + . . scaffold873 GLEAN mRNA 230650 233202 0.99998 + . ID=CGI_10014424; scaffold917 WUBlastX DNA_Harbinger 155058 155315 21 + . . scaffold917 GLEAN mRNA 150992 179733 0.207364 - . ID=CGI_10011084; scaffold1107 WUBlastX LINE_L1 42599 42946 80 - . . scaffold1107 GLEAN mRNA 25384 68274 0.797312 + . ID=CGI_10004768; scaffold369 WUBlastX LINE_Penelope 161507 161893 31 + . . scaffold369 GLEAN mRNA 147278 163434 0.70167 + . ID=CGI_10006958; scaffold43258 WUBlastX LINE_RTE-X 143512 143784 56 - . . scaffold43258 GLEAN mRNA 134740 154295 0.483992 + . ID=CGI_10009634; scaffold143 WUBlastX LINE_L1-Tx1 193069 193398 102 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold42486 WUBlastX DNA_Academ 153670 153948 44 - . . scaffold42486 GLEAN mRNA 141403 154918 0.998251 - . ID=CGI_10006982; scaffold41898 WUBlastX LTR_Gypsy 98086 98208 33 - . . scaffold41898 GLEAN mRNA 97771 99228 0.999846 - . ID=CGI_10005832; scaffold1788 WUBlastX DNA_IS4EU 64040 64144 55 + . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold40094 WUBlastX DNA_Zator 63816 64013 74 - . . scaffold40094 GLEAN mRNA 58391 65550 1 + . ID=CGI_10003842; scaffold40094 WUBlastX DNA_Zator 64172 64255 30 - . . scaffold40094 GLEAN mRNA 58391 65550 1 + . ID=CGI_10003842; scaffold236 WUBlastX DNA_Kolobok 231620 231805 65 - . . scaffold236 GLEAN mRNA 231446 232793 0.958487 - . ID=CGI_10018140; scaffold402 WUBlastX LINE_L1-Tx1 517439 517660 40 + . . scaffold402 GLEAN mRNA 514262 530560 0.999749 + . ID=CGI_10019333; scaffold583 WUBlastX LTR_Gypsy 30245 30553 129 + . . scaffold583 GLEAN mRNA 11252 30786 0.538908 + . ID=CGI_10023603; scaffold712 WUBlastX DNA_TcMar-Tc1 440552 441142 134 - . . scaffold712 GLEAN mRNA 407397 462275 0.613636 - . ID=CGI_10016489; scaffold351 WUBlastX LTR_ERV1 184943 185146 20 - . . scaffold351 GLEAN mRNA 182214 186264 0.847521 + . ID=CGI_10022595; scaffold317 WUBlastX DNA_Sola 143977 144135 46 + . . scaffold317 GLEAN mRNA 123249 146317 0.852803 + . ID=CGI_10019345; scaffold393 WUBlastX LINE_CR1 1043385 1043633 21 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold980 WUBlastX LTR_Gypsy 572275 572397 31 + . . scaffold980 GLEAN mRNA 571438 573129 0.991145 + . ID=CGI_10019247; scaffold257 WUBlastX LTR_Gypsy 429373 429495 31 - . . scaffold257 GLEAN mRNA 408517 430332 0.376756 - . ID=CGI_10027910; scaffold257 WUBlastX LTR_Gypsy 429373 429495 31 - . . scaffold257 GLEAN mRNA 415447 429822 0.479397 + . ID=CGI_10027911; scaffold288 WUBlastX LTR_Gypsy 598102 598224 31 - . . scaffold288 GLEAN mRNA 597379 599061 0.999238 - . ID=CGI_10020682; scaffold924 WUBlastX DNA_Sola 39924 40019 74 + . . scaffold924 GLEAN mRNA 39924 42016 0.322694 + . ID=CGI_10006838; scaffold924 WUBlastX DNA_Sola 40732 40965 34 + . . scaffold924 GLEAN mRNA 39924 42016 0.322694 + . ID=CGI_10006838; scaffold115 WUBlastX LINE_L2 580266 581072 72 + . . scaffold115 GLEAN mRNA 575453 585479 0.845977 + . ID=CGI_10021407; scaffold1675 WUBlastX LTR_DIRS 10382 10864 58 - . . scaffold1675 GLEAN mRNA 745 11817 0.679204 - . ID=CGI_10001288; scaffold38854 WUBlastX LTR_Gypsy 31547 31867 151 + . . scaffold38854 GLEAN mRNA 27679 32695 0.651134 - . ID=CGI_10003012; scaffold578 WUBlastX DNA_Kolobok 22242 22397 48 + . . scaffold578 GLEAN mRNA 19761 26602 0.244564 - . ID=CGI_10015109; scaffold41346 WUBlastX DNA_TcMar-Marin 18266 18883 63 - . . scaffold41346 GLEAN mRNA 15464 31699 0.862252 + . ID=CGI_10004998; scaffold508 WUBlastX LTR_Gypsy 12280 13788 987 - . . scaffold508 GLEAN mRNA 12073 17406 0.968836 - . ID=CGI_10011191; scaffold621 WUBlastX DNA_Academ 316211 316930 149 - . . scaffold621 GLEAN mRNA 265576 316930 0.261056 - . ID=CGI_10017677; scaffold412 WUBlastX LINE_CR1-L2 380663 380782 23 + . . scaffold412 GLEAN mRNA 380663 381094 0.999998 + . ID=CGI_10018577; C35282 WUBlastX LTR_Gypsy 1406 1957 123 + . . C35282 GLEAN mRNA 1142 2704 0.999228 + . ID=CGI_10001456; scaffold1104 WUBlastX DNA_IS4EU 526054 526491 94 - . . scaffold1104 GLEAN mRNA 524853 533185 0.523865 + . ID=CGI_10020392; scaffold1104 WUBlastX DNA_IS4EU 526054 526491 94 - . . scaffold1104 GLEAN mRNA 502059 528268 0.99448 - . ID=CGI_10020391; scaffold1104 WUBlastX DNA_IS4EU 526457 526663 70 - . . scaffold1104 GLEAN mRNA 524853 533185 0.523865 + . ID=CGI_10020392; scaffold1104 WUBlastX DNA_IS4EU 526457 526663 70 - . . scaffold1104 GLEAN mRNA 502059 528268 0.99448 - . ID=CGI_10020391; scaffold128 WUBlastX LINE_Penelope 93477 93617 41 - . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; scaffold162 WUBlastX LINE_L1-Tx1 129879 130352 136 - . . scaffold162 GLEAN mRNA 125039 158542 0.510942 - . ID=CGI_10014090; scaffold43170 WUBlastX DNA_Zator 116007 116393 86 - . . scaffold43170 GLEAN mRNA 109769 118628 0.999676 - . ID=CGI_10009102; scaffold43170 WUBlastX DNA_Zator 116007 116393 86 - . . scaffold43170 GLEAN mRNA 114474 133457 0.997994 + . ID=CGI_10009103; scaffold43170 WUBlastX DNA_Zator 116499 118628 922 - . . scaffold43170 GLEAN mRNA 109769 118628 0.999676 - . ID=CGI_10009102; scaffold43170 WUBlastX DNA_Zator 116499 118718 922 - . . scaffold43170 GLEAN mRNA 114474 133457 0.997994 + . ID=CGI_10009103; scaffold546 WUBlastX LINE_L1-Tx1 144591 145736 812 + . . scaffold546 GLEAN mRNA 136572 153074 0.999871 - . ID=CGI_10020995; scaffold546 WUBlastX LINE_L1-Tx1 145730 146524 102 + . . scaffold546 GLEAN mRNA 136572 153074 0.999871 - . ID=CGI_10020995; scaffold695 WUBlastX DNA_Harbinger 7118 7453 178 - . . scaffold695 GLEAN mRNA 4125 9096 0.716645 + . ID=CGI_10023266; scaffold43064 WUBlastX LINE_L1-Tx1 183814 184188 76 + . . scaffold43064 GLEAN mRNA 165128 188165 0.499838 + . ID=CGI_10008633; scaffold211 WUBlastX LINE_L1-Tx1 701343 702983 615 + . . scaffold211 GLEAN mRNA 691120 715917 0.0754063 + . ID=CGI_10026960; scaffold11 WUBlastX LTR_Gypsy 61843 62247 73 - . . scaffold11 GLEAN mRNA 61086 64490 0.65426 - . ID=CGI_10015522; scaffold40894 WUBlastX DNA_Kolobok 97251 98324 102 - . . scaffold40894 GLEAN mRNA 88006 100838 0.998256 - . ID=CGI_10004541; scaffold536 WUBlastX LINE_RTE-X 85517 85687 23 - . . scaffold536 GLEAN mRNA 68482 93233 0.999348 + . ID=CGI_10006670; scaffold536 WUBlastX LINE_RTE-X 85795 86067 21 - . . scaffold536 GLEAN mRNA 68482 93233 0.999348 + . ID=CGI_10006670; scaffold753 WUBlastX LINE_RTE-X 313050 313820 175 - . . scaffold753 GLEAN mRNA 307757 329663 0.499275 + . ID=CGI_10014210; scaffold350 WUBlastX DNA_Academ 1105 1123 27 - . . scaffold350 GLEAN mRNA 1105 3206 0.996578 - . ID=CGI_10000780; scaffold1714 WUBlastX LINE_CR1 311877 312044 43 - . . scaffold1714 GLEAN mRNA 306589 325335 0.999557 + . ID=CGI_10013680; scaffold1680 WUBlastX LTR_Gypsy-Cigr 69914 70450 209 + . . scaffold1680 GLEAN mRNA 60137 87573 0.648461 - . ID=CGI_10004140; scaffold1119 WUBlastX LINE_L2 140738 140806 21 - . . scaffold1119 GLEAN mRNA 133915 143385 0.654676 + . ID=CGI_10009604; scaffold1233 WUBlastX DNA_IS4EU 11448 11573 35 + . . scaffold1233 GLEAN mRNA 818 16086 0.387616 - . ID=CGI_10003098; scaffold1233 WUBlastX DNA_IS4EU 12271 12381 31 + . . scaffold1233 GLEAN mRNA 818 16086 0.387616 - . ID=CGI_10003098; scaffold1233 WUBlastX DNA_IS4EU 12573 12803 90 + . . scaffold1233 GLEAN mRNA 818 16086 0.387616 - . ID=CGI_10003098; scaffold1253 WUBlastX LTR_Gypsy 42057 43676 1348 + . . scaffold1253 GLEAN mRNA 16186 44891 0.331456 + . ID=CGI_10004818; scaffold1639 WUBlastX DNA_Harbinger 35354 35710 103 + . . scaffold1639 GLEAN mRNA 27466 42582 0.863535 + . ID=CGI_10005437; scaffold35896 WUBlastX LINE_L2 25839 26030 21 - . . scaffold35896 GLEAN mRNA 578 26444 0.497805 - . ID=CGI_10001642; scaffold1750 WUBlastX LTR_Pao 636442 636777 150 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold580 WUBlastX LTR_Pao 542911 543000 53 - . . scaffold580 GLEAN mRNA 534985 547949 0.999377 + . ID=CGI_10020515; scaffold580 WUBlastX LTR_Pao 542997 543143 80 - . . scaffold580 GLEAN mRNA 534985 547949 0.999377 + . ID=CGI_10020515; scaffold43648 WUBlastX DNA_Kolobok 232110 232649 122 + . . scaffold43648 GLEAN mRNA 231599 237776 0.973881 - . ID=CGI_10011593; scaffold43038 WUBlastX LINE_RTE-X 97661 98347 109 - . . scaffold43038 GLEAN mRNA 85348 101738 0.999351 - . ID=CGI_10008443; scaffold43038 WUBlastX LINE_RTE-X 97661 98347 109 - . . scaffold43038 GLEAN mRNA 95367 105637 0.999027 + . ID=CGI_10008444; scaffold31334 WUBlastX DNA_Sola 235 1062 182 + . . scaffold31334 GLEAN mRNA 85 1065 0.999996 + . ID=CGI_10000734; scaffold41356 WUBlastX LTR_Ngaro 12733 13194 113 - . . scaffold41356 GLEAN mRNA 5844 20035 0.990026 - . ID=CGI_10004993; scaffold394 WUBlastX LTR_DIRS 436623 437234 201 + . . scaffold394 GLEAN mRNA 435520 450975 0.532272 + . ID=CGI_10022085; scaffold143 WUBlastX LINE_L1 211939 212244 34 - . . scaffold143 GLEAN mRNA 211939 221171 0.564856 - . ID=CGI_10010016; scaffold1315 WUBlastX LINE_L1-Tx1 26974 27405 49 + . . scaffold1315 GLEAN mRNA 24729 31202 0.999612 + . ID=CGI_10021591; scaffold1315 WUBlastX LINE_L1-Tx1 28433 28840 34 + . . scaffold1315 GLEAN mRNA 24729 31202 0.999612 + . ID=CGI_10021591; scaffold1588 WUBlastX LINE_RTE-X 71729 72427 160 + . . scaffold1588 GLEAN mRNA 56027 117187 0.840099 - . ID=CGI_10014772; scaffold1680 WUBlastX LTR_Gypsy 70847 73489 1247 + . . scaffold1680 GLEAN mRNA 60137 87573 0.648461 - . ID=CGI_10004140; scaffold1350 WUBlastX LINE_RTE-BovB 397821 397940 53 - . . scaffold1350 GLEAN mRNA 393414 411683 0.728523 + . ID=CGI_10017317; C36028 WUBlastX LINE_RTE-X 28465 28848 51 + . . C36028 GLEAN mRNA 28396 30132 0.694438 + . ID=CGI_10001744; C36028 WUBlastX LINE_RTE-X 29041 30036 100 + . . C36028 GLEAN mRNA 28396 30132 0.694438 + . ID=CGI_10001744; scaffold1 WUBlastX DNA_TcMar-Tc1 252414 253052 109 - . . scaffold1 GLEAN mRNA 239740 257002 0.998426 - . ID=CGI_10013473; scaffold198 WUBlastX LTR_Gypsy 549713 553234 1845 + . . scaffold198 GLEAN mRNA 532542 554203 0.338011 + . ID=CGI_10027815; scaffold223 WUBlastX LTR_Gypsy 5041 5700 226 - . . scaffold223 GLEAN mRNA 942 7795 0.487602 - . ID=CGI_10012904; scaffold962 WUBlastX LINE_RTE-BovB 898151 899161 141 - . . scaffold962 GLEAN mRNA 895122 910659 0.455688 + . ID=CGI_10027670; scaffold169 WUBlastX DNA_Sola 804372 804992 180 + . . scaffold169 GLEAN mRNA 802679 805184 0.636202 + . ID=CGI_10022966; scaffold38876 WUBlastX LTR_Gypsy 31253 31381 25 + . . scaffold38876 GLEAN mRNA 31001 32849 0.945662 + . ID=CGI_10003027; scaffold58 WUBlastX DNA_Crypton 460125 460685 98 - . . scaffold58 GLEAN mRNA 456330 469512 0.944736 - . ID=CGI_10023145; scaffold58 WUBlastX DNA_Crypton 460840 461019 78 - . . scaffold58 GLEAN mRNA 456330 469512 0.944736 - . ID=CGI_10023145; scaffold43150 WUBlastX LINE_RTE-X 105065 105421 217 + . . scaffold43150 GLEAN mRNA 101388 111532 0.998791 - . ID=CGI_10009032; scaffold43150 WUBlastX LINE_RTE-X 105065 105093 217 + . . scaffold43150 GLEAN mRNA 104548 105093 1 + . ID=CGI_10009033; scaffold1098 WUBlastX DNA_TcMar-Tc1 264772 264939 71 + . . scaffold1098 GLEAN mRNA 223579 266249 0.353937 - . ID=CGI_10010798; scaffold721 WUBlastX LINE_L2 82922 83014 42 + . . scaffold721 GLEAN mRNA 68079 89248 0.992034 + . ID=CGI_10021995; scaffold40564 WUBlastX LINE_L1-Tx1 7416 7808 78 + . . scaffold40564 GLEAN mRNA 6674 28756 0.488599 + . ID=CGI_10004207; scaffold223 WUBlastX DNA_Harbinger 283616 284398 226 + . . scaffold223 GLEAN mRNA 275585 285591 0.814847 - . ID=CGI_10012923; scaffold102 WUBlastX LINE_R2-Hero 1149339 1149926 256 - . . scaffold102 GLEAN mRNA 1142791 1154685 0.999233 - . ID=CGI_10028474; scaffold347 WUBlastX LINE_CR1 127494 127868 24 + . . scaffold347 GLEAN mRNA 127096 135007 0.556255 - . ID=CGI_10021779; scaffold292 WUBlastX DNA_TcMar-Marin 38110 38349 166 + . . scaffold292 GLEAN mRNA 29262 46507 0.999144 + . ID=CGI_10003527; scaffold36936 WUBlastX LTR_Pao 17375 17881 283 - . . scaffold36936 GLEAN mRNA 314 25498 0.932631 - . ID=CGI_10002182; scaffold191 WUBlastX LINE_RTE-X 554075 554263 57 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold37006 WUBlastX LTR_DIRS 26832 27212 245 - . . scaffold37006 GLEAN mRNA 18201 34112 0.554997 + . ID=CGI_10002223; scaffold102 WUBlastX LINE_RTE-X 367654 368589 227 - . . scaffold102 GLEAN mRNA 367591 368589 0.999999 - . ID=CGI_10028433; scaffold588 WUBlastX DNA_Harbinger 23307 23684 93 + . . scaffold588 GLEAN mRNA 7475 24618 0.999942 + . ID=CGI_10016208; scaffold1665 WUBlastX LINE_RTE-X 416347 416649 145 + . . scaffold1665 GLEAN mRNA 414201 417723 0.990268 - . ID=CGI_10015218; scaffold40282 WUBlastX LTR_Gypsy 73192 73506 163 - . . scaffold40282 GLEAN mRNA 56091 83549 0.539379 + . ID=CGI_10004002; scaffold866 WUBlastX LINE_RTE-X 94615 94965 193 + . . scaffold866 GLEAN mRNA 85549 108844 0.993209 + . ID=CGI_10004749; scaffold866 WUBlastX LINE_RTE-X 95025 95159 66 + . . scaffold866 GLEAN mRNA 85549 108844 0.993209 + . ID=CGI_10004749; scaffold866 WUBlastX LINE_RTE-X 95287 95562 95 + . . scaffold866 GLEAN mRNA 85549 108844 0.993209 + . ID=CGI_10004749; scaffold866 WUBlastX LINE_RTE-X 95666 95749 48 + . . scaffold866 GLEAN mRNA 85549 108844 0.993209 + . ID=CGI_10004749; scaffold1228 WUBlastX LINE_L2 476604 476894 25 - . . scaffold1228 GLEAN mRNA 466655 478477 0.528865 - . ID=CGI_10017006; scaffold335 WUBlastX LTR_DIRS 51363 52499 293 - . . scaffold335 GLEAN mRNA 36330 53474 0.791399 - . ID=CGI_10017083; scaffold787 WUBlastX DNA_hAT-Blackja 233858 234856 365 - . . scaffold787 GLEAN mRNA 219328 253031 0.970021 - . ID=CGI_10011650; scaffold1715 WUBlastX LINE_Penelope 326707 327936 231 + . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold617 WUBlastX LINE_RTE-X 115059 115994 227 - . . scaffold617 GLEAN mRNA 115032 115994 0.999999 - . ID=CGI_10012723; scaffold215 WUBlastX LINE_RTE-BovB 155436 155600 29 - . . scaffold215 GLEAN mRNA 149757 156902 0.354656 - . ID=CGI_10006647; scaffold54 WUBlastX LTR_Gypsy 80614 80853 79 + . . scaffold54 GLEAN mRNA 79485 84388 0.939929 + . ID=CGI_10023654; scaffold1717 WUBlastX LINE_CR1-L2 41925 43031 254 - . . scaffold1717 GLEAN mRNA 33205 46915 0.558386 + . ID=CGI_10013390; scaffold86 WUBlastX DNA_Academ 398522 398896 95 + . . scaffold86 GLEAN mRNA 398522 403007 0.217037 + . ID=CGI_10028152; scaffold86 WUBlastX DNA_Academ 398939 399580 226 + . . scaffold86 GLEAN mRNA 398522 403007 0.217037 + . ID=CGI_10028152; scaffold172 WUBlastX LTR_Gypsy-Cigr 16342 16524 71 + . . scaffold172 GLEAN mRNA 5002 17897 0.999274 - . ID=CGI_10013508; scaffold172 WUBlastX LTR_Gypsy-Cigr 16848 17732 174 + . . scaffold172 GLEAN mRNA 5002 17897 0.999274 - . ID=CGI_10013508; scaffold1157 WUBlastX LINE_L2 216512 217384 403 - . . scaffold1157 GLEAN mRNA 212503 240416 0.462871 - . ID=CGI_10011221; scaffold1823 WUBlastX LINE_L2 17914 18816 406 - . . scaffold1823 GLEAN mRNA 671 22392 0.99778 + . ID=CGI_10005168; scaffold41650 WUBlastX LINE_CR1-L2 4875 5015 68 - . . scaffold41650 GLEAN mRNA 2732 34982 0.998592 + . ID=CGI_10005337; scaffold1703 WUBlastX DNA_Maverick 221083 222003 273 - . . scaffold1703 GLEAN mRNA 215396 234951 0.309503 + . ID=CGI_10023049; scaffold42210 WUBlastX LINE_L1-Tx1 99791 99952 22 + . . scaffold42210 GLEAN mRNA 98005 111760 0.591926 + . ID=CGI_10006389; scaffold509 WUBlastX LTR_Ngaro 92550 93392 442 + . . scaffold509 GLEAN mRNA 91758 98346 0.858612 - . ID=CGI_10018642; scaffold1625 WUBlastX DNA_TcMar-Tc1 165742 166722 416 - . . scaffold1625 GLEAN mRNA 163230 175754 0.999993 - . ID=CGI_10007533; scaffold42766 WUBlastX DNA_hAT-Tip100 3338 4870 337 - . . scaffold42766 GLEAN mRNA 582 5602 0.982593 - . ID=CGI_10007660; scaffold82 WUBlastX LINE_L1 688407 688580 23 - . . scaffold82 GLEAN mRNA 671230 690151 0.999877 - . ID=CGI_10025267; scaffold128 WUBlastX DNA_Kolobok-IS4 58710 59600 447 - . . scaffold128 GLEAN mRNA 54342 63516 0.993133 - . ID=CGI_10021504; scaffold1750 WUBlastX LINE_RTE-X 19603 19773 30 + . . scaffold1750 GLEAN mRNA 8946 22537 0.686268 + . ID=CGI_10021461; scaffold41546 WUBlastX LINE_L1-Tx1 47880 48590 500 - . . scaffold41546 GLEAN mRNA 38795 60206 0.986293 + . ID=CGI_10005268; scaffold162 WUBlastX LINE_L1-Tx1 50132 50389 24 - . . scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; scaffold987 WUBlastX LTR_DIRS 84987 85763 425 - . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold230 WUBlastX LTR_DIRS 215999 217171 441 - . . scaffold230 GLEAN mRNA 178498 220276 0.270873 - . ID=CGI_10011252; scaffold6 WUBlastX LINE_L1 186872 187324 101 + . . scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; scaffold1521 WUBlastX DNA_TcMar-Tc1 217494 217652 117 + . . scaffold1521 GLEAN mRNA 212318 231130 0.482046 + . ID=CGI_10017939; scaffold41228 WUBlastX LINE_L1-Tx1 16862 18052 533 + . . scaffold41228 GLEAN mRNA 12628 43602 0.144447 - . ID=CGI_10004861; scaffold1449 WUBlastX DNA_TcMar-Tc1 73062 73295 78 - . . scaffold1449 GLEAN mRNA 67747 83098 0.84051 + . ID=CGI_10010691; scaffold1244 WUBlastX LTR_Gypsy 124843 125334 140 - . . scaffold1244 GLEAN mRNA 121009 134472 0.646055 + . ID=CGI_10020823; scaffold38374 WUBlastX LTR_Gypsy 14043 14606 43 + . . scaffold38374 GLEAN mRNA 8302 17987 0.957619 + . ID=CGI_10002746; scaffold1532 WUBlastX LINE_RTE-X 410799 411734 478 - . . scaffold1532 GLEAN mRNA 405806 428910 0.729212 + . ID=CGI_10028250; scaffold22 WUBlastX LTR_Pao 1072791 1073057 69 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1073780 1074010 121 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1074457 1074633 73 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1074950 1075342 216 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold393 WUBlastX LINE_RTE-X 1043023 1043235 64 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold748 WUBlastX DNA_IS4EU 169350 170786 832 - . . scaffold748 GLEAN mRNA 165342 172077 0.999394 - . ID=CGI_10012643; scaffold40 WUBlastX DNA_Academ 257378 257460 348 - . . scaffold40 GLEAN mRNA 252666 257460 0.323172 - . ID=CGI_10015106; scaffold39212 WUBlastX DNA_hAT-Tip100 53067 53282 69 - . . scaffold39212 GLEAN mRNA 30679 56961 0.415387 - . ID=CGI_10003233; scaffold168 WUBlastX LINE_CR1 708450 708920 24 + . . scaffold168 GLEAN mRNA 708219 714400 0.999415 + . ID=CGI_10025607; scaffold168 WUBlastX LINE_CR1 708450 708920 24 + . . scaffold168 GLEAN mRNA 695564 710339 0.805022 - . ID=CGI_10025606; scaffold54 WUBlastX LTR_Gypsy 79935 80495 54 + . . scaffold54 GLEAN mRNA 79485 84388 0.939929 + . ID=CGI_10023654; scaffold664 WUBlastX LTR_Gypsy 493594 494001 49 - . . scaffold664 GLEAN mRNA 493536 494227 0.556615 - . ID=CGI_10021452; C35952 WUBlastX LINE_L2 3402 3497 20 + . . C35952 GLEAN mRNA 195 8083 0.544487 + . ID=CGI_10001669; scaffold150 WUBlastX RC_Helitron 754504 754827 50 + . . scaffold150 GLEAN mRNA 732546 756362 0.990752 + . ID=CGI_10028623; scaffold1525 WUBlastX DNA_Kolobok 230221 230433 69 - . . scaffold1525 GLEAN mRNA 230203 231272 0.866333 - . ID=CGI_10013864; scaffold413 WUBlastX DNA_MuDR 489232 489345 31 - . . scaffold413 GLEAN mRNA 489088 490056 0.995102 - . ID=CGI_10022805; scaffold1189 WUBlastX LINE_RTE-X 577114 577407 48 - . . scaffold1189 GLEAN mRNA 568608 577407 0.997699 + . ID=CGI_10023823; scaffold1362 WUBlastX LINE_RTE-X 698106 698309 75 - . . scaffold1362 GLEAN mRNA 691736 715477 0.999895 - . ID=CGI_10023954; scaffold36022 WUBlastX LINE_RTE-X 24492 24632 58 + . . scaffold36022 GLEAN mRNA 22203 29122 0.99999 - . ID=CGI_10001741; scaffold1301 WUBlastX LINE_RTE-X 1244633 1244743 24 + . . scaffold1301 GLEAN mRNA 1240763 1263950 0.99974 - . ID=CGI_10027768; scaffold1832 WUBlastX DNA_Maverick 209116 209256 79 - . . scaffold1832 GLEAN mRNA 208019 210157 0.999949 - . ID=CGI_10018469; scaffold1832 WUBlastX DNA_Maverick 209116 209334 66 - . . scaffold1832 GLEAN mRNA 208019 210157 0.999949 - . ID=CGI_10018469; scaffold1745 WUBlastX LINE_RTE-X 79268 79489 66 - . . scaffold1745 GLEAN mRNA 77513 92057 0.437746 + . ID=CGI_10005405; scaffold78 WUBlastX LTR_Gypsy 38648 38926 69 + . . scaffold78 GLEAN mRNA 33688 45299 0.504298 + . ID=CGI_10006914; scaffold1179 WUBlastX LINE_L1-Tx1 939452 939559 89 - . . scaffold1179 GLEAN mRNA 936280 947260 0.224969 + . ID=CGI_10027393; scaffold1245 WUBlastX LINE_CR1-L2 18684 18785 55 + . . scaffold1245 GLEAN mRNA 8846 27165 0.999947 - . ID=CGI_10009218; scaffold54 WUBlastX DNA_Crypton 666067 666513 43 + . . scaffold54 GLEAN mRNA 665380 671765 0.174144 + . ID=CGI_10023688; scaffold386 WUBlastX DNA_Crypton 191976 192356 95 + . . scaffold386 GLEAN mRNA 191622 192813 0.986955 + . ID=CGI_10012688; scaffold591 WUBlastX LTR_Gypsy 550689 550889 86 + . . scaffold591 GLEAN mRNA 550671 550889 0.638045 + . ID=CGI_10027574; scaffold43676 WUBlastX RC_Helitron 211597 211839 32 + . . scaffold43676 GLEAN mRNA 211597 216385 0.756935 + . ID=CGI_10011734; scaffold230 WUBlastX LTR_ERV1 252418 252777 81 + . . scaffold230 GLEAN mRNA 249649 283875 0.439776 - . ID=CGI_10011254; scaffold681 WUBlastX DNA_TcMar-Fot1 54240 54604 29 - . . scaffold681 GLEAN mRNA 51586 54604 0.96497 + . ID=CGI_10014720; scaffold47 WUBlastX DNA_TcMar-Fot1 25905 26228 92 - . . scaffold47 GLEAN mRNA 20135 33676 0.999415 - . ID=CGI_10002504; scaffold42380 WUBlastX LINE_RTE-X 92802 93017 53 - . . scaffold42380 GLEAN mRNA 82419 110422 1 + . ID=CGI_10006731; scaffold1656 WUBlastX LTR_Ngaro 122733 122897 72 - . . scaffold1656 GLEAN mRNA 116802 126372 0.949613 - . ID=CGI_10006145; scaffold1656 WUBlastX LTR_Ngaro 122947 123090 28 - . . scaffold1656 GLEAN mRNA 116802 126372 0.949613 - . ID=CGI_10006145; scaffold90 WUBlastX LTR_Copia 394570 394668 29 - . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold294 WUBlastX LINE_L1-Tx1 83899 84198 42 - . . scaffold294 GLEAN mRNA 83284 86292 0.549751 - . ID=CGI_10010330; scaffold61 WUBlastX LINE_Jockey 90273 90362 20 + . . scaffold61 GLEAN mRNA 83781 97404 0.999676 - . ID=CGI_10016342; scaffold42840 WUBlastX LINE_CR1 190754 190870 23 + . . scaffold42840 GLEAN mRNA 176465 192129 0.833079 - . ID=CGI_10007840; scaffold1064 WUBlastX LTR_Gypsy 69641 70024 25 + . . scaffold1064 GLEAN mRNA 69641 70024 0.999372 + . ID=CGI_10006537; scaffold37880 WUBlastX LTR_ERVK 36940 37120 48 + . . scaffold37880 GLEAN mRNA 36587 37120 0.99998 + . ID=CGI_10002539; scaffold37880 WUBlastX LTR_ERVK 36940 37155 48 + . . scaffold37880 GLEAN mRNA 32540 47810 0.54365 - . ID=CGI_10002538; scaffold43696 WUBlastX LTR_Gypsy 202604 203065 38 + . . scaffold43696 GLEAN mRNA 200896 208237 0.287333 + . ID=CGI_10011805; scaffold733 WUBlastX LTR_Gypsy 1017931 1018638 43 + . . scaffold733 GLEAN mRNA 1017652 1019905 0.995936 + . ID=CGI_10025901; scaffold1174 WUBlastX DNA_Harbinger 976904 977173 43 - . . scaffold1174 GLEAN mRNA 969973 990165 0.301625 + . ID=CGI_10026076; scaffold38274 WUBlastX LINE_L1 16103 16576 69 + . . scaffold38274 GLEAN mRNA 16103 49739 0.512325 + . ID=CGI_10002704; scaffold1816 WUBlastX DNA_Kolobok-Hyd 266709 267023 58 + . . scaffold1816 GLEAN mRNA 266709 267077 0.575115 + . ID=CGI_10014405; scaffold509 WUBlastX LINE_RTE-BovB 206650 206859 23 - . . scaffold509 GLEAN mRNA 180574 211213 0.998586 - . ID=CGI_10018644; scaffold351 WUBlastX LTR_Gypsy 185051 185131 25 - . . scaffold351 GLEAN mRNA 182214 186264 0.847521 + . ID=CGI_10022595; scaffold247 WUBlastX LTR_DIRS 327910 328143 100 + . . scaffold247 GLEAN mRNA 324544 333278 0.675637 - . ID=CGI_10018594; scaffold42570 WUBlastX LINE_CR1 16554 16694 100 + . . scaffold42570 GLEAN mRNA 8098 32477 0.949085 + . ID=CGI_10007233; scaffold1017 WUBlastX LINE_L2 472470 472589 22 + . . scaffold1017 GLEAN mRNA 472107 472610 0.618241 + . ID=CGI_10025009; scaffold1476 WUBlastX LINE_Jockey 173940 174137 73 - . . scaffold1476 GLEAN mRNA 169615 179488 0.862141 + . ID=CGI_10009826; scaffold1205 WUBlastX DNA_Crypton 109767 109997 90 + . . scaffold1205 GLEAN mRNA 96361 112859 0.994073 - . ID=CGI_10004904; scaffold1532 WUBlastX DNA_IS4EU 397421 397828 89 + . . scaffold1532 GLEAN mRNA 391874 403369 0.462643 + . ID=CGI_10028249; scaffold817 WUBlastX DNA_MuDR 50183 50320 99 - . . scaffold817 GLEAN mRNA 50165 50320 0.712526 - . ID=CGI_10008655; scaffold1813 WUBlastX LINE_RTE-X 113159 113311 22 - . . scaffold1813 GLEAN mRNA 106186 113865 0.957305 + . ID=CGI_10005994; scaffold1179 WUBlastX LINE_L1-Tx1 940955 941167 77 + . . scaffold1179 GLEAN mRNA 936280 947260 0.224969 + . ID=CGI_10027393; scaffold149 WUBlastX LINE_L1-Tx1 348067 348189 56 - . . scaffold149 GLEAN mRNA 308246 356402 0.217101 + . ID=CGI_10025300; scaffold1719 WUBlastX LTR_Ngaro 198487 198609 65 - . . scaffold1719 GLEAN mRNA 177172 199114 0.99732 - . ID=CGI_10014281; scaffold20 WUBlastX DNA_MuDR 31813 31908 41 + . . scaffold20 GLEAN mRNA 25974 32204 0.614933 - . ID=CGI_10023556; scaffold20 WUBlastX DNA_MuDR 31813 31908 41 + . . scaffold20 GLEAN mRNA 28495 32289 0.880534 + . ID=CGI_10023557; scaffold1209 WUBlastX LINE_RTE-X 20265 20609 99 - . . scaffold1209 GLEAN mRNA 16133 36287 0.961312 - . ID=CGI_10007964; scaffold481 WUBlastX LTR_Gypsy 1198941 1199468 103 + . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold400 WUBlastX RC_Helitron 204732 205178 95 - . . scaffold400 GLEAN mRNA 195909 223191 0.813725 - . ID=CGI_10011437; scaffold1347 WUBlastX DNA_IS4EU 26388 26600 43 + . . scaffold1347 GLEAN mRNA 21277 29429 0.935835 - . ID=CGI_10012972; scaffold1616 WUBlastX LINE_Penelope 60043 60405 29 - . . scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; scaffold3 WUBlastX LINE_L1 116935 117486 77 + . . scaffold3 GLEAN mRNA 115118 120562 0.999993 + . ID=CGI_10027276; scaffold165 WUBlastX LINE_L1-Tx1 380877 380990 36 - . . scaffold165 GLEAN mRNA 370842 389362 0.999778 - . ID=CGI_10015331; scaffold165 WUBlastX LINE_L1-Tx1 380959 381249 54 - . . scaffold165 GLEAN mRNA 370842 389362 0.999778 - . ID=CGI_10015331; scaffold1097 WUBlastX LINE_RTE-X 797312 797470 56 + . . scaffold1097 GLEAN mRNA 796138 800546 1 + . ID=CGI_10024550; scaffold1097 WUBlastX LINE_RTE-X 797549 797707 56 + . . scaffold1097 GLEAN mRNA 796138 800546 1 + . ID=CGI_10024550; scaffold522 WUBlastX LINE_RTE-X 224017 224388 68 + . . scaffold522 GLEAN mRNA 220239 233086 0.999661 + . ID=CGI_10020320; scaffold1663 WUBlastX LINE_L1-Tx1 3508 4392 23 + . . scaffold1663 GLEAN mRNA 2082 14069 0.985105 + . ID=CGI_10009862; scaffold42788 WUBlastX LINE_L1-Tx1 123893 124243 89 - . . scaffold42788 GLEAN mRNA 99407 151977 0.339426 + . ID=CGI_10007755; scaffold1101 WUBlastX LINE_CR1 151151 151696 43 - . . scaffold1101 GLEAN mRNA 141921 154245 0.479315 + . ID=CGI_10023014; scaffold79 WUBlastX DNA_Harbinger 257530 257667 33 + . . scaffold79 GLEAN mRNA 257196 271359 0.644901 + . ID=CGI_10024620; scaffold1703 WUBlastX DNA_PiggyBac 92278 92952 100 + . . scaffold1703 GLEAN mRNA 88691 94932 1 + . ID=CGI_10023040; scaffold1616 WUBlastX LINE_RTE-X 62652 63092 57 + . . scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; scaffold459 WUBlastX LINE_RTE-X 92878 92985 38 + . . scaffold459 GLEAN mRNA 88021 99888 0.843454 + . ID=CGI_10018169; scaffold1062 WUBlastX LINE_CR1 8650 8805 139 + . . scaffold1062 GLEAN mRNA 7819 14088 0.462682 - . ID=CGI_10005737; scaffold40980 WUBlastX LINE_L2 89522 89803 95 - . . scaffold40980 GLEAN mRNA 79073 90416 0.999635 - . ID=CGI_10004606; scaffold41344 WUBlastX LINE_L2 113010 113501 111 - . . scaffold41344 GLEAN mRNA 105897 115468 0.999612 + . ID=CGI_10004984; scaffold1867 WUBlastX DNA_Kolobok-Hyd 105219 105260 30 + . . scaffold1867 GLEAN mRNA 102678 111179 0.989687 + . ID=CGI_10006446; scaffold1867 WUBlastX DNA_Kolobok-Hyd 105528 106283 84 + . . scaffold1867 GLEAN mRNA 102678 111179 0.989687 + . ID=CGI_10006446; scaffold41344 WUBlastX LINE_L2 112896 113477 92 - . . scaffold41344 GLEAN mRNA 105897 115468 0.999612 + . ID=CGI_10004984; scaffold925 WUBlastX LINE_L1-Tx1 225506 225646 78 + . . scaffold925 GLEAN mRNA 224843 231445 0.810337 + . ID=CGI_10017420; scaffold925 WUBlastX LINE_L1-Tx1 225639 225800 74 + . . scaffold925 GLEAN mRNA 224843 231445 0.810337 + . ID=CGI_10017420; scaffold461 WUBlastX LINE_L2 293064 293426 109 - . . scaffold461 GLEAN mRNA 287176 297048 0.67711 - . ID=CGI_10020108; scaffold619 WUBlastX LTR_Ngaro 483385 483930 95 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold689 WUBlastX LTR_Gypsy 356234 357646 939 + . . scaffold689 GLEAN mRNA 335137 371615 0.991732 - . ID=CGI_10014831; scaffold1806 WUBlastX LTR_Gypsy 55439 57166 954 - . . scaffold1806 GLEAN mRNA 45331 76950 0.994674 + . ID=CGI_10006156; scaffold1255 WUBlastX LTR_Gypsy 396481 396816 33 + . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold712 WUBlastX LINE_R2-Hero 345336 345470 61 + . . scaffold712 GLEAN mRNA 336086 347992 0.995237 + . ID=CGI_10016485; scaffold37880 WUBlastX DNA_Zator 19327 20724 783 + . . scaffold37880 GLEAN mRNA 19327 21151 1 + . ID=CGI_10002533; scaffold37880 WUBlastX DNA_Zator 20774 21046 71 + . . scaffold37880 GLEAN mRNA 19327 21151 1 + . ID=CGI_10002533; scaffold38626 WUBlastX LINE_CR1 27062 27424 46 - . . scaffold38626 GLEAN mRNA 19577 33145 1 - . ID=CGI_10002868; scaffold1687 WUBlastX DNA_Kolobok-IS4 178891 179523 168 - . . scaffold1687 GLEAN mRNA 175921 180780 0.898283 + . ID=CGI_10008394; scaffold1589 WUBlastX LINE_L1 380546 380629 25 + . . scaffold1589 GLEAN mRNA 370243 390217 0.643157 + . ID=CGI_10024115; scaffold40556 WUBlastX LTR_Ngaro 11614 11856 76 - . . scaffold40556 GLEAN mRNA 9810 16493 0.715629 - . ID=CGI_10004250; scaffold911 WUBlastX DNA_hAT-Tip100 107817 108155 121 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX DNA_hAT-Tip100 108499 108651 26 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold616 WUBlastX LINE_RTE-BovB 314635 316053 309 + . . scaffold616 GLEAN mRNA 306388 329498 0.842956 - . ID=CGI_10015403; scaffold933 WUBlastX LINE_L1 321608 322141 78 + . . scaffold933 GLEAN mRNA 320919 329030 0.990126 + . ID=CGI_10016722; scaffold41588 WUBlastX LINE_RTE-X 61386 62003 73 - . . scaffold41588 GLEAN mRNA 48446 70491 0.998791 - . ID=CGI_10005255; scaffold42096 WUBlastX LINE_RTE-X 105183 105710 112 + . . scaffold42096 GLEAN mRNA 96755 112781 0.947295 - . ID=CGI_10006165; scaffold42990 WUBlastX LINE_RTE-X 86277 86528 157 + . . scaffold42990 GLEAN mRNA 72080 92253 0.276547 + . ID=CGI_10008376; scaffold1163 WUBlastX LINE_L1-Tx1 188744 189298 397 + . . scaffold1163 GLEAN mRNA 183718 207332 0.990122 - . ID=CGI_10009351; scaffold1163 WUBlastX LINE_L1-Tx1 189235 191037 549 + . . scaffold1163 GLEAN mRNA 183718 207332 0.990122 - . ID=CGI_10009351; scaffold315 WUBlastX DNA_hAT 392636 392815 58 - . . scaffold315 GLEAN mRNA 391071 395852 1 - . ID=CGI_10020424; C32222 WUBlastX DNA_Kolobok-IS4 2564 2845 74 - . . C32222 GLEAN mRNA 1824 9853 0.999993 - . ID=CGI_10000866; scaffold1189 WUBlastX LINE_RTE-X 773366 773863 103 - . . scaffold1189 GLEAN mRNA 763568 774596 0.392072 + . ID=CGI_10023832; scaffold1186 WUBlastX LTR_Gypsy 210574 210894 36 + . . scaffold1186 GLEAN mRNA 187396 222353 0.578632 + . ID=CGI_10010597; scaffold1186 WUBlastX LTR_Gypsy 212504 212761 259 + . . scaffold1186 GLEAN mRNA 187396 222353 0.578632 + . ID=CGI_10010597; scaffold1087 WUBlastX LTR_Gypsy 13627 14586 747 + . . scaffold1087 GLEAN mRNA 1458 16224 0.544547 + . ID=CGI_10001183; scaffold1866 WUBlastX LINE_L2 223509 223724 24 + . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold1734 WUBlastX LINE_L2 153895 154668 85 - . . scaffold1734 GLEAN mRNA 152020 160994 0.46186 + . ID=CGI_10010541; scaffold759 WUBlastX LINE_RTE-X 247993 248406 131 - . . scaffold759 GLEAN mRNA 240053 255917 0.998454 - . ID=CGI_10010781; scaffold82 WUBlastX LINE_RTE-X 556448 557005 116 - . . scaffold82 GLEAN mRNA 555436 563532 1 - . ID=CGI_10025265; C33658 WUBlastX DNA_Sola 10830 11423 34 + . . C33658 GLEAN mRNA 10027 15037 0.499831 - . ID=CGI_10001113; scaffold447 WUBlastX LINE_RTE-BovB 335477 335734 65 - . . scaffold447 GLEAN mRNA 332382 354643 0.998297 + . ID=CGI_10014233; scaffold1749 WUBlastX LTR_DIRS 93935 94162 124 - . . scaffold1749 GLEAN mRNA 92161 94954 0.876214 - . ID=CGI_10008254; scaffold1749 WUBlastX LTR_DIRS 94233 94463 76 - . . scaffold1749 GLEAN mRNA 92161 94954 0.876214 - . ID=CGI_10008254; scaffold829 WUBlastX DNA_TcMar-Pogo 592873 593073 73 - . . scaffold829 GLEAN mRNA 577056 600770 0.812815 + . ID=CGI_10021152; scaffold352 WUBlastX LTR_Gypsy-Cigr 153836 154333 189 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold1866 WUBlastX LINE_CR1-L2 247196 247471 94 - . . scaffold1866 GLEAN mRNA 240570 251729 0.651094 - . ID=CGI_10017912; scaffold41970 WUBlastX LINE_L1-Tx1 37629 38153 143 - . . scaffold41970 GLEAN mRNA 24536 41358 0.912364 - . ID=CGI_10005882; scaffold43686 WUBlastX LINE_CR1 16854 17657 372 - . . scaffold43686 GLEAN mRNA 15165 50110 0.498897 + . ID=CGI_10011753; scaffold1831 WUBlastX LINE_L1-Tx1 34302 34775 199 + . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_L1-Tx1 34302 34775 199 + . . scaffold1831 GLEAN mRNA 30321 42527 0.595655 - . ID=CGI_10002913; scaffold1831 WUBlastX LINE_L1-Tx1 34985 37786 952 + . . scaffold1831 GLEAN mRNA 30321 42527 0.595655 - . ID=CGI_10002913; scaffold269 WUBlastX LINE_RTE-X 455669 455890 132 + . . scaffold269 GLEAN mRNA 436625 461028 0.269378 - . ID=CGI_10019006; scaffold203 WUBlastX DNA_Sola 397949 398395 185 + . . scaffold203 GLEAN mRNA 376437 414685 0.482825 + . ID=CGI_10021070; scaffold203 WUBlastX DNA_Sola 397949 398395 185 + . . scaffold203 GLEAN mRNA 380949 400052 0.995245 - . ID=CGI_10021071; scaffold1715 WUBlastX LINE_CR1-L2 570372 570647 128 + . . scaffold1715 GLEAN mRNA 550177 572188 0.407691 + . ID=CGI_10019686; scaffold79 WUBlastX DNA_Harbinger 257455 257634 84 + . . scaffold79 GLEAN mRNA 257196 271359 0.644901 + . ID=CGI_10024620; scaffold896 WUBlastX LINE_L1-Tx1 447535 448401 100 - . . scaffold896 GLEAN mRNA 434715 450263 0.551142 - . ID=CGI_10022850; scaffold1062 WUBlastX LTR_Gypsy-Troyk 100973 101899 280 - . . scaffold1062 GLEAN mRNA 100465 126410 0.975343 - . ID=CGI_10005742; scaffold1062 WUBlastX LTR_Gypsy-Troyk 101848 103113 664 - . . scaffold1062 GLEAN mRNA 100465 126410 0.975343 - . ID=CGI_10005742; scaffold1062 WUBlastX LTR_Gypsy-Troyk 103638 104633 280 - . . scaffold1062 GLEAN mRNA 100465 126410 0.975343 - . ID=CGI_10005742; scaffold1062 WUBlastX LTR_Gypsy-Troyk 104654 104827 109 - . . scaffold1062 GLEAN mRNA 100465 126410 0.975343 - . ID=CGI_10005742; scaffold1574 WUBlastX LINE_I 457849 458280 69 - . . scaffold1574 GLEAN mRNA 452128 459537 0.999957 + . ID=CGI_10016335; scaffold1221 WUBlastX LTR_Gypsy 66955 67323 119 - . . scaffold1221 GLEAN mRNA 56411 69596 0.696179 + . ID=CGI_10019728; scaffold1898 WUBlastX LTR_Pao 311712 312143 379 - . . scaffold1898 GLEAN mRNA 306186 312813 0.889712 + . ID=CGI_10012220; scaffold962 WUBlastX LINE_L1-Tx1 900263 900409 87 - . . scaffold962 GLEAN mRNA 895122 910659 0.455688 + . ID=CGI_10027670; scaffold962 WUBlastX LINE_L1-Tx1 900546 900875 99 - . . scaffold962 GLEAN mRNA 895122 910659 0.455688 + . ID=CGI_10027670; scaffold962 WUBlastX LINE_L1-Tx1 900908 901330 25 - . . scaffold962 GLEAN mRNA 895122 910659 0.455688 + . ID=CGI_10027670; scaffold1067 WUBlastX DNA_Sola 102989 103177 63 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold621 WUBlastX LTR_DIRS 360334 360546 35 - . . scaffold621 GLEAN mRNA 360060 382748 0.996965 - . ID=CGI_10017688; scaffold1831 WUBlastX LINE_L1-Tx1 32940 33647 209 + . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_L1-Tx1 32940 33647 209 + . . scaffold1831 GLEAN mRNA 30321 42527 0.595655 - . ID=CGI_10002913; C34110 WUBlastX DNA_IS4EU 12772 13140 181 + . . C34110 GLEAN mRNA 2583 15463 0.431065 - . ID=CGI_10001212; scaffold230 WUBlastX LTR_DIRS 218644 219177 281 - . . scaffold230 GLEAN mRNA 178498 220276 0.270873 - . ID=CGI_10011252; scaffold40440 WUBlastX LINE_Penelope 52939 53352 59 + . . scaffold40440 GLEAN mRNA 51085 65707 0.320377 - . ID=CGI_10004144; scaffold34596 WUBlastX DNA_TcMar-Tc1 6921 7226 186 + . . scaffold34596 GLEAN mRNA 238 15197 0.650923 - . ID=CGI_10001323; scaffold265 WUBlastX LTR_Pao 22274 22280 256 + . . scaffold265 GLEAN mRNA 21990 22280 0.853024 + . ID=CGI_10003428; scaffold35406 WUBlastX DNA_P 16740 17912 239 - . . scaffold35406 GLEAN mRNA 1505 18996 0.688101 - . ID=CGI_10001499; scaffold128 WUBlastX LINE_Penelope 93337 93471 57 - . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; scaffold128 WUBlastX LINE_Penelope 93477 93545 47 - . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; scaffold128 WUBlastX LINE_Penelope 94223 94699 185 - . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; scaffold632 WUBlastX LINE_L2 512075 512122 22 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold1806 WUBlastX LTR_Gypsy 53261 56743 2768 - . . scaffold1806 GLEAN mRNA 45331 76950 0.994674 + . ID=CGI_10006156; scaffold400 WUBlastX LINE_CR1 266613 266933 45 - . . scaffold400 GLEAN mRNA 262709 267661 0.544852 - . ID=CGI_10011440; scaffold332 WUBlastX LINE_Zorro 404610 404897 24 + . . scaffold332 GLEAN mRNA 403551 412368 0.544643 + . ID=CGI_10020886; scaffold1650 WUBlastX LINE_L2 113636 114451 280 - . . scaffold1650 GLEAN mRNA 102282 130606 0.781405 - . ID=CGI_10017772; scaffold43686 WUBlastX LTR_Gypsy 187636 187923 118 - . . scaffold43686 GLEAN mRNA 172665 193661 0.978405 - . ID=CGI_10011758; scaffold41452 WUBlastX LINE_L2 62494 62748 35 + . . scaffold41452 GLEAN mRNA 56340 65838 0.524499 + . ID=CGI_10005081; scaffold41400 WUBlastX DNA_IS4EU 116075 116506 234 + . . scaffold41400 GLEAN mRNA 116075 116509 1 + . ID=CGI_10005038; scaffold271 WUBlastX LINE_L2 476253 476999 228 + . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold209 WUBlastX DNA_hAT-Tip100 258658 258852 56 - . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX DNA_hAT-Tip100 258852 259121 134 - . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX DNA_hAT-Tip100 259313 259774 214 - . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold896 WUBlastX LINE_L1-Tx1 247207 247377 89 + . . scaffold896 GLEAN mRNA 238310 251019 0.969948 - . ID=CGI_10022839; scaffold896 WUBlastX LINE_L1-Tx1 247609 247836 75 + . . scaffold896 GLEAN mRNA 238310 251019 0.969948 - . ID=CGI_10022839; scaffold896 WUBlastX LINE_L1-Tx1 248048 248671 166 + . . scaffold896 GLEAN mRNA 238310 251019 0.969948 - . ID=CGI_10022839; scaffold678 WUBlastX LINE_L2 647254 647907 46 + . . scaffold678 GLEAN mRNA 636648 664664 0.986036 - . ID=CGI_10026369; scaffold43036 WUBlastX DNA_hAT-Blackja 149711 149761 25 + . . scaffold43036 GLEAN mRNA 148188 171820 0.999804 + . ID=CGI_10008498; scaffold43036 WUBlastX DNA_hAT-Blackja 151848 152153 73 + . . scaffold43036 GLEAN mRNA 148188 171820 0.999804 + . ID=CGI_10008498; scaffold513 WUBlastX LTR_Pao 12229 12957 208 + . . scaffold513 GLEAN mRNA 2113 39536 0.917684 + . ID=CGI_10022134; scaffold39758 WUBlastX LINE_RTE-BovB 60507 60746 81 - . . scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold1500 WUBlastX LTR_Gypsy 185375 185680 156 - . . scaffold1500 GLEAN mRNA 171651 188068 0.692586 - . ID=CGI_10007900; scaffold43844 WUBlastX DNA_TcMar-Marin 186729 187061 243 + . . scaffold43844 GLEAN mRNA 182095 193587 0.917611 + . ID=CGI_10013151; scaffold1888 WUBlastX DNA_TcMar-Pogo 51748 52623 340 + . . scaffold1888 GLEAN mRNA 49981 53887 0.998764 + . ID=CGI_10013292; scaffold162 WUBlastX LINE_RTE-X 53772 54086 100 + . . scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; scaffold980 WUBlastX LINE_RTE-X 77815 78210 80 - . . scaffold980 GLEAN mRNA 43953 80997 0.883179 - . ID=CGI_10019204; scaffold925 WUBlastX LTR_DIRS 442205 442345 28 + . . scaffold925 GLEAN mRNA 430454 444048 0.986598 + . ID=CGI_10017428; scaffold1009 WUBlastX DNA_hAT 495384 495569 53 + . . scaffold1009 GLEAN mRNA 486872 502575 0.999001 - . ID=CGI_10028738; scaffold987 WUBlastX LTR_DIRS 87137 88114 422 - . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold6 WUBlastX LINE_L1-Tx1 198409 198924 155 + . . scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; scaffold22 WUBlastX LTR_Pao 1073554 1073694 45 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold1255 WUBlastX LTR_Gypsy 392496 392702 26 + . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold1611 WUBlastX DNA_TcMar-Fot1 365040 365453 308 - . . scaffold1611 GLEAN mRNA 361117 373640 0.975667 + . ID=CGI_10014334; scaffold1611 WUBlastX DNA_TcMar-Fot1 365470 366165 420 - . . scaffold1611 GLEAN mRNA 361117 373640 0.975667 + . ID=CGI_10014334; scaffold286 WUBlastX LINE_RTE-X 102430 103440 56 + . . scaffold286 GLEAN mRNA 101905 133971 0.984811 - . ID=CGI_10015959; scaffold1896 WUBlastX LTR_Ngaro 484068 485528 762 + . . scaffold1896 GLEAN mRNA 482993 491454 0.999947 + . ID=CGI_10019652; scaffold1815 WUBlastX LTR_Pao 44965 46344 735 - . . scaffold1815 GLEAN mRNA 41524 49047 0.999999 + . ID=CGI_10010261; scaffold534 WUBlastX LTR_Gypsy 69532 69690 32 - . . scaffold534 GLEAN mRNA 66095 75550 0.716363 + . ID=CGI_10005164; scaffold39804 WUBlastX LINE_L2 54761 55000 41 - . . scaffold39804 GLEAN mRNA 45401 55574 0.999999 - . ID=CGI_10003620; scaffold1777 WUBlastX LTR_Ngaro 8858 8926 24 + . . scaffold1777 GLEAN mRNA 5363 10416 0.999547 + . ID=CGI_10003152; scaffold1682 WUBlastX LTR_Ngaro 425662 425901 85 - . . scaffold1682 GLEAN mRNA 421857 429054 0.325277 - . ID=CGI_10016058; scaffold634 WUBlastX LTR_Gypsy 14984 15697 57 - . . scaffold634 GLEAN mRNA 13613 16152 0.502171 - . ID=CGI_10004699; scaffold634 WUBlastX LTR_Gypsy 14984 15697 57 - . . scaffold634 GLEAN mRNA 12476 30002 0.999899 + . ID=CGI_10004698; scaffold425 WUBlastX LTR_Gypsy 1023848 1024009 38 - . . scaffold425 GLEAN mRNA 997658 1029515 0.993112 - . ID=CGI_10026011; scaffold1262 WUBlastX DNA_IS4EU 512042 512293 45 + . . scaffold1262 GLEAN mRNA 503446 523698 0.999351 - . ID=CGI_10018956; scaffold1020 WUBlastX DNA_IS4EU 10748 10828 20 + . . scaffold1020 GLEAN mRNA 10748 11618 1 + . ID=CGI_10012847; scaffold1816 WUBlastX RC_Helitron 120392 120625 49 + . . scaffold1816 GLEAN mRNA 110695 122090 0.998785 + . ID=CGI_10014398; C29438 WUBlastX LINE_L1-Tx1 4037 4129 24 + . . C29438 GLEAN mRNA 533 5889 1 + . ID=CGI_10000534; scaffold911 WUBlastX DNA_Kolobok-Hyd 113744 113782 24 - . . scaffold911 GLEAN mRNA 113243 114834 1 - . ID=CGI_10012138; scaffold911 WUBlastX DNA_Kolobok-Hyd 114322 114456 21 - . . scaffold911 GLEAN mRNA 113243 114834 1 - . ID=CGI_10012138; scaffold257 WUBlastX DNA_TcMar-Marin 1599791 1599871 23 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold37732 WUBlastX DNA_MuDR 46419 46430 70 - . . scaffold37732 GLEAN mRNA 41329 46430 0.987958 + . ID=CGI_10002485; scaffold40836 WUBlastX LINE_Dong-R4 86282 86470 53 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold102 WUBlastX LINE_RTE-BovB 1279108 1279497 39 + . . scaffold102 GLEAN mRNA 1269983 1282871 0.999387 - . ID=CGI_10028488; scaffold457 WUBlastX LINE_L1-Tx1 216666 216851 52 + . . scaffold457 GLEAN mRNA 213050 222173 0.400336 - . ID=CGI_10014534; scaffold513 WUBlastX DNA_Zator 370578 370682 21 + . . scaffold513 GLEAN mRNA 363257 378497 0.79116 + . ID=CGI_10022153; scaffold513 WUBlastX DNA_Zator 370872 371021 28 + . . scaffold513 GLEAN mRNA 363257 378497 0.79116 + . ID=CGI_10022153; scaffold37006 WUBlastX LTR_DIRS 27337 27483 41 - . . scaffold37006 GLEAN mRNA 18201 34112 0.554997 + . ID=CGI_10002223; scaffold38822 WUBlastX LTR_Ngaro 8374 8712 85 + . . scaffold38822 GLEAN mRNA 229 9168 0.999998 - . ID=CGI_10003013; scaffold773 WUBlastX DNA_Harbinger 243319 243492 84 + . . scaffold773 GLEAN mRNA 235107 267865 0.138953 - . ID=CGI_10011348; scaffold113 WUBlastX DNA_MuDR 582164 582379 30 - . . scaffold113 GLEAN mRNA 582017 590807 0.980826 - . ID=CGI_10021294; scaffold43660 WUBlastX LINE_Penelope 47105 47539 58 - . . scaffold43660 GLEAN mRNA 33653 62551 0.969554 - . ID=CGI_10011660; scaffold1895 WUBlastX LINE_RTE-X 188909 189037 73 + . . scaffold1895 GLEAN mRNA 187950 192915 1 + . ID=CGI_10010985; scaffold1895 WUBlastX LINE_RTE-X 188909 189037 73 + . . scaffold1895 GLEAN mRNA 187702 201524 0.585578 - . ID=CGI_10010984; scaffold43940 WUBlastX LINE_RTE-X 334984 335250 49 - . . scaffold43940 GLEAN mRNA 320005 345257 1 - . ID=CGI_10014162; scaffold109 WUBlastX DNA_TcMar-Tc1 253261 253410 29 - . . scaffold109 GLEAN mRNA 221861 297851 0.997753 - . ID=CGI_10022112; scaffold601 WUBlastX LTR_Ngaro 581579 581770 82 + . . scaffold601 GLEAN mRNA 573889 582293 1 - . ID=CGI_10026837; scaffold40440 WUBlastX LTR_Gypsy 34508 35182 70 - . . scaffold40440 GLEAN mRNA 16484 36402 0.811713 + . ID=CGI_10004142; scaffold39268 WUBlastX DNA_Harbinger 43735 43914 63 - . . scaffold39268 GLEAN mRNA 37983 58849 0.736622 - . ID=CGI_10003275; scaffold374 WUBlastX LINE_I 367229 367318 24 + . . scaffold374 GLEAN mRNA 366575 367648 0.447148 + . ID=CGI_10018721; scaffold1603 WUBlastX RC_Helitron 59783 60142 110 + . . scaffold1603 GLEAN mRNA 44108 68236 0.999997 - . ID=CGI_10012816; scaffold117 WUBlastX DNA_Kolobok 247701 247835 33 - . . scaffold117 GLEAN mRNA 233426 248341 0.648025 + . ID=CGI_10016961; scaffold43660 WUBlastX LINE_Penelope 128223 128357 34 - . . scaffold43660 GLEAN mRNA 125748 138289 0.998274 + . ID=CGI_10011663; scaffold20 WUBlastX LINE_Rex-Babar 132898 132942 20 + . . scaffold20 GLEAN mRNA 96944 140245 0.183716 - . ID=CGI_10023563; scaffold20 WUBlastX LINE_Rex-Babar 132898 132942 20 + . . scaffold20 GLEAN mRNA 129233 205190 0.240843 + . ID=CGI_10023564; scaffold43782 WUBlastX LINE_L2 113190 113612 44 - . . scaffold43782 GLEAN mRNA 102494 129639 0.999947 + . ID=CGI_10012366; scaffold1009 WUBlastX LTR_Ngaro 146783 146965 62 - . . scaffold1009 GLEAN mRNA 143472 160185 0.373363 + . ID=CGI_10028719; scaffold634 WUBlastX LTR_Gypsy 14207 14629 95 - . . scaffold634 GLEAN mRNA 13613 16152 0.502171 - . ID=CGI_10004699; scaffold634 WUBlastX LTR_Gypsy 14207 14629 95 - . . scaffold634 GLEAN mRNA 12476 30002 0.999899 + . ID=CGI_10004698; scaffold1462 WUBlastX DNA_Harbinger 359430 359543 68 - . . scaffold1462 GLEAN mRNA 348326 383431 0.995853 + . ID=CGI_10014386; scaffold681 WUBlastX DNA_TcMar-Fot1 54570 54604 79 - . . scaffold681 GLEAN mRNA 51586 54604 0.96497 + . ID=CGI_10014720; scaffold1546 WUBlastX DNA_Kolobok 182221 182379 26 + . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold1546 WUBlastX DNA_Kolobok 182524 182619 49 + . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold784 WUBlastX LINE_RTE-X 850353 850625 94 + . . scaffold784 GLEAN mRNA 848886 854519 0.990187 - . ID=CGI_10024446; scaffold443 WUBlastX LINE_RTE-X 408718 408921 65 - . . scaffold443 GLEAN mRNA 402348 431121 0.212109 - . ID=CGI_10022775; scaffold544 WUBlastX DNA_TcMar-Tigge 738917 739033 35 + . . scaffold544 GLEAN mRNA 727518 748903 0.982522 - . ID=CGI_10022583; scaffold392 WUBlastX DNA_Kolobok 46393 46623 25 + . . scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; scaffold1532 WUBlastX LINE_RTE-X 974934 975317 78 - . . scaffold1532 GLEAN mRNA 970227 975953 0.953998 - . ID=CGI_10028277; scaffold168 WUBlastX DNA_TcMar-Tc1 1062346 1062504 33 + . . scaffold168 GLEAN mRNA 1061165 1068516 1 + . ID=CGI_10025626; scaffold168 WUBlastX DNA_TcMar-Tc1 1062346 1062504 33 + . . scaffold168 GLEAN mRNA 1061468 1075146 0.901342 - . ID=CGI_10025627; scaffold453 WUBlastX LINE_CR1-L2 314738 315115 70 - . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold308 WUBlastX DNA_hAT 103519 103716 100 - . . scaffold308 GLEAN mRNA 89849 109933 0.990769 - . ID=CGI_10011007; scaffold773 WUBlastX DNA_hAT 193778 194170 62 + . . scaffold773 GLEAN mRNA 191166 196246 0.998027 + . ID=CGI_10011345; scaffold198 WUBlastX DNA_Harbinger 130032 130214 41 - . . scaffold198 GLEAN mRNA 125037 150103 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_Harbinger 130032 130214 41 - . . scaffold198 GLEAN mRNA 129155 148314 0.927276 - . ID=CGI_10027796; scaffold854 WUBlastX LINE_L1-Tx1 415651 416214 24 - . . scaffold854 GLEAN mRNA 397662 453116 0.849104 + . ID=CGI_10022252; scaffold315 WUBlastX LTR_Pao 204386 204916 64 - . . scaffold315 GLEAN mRNA 198637 213809 0.999922 + . ID=CGI_10020410; scaffold192 WUBlastX LTR_Gypsy 664087 664215 45 + . . scaffold192 GLEAN mRNA 655198 676504 0.999922 - . ID=CGI_10023723; scaffold192 WUBlastX LTR_Gypsy 664217 664345 29 + . . scaffold192 GLEAN mRNA 655198 676504 0.999922 - . ID=CGI_10023723; scaffold226 WUBlastX LTR_Ngaro 467309 467410 39 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold247 WUBlastX LINE_RTE-BovB 203993 204367 57 - . . scaffold247 GLEAN mRNA 197989 208519 0.419557 + . ID=CGI_10018593; scaffold597 WUBlastX LINE_RTE-BovB 35106 35339 37 - . . scaffold597 GLEAN mRNA 30096 40610 0.999676 + . ID=CGI_10004927; scaffold1315 WUBlastX LINE_RTE-X 525705 526049 86 + . . scaffold1315 GLEAN mRNA 522066 545999 0.9886 + . ID=CGI_10021623; scaffold43552 WUBlastX DNA_Sola 207953 208138 38 - . . scaffold43552 GLEAN mRNA 203091 219517 0.574406 + . ID=CGI_10011022; scaffold43552 WUBlastX DNA_Sola 207953 208138 38 - . . scaffold43552 GLEAN mRNA 204428 227902 0.829194 - . ID=CGI_10011023; scaffold1663 WUBlastX LINE_CR1 109788 109877 27 + . . scaffold1663 GLEAN mRNA 68504 119090 0.88293 - . ID=CGI_10009864; scaffold1759 WUBlastX LTR_Gypsy 102041 102268 26 + . . scaffold1759 GLEAN mRNA 83905 106418 0.889634 + . ID=CGI_10010906; scaffold1084 WUBlastX LTR_DIRS 147404 148465 67 + . . scaffold1084 GLEAN mRNA 143113 160475 0.702333 + . ID=CGI_10010078; scaffold191 WUBlastX DNA_MuDR 552049 552270 97 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold39268 WUBlastX LINE_RTE-X 56706 57089 120 + . . scaffold39268 GLEAN mRNA 37983 58849 0.736622 - . ID=CGI_10003275; scaffold626 WUBlastX DNA_Harbinger 140640 140762 60 - . . scaffold626 GLEAN mRNA 111038 155634 0.745946 - . ID=CGI_10019981; scaffold626 WUBlastX DNA_Harbinger 141432 141572 92 - . . scaffold626 GLEAN mRNA 111038 155634 0.745946 - . ID=CGI_10019981; scaffold605 WUBlastX RC_Helitron 42729 42977 36 + . . scaffold605 GLEAN mRNA 41127 44213 1 + . ID=CGI_10004633; scaffold1024 WUBlastX DNA_IS4EU 1758683 1758961 162 + . . scaffold1024 GLEAN mRNA 1751618 1765575 0.556405 - . ID=CGI_10028585; scaffold138 WUBlastX LINE_L1-Tx1 76008 76190 33 - . . scaffold138 GLEAN mRNA 71718 76716 0.998636 - . ID=CGI_10008427; scaffold625 WUBlastX LINE_L2 601027 602493 881 - . . scaffold625 GLEAN mRNA 587493 614849 0.872449 - . ID=CGI_10023425; scaffold625 WUBlastX LINE_L2 601027 602493 881 - . . scaffold625 GLEAN mRNA 593175 626759 0.878872 + . ID=CGI_10023426; scaffold1377 WUBlastX DNA_Crypton 128161 128331 78 + . . scaffold1377 GLEAN mRNA 119143 150442 0.64366 + . ID=CGI_10008621; scaffold1692 WUBlastX LINE_L1-Tx1 52510 52650 36 - . . scaffold1692 GLEAN mRNA 40202 58829 0.152045 + . ID=CGI_10004025; scaffold1692 WUBlastX LINE_L1-Tx1 52677 53060 90 - . . scaffold1692 GLEAN mRNA 40202 58829 0.152045 + . ID=CGI_10004025; scaffold35438 WUBlastX LINE_L1-Tx1 11301 11948 244 - . . scaffold35438 GLEAN mRNA 3327 22372 0.999028 - . ID=CGI_10001514; scaffold35438 WUBlastX LINE_L1-Tx1 12025 12810 187 - . . scaffold35438 GLEAN mRNA 3327 22372 0.999028 - . ID=CGI_10001514; scaffold210 WUBlastX LTR_Ngaro 223521 223766 174 + . . scaffold210 GLEAN mRNA 223042 231005 0.552757 + . ID=CGI_10015889; C28348 WUBlastX LTR_Gypsy 3411 3479 23 + . . C28348 GLEAN mRNA 161 3806 1 - . ID=CGI_10000423; scaffold599 WUBlastX DNA_Kolobok 483697 484017 85 - . . scaffold599 GLEAN mRNA 483470 484330 1 + . ID=CGI_10021728; scaffold599 WUBlastX DNA_Kolobok 483697 484017 85 - . . scaffold599 GLEAN mRNA 478283 491770 0.99915 - . ID=CGI_10021727; scaffold509 WUBlastX LINE_L1-Tx1 256249 256830 221 + . . scaffold509 GLEAN mRNA 253981 269937 0.999344 + . ID=CGI_10018647; scaffold509 WUBlastX LINE_L1-Tx1 257204 257611 310 + . . scaffold509 GLEAN mRNA 253981 269937 0.999344 + . ID=CGI_10018647; scaffold509 WUBlastX LINE_L1-Tx1 257599 258042 241 + . . scaffold509 GLEAN mRNA 253981 269937 0.999344 + . ID=CGI_10018647; scaffold509 WUBlastX LINE_L1-Tx1 257975 258349 127 + . . scaffold509 GLEAN mRNA 253981 269937 0.999344 + . ID=CGI_10018647; scaffold509 WUBlastX LINE_L1-Tx1 258622 259512 46 + . . scaffold509 GLEAN mRNA 253981 269937 0.999344 + . ID=CGI_10018647; scaffold41034 WUBlastX DNA_Academ 56996 57256 72 + . . scaffold41034 GLEAN mRNA 40186 62880 0.65884 + . ID=CGI_10004651; scaffold40134 WUBlastX LINE_Penelope 39670 40131 160 + . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold257 WUBlastX LTR_Gypsy-Cigr 1098261 1098950 144 - . . scaffold257 GLEAN mRNA 1093944 1099430 0.999918 - . ID=CGI_10027941; scaffold33832 WUBlastX DNA_Harbinger 12785 13150 145 + . . scaffold33832 GLEAN mRNA 12785 13183 0.717777 + . ID=CGI_10001154; C34856 WUBlastX LINE_L1-Tx1 6317 7141 42 - . . C34856 GLEAN mRNA 131 10544 0.998639 + . ID=CGI_10001362; scaffold1409 WUBlastX LINE_RTE-BovB 137952 139016 1288 - . . scaffold1409 GLEAN mRNA 123560 153776 0.210676 - . ID=CGI_10013783; scaffold1518 WUBlastX LINE_L2 285648 285986 103 + . . scaffold1518 GLEAN mRNA 258241 287104 0.241996 + . ID=CGI_10017803; scaffold351 WUBlastX LINE_Penelope 101852 102289 103 - . . scaffold351 GLEAN mRNA 94305 104490 0.817501 - . ID=CGI_10022591; scaffold321 WUBlastX LINE_RTE-X 477411 477629 98 - . . scaffold321 GLEAN mRNA 474717 485753 0.439448 - . ID=CGI_10020812; scaffold925 WUBlastX LTR_DIRS 438433 438597 44 + . . scaffold925 GLEAN mRNA 430454 444048 0.986598 + . ID=CGI_10017428; scaffold721 WUBlastX LINE_L2 82904 83008 30 + . . scaffold721 GLEAN mRNA 68079 89248 0.992034 + . ID=CGI_10021995; scaffold43664 WUBlastX LINE_RTE-X 214197 214661 177 + . . scaffold43664 GLEAN mRNA 204407 215793 0.656307 - . ID=CGI_10011717; scaffold213 WUBlastX DNA_Maverick 171846 172214 189 - . . scaffold213 GLEAN mRNA 155081 183799 0.877289 - . ID=CGI_10007552; scaffold42046 WUBlastX DNA_Crypton 80825 81088 110 - . . scaffold42046 GLEAN mRNA 66824 100858 0.352028 - . ID=CGI_10006003; scaffold42046 WUBlastX DNA_Crypton 81096 81380 95 - . . scaffold42046 GLEAN mRNA 66824 100858 0.352028 - . ID=CGI_10006003; scaffold1896 WUBlastX LTR_Ngaro 483439 483717 111 + . . scaffold1896 GLEAN mRNA 482993 491454 0.999947 + . ID=CGI_10019652; scaffold1727 WUBlastX RC_Helitron 41698 42663 125 - . . scaffold1727 GLEAN mRNA 27437 43036 0.635377 + . ID=CGI_10002672; scaffold1213 WUBlastX LINE_L1-Tx1 437581 438201 188 - . . scaffold1213 GLEAN mRNA 436828 438219 0.982039 - . ID=CGI_10027451; scaffold152 WUBlastX LINE_L1-Tx1 336503 337123 185 - . . scaffold152 GLEAN mRNA 335750 337141 0.992563 - . ID=CGI_10014900; scaffold152 WUBlastX LINE_L1-Tx1 336503 337123 185 - . . scaffold152 GLEAN mRNA 326766 349856 0.295405 + . ID=CGI_10014899; scaffold188 WUBlastX DNA_Zator 12383 12556 32 + . . scaffold188 GLEAN mRNA 7770 17806 0.999204 + . ID=CGI_10009311; scaffold469 WUBlastX LTR_Pao 623045 623326 154 + . . scaffold469 GLEAN mRNA 620008 639653 0.99956 + . ID=CGI_10024690; scaffold41954 WUBlastX LINE_Rex-Babar 131187 133022 35 - . . scaffold41954 GLEAN mRNA 128673 136852 1 + . ID=CGI_10005855; scaffold535 WUBlastX DNA_IS4EU 4134 5012 204 - . . scaffold535 GLEAN mRNA 109 7288 0.491277 + . ID=CGI_10020280; scaffold61 WUBlastX LINE_RTE-X 92046 92267 151 + . . scaffold61 GLEAN mRNA 83781 97404 0.999676 - . ID=CGI_10016342; scaffold1692 WUBlastX LINE_L1-Tx1 52955 53461 58 - . . scaffold1692 GLEAN mRNA 40202 58829 0.152045 + . ID=CGI_10004025; scaffold1851 WUBlastX LTR_Gypsy 104012 104611 188 + . . scaffold1851 GLEAN mRNA 98297 105350 0.387171 - . ID=CGI_10005104; scaffold1014 WUBlastX DNA_NOF 64596 65213 217 + . . scaffold1014 GLEAN mRNA 64220 75452 0.980298 + . ID=CGI_10020260; scaffold585 WUBlastX LINE_RTE-BovB 106932 107093 106 + . . scaffold585 GLEAN mRNA 91313 107443 0.999351 - . ID=CGI_10005541; scaffold535 WUBlastX LTR_Gypsy 556650 556775 32 + . . scaffold535 GLEAN mRNA 556071 562996 0.477113 + . ID=CGI_10020299; scaffold880 WUBlastX DNA_Kolobok 674236 674484 141 - . . scaffold880 GLEAN mRNA 673595 686654 0.926854 - . ID=CGI_10022204; scaffold198 WUBlastX LTR_Gypsy-Cigr 550415 553201 2093 + . . scaffold198 GLEAN mRNA 532542 554203 0.338011 + . ID=CGI_10027815; scaffold1097 WUBlastX LTR_Gypsy 860522 860620 22 + . . scaffold1097 GLEAN mRNA 848149 863853 0.999116 + . ID=CGI_10024555; scaffold705 WUBlastX DNA_IS4EU 401709 402068 95 + . . scaffold705 GLEAN mRNA 397843 425733 0.998279 - . ID=CGI_10015520; scaffold1788 WUBlastX DNA_Maverick 57132 57293 115 - . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold400 WUBlastX DNA_Sola 288573 289418 266 + . . scaffold400 GLEAN mRNA 275762 290092 0.47452 - . ID=CGI_10011441; scaffold689 WUBlastX LINE_RTE-X 118031 118038 66 - . . scaffold689 GLEAN mRNA 118031 118420 1 - . ID=CGI_10014824; scaffold689 WUBlastX LINE_RTE-X 118058 118420 149 - . . scaffold689 GLEAN mRNA 118031 118420 1 - . ID=CGI_10014824; scaffold1018 WUBlastX LTR_Gypsy 551500 552525 250 - . . scaffold1018 GLEAN mRNA 547902 567181 0.39343 + . ID=CGI_10019779; scaffold39134 WUBlastX LTR_Gypsy 48763 48900 25 + . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold1097 WUBlastX LTR_Ngaro 576231 576530 79 + . . scaffold1097 GLEAN mRNA 566282 590466 0.579339 - . ID=CGI_10024535; scaffold1097 WUBlastX LTR_Ngaro 576359 577828 144 + . . scaffold1097 GLEAN mRNA 566282 590466 0.579339 - . ID=CGI_10024535; scaffold630 WUBlastX LTR_Gypsy 342931 343140 135 - . . scaffold630 GLEAN mRNA 340806 353631 0.861539 - . ID=CGI_10018332; scaffold6 WUBlastX LINE_L1-Tx1 198936 199016 32 + . . scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; scaffold801 WUBlastX LINE_RTE-X 274170 274622 262 - . . scaffold801 GLEAN mRNA 264907 277016 0.581073 - . ID=CGI_10024082; scaffold610 WUBlastX DNA_IS4EU 104503 105033 310 + . . scaffold610 GLEAN mRNA 101538 106463 0.827114 + . ID=CGI_10021088; scaffold35994 WUBlastX DNA_PiggyBac 12413 12562 42 - . . scaffold35994 GLEAN mRNA 1476 13595 0.650997 + . ID=CGI_10001674; scaffold35994 WUBlastX DNA_PiggyBac 12559 12915 248 - . . scaffold35994 GLEAN mRNA 1476 13595 0.650997 + . ID=CGI_10001674; scaffold1397 WUBlastX LTR_Ngaro 24351 24869 183 + . . scaffold1397 GLEAN mRNA 22041 34038 0.684002 - . ID=CGI_10017113; scaffold42128 WUBlastX DNA_TcMar-Tc1 12170 12727 278 + . . scaffold42128 GLEAN mRNA 1970 15266 0.99078 + . ID=CGI_10006194; scaffold1485 WUBlastX LINE_RTE-X 48165 48551 133 - . . scaffold1485 GLEAN mRNA 39332 48639 0.999437 - . ID=CGI_10003293; scaffold550 WUBlastX LTR_Gypsy 193655 194092 148 - . . scaffold550 GLEAN mRNA 192301 204322 0.634785 + . ID=CGI_10012493; scaffold43844 WUBlastX DNA_TcMar-Marin 186675 187070 189 + . . scaffold43844 GLEAN mRNA 182095 193587 0.917611 + . ID=CGI_10013151; scaffold42530 WUBlastX LINE_L2 47785 47979 86 + . . scaffold42530 GLEAN mRNA 44450 55395 0.966018 + . ID=CGI_10007161; scaffold43302 WUBlastX DNA_PiggyBac 59408 59938 177 + . . scaffold43302 GLEAN mRNA 44692 96293 0.992844 + . ID=CGI_10009758; scaffold43302 WUBlastX DNA_PiggyBac 59938 60333 211 + . . scaffold43302 GLEAN mRNA 44692 96293 0.992844 + . ID=CGI_10009758; scaffold1490 WUBlastX DNA_NOF 201456 201608 40 + . . scaffold1490 GLEAN mRNA 170500 224827 0.659104 + . ID=CGI_10014912; scaffold1490 WUBlastX DNA_NOF 201743 201994 37 + . . scaffold1490 GLEAN mRNA 170500 224827 0.659104 + . ID=CGI_10014912; scaffold1490 WUBlastX DNA_NOF 202186 202485 213 + . . scaffold1490 GLEAN mRNA 170500 224827 0.659104 + . ID=CGI_10014912; scaffold1490 WUBlastX DNA_NOF 202713 202949 117 + . . scaffold1490 GLEAN mRNA 170500 224827 0.659104 + . ID=CGI_10014912; scaffold406 WUBlastX LINE_L1-Tx1 70153 70905 486 + . . scaffold406 GLEAN mRNA 63105 78647 0.760341 - . ID=CGI_10023839; scaffold1179 WUBlastX LINE_CR1-L2 44236 44325 24 - . . scaffold1179 GLEAN mRNA 39144 50414 0.726285 + . ID=CGI_10027340; scaffold294 WUBlastX LINE_L2 135695 136594 486 - . . scaffold294 GLEAN mRNA 124940 137273 0.889486 - . ID=CGI_10010334; scaffold1174 WUBlastX LINE_L1-Tx1 171048 171233 31 + . . scaffold1174 GLEAN mRNA 165948 193006 0.453368 - . ID=CGI_10026029; scaffold43008 WUBlastX LINE_L1-Tx1 84721 85107 67 - . . scaffold43008 GLEAN mRNA 78684 87806 0.543465 - . ID=CGI_10008462; scaffold43008 WUBlastX LINE_L1-Tx1 85380 86333 193 - . . scaffold43008 GLEAN mRNA 78684 87806 0.543465 - . ID=CGI_10008462; scaffold1603 WUBlastX LTR_Pao 331560 331601 27 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold1067 WUBlastX DNA_Sola 103426 103674 104 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold1067 WUBlastX DNA_Sola 103815 104132 217 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold143 WUBlastX LINE_L1-Tx1 211984 212277 174 - . . scaffold143 GLEAN mRNA 211939 221171 0.564856 - . ID=CGI_10010016; scaffold143 WUBlastX LINE_L1-Tx1 212310 212912 412 - . . scaffold143 GLEAN mRNA 211939 221171 0.564856 - . ID=CGI_10010016; scaffold99 WUBlastX LINE_L2 32487 33020 359 - . . scaffold99 GLEAN mRNA 22545 38354 0.404855 + . ID=CGI_10021189; scaffold1221 WUBlastX LTR_Gypsy 67901 68245 260 - . . scaffold1221 GLEAN mRNA 56411 69596 0.696179 + . ID=CGI_10019728; scaffold271 WUBlastX LINE_L2 201616 202695 686 + . . scaffold271 GLEAN mRNA 188870 219899 0.29689 - . ID=CGI_10024460; scaffold448 WUBlastX DNA_Harbinger 157872 157979 43 - . . scaffold448 GLEAN mRNA 153677 169530 0.957711 + . ID=CGI_10024934; scaffold448 WUBlastX DNA_Harbinger 157984 158913 708 - . . scaffold448 GLEAN mRNA 153677 169530 0.957711 + . ID=CGI_10024934; scaffold33082 WUBlastX LINE_RTE-X 6605 7423 493 - . . scaffold33082 GLEAN mRNA 1046 12947 0.584166 + . ID=CGI_10000988; scaffold38510 WUBlastX DNA_Sola 27743 27997 86 + . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold38510 WUBlastX DNA_Sola 28684 28986 131 + . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold38510 WUBlastX DNA_Sola 30674 30877 136 + . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold683 WUBlastX LINE_RTE-X 84393 85721 542 - . . scaffold683 GLEAN mRNA 80657 98109 0.999674 + . ID=CGI_10010356; scaffold847 WUBlastX RC_Helitron 437219 437503 109 - . . scaffold847 GLEAN mRNA 435807 447835 0.572478 + . ID=CGI_10022278; scaffold847 WUBlastX RC_Helitron 437499 437846 210 - . . scaffold847 GLEAN mRNA 435807 447835 0.572478 + . ID=CGI_10022278; scaffold847 WUBlastX RC_Helitron 437852 438349 316 - . . scaffold847 GLEAN mRNA 435807 447835 0.572478 + . ID=CGI_10022278; scaffold847 WUBlastX RC_Helitron 438355 438774 50 - . . scaffold847 GLEAN mRNA 435807 447835 0.572478 + . ID=CGI_10022278; scaffold847 WUBlastX RC_Helitron 438743 439114 118 - . . scaffold847 GLEAN mRNA 435807 447835 0.572478 + . ID=CGI_10022278; scaffold1281 WUBlastX LTR_DIRS 8053 8259 108 + . . scaffold1281 GLEAN mRNA 6818 22494 0.72874 + . ID=CGI_10001420; scaffold1281 WUBlastX LTR_DIRS 10090 10386 194 + . . scaffold1281 GLEAN mRNA 6818 22494 0.72874 + . ID=CGI_10001420; scaffold1589 WUBlastX LTR_Gypsy 593825 595015 961 + . . scaffold1589 GLEAN mRNA 592118 603104 0.965132 - . ID=CGI_10024122; scaffold1625 WUBlastX LTR_Copia 154798 155040 43 - . . scaffold1625 GLEAN mRNA 154393 155445 0.999064 - . ID=CGI_10007531; scaffold43538 WUBlastX LINE_CR1 155064 155363 51 + . . scaffold43538 GLEAN mRNA 151937 158307 1 - . ID=CGI_10010823; scaffold606 WUBlastX LINE_CR1 43859 43960 79 - . . scaffold606 GLEAN mRNA 43859 44197 0.901376 - . ID=CGI_10012938; scaffold42030 WUBlastX LINE_CR1 77178 77630 79 + . . scaffold42030 GLEAN mRNA 73599 103190 0.98897 + . ID=CGI_10006046; scaffold1656 WUBlastX LTR_DIRS 62997 63104 41 + . . scaffold1656 GLEAN mRNA 45907 73911 0.308617 - . ID=CGI_10006142; scaffold880 WUBlastX LTR_Gypsy 533760 533957 36 - . . scaffold880 GLEAN mRNA 532350 563503 0.438976 - . ID=CGI_10022201; scaffold880 WUBlastX LTR_Gypsy 534070 534117 31 - . . scaffold880 GLEAN mRNA 532350 563503 0.438976 - . ID=CGI_10022201; scaffold880 WUBlastX LTR_Gypsy 534128 534214 31 - . . scaffold880 GLEAN mRNA 532350 563503 0.438976 - . ID=CGI_10022201; scaffold243 WUBlastX LTR_Gypsy 119766 119916 48 - . . scaffold243 GLEAN mRNA 119766 120167 0.777732 - . ID=CGI_10006818; scaffold243 WUBlastX LTR_Gypsy 119476 119916 48 - . . scaffold243 GLEAN mRNA 107331 122281 0.913043 + . ID=CGI_10006817; scaffold41206 WUBlastX DNA_hAT-Blackja 92089 92313 50 - . . scaffold41206 GLEAN mRNA 89947 111236 0.995535 - . ID=CGI_10004793; scaffold852 WUBlastX DNA_IS4EU 52202 52348 23 - . . scaffold852 GLEAN mRNA 46446 54395 0.990384 - . ID=CGI_10012034; scaffold43358 WUBlastX DNA_IS4EU 219021 219146 36 - . . scaffold43358 GLEAN mRNA 218442 219604 0.593251 - . ID=CGI_10009980; scaffold41766 WUBlastX LTR_Gypsy 31418 31501 21 - . . scaffold41766 GLEAN mRNA 24624 37050 0.752559 - . ID=CGI_10005601; scaffold1024 WUBlastX DNA_Kolobok 292995 293183 37 - . . scaffold1024 GLEAN mRNA 286016 307543 0.666664 - . ID=CGI_10028532; scaffold1067 WUBlastX LINE_L1 108025 108489 73 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold168 WUBlastX DNA_MuDR 179668 179853 24 - . . scaffold168 GLEAN mRNA 178276 183101 0.805771 - . ID=CGI_10025586; scaffold471 WUBlastX DNA_MuDR 1229420 1229791 73 - . . scaffold471 GLEAN mRNA 1226022 1238861 0.423333 - . ID=CGI_10027038; scaffold772 WUBlastX LINE_Penelope 53786 53998 27 - . . scaffold772 GLEAN mRNA 32739 66911 0.999897 - . ID=CGI_10016575; scaffold1600 WUBlastX LINE_RTE-BovB 196007 196168 52 + . . scaffold1600 GLEAN mRNA 182749 197532 0.996574 - . ID=CGI_10013039; scaffold1855 WUBlastX LINE_RTE-X 201339 201620 47 + . . scaffold1855 GLEAN mRNA 188156 207855 0.999324 - . ID=CGI_10008876; scaffold143 WUBlastX LINE_RTE-X 147254 147361 41 - . . scaffold143 GLEAN mRNA 117664 149411 0.999949 + . ID=CGI_10010012; scaffold1813 WUBlastX LINE_RTE-X 113251 113511 28 - . . scaffold1813 GLEAN mRNA 106186 113865 0.957305 + . ID=CGI_10005994; scaffold43920 WUBlastX LINE_RTE-X 357992 358171 84 - . . scaffold43920 GLEAN mRNA 342007 379534 0.562069 - . ID=CGI_10014001; scaffold226 WUBlastX LINE_RTE-BovB 1052360 1052854 43 - . . scaffold226 GLEAN mRNA 1050620 1061522 0.99513 - . ID=CGI_10025399; scaffold58 WUBlastX DNA_TcMar-Marin 564723 564866 76 - . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; scaffold1554 WUBlastX LINE_L2 486084 486188 63 + . . scaffold1554 GLEAN mRNA 475769 486188 0.34149 + . ID=CGI_10017375; scaffold1866 WUBlastX LINE_L2 204721 204900 73 + . . scaffold1866 GLEAN mRNA 197037 209666 0.769721 - . ID=CGI_10017910; scaffold1866 WUBlastX LINE_L2 222862 223041 80 + . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold1866 WUBlastX LINE_I 224279 224623 59 + . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold738 WUBlastX DNA_hAT-Tip100 1818 2153 63 + . . scaffold738 GLEAN mRNA 1336 4448 1 + . ID=CGI_10000540; C32276 WUBlastX LTR_ERV1 9446 9607 31 - . . C32276 GLEAN mRNA 2612 10129 0.932261 - . ID=CGI_10000874; scaffold1272 WUBlastX LTR_Ngaro 181120 181392 81 - . . scaffold1272 GLEAN mRNA 155957 203314 0.324986 - . ID=CGI_10008310; scaffold451 WUBlastX LTR_Gypsy 66845 67234 89 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold1316 WUBlastX LTR_Gypsy 260011 260538 59 + . . scaffold1316 GLEAN mRNA 259603 261597 0.995793 + . ID=CGI_10016306; scaffold203 WUBlastX LINE_RTE-X 453340 453591 52 - . . scaffold203 GLEAN mRNA 431495 460852 0.461924 + . ID=CGI_10021073; scaffold591 WUBlastX DNA_PiggyBac 726768 726860 35 + . . scaffold591 GLEAN mRNA 721166 806574 0.987378 - . ID=CGI_10027581; scaffold433 WUBlastX LINE_RTE-X 466182 466574 29 + . . scaffold433 GLEAN mRNA 456112 473771 0.317728 + . ID=CGI_10027074; scaffold43726 WUBlastX LINE_RTE-X 193127 193339 38 + . . scaffold43726 GLEAN mRNA 189584 195489 0.999572 - . ID=CGI_10012025; scaffold38306 WUBlastX LINE_L1 6312 6377 25 + . . scaffold38306 GLEAN mRNA 6272 12349 0.99842 - . ID=CGI_10002711; scaffold38306 WUBlastX LINE_L1 7154 7537 62 + . . scaffold38306 GLEAN mRNA 6272 12349 0.99842 - . ID=CGI_10002711; scaffold39858 WUBlastX LTR_Pao 72154 72552 94 - . . scaffold39858 GLEAN mRNA 65424 78749 0.99005 + . ID=CGI_10003660; scaffold117 WUBlastX LINE_L2 28262 28414 20 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold117 WUBlastX LINE_L2 28396 28626 23 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold1189 WUBlastX LINE_CR1-L2 847815 848105 78 - . . scaffold1189 GLEAN mRNA 845721 854724 0.805708 + . ID=CGI_10023837; scaffold950 WUBlastX LINE_L2 235428 235499 22 - . . scaffold950 GLEAN mRNA 224684 252187 0.638871 - . ID=CGI_10022925; scaffold204 WUBlastX LTR_Ngaro 300005 300184 86 + . . scaffold204 GLEAN mRNA 270844 308042 0.270192 - . ID=CGI_10026102; scaffold453 WUBlastX LTR_Gypsy 142800 142886 41 + . . scaffold453 GLEAN mRNA 138101 157244 0.160604 + . ID=CGI_10015041; scaffold64 WUBlastX DNA_Harbinger 119817 120026 72 + . . scaffold64 GLEAN mRNA 118246 132595 0.997548 - . ID=CGI_10005753; scaffold347 WUBlastX LINE_L1-Tx1 261167 261802 47 - . . scaffold347 GLEAN mRNA 231355 265361 0.350161 - . ID=CGI_10021787; scaffold419 WUBlastX DNA_hAT-Tip100 894899 895183 86 + . . scaffold419 GLEAN mRNA 894890 897714 0.983071 + . ID=CGI_10028373; scaffold86 WUBlastX LINE_RTE-BovB 1260053 1260484 70 - . . scaffold86 GLEAN mRNA 1231261 1279248 0.605603 + . ID=CGI_10028197; scaffold42674 WUBlastX LINE_RTE-X 173170 173325 41 - . . scaffold42674 GLEAN mRNA 169493 180850 0.544647 + . ID=CGI_10007448; scaffold577 WUBlastX LTR_DIRS 114977 115249 80 + . . scaffold577 GLEAN mRNA 114977 115387 0.999451 + . ID=CGI_10009917; C26860 WUBlastX DNA_TcMar-Tc1 180 285 27 + . . C26860 GLEAN mRNA 25 285 0.999372 + . ID=CGI_10000331; scaffold35712 WUBlastX LINE_Jockey 7765 7827 22 + . . scaffold35712 GLEAN mRNA 3858 24173 0.47659 + . ID=CGI_10001589; scaffold1213 WUBlastX DNA_hAT-Tip100 359234 359497 113 + . . scaffold1213 GLEAN mRNA 350181 406483 0.805895 + . ID=CGI_10027449; scaffold535 WUBlastX LTR_Gypsy 559381 559530 50 + . . scaffold535 GLEAN mRNA 556071 562996 0.477113 + . ID=CGI_10020299; scaffold1600 WUBlastX LTR_DIRS 185382 185555 21 + . . scaffold1600 GLEAN mRNA 179369 186583 0.98626 + . ID=CGI_10013038; scaffold1600 WUBlastX LTR_DIRS 185382 185555 21 + . . scaffold1600 GLEAN mRNA 182749 197532 0.996574 - . ID=CGI_10013039; scaffold1256 WUBlastX LTR_Ngaro 90546 90797 68 + . . scaffold1256 GLEAN mRNA 90444 103764 0.997922 + . ID=CGI_10005430; scaffold1256 WUBlastX LTR_Ngaro 91579 91641 26 + . . scaffold1256 GLEAN mRNA 90444 103764 0.997922 + . ID=CGI_10005430; scaffold984 WUBlastX LINE_L1-Tx1 3335 3736 64 + . . scaffold984 GLEAN mRNA 2190 6762 0.999998 + . ID=CGI_10000576; scaffold676 WUBlastX LINE_RTE-X 576644 576913 28 - . . scaffold676 GLEAN mRNA 560023 599101 0.378138 + . ID=CGI_10021432; scaffold1213 WUBlastX DNA_TcMar-Tc1 250932 251288 74 - . . scaffold1213 GLEAN mRNA 226891 261241 0.989794 + . ID=CGI_10027441; scaffold393 WUBlastX LINE_L1-Tx1 1041941 1042048 48 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold38780 WUBlastX DNA_PiggyBac 6745 7221 63 - . . scaffold38780 GLEAN mRNA 2671 16848 0.959487 - . ID=CGI_10002959; scaffold43072 WUBlastX LINE_RTE-X 112752 113069 82 - . . scaffold43072 GLEAN mRNA 112346 129150 0.396359 - . ID=CGI_10008700; scaffold43522 WUBlastX LINE_L1 101393 102205 45 - . . scaffold43522 GLEAN mRNA 83396 104526 0.999468 + . ID=CGI_10010551; scaffold1349 WUBlastX LINE_L2 101255 101725 74 + . . scaffold1349 GLEAN mRNA 98417 106130 0.988431 - . ID=CGI_10009938; scaffold42840 WUBlastX LINE_CR1 187971 188168 24 + . . scaffold42840 GLEAN mRNA 176465 192129 0.833079 - . ID=CGI_10007840; scaffold152 WUBlastX LTR_Ngaro 342560 342952 88 + . . scaffold152 GLEAN mRNA 326766 349856 0.295405 + . ID=CGI_10014899; scaffold833 WUBlastX LINE_Penelope 379595 379774 101 - . . scaffold833 GLEAN mRNA 336322 390734 0.191045 + . ID=CGI_10016744; scaffold42 WUBlastX LINE_Penelope 540351 540467 31 + . . scaffold42 GLEAN mRNA 523128 541395 0.964037 - . ID=CGI_10018925; scaffold42 WUBlastX LINE_Penelope 540530 540874 20 + . . scaffold42 GLEAN mRNA 523128 541395 0.964037 - . ID=CGI_10018925; scaffold230 WUBlastX LTR_Gypsy 218641 219426 106 - . . scaffold230 GLEAN mRNA 178498 220276 0.270873 - . ID=CGI_10011252; scaffold660 WUBlastX LINE_RTE-X 106971 107150 24 + . . scaffold660 GLEAN mRNA 98549 108257 0.999675 - . ID=CGI_10013750; scaffold655 WUBlastX LINE_CR1 207939 209108 28 + . . scaffold655 GLEAN mRNA 206640 213790 0.998219 + . ID=CGI_10014952; scaffold917 WUBlastX DNA_IS4EU 148880 149065 98 + . . scaffold917 GLEAN mRNA 121193 151265 0.227919 + . ID=CGI_10011083; scaffold789 WUBlastX LTR_Gypsy 322330 322752 46 + . . scaffold789 GLEAN mRNA 321917 326732 0.597754 + . ID=CGI_10017201; scaffold38458 WUBlastX DNA_Harbinger 52840 53298 107 + . . scaffold38458 GLEAN mRNA 38002 56000 0.84332 + . ID=CGI_10002784; scaffold288 WUBlastX DNA_Harbinger 207813 208184 107 - . . scaffold288 GLEAN mRNA 165543 215886 0.392804 - . ID=CGI_10020660; scaffold109 WUBlastX LINE_RTE-X 330377 330766 96 - . . scaffold109 GLEAN mRNA 303639 363474 0.446526 - . ID=CGI_10022113; scaffold609 WUBlastX LINE_RTE-X 186214 186438 130 - . . scaffold609 GLEAN mRNA 183215 213482 0.840088 + . ID=CGI_10010464; scaffold47 WUBlastX DNA_TcMar-Tc2 25956 26684 158 - . . scaffold47 GLEAN mRNA 20135 33676 0.999415 - . ID=CGI_10002504; scaffold145 WUBlastX DNA_TcMar-Fot1 649661 649957 72 + . . scaffold145 GLEAN mRNA 640130 678599 0.569648 - . ID=CGI_10026560; scaffold41560 WUBlastX LINE_CR1-L2 86027 86482 81 - . . scaffold41560 GLEAN mRNA 83554 88131 1 - . ID=CGI_10005282; scaffold298 WUBlastX LTR_Ngaro 299175 299453 123 + . . scaffold298 GLEAN mRNA 297759 312412 0.999402 - . ID=CGI_10018824; scaffold42568 WUBlastX DNA_IS4EU 35044 35496 142 + . . scaffold42568 GLEAN mRNA 21645 48345 0.50892 + . ID=CGI_10007265; scaffold271 WUBlastX LINE_L1 470981 471250 29 - . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold257 WUBlastX LINE_RTE-X 318027 318239 34 + . . scaffold257 GLEAN mRNA 306483 324339 0.999073 + . ID=CGI_10027906; scaffold880 WUBlastX LTR_Ngaro 547038 547493 70 - . . scaffold880 GLEAN mRNA 532350 563503 0.438976 - . ID=CGI_10022201; scaffold36410 WUBlastX DNA_Harbinger 5617 5808 26 + . . scaffold36410 GLEAN mRNA 4689 21980 0.354487 - . ID=CGI_10001887; scaffold36 WUBlastX LTR_Gypsy 2870 3133 42 + . . scaffold36 GLEAN mRNA 2519 8438 0.614104 + . ID=CGI_10001028; scaffold31388 WUBlastX DNA_Zator 4844 5029 33 - . . scaffold31388 GLEAN mRNA 4345 8298 0.644139 - . ID=CGI_10000740; scaffold1525 WUBlastX DNA_En-Spm 282937 283011 27 - . . scaffold1525 GLEAN mRNA 276942 293191 0.993853 - . ID=CGI_10013865; scaffold1835 WUBlastX DNA_hAT-Blackja 379070 379402 90 - . . scaffold1835 GLEAN mRNA 376025 381999 0.999671 - . ID=CGI_10015194; scaffold1835 WUBlastX DNA_hAT-Blackja 379363 379521 41 - . . scaffold1835 GLEAN mRNA 376025 381999 0.999671 - . ID=CGI_10015194; scaffold40104 WUBlastX DNA_IS4EU 36123 36509 172 + . . scaffold40104 GLEAN mRNA 23202 39290 0.364513 - . ID=CGI_10003867; scaffold241 WUBlastX DNA_NOF 392152 392511 119 - . . scaffold241 GLEAN mRNA 380326 398675 0.495388 - . ID=CGI_10025102; scaffold1301 WUBlastX LTR_Ngaro 317475 319052 1078 + . . scaffold1301 GLEAN mRNA 311038 320027 0.984699 - . ID=CGI_10027714; scaffold733 WUBlastX LTR_Gypsy 39077 40333 1145 + . . scaffold733 GLEAN mRNA 37672 49158 0.939016 - . ID=CGI_10025863; scaffold1771 WUBlastX LTR_Gypsy 94102 94188 22 - . . scaffold1771 GLEAN mRNA 88638 95441 0.521534 - . ID=CGI_10004387; scaffold631 WUBlastX LINE_RTE-X 314264 316999 813 - . . scaffold631 GLEAN mRNA 311038 316999 0.99846 - . ID=CGI_10014187; scaffold1532 WUBlastX LTR_Gypsy 988770 988898 26 + . . scaffold1532 GLEAN mRNA 980578 997386 0.999875 - . ID=CGI_10028278; scaffold1866 WUBlastX LINE_L2 222850 223080 63 + . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold867 WUBlastX DNA_Harbinger 284779 285117 95 + . . scaffold867 GLEAN mRNA 272568 288334 0.996494 + . ID=CGI_10026216; scaffold1024 WUBlastX DNA_TcMar-Tc1 223040 223327 97 - . . scaffold1024 GLEAN mRNA 191784 246938 0.99909 + . ID=CGI_10028528; scaffold39096 WUBlastX LTR_Gypsy-Cigr 24618 26141 1326 + . . scaffold39096 GLEAN mRNA 2759 26289 0.999949 + . ID=CGI_10003146; scaffold43396 WUBlastX LTR_Ngaro 235006 235404 60 - . . scaffold43396 GLEAN mRNA 229822 241717 0.993815 + . ID=CGI_10010156; scaffold42402 WUBlastX LINE_RTE-X 131009 131158 86 + . . scaffold42402 GLEAN mRNA 124224 132825 0.999027 - . ID=CGI_10006795; scaffold42402 WUBlastX LINE_RTE-X 131009 131158 86 + . . scaffold42402 GLEAN mRNA 127799 151962 1 + . ID=CGI_10006796; scaffold42402 WUBlastX LINE_RTE-X 131188 131244 28 + . . scaffold42402 GLEAN mRNA 124224 132825 0.999027 - . ID=CGI_10006795; scaffold42402 WUBlastX LINE_RTE-X 131188 131244 28 + . . scaffold42402 GLEAN mRNA 127799 151962 1 + . ID=CGI_10006796; scaffold1749 WUBlastX DNA_Maverick 106322 106669 208 - . . scaffold1749 GLEAN mRNA 104860 117950 0.57225 + . ID=CGI_10008256; scaffold1316 WUBlastX LINE_L1-Tx1 369654 370151 91 - . . scaffold1316 GLEAN mRNA 367063 406080 0.346646 - . ID=CGI_10016312; scaffold1024 WUBlastX LINE_CR1-L2 20187 21998 963 - . . scaffold1024 GLEAN mRNA 216 21998 0.996423 - . ID=CGI_10028517; scaffold1350 WUBlastX LTR_DIRS 468048 468842 114 + . . scaffold1350 GLEAN mRNA 448816 473345 0.450856 - . ID=CGI_10017319; scaffold1459 WUBlastX LINE_L1 16042 16113 25 + . . scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; scaffold891 WUBlastX DNA_En-Spm 191888 192022 23 + . . scaffold891 GLEAN mRNA 189251 197847 0.702385 + . ID=CGI_10009074; scaffold321 WUBlastX LINE_RTE-X 477360 477623 44 - . . scaffold321 GLEAN mRNA 474717 485753 0.439448 - . ID=CGI_10020812; scaffold321 WUBlastX LINE_RTE-X 477637 477765 79 - . . scaffold321 GLEAN mRNA 474717 485753 0.439448 - . ID=CGI_10020812; scaffold962 WUBlastX LINE_CR1-L2 747581 748102 51 + . . scaffold962 GLEAN mRNA 737761 749184 0.279681 - . ID=CGI_10027664; scaffold1532 WUBlastX LINE_L1-Tx1 412293 412685 211 - . . scaffold1532 GLEAN mRNA 405806 428910 0.729212 + . ID=CGI_10028250; scaffold469 WUBlastX LTR_Pao 622545 622973 352 + . . scaffold469 GLEAN mRNA 620008 639653 0.99956 + . ID=CGI_10024690; scaffold1316 WUBlastX LINE_L1-Tx1 370211 370771 57 - . . scaffold1316 GLEAN mRNA 367063 406080 0.346646 - . ID=CGI_10016312; scaffold22 WUBlastX LINE_RTE-X 882347 883090 183 - . . scaffold22 GLEAN mRNA 852632 884943 0.996367 + . ID=CGI_10028880; scaffold481 WUBlastX LINE_L2 1216305 1216877 209 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold773 WUBlastX DNA_hAT 193347 193778 99 + . . scaffold773 GLEAN mRNA 191166 196246 0.998027 + . ID=CGI_10011345; scaffold773 WUBlastX DNA_hAT 193874 194173 109 + . . scaffold773 GLEAN mRNA 191166 196246 0.998027 + . ID=CGI_10011345; scaffold280 WUBlastX LINE_L2 588936 589466 229 - . . scaffold280 GLEAN mRNA 579437 592170 0.977964 - . ID=CGI_10024596; scaffold1826 WUBlastX LTR_Gypsy 40152 40280 29 + . . scaffold1826 GLEAN mRNA 39665 57424 0.756838 + . ID=CGI_10006241; scaffold1521 WUBlastX DNA_TcMar-Tc1 217491 217688 90 + . . scaffold1521 GLEAN mRNA 212318 231130 0.482046 + . ID=CGI_10017939; scaffold41700 WUBlastX LTR_DIRS 63200 63949 279 + . . scaffold41700 GLEAN mRNA 62822 64018 0.99493 + . ID=CGI_10005503; scaffold326 WUBlastX LTR_Gypsy 66602 66615 35 + . . scaffold326 GLEAN mRNA 66602 67012 0.649408 + . ID=CGI_10003297; scaffold1097 WUBlastX LTR_Gypsy 860531 860614 23 + . . scaffold1097 GLEAN mRNA 848149 863853 0.999116 + . ID=CGI_10024555; scaffold1179 WUBlastX LTR_Gypsy 21997 22620 162 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold733 WUBlastX DNA_Kolobok 375289 375513 117 + . . scaffold733 GLEAN mRNA 372581 407469 0.843432 + . ID=CGI_10025875; scaffold733 WUBlastX DNA_Kolobok 376261 376509 78 + . . scaffold733 GLEAN mRNA 372581 407469 0.843432 + . ID=CGI_10025875; scaffold733 WUBlastX DNA_Kolobok 376842 377078 40 + . . scaffold733 GLEAN mRNA 372581 407469 0.843432 + . ID=CGI_10025875; scaffold408 WUBlastX LINE_RTE-X 427627 428235 222 - . . scaffold408 GLEAN mRNA 422121 432580 0.840296 - . ID=CGI_10023238; scaffold408 WUBlastX LINE_RTE-X 428244 428354 74 - . . scaffold408 GLEAN mRNA 422121 432580 0.840296 - . ID=CGI_10023238; scaffold3 WUBlastX LINE_L2 110440 110940 347 + . . scaffold3 GLEAN mRNA 82419 111292 0.739728 - . ID=CGI_10027273; scaffold39196 WUBlastX RC_Helitron 37921 38223 189 - . . scaffold39196 GLEAN mRNA 18014 59804 0.5589 - . ID=CGI_10003215; scaffold39196 WUBlastX RC_Helitron 38223 38399 91 - . . scaffold39196 GLEAN mRNA 18014 59804 0.5589 - . ID=CGI_10003215; scaffold39196 WUBlastX RC_Helitron 38396 38824 45 - . . scaffold39196 GLEAN mRNA 18014 59804 0.5589 - . ID=CGI_10003215; scaffold43008 WUBlastX LINE_L1-Tx1 86135 86671 77 - . . scaffold43008 GLEAN mRNA 78684 87806 0.543465 - . ID=CGI_10008462; scaffold1032 WUBlastX DNA_TcMar-Marin 552157 552513 168 - . . scaffold1032 GLEAN mRNA 545471 568883 0.969277 - . ID=CGI_10021693; scaffold610 WUBlastX LTR_Gypsy 569410 569544 22 + . . scaffold610 GLEAN mRNA 561259 570035 0.686247 - . ID=CGI_10021130; scaffold1024 WUBlastX LTR_Gypsy 990852 991427 201 + . . scaffold1024 GLEAN mRNA 986108 994171 0.999235 - . ID=CGI_10028555; scaffold463 WUBlastX LINE_L2 43225 43698 422 - . . scaffold463 GLEAN mRNA 29508 44578 1 - . ID=CGI_10004288; scaffold396 WUBlastX LTR_Ngaro 140501 141364 364 - . . scaffold396 GLEAN mRNA 135948 145670 0.499792 + . ID=CGI_10018099; scaffold772 WUBlastX LTR_Ngaro 340543 341367 305 + . . scaffold772 GLEAN mRNA 336765 344045 0.544674 + . ID=CGI_10016594; scaffold40836 WUBlastX LINE_L2 81304 81825 100 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold40836 WUBlastX LINE_L2 81905 82570 154 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold1357 WUBlastX DNA_Maverick 79432 79560 51 - . . scaffold1357 GLEAN mRNA 78358 86116 0.978973 - . ID=CGI_10004038; scaffold544 WUBlastX DNA_TcMar-Tc1 251639 252103 239 - . . scaffold544 GLEAN mRNA 248926 297755 0.519606 - . ID=CGI_10022553; scaffold1680 WUBlastX LTR_Gypsy 73485 74465 376 + . . scaffold1680 GLEAN mRNA 60137 87573 0.648461 - . ID=CGI_10004140; scaffold1849 WUBlastX LTR_Gypsy 134232 134750 285 - . . scaffold1849 GLEAN mRNA 132203 140711 0.7781 + . ID=CGI_10015917; scaffold1849 WUBlastX LTR_Gypsy 134699 135022 177 - . . scaffold1849 GLEAN mRNA 132203 140711 0.7781 + . ID=CGI_10015917; scaffold365 WUBlastX LTR_Pao 248785 250491 265 + . . scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; scaffold1500 WUBlastX LTR_Gypsy 185661 186290 506 - . . scaffold1500 GLEAN mRNA 171651 188068 0.692586 - . ID=CGI_10007900; scaffold534 WUBlastX LTR_Gypsy-Cigr 67870 68166 214 - . . scaffold534 GLEAN mRNA 66095 75550 0.716363 + . ID=CGI_10005164; scaffold70 WUBlastX DNA_TcMar-Tc1 701726 701935 143 - . . scaffold70 GLEAN mRNA 689757 708725 0.811083 - . ID=CGI_10024788; scaffold70 WUBlastX DNA_TcMar-Tc1 701932 702462 223 - . . scaffold70 GLEAN mRNA 689757 708725 0.811083 - . ID=CGI_10024788; scaffold1508 WUBlastX DNA_TcMar-Tc1 143699 144730 417 + . . scaffold1508 GLEAN mRNA 116630 145116 0.499376 - . ID=CGI_10007806; scaffold1687 WUBlastX DNA_IS4EU 176920 177084 52 + . . scaffold1687 GLEAN mRNA 175921 180780 0.898283 + . ID=CGI_10008394; scaffold19 WUBlastX LTR_DIRS 139017 139592 196 - . . scaffold19 GLEAN mRNA 112664 148277 0.596648 - . ID=CGI_10010836; scaffold19 WUBlastX LTR_DIRS 139673 140113 140 - . . scaffold19 GLEAN mRNA 112664 148277 0.596648 - . ID=CGI_10010836; scaffold41372 WUBlastX LINE_L1 72502 73113 66 - . . scaffold41372 GLEAN mRNA 67893 79286 0.261998 + . ID=CGI_10005012; scaffold1579 WUBlastX LINE_RTE-X 326463 327233 180 + . . scaffold1579 GLEAN mRNA 320598 331843 0.999956 + . ID=CGI_10016869; scaffold192 WUBlastX DNA_Sola 24964 25320 156 - . . scaffold192 GLEAN mRNA 23550 26296 0.999536 - . ID=CGI_10023697; scaffold509 WUBlastX LINE_L1 258279 258542 82 + . . scaffold509 GLEAN mRNA 253981 269937 0.999344 + . ID=CGI_10018647; scaffold288 WUBlastX LINE_CR1 39402 39707 61 - . . scaffold288 GLEAN mRNA 38387 49127 0.651135 + . ID=CGI_10020657; scaffold36 WUBlastX LTR_Pao 7161 7292 50 + . . scaffold36 GLEAN mRNA 2519 8438 0.614104 + . ID=CGI_10001028; scaffold713 WUBlastX LINE_CR1-L2 405655 405918 35 - . . scaffold713 GLEAN mRNA 384658 415279 0.728047 - . ID=CGI_10017760; scaffold513 WUBlastX DNA_IS4EU 156684 156857 46 - . . scaffold513 GLEAN mRNA 149609 156857 0.819622 - . ID=CGI_10022138; scaffold619 WUBlastX DNA_hAT-Tip100 487161 487574 71 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold102 WUBlastX LINE_R2-Hero 932316 932432 25 - . . scaffold102 GLEAN mRNA 930119 940235 0.678096 - . ID=CGI_10028458; scaffold579 WUBlastX LINE_Penelope 216789 217115 29 - . . scaffold579 GLEAN mRNA 193436 221323 0.863149 + . ID=CGI_10011264; scaffold794 WUBlastX LINE_Penelope 75178 75546 24 + . . scaffold794 GLEAN mRNA 66441 78697 0.999826 + . ID=CGI_10017136; scaffold204 WUBlastX LINE_CR1 849993 850058 30 + . . scaffold204 GLEAN mRNA 840254 857007 0.756652 + . ID=CGI_10026136; scaffold332 WUBlastX DNA_TcMar-Marin 368188 368364 58 - . . scaffold332 GLEAN mRNA 366757 371898 1 - . ID=CGI_10020884; scaffold332 WUBlastX DNA_TcMar-Marin 368424 368492 24 - . . scaffold332 GLEAN mRNA 366757 371898 1 - . ID=CGI_10020884; scaffold42070 WUBlastX LINE_L1 67594 68067 28 - . . scaffold42070 GLEAN mRNA 63527 73059 0.466285 + . ID=CGI_10006078; scaffold775 WUBlastX LINE_L1 131840 131860 70 + . . scaffold775 GLEAN mRNA 131840 132127 0.775544 + . ID=CGI_10006095; scaffold962 WUBlastX LINE_CR1 747680 747811 78 + . . scaffold962 GLEAN mRNA 737761 749184 0.279681 - . ID=CGI_10027664; scaffold269 WUBlastX LINE_RTE-X 455924 456049 81 - . . scaffold269 GLEAN mRNA 436625 461028 0.269378 - . ID=CGI_10019006; scaffold705 WUBlastX LINE_RTE-BovB 56843 56971 28 + . . scaffold705 GLEAN mRNA 54891 78972 0.408277 - . ID=CGI_10015497; scaffold290 WUBlastX LINE_RTE-X 57974 58186 52 + . . scaffold290 GLEAN mRNA 51430 74485 0.815504 + . ID=CGI_10018531; scaffold160 WUBlastX DNA_hAT-Tip100 523852 523983 50 - . . scaffold160 GLEAN mRNA 523738 543493 0.85871 - . ID=CGI_10020606; scaffold160 WUBlastX DNA_hAT-Tip100 524212 524298 24 - . . scaffold160 GLEAN mRNA 523738 543493 0.85871 - . ID=CGI_10020606; scaffold1337 WUBlastX LINE_L2 281907 282356 54 - . . scaffold1337 GLEAN mRNA 281481 282728 0.999981 - . ID=CGI_10012842; scaffold42264 WUBlastX LINE_L2 77495 77944 47 + . . scaffold42264 GLEAN mRNA 77336 78370 0.999917 + . ID=CGI_10006519; scaffold392 WUBlastX LINE_CR1-L2 789259 789372 26 + . . scaffold392 GLEAN mRNA 784797 793663 0.791625 - . ID=CGI_10024236; scaffold149 WUBlastX LINE_L2 233780 233881 66 - . . scaffold149 GLEAN mRNA 233711 233881 0.960172 - . ID=CGI_10025296; scaffold290 WUBlastX LINE_CR1-L2 84299 84700 23 - . . scaffold290 GLEAN mRNA 78200 85856 0.613006 - . ID=CGI_10018533; scaffold43608 WUBlastX LTR_Copia 195440 195562 23 + . . scaffold43608 GLEAN mRNA 194894 195750 0.999918 - . ID=CGI_10011400; scaffold43608 WUBlastX LTR_Copia 195518 195562 23 + . . scaffold43608 GLEAN mRNA 195518 195799 0.6496 + . ID=CGI_10011401; scaffold102 WUBlastX DNA_hAT-Ac 1538274 1538573 64 - . . scaffold102 GLEAN mRNA 1532525 1541174 0.3501 - . ID=CGI_10028505; scaffold664 WUBlastX LTR_Gypsy 548045 548482 56 + . . scaffold664 GLEAN mRNA 547583 596494 0.239728 + . ID=CGI_10021456; scaffold107 WUBlastX RC_Helitron 135482 135763 86 - . . scaffold107 GLEAN mRNA 126838 146183 0.896861 - . ID=CGI_10025044; scaffold1825 WUBlastX LINE_L1 158483 159073 59 + . . scaffold1825 GLEAN mRNA 146338 162532 0.790331 + . ID=CGI_10011146; scaffold315 WUBlastX DNA_Kolobok 41568 41855 30 - . . scaffold315 GLEAN mRNA 38585 42231 0.984467 + . ID=CGI_10020399; scaffold433 WUBlastX DNA_Kolobok-Hyd 1184155 1184229 26 + . . scaffold433 GLEAN mRNA 1183988 1188682 0.999621 + . ID=CGI_10027115; scaffold433 WUBlastX DNA_Kolobok-Hyd 1185063 1185257 26 + . . scaffold433 GLEAN mRNA 1183988 1188682 0.999621 + . ID=CGI_10027115; scaffold752 WUBlastX LTR_ERV1 196783 197145 32 + . . scaffold752 GLEAN mRNA 196717 198051 0.998504 + . ID=CGI_10010042; scaffold1347 WUBlastX DNA_Maverick 326319 326438 40 + . . scaffold1347 GLEAN mRNA 315464 333991 0.924019 + . ID=CGI_10012984; scaffold38854 WUBlastX LINE_L1-Tx1 18758 18883 29 + . . scaffold38854 GLEAN mRNA 17499 20462 0.835209 + . ID=CGI_10003011; scaffold40164 WUBlastX LINE_L1-Tx1 8058 8108 34 + . . scaffold40164 GLEAN mRNA 2839 12364 0.429437 - . ID=CGI_10003898; scaffold348 WUBlastX LINE_L1-Tx1 181688 181900 26 - . . scaffold348 GLEAN mRNA 160739 182763 0.583298 + . ID=CGI_10022972; scaffold1149 WUBlastX LTR_Ngaro 126659 126955 27 + . . scaffold1149 GLEAN mRNA 123566 144809 0.531581 + . ID=CGI_10023452; scaffold457 WUBlastX DNA_TcMar-Marin 214510 214668 29 - . . scaffold457 GLEAN mRNA 213050 222173 0.400336 - . ID=CGI_10014534; scaffold1480 WUBlastX LINE_R2 77249 77285 91 - . . scaffold1480 GLEAN mRNA 77249 77533 0.999102 - . ID=CGI_10008636; scaffold1480 WUBlastX LINE_R2 77348 77470 29 - . . scaffold1480 GLEAN mRNA 77249 77533 0.999102 - . ID=CGI_10008636; scaffold43446 WUBlastX LINE_RTE-X 187899 188378 24 + . . scaffold43446 GLEAN mRNA 175111 204349 0.996568 - . ID=CGI_10010404; scaffold410 WUBlastX LINE_RTE-X 304348 304536 65 - . . scaffold410 GLEAN mRNA 298599 310174 0.996652 + . ID=CGI_10020635; scaffold43272 WUBlastX LTR_Gypsy-Cigr 119644 119844 102 - . . scaffold43272 GLEAN mRNA 115202 130908 0.999617 - . ID=CGI_10009669; scaffold1000 WUBlastX LINE_CR1 147491 147811 50 + . . scaffold1000 GLEAN mRNA 146750 156759 0.989263 + . ID=CGI_10013075; scaffold619 WUBlastX LTR_Gypsy 1071479 1071661 33 - . . scaffold619 GLEAN mRNA 1070584 1074375 0.856709 - . ID=CGI_10025801; scaffold35406 WUBlastX LTR_Gypsy-Cigr 9065 9145 25 - . . scaffold35406 GLEAN mRNA 1505 18996 0.688101 - . ID=CGI_10001499; scaffold43008 WUBlastX DNA_Harbinger 10969 11262 86 + . . scaffold43008 GLEAN mRNA 2147 17942 0.982229 + . ID=CGI_10008457; scaffold1018 WUBlastX DNA_MuDR 332526 332681 47 - . . scaffold1018 GLEAN mRNA 310333 332681 0.998378 - . ID=CGI_10019766; scaffold1525 WUBlastX LTR_Ngaro 354863 355090 69 + . . scaffold1525 GLEAN mRNA 345189 363927 0.815102 - . ID=CGI_10013870; scaffold459 WUBlastX LINE_RTE-X 92244 92348 24 + . . scaffold459 GLEAN mRNA 88021 99888 0.843454 + . ID=CGI_10018169; scaffold1132 WUBlastX DNA_TcMar-Tc1 210524 210898 78 + . . scaffold1132 GLEAN mRNA 207782 231438 0.973884 - . ID=CGI_10023314; scaffold42804 WUBlastX LINE_L1-Tx1 158850 159218 61 - . . scaffold42804 GLEAN mRNA 157232 161831 0.799839 - . ID=CGI_10007780; scaffold1101 WUBlastX DNA_IS4EU 540354 540479 37 + . . scaffold1101 GLEAN mRNA 537182 541543 0.997138 + . ID=CGI_10023032; scaffold911 WUBlastX LTR_Gypsy 96985 97215 58 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold610 WUBlastX DNA_IS4EU 105345 105563 86 - . . scaffold610 GLEAN mRNA 101538 106463 0.827114 + . ID=CGI_10021088; scaffold204 WUBlastX DNA_Harbinger 850982 851068 26 + . . scaffold204 GLEAN mRNA 840254 857007 0.756652 + . ID=CGI_10026136; scaffold419 WUBlastX LINE_RTE-X 1174115 1174294 112 - . . scaffold419 GLEAN mRNA 1162167 1183881 0.999027 - . ID=CGI_10028390; scaffold419 WUBlastX LINE_RTE-X 1174115 1174294 112 - . . scaffold419 GLEAN mRNA 1166148 1182818 0.728723 + . ID=CGI_10028391; scaffold43576 WUBlastX DNA_TcMar-Pogo 215990 216403 102 + . . scaffold43576 GLEAN mRNA 197837 232524 1 - . ID=CGI_10011134; scaffold41546 WUBlastX LINE_L2 48903 49376 95 - . . scaffold41546 GLEAN mRNA 38795 60206 0.986293 + . ID=CGI_10005268; scaffold40916 WUBlastX LINE_L2 38428 38901 95 + . . scaffold40916 GLEAN mRNA 5250 52256 0.246631 + . ID=CGI_10004570; scaffold967 WUBlastX DNA_hAT-Tip100 231495 231710 116 + . . scaffold967 GLEAN mRNA 210935 232101 0.931586 + . ID=CGI_10015461; scaffold354 WUBlastX LINE_Penelope 128298 128726 76 - . . scaffold354 GLEAN mRNA 123850 132843 0.496488 + . ID=CGI_10025699; scaffold1603 WUBlastX DNA_P 58274 58987 22 - . . scaffold1603 GLEAN mRNA 44108 68236 0.999997 - . ID=CGI_10012816; scaffold315 WUBlastX DNA_hAT 393263 393394 26 - . . scaffold315 GLEAN mRNA 391071 395852 1 - . ID=CGI_10020424; scaffold35478 WUBlastX DNA_Crypton 9653 10273 56 + . . scaffold35478 GLEAN mRNA 1378 24674 0.687089 - . ID=CGI_10001535; scaffold35478 WUBlastX DNA_Crypton 10646 10987 69 + . . scaffold35478 GLEAN mRNA 1378 24674 0.687089 - . ID=CGI_10001535; scaffold1318 WUBlastX DNA_TcMar-Tc1 47787 47987 27 + . . scaffold1318 GLEAN mRNA 47679 59079 0.328272 + . ID=CGI_10008644; scaffold619 WUBlastX LTR_Ngaro 485379 485759 95 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold102 WUBlastX LINE_RTE-X 971394 971495 73 - . . scaffold102 GLEAN mRNA 961541 993549 0.838657 - . ID=CGI_10028460; scaffold1136 WUBlastX LINE_RTE-X 46024 46506 103 + . . scaffold1136 GLEAN mRNA 45613 63125 0.999895 + . ID=CGI_10003080; scaffold1402 WUBlastX LINE_RTE-X 157826 158209 62 + . . scaffold1402 GLEAN mRNA 154950 158880 0.996561 - . ID=CGI_10017580; scaffold3 WUBlastX LINE_L1-Tx1 369660 369944 78 - . . scaffold3 GLEAN mRNA 362573 374344 0.984893 - . ID=CGI_10027291; scaffold86 WUBlastX LTR_Pao 200791 201822 23 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold247 WUBlastX LTR_DIRS 327904 328095 119 + . . scaffold247 GLEAN mRNA 324544 333278 0.675637 - . ID=CGI_10018594; scaffold42076 WUBlastX DNA_Harbinger 144395 144664 109 + . . scaffold42076 GLEAN mRNA 138926 144974 1 - . ID=CGI_10006087; scaffold1259 WUBlastX LINE_L1 13109 13300 77 + . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold1149 WUBlastX LINE_Penelope 39439 39978 69 + . . scaffold1149 GLEAN mRNA 36464 66919 0.42199 + . ID=CGI_10023447; scaffold1665 WUBlastX LINE_RTE-X 134062 134331 114 + . . scaffold1665 GLEAN mRNA 129924 142467 0.651132 - . ID=CGI_10015200; scaffold42850 WUBlastX LINE_RTE-X 10831 11076 120 + . . scaffold42850 GLEAN mRNA 3662 13171 0.999996 + . ID=CGI_10007918; scaffold1869 WUBlastX DNA_Sola 15890 15991 22 + . . scaffold1869 GLEAN mRNA 8009 37015 0.526029 - . ID=CGI_10009011; scaffold1869 WUBlastX DNA_Sola 15890 15991 22 + . . scaffold1869 GLEAN mRNA 11164 16956 0.999984 + . ID=CGI_10009012; scaffold42788 WUBlastX LINE_L2 26088 26396 110 - . . scaffold42788 GLEAN mRNA 24369 91602 0.998319 - . ID=CGI_10007754; scaffold686 WUBlastX LINE_CR1-L2 2581 2892 129 - . . scaffold686 GLEAN mRNA 377 5602 0.998023 - . ID=CGI_10004460; scaffold43182 WUBlastX LTR_Gypsy 166299 166466 51 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold38292 WUBlastX LTR_Gypsy 46449 47204 130 + . . scaffold38292 GLEAN mRNA 45996 48404 0.696819 + . ID=CGI_10002692; scaffold591 WUBlastX LTR_Ngaro 602580 603263 20 - . . scaffold591 GLEAN mRNA 577441 607957 0.997895 + . ID=CGI_10027576; scaffold504 WUBlastX LTR_Gypsy 6545 7147 125 + . . scaffold504 GLEAN mRNA 4327 7355 1 - . ID=CGI_10016012; scaffold402 WUBlastX LINE_L1 517662 517847 77 + . . scaffold402 GLEAN mRNA 514262 530560 0.999749 + . ID=CGI_10019333; scaffold630 WUBlastX LINE_RTE-X 85669 86301 63 + . . scaffold630 GLEAN mRNA 80549 90707 0.970045 - . ID=CGI_10018325; scaffold588 WUBlastX LINE_L1 151530 152063 93 - . . scaffold588 GLEAN mRNA 132834 155339 0.82921 + . ID=CGI_10016211; scaffold43008 WUBlastX DNA_Kolobok-Hyd 33794 33811 53 - . . scaffold43008 GLEAN mRNA 18841 33811 0.999674 - . ID=CGI_10008458; scaffold352 WUBlastX DNA_PiggyBac 312286 312924 154 + . . scaffold352 GLEAN mRNA 309286 319403 1 + . ID=CGI_10012251; scaffold546 WUBlastX LINE_RTE-X 36487 36726 107 - . . scaffold546 GLEAN mRNA 24963 48088 0.999351 + . ID=CGI_10020990; scaffold1021 WUBlastX LTR_DIRS 103677 103769 26 + . . scaffold1021 GLEAN mRNA 100590 130334 0.994213 + . ID=CGI_10022484; scaffold1021 WUBlastX LTR_DIRS 104739 104852 36 + . . scaffold1021 GLEAN mRNA 100590 130334 0.994213 + . ID=CGI_10022484; scaffold1021 WUBlastX LTR_DIRS 104843 105007 46 + . . scaffold1021 GLEAN mRNA 100590 130334 0.994213 + . ID=CGI_10022484; scaffold481 WUBlastX LTR_Gypsy 1226105 1227499 798 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold1154 WUBlastX LTR_DIRS 634460 635167 347 - . . scaffold1154 GLEAN mRNA 592712 637655 0.191782 - . ID=CGI_10026178; scaffold1154 WUBlastX LTR_DIRS 634460 635167 347 - . . scaffold1154 GLEAN mRNA 624576 639648 0.593391 + . ID=CGI_10026180; scaffold1154 WUBlastX LTR_DIRS 635166 635705 119 - . . scaffold1154 GLEAN mRNA 592712 637655 0.191782 - . ID=CGI_10026178; scaffold1154 WUBlastX LTR_DIRS 635166 635705 119 - . . scaffold1154 GLEAN mRNA 624576 639648 0.593391 + . ID=CGI_10026180; scaffold1154 WUBlastX LTR_DIRS 635716 636096 226 - . . scaffold1154 GLEAN mRNA 592712 637655 0.191782 - . ID=CGI_10026178; scaffold1154 WUBlastX LTR_DIRS 635716 636096 226 - . . scaffold1154 GLEAN mRNA 624576 639648 0.593391 + . ID=CGI_10026180; scaffold1154 WUBlastX LTR_DIRS 636529 637512 160 - . . scaffold1154 GLEAN mRNA 592712 637655 0.191782 - . ID=CGI_10026178; scaffold1154 WUBlastX LTR_DIRS 636529 637512 160 - . . scaffold1154 GLEAN mRNA 624576 639648 0.593391 + . ID=CGI_10026180; scaffold1024 WUBlastX LTR_Gypsy 989654 989707 20 + . . scaffold1024 GLEAN mRNA 986108 994171 0.999235 - . ID=CGI_10028555; scaffold602 WUBlastX DNA_Harbinger 616946 617272 62 - . . scaffold602 GLEAN mRNA 616228 617272 1 - . ID=CGI_10023197; scaffold925 WUBlastX LTR_DIRS 140016 140459 146 - . . scaffold925 GLEAN mRNA 124334 157225 0.393067 - . ID=CGI_10017412; scaffold113 WUBlastX DNA_MuDR 589474 589635 24 - . . scaffold113 GLEAN mRNA 582017 590807 0.980826 - . ID=CGI_10021294; scaffold1445 WUBlastX LTR_Gypsy 222397 222723 20 - . . scaffold1445 GLEAN mRNA 215438 231778 0.644744 - . ID=CGI_10010374; scaffold1445 WUBlastX LTR_Gypsy 226294 226620 20 - . . scaffold1445 GLEAN mRNA 215438 231778 0.644744 - . ID=CGI_10010374; scaffold1445 WUBlastX LTR_Gypsy 226977 227303 20 - . . scaffold1445 GLEAN mRNA 215438 231778 0.644744 - . ID=CGI_10010374; scaffold396 WUBlastX LINE_RTE-X 204431 204700 169 + . . scaffold396 GLEAN mRNA 196799 208805 0.948886 - . ID=CGI_10018103; scaffold544 WUBlastX DNA_TcMar-Pogo 739030 739380 105 + . . scaffold544 GLEAN mRNA 727518 748903 0.982522 - . ID=CGI_10022583; scaffold1705 WUBlastX LTR_Gypsy 95273 95989 46 - . . scaffold1705 GLEAN mRNA 68885 100114 0.343232 + . ID=CGI_10007468; scaffold40076 WUBlastX LTR_Gypsy 62805 63179 133 + . . scaffold40076 GLEAN mRNA 50026 69256 0.72657 + . ID=CGI_10003787; scaffold1705 WUBlastX LTR_Gypsy 94904 95674 171 - . . scaffold1705 GLEAN mRNA 68885 100114 0.343232 + . ID=CGI_10007468; scaffold1525 WUBlastX LTR_Ngaro 354539 355093 30 + . . scaffold1525 GLEAN mRNA 345189 363927 0.815102 - . ID=CGI_10013870; scaffold1639 WUBlastX DNA_Harbinger 34573 35022 60 + . . scaffold1639 GLEAN mRNA 27466 42582 0.863535 + . ID=CGI_10005437; scaffold1715 WUBlastX LINE_Penelope 328146 328367 33 + . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold184 WUBlastX DNA_PiggyBac 251429 251776 183 - . . scaffold184 GLEAN mRNA 248871 256134 0.689082 + . ID=CGI_10014799; scaffold43574 WUBlastX LINE_RTE-X 186708 187181 125 - . . scaffold43574 GLEAN mRNA 179931 197375 0.814122 + . ID=CGI_10010880; scaffold161 WUBlastX LTR_DIRS 110495 112582 1405 + . . scaffold161 GLEAN mRNA 106688 117037 0.832376 + . ID=CGI_10008589; scaffold1549 WUBlastX LINE_L1-Tx1 7825 8334 96 + . . scaffold1549 GLEAN mRNA 4210 11718 0.999526 - . ID=CGI_10002845; scaffold352 WUBlastX DNA_PiggyBac 311545 311724 32 + . . scaffold352 GLEAN mRNA 309286 319403 1 + . ID=CGI_10012251; scaffold1221 WUBlastX LINE_L1-Tx1 525965 526258 83 + . . scaffold1221 GLEAN mRNA 522455 543272 0.967384 + . ID=CGI_10019749; scaffold1857 WUBlastX LTR_Gypsy-Cigr 437094 437669 195 + . . scaffold1857 GLEAN mRNA 436788 451915 0.375837 + . ID=CGI_10020210; scaffold226 WUBlastX LTR_DIRS 463022 464128 58 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold1532 WUBlastX LTR_Ngaro 1133710 1133892 58 - . . scaffold1532 GLEAN mRNA 1127066 1152811 0.992288 + . ID=CGI_10028283; scaffold1532 WUBlastX LTR_Ngaro 1133882 1134196 66 - . . scaffold1532 GLEAN mRNA 1127066 1152811 0.992288 + . ID=CGI_10028283; scaffold365 WUBlastX DNA_Kolobok 284594 284701 36 + . . scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; scaffold365 WUBlastX DNA_Kolobok 286218 286436 90 + . . scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; scaffold41162 WUBlastX LTR_Gypsy 88562 89326 185 - . . scaffold41162 GLEAN mRNA 73852 107906 0.526733 + . ID=CGI_10004777; scaffold43272 WUBlastX DNA_Kolobok 114713 114868 51 - . . scaffold43272 GLEAN mRNA 114590 115074 1 - . ID=CGI_10009668; scaffold43272 WUBlastX DNA_Kolobok 115271 115468 78 - . . scaffold43272 GLEAN mRNA 115202 130908 0.999617 - . ID=CGI_10009669; scaffold43272 WUBlastX DNA_Kolobok 115647 115781 81 - . . scaffold43272 GLEAN mRNA 115202 130908 0.999617 - . ID=CGI_10009669; scaffold22 WUBlastX DNA_NOF 1316464 1316772 137 + . . scaffold22 GLEAN mRNA 1296873 1324907 0.541396 + . ID=CGI_10028906; scaffold22 WUBlastX DNA_NOF 1317043 1317144 58 + . . scaffold22 GLEAN mRNA 1296873 1324907 0.541396 + . ID=CGI_10028906; scaffold22 WUBlastX DNA_NOF 1317732 1317866 21 + . . scaffold22 GLEAN mRNA 1296873 1324907 0.541396 + . ID=CGI_10028906; scaffold226 WUBlastX LINE_RTE-X 1052956 1053261 115 - . . scaffold226 GLEAN mRNA 1050620 1061522 0.99513 - . ID=CGI_10025399; scaffold975 WUBlastX LINE_RTE-BovB 130246 130725 165 + . . scaffold975 GLEAN mRNA 123992 132770 1 - . ID=CGI_10013325; scaffold43406 WUBlastX LINE_RTE-BovB 82157 82549 243 - . . scaffold43406 GLEAN mRNA 81497 87547 0.998098 + . ID=CGI_10010210; scaffold1155 WUBlastX LTR_Gypsy 183866 183943 22 + . . scaffold1155 GLEAN mRNA 180232 184015 0.838121 + . ID=CGI_10007798; scaffold896 WUBlastX LINE_L1-Tx1 247207 247746 80 + . . scaffold896 GLEAN mRNA 238310 251019 0.969948 - . ID=CGI_10022839; scaffold118 WUBlastX LINE_L2 74209 77424 1801 + . . scaffold118 GLEAN mRNA 64475 78115 0.835706 + . ID=CGI_10004583; scaffold1062 WUBlastX DNA_Crypton 107436 108287 188 + . . scaffold1062 GLEAN mRNA 100465 126410 0.975343 - . ID=CGI_10005742; scaffold63 WUBlastX DNA_TcMar-Tc1 143541 144581 202 + . . scaffold63 GLEAN mRNA 141574 168555 0.999839 + . ID=CGI_10017272; scaffold1532 WUBlastX LTR_Ngaro 639358 640545 257 + . . scaffold1532 GLEAN mRNA 638492 642462 0.995183 + . ID=CGI_10028264; scaffold37500 WUBlastX LINE_RTE-X 26760 26795 22 - . . scaffold37500 GLEAN mRNA 16467 40519 0.193393 - . ID=CGI_10002382; scaffold354 WUBlastX LINE_L2 488456 488923 76 - . . scaffold354 GLEAN mRNA 486223 493126 0.637462 - . ID=CGI_10025720; scaffold22 WUBlastX LINE_L1-Tx1 1082330 1083010 79 + . . scaffold22 GLEAN mRNA 1079633 1088835 0.644932 - . ID=CGI_10028896; scaffold1863 WUBlastX DNA_hAT-hATw 259152 260114 127 + . . scaffold1863 GLEAN mRNA 253566 292141 0.240564 - . ID=CGI_10016692; scaffold588 WUBlastX LINE_L1-Tx1 151758 152042 183 - . . scaffold588 GLEAN mRNA 132834 155339 0.82921 + . ID=CGI_10016211; scaffold4 WUBlastX LINE_L1 474620 474676 20 - . . scaffold4 GLEAN mRNA 463325 481913 0.998731 + . ID=CGI_10021180; scaffold1704 WUBlastX LINE_RTE-X 39455 40327 235 - . . scaffold1704 GLEAN mRNA 35457 41695 0.675217 - . ID=CGI_10010162; scaffold117 WUBlastX DNA_Kolobok 245003 245308 144 + . . scaffold117 GLEAN mRNA 233426 248341 0.648025 + . ID=CGI_10016961; scaffold117 WUBlastX DNA_Kolobok 246458 246673 62 + . . scaffold117 GLEAN mRNA 233426 248341 0.648025 + . ID=CGI_10016961; scaffold117 WUBlastX DNA_Kolobok 246977 247213 72 + . . scaffold117 GLEAN mRNA 233426 248341 0.648025 + . ID=CGI_10016961; scaffold751 WUBlastX LTR_Gypsy 120513 120749 77 - . . scaffold751 GLEAN mRNA 116903 123513 0.999997 + . ID=CGI_10017386; scaffold751 WUBlastX LTR_Gypsy 120789 121157 192 - . . scaffold751 GLEAN mRNA 116903 123513 0.999997 + . ID=CGI_10017386; scaffold317 WUBlastX DNA_Maverick 159164 159307 115 + . . scaffold317 GLEAN mRNA 153090 159310 0.520587 + . ID=CGI_10019347; scaffold1862 WUBlastX LINE_L1-Tx1 191071 191376 72 + . . scaffold1862 GLEAN mRNA 170077 209119 0.953083 - . ID=CGI_10021893; scaffold38978 WUBlastX DNA_Harbinger 7880 8131 231 - . . scaffold38978 GLEAN mRNA 443 10686 0.499437 + . ID=CGI_10003126; scaffold38978 WUBlastX DNA_Harbinger 7880 8131 231 - . . scaffold38978 GLEAN mRNA 7539 8521 0.655792 - . ID=CGI_10003127; scaffold3 WUBlastX LTR_Ngaro 1315852 1316739 69 - . . scaffold3 GLEAN mRNA 1314645 1318382 0.999612 - . ID=CGI_10027337; scaffold1670 WUBlastX LINE_CR1 399064 399243 84 + . . scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; scaffold1826 WUBlastX LTR_Gypsy 39953 40141 44 + . . scaffold1826 GLEAN mRNA 39665 57424 0.756838 + . ID=CGI_10006241; scaffold1826 WUBlastX LTR_Gypsy 40984 41181 107 + . . scaffold1826 GLEAN mRNA 39665 57424 0.756838 + . ID=CGI_10006241; scaffold1788 WUBlastX LINE_L1-Tx1 51760 52389 25 + . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold400 WUBlastX LINE_CR1 266436 267059 44 - . . scaffold400 GLEAN mRNA 262709 267661 0.544852 - . ID=CGI_10011440; scaffold1132 WUBlastX LINE_RTE-X 421706 422011 90 + . . scaffold1132 GLEAN mRNA 413110 426704 0.743295 - . ID=CGI_10023318; scaffold911 WUBlastX LINE_L1 162770 163987 274 - . . scaffold911 GLEAN mRNA 159613 170351 0.499121 + . ID=CGI_10012141; scaffold315 WUBlastX DNA_hAT 395076 395852 427 - . . scaffold315 GLEAN mRNA 391071 395852 1 - . ID=CGI_10020424; scaffold1719 WUBlastX LTR_Ngaro 196886 197155 81 - . . scaffold1719 GLEAN mRNA 177172 199114 0.99732 - . ID=CGI_10014281; scaffold1719 WUBlastX LTR_Ngaro 197175 197252 52 - . . scaffold1719 GLEAN mRNA 177172 199114 0.99732 - . ID=CGI_10014281; scaffold1097 WUBlastX LTR_Ngaro 577004 577849 205 + . . scaffold1097 GLEAN mRNA 566282 590466 0.579339 - . ID=CGI_10024535; scaffold1791 WUBlastX LTR_Ngaro 99465 100451 362 + . . scaffold1791 GLEAN mRNA 83527 103062 0.896369 - . ID=CGI_10007868; scaffold40134 WUBlastX DNA_Maverick 50796 50885 29 - . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold41346 WUBlastX DNA_TcMar-Marin 18260 18784 320 - . . scaffold41346 GLEAN mRNA 15464 31699 0.862252 + . ID=CGI_10004998; scaffold1350 WUBlastX LINE_RTE-X 397927 398334 157 - . . scaffold1350 GLEAN mRNA 393414 411683 0.728523 + . ID=CGI_10017317; scaffold432 WUBlastX LINE_L2 244285 245301 66 - . . scaffold432 GLEAN mRNA 235322 257919 0.999925 + . ID=CGI_10023091; scaffold1103 WUBlastX LINE_L2 12648 12971 83 + . . scaffold1103 GLEAN mRNA 2927 17962 0.836195 - . ID=CGI_10004868; scaffold43076 WUBlastX LTR_Gypsy 195518 195919 74 - . . scaffold43076 GLEAN mRNA 186716 211039 0.795025 + . ID=CGI_10008770; scaffold619 WUBlastX DNA_hAT-Ac 486264 487511 257 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold619 WUBlastX DNA_hAT-Ac 487615 487692 39 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold619 WUBlastX DNA_hAT-Ac 488220 488606 87 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold1687 WUBlastX DNA_IS4EU 177195 177815 361 + . . scaffold1687 GLEAN mRNA 175921 180780 0.898283 + . ID=CGI_10008394; scaffold1687 WUBlastX DNA_IS4EU 178375 178560 98 + . . scaffold1687 GLEAN mRNA 175921 180780 0.898283 + . ID=CGI_10008394; scaffold40894 WUBlastX DNA_hAT 50173 51843 558 + . . scaffold40894 GLEAN mRNA 44869 65614 1 + . ID=CGI_10004538; scaffold43538 WUBlastX LTR_Gypsy 32677 34578 444 + . . scaffold43538 GLEAN mRNA 31086 35366 0.988787 - . ID=CGI_10010813; scaffold1350 WUBlastX LTR_Gypsy 119245 119892 556 + . . scaffold1350 GLEAN mRNA 116715 124816 0.68864 + . ID=CGI_10017298; scaffold1350 WUBlastX LTR_Gypsy 119245 119892 556 + . . scaffold1350 GLEAN mRNA 92477 120800 0.694726 - . ID=CGI_10017297; scaffold22 WUBlastX LINE_L2 1085013 1085276 135 + . . scaffold22 GLEAN mRNA 1079633 1088835 0.644932 - . ID=CGI_10028896; C26936 WUBlastX LTR_Gypsy 1484 2260 314 - . . C26936 GLEAN mRNA 652 3529 1 - . ID=CGI_10000336; scaffold93 WUBlastX DNA_Kolobok 17189 18688 547 + . . scaffold93 GLEAN mRNA 16355 18715 0.999695 + . ID=CGI_10002718; scaffold498 WUBlastX DNA_Sola 232594 233475 442 - . . scaffold498 GLEAN mRNA 228451 286019 0.470322 + . ID=CGI_10012431; scaffold39754 WUBlastX LTR_Pao 12162 12515 54 + . . scaffold39754 GLEAN mRNA 11997 16678 0.584385 + . ID=CGI_10003598; scaffold44098 WUBlastX LINE_CR1 194641 195459 476 + . . scaffold44098 GLEAN mRNA 188555 213785 0.544557 + . ID=CGI_10017708; scaffold1673 WUBlastX LINE_L1-Tx1 99172 100023 477 + . . scaffold1673 GLEAN mRNA 58935 108305 0.828275 + . ID=CGI_10013571; scaffold1673 WUBlastX LINE_L1-Tx1 100031 100969 158 + . . scaffold1673 GLEAN mRNA 58935 108305 0.828275 + . ID=CGI_10013571; scaffold1862 WUBlastX LINE_L1-Tx1 195171 196733 335 + . . scaffold1862 GLEAN mRNA 170077 209119 0.953083 - . ID=CGI_10021893; scaffold1401 WUBlastX LINE_RTE-X 3211 4437 616 - . . scaffold1401 GLEAN mRNA 431 6619 0.997038 - . ID=CGI_10001278; scaffold1401 WUBlastX LINE_RTE-X 4653 5426 148 - . . scaffold1401 GLEAN mRNA 431 6619 0.997038 - . ID=CGI_10001278; scaffold1213 WUBlastX LTR_Ngaro 1133426 1133851 204 - . . scaffold1213 GLEAN mRNA 1112945 1137379 0.247457 - . ID=CGI_10027485; scaffold1213 WUBlastX LTR_Ngaro 1133881 1134120 140 - . . scaffold1213 GLEAN mRNA 1112945 1137379 0.247457 - . ID=CGI_10027485; scaffold1213 WUBlastX LTR_Ngaro 1134060 1134962 496 - . . scaffold1213 GLEAN mRNA 1112945 1137379 0.247457 - . ID=CGI_10027485; scaffold37500 WUBlastX DNA_Chapaev 3929 4069 34 - . . scaffold37500 GLEAN mRNA 3122 8833 0.619262 - . ID=CGI_10002381; C35068 WUBlastX DNA_hAT-Tip100 7386 7673 76 + . . C35068 GLEAN mRNA 2139 13943 0.995001 + . ID=CGI_10001414; scaffold807 WUBlastX DNA_hAT 107704 107946 76 + . . scaffold807 GLEAN mRNA 89667 111642 0.966284 - . ID=CGI_10011456; scaffold34 WUBlastX LINE_L2 106523 106729 44 - . . scaffold34 GLEAN mRNA 88722 107323 0.942408 + . ID=CGI_10015930; scaffold1333 WUBlastX DNA?_Crypton? 54157 54510 28 - . . scaffold1333 GLEAN mRNA 51293 57849 0.723221 - . ID=CGI_10009674; scaffold705 WUBlastX DNA_IS4EU 327478 327894 71 + . . scaffold705 GLEAN mRNA 326554 329531 0.318359 + . ID=CGI_10015516; scaffold1199 WUBlastX DNA_IS4EU 141064 141372 59 - . . scaffold1199 GLEAN mRNA 141058 141372 0.573317 - . ID=CGI_10005932; C30500 WUBlastX DNA_IS4EU 6631 6921 79 - . . C30500 GLEAN mRNA 2155 6921 0.993024 - . ID=CGI_10000629; scaffold664 WUBlastX RC_Helitron 660282 660518 40 - . . scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold664 WUBlastX RC_Helitron 660584 660667 20 - . . scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold186 WUBlastX DNA_Kolobok-Hyd 26264 26612 26 + . . scaffold186 GLEAN mRNA 25622 26612 0.366701 + . ID=CGI_10012602; scaffold186 WUBlastX DNA_Kolobok-Hyd 26657 27292 26 + . . scaffold186 GLEAN mRNA 26657 27313 0.617824 + . ID=CGI_10012603; scaffold1703 WUBlastX DNA_Kolobok-Hyd 152695 153045 31 - . . scaffold1703 GLEAN mRNA 141021 153045 0.525157 - . ID=CGI_10023043; scaffold934 WUBlastX LINE_L1 245605 245904 37 + . . scaffold934 GLEAN mRNA 244426 254135 0.975523 + . ID=CGI_10015445; scaffold541 WUBlastX LINE_L1 106155 106574 50 + . . scaffold541 GLEAN mRNA 106056 107192 0.777728 + . ID=CGI_10022378; scaffold1442 WUBlastX LINE_L1 19847 19954 22 - . . scaffold1442 GLEAN mRNA 5012 20569 0.987275 - . ID=CGI_10003583; scaffold313 WUBlastX LINE_L1-Tx1 1018790 1019044 41 - . . scaffold313 GLEAN mRNA 1014206 1026476 0.354197 - . ID=CGI_10026633; scaffold1789 WUBlastX DNA_TcMar-Tc1 26240 26605 61 - . . scaffold1789 GLEAN mRNA 24055 30627 0.651132 - . ID=CGI_10003176; scaffold1769 WUBlastX LTR_Gypsy 91038 91286 22 + . . scaffold1769 GLEAN mRNA 91038 92183 1 + . ID=CGI_10009237; scaffold1600 WUBlastX LINE_Proto2 194791 195834 40 + . . scaffold1600 GLEAN mRNA 182749 197532 0.996574 - . ID=CGI_10013039; scaffold363 WUBlastX LTR_Gypsy 501162 501521 44 - . . scaffold363 GLEAN mRNA 500751 501623 1 - . ID=CGI_10019310; scaffold733 WUBlastX LINE_DRE 431961 432005 23 + . . scaffold733 GLEAN mRNA 408619 548638 0.684241 + . ID=CGI_10025876; scaffold1241 WUBlastX LINE_L2 330764 330934 22 + . . scaffold1241 GLEAN mRNA 329086 342003 0.999796 + . ID=CGI_10016436; scaffold632 WUBlastX LTR_Pao 439691 440188 35 + . . scaffold632 GLEAN mRNA 439565 440200 0.99507 + . ID=CGI_10018459; scaffold625 WUBlastX LTR_Gypsy 64831 65205 83 + . . scaffold625 GLEAN mRNA 61573 68540 0.101218 + . ID=CGI_10023396; scaffold43272 WUBlastX LTR_Gypsy 119557 119838 75 - . . scaffold43272 GLEAN mRNA 115202 130908 0.999617 - . ID=CGI_10009669; scaffold867 WUBlastX LTR_Gypsy 884682 884837 32 + . . scaffold867 GLEAN mRNA 878150 885941 1 + . ID=CGI_10026242; scaffold1715 WUBlastX DNA_IS4EU 427782 428126 61 - . . scaffold1715 GLEAN mRNA 426914 428141 0.999981 - . ID=CGI_10019675; scaffold1031 WUBlastX LINE_Penelope 8808 9077 31 - . . scaffold1031 GLEAN mRNA 3884 11736 0.84103 - . ID=CGI_10019690; scaffold1315 WUBlastX LINE_L1 28275 28415 33 + . . scaffold1315 GLEAN mRNA 24729 31202 0.999612 + . ID=CGI_10021591; scaffold145 WUBlastX LINE_Jockey 1138274 1138450 49 - . . scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold721 WUBlastX LINE_CR1 350170 350463 59 + . . scaffold721 GLEAN mRNA 350044 360364 0.412686 + . ID=CGI_10022001; scaffold40440 WUBlastX LTR_Ngaro 54746 54973 54 + . . scaffold40440 GLEAN mRNA 51085 65707 0.320377 - . ID=CGI_10004144; scaffold751 WUBlastX LTR_Gypsy 117476 118057 64 - . . scaffold751 GLEAN mRNA 116903 123513 0.999997 + . ID=CGI_10017386; scaffold751 WUBlastX LTR_Gypsy 117476 117712 64 - . . scaffold751 GLEAN mRNA 117326 117712 0.59015 - . ID=CGI_10017387; scaffold1736 WUBlastX LINE_L1-Tx1 271881 272300 30 + . . scaffold1736 GLEAN mRNA 268738 276421 0.999662 + . ID=CGI_10020962; scaffold337 WUBlastX DNA_TcMar-Tc1 38261 38356 41 - . . scaffold337 GLEAN mRNA 31021 61245 0.967748 - . ID=CGI_10028049; scaffold337 WUBlastX DNA_TcMar-Tc1 38353 38463 61 - . . scaffold337 GLEAN mRNA 31021 61245 0.967748 - . ID=CGI_10028049; scaffold654 WUBlastX LINE_RTE-X 3469 3660 27 + . . scaffold654 GLEAN mRNA 1376 14130 0.499624 - . ID=CGI_10004182; scaffold42466 WUBlastX LINE_RTE-X 114798 115046 62 + . . scaffold42466 GLEAN mRNA 111968 131665 0.500645 + . ID=CGI_10006942; scaffold1160 WUBlastX DNA_hAT-Tip100 28577 28834 89 + . . scaffold1160 GLEAN mRNA 28577 28954 0.995277 + . ID=CGI_10015340; scaffold34942 WUBlastX DNA_hAT-Tip100 14903 15160 89 - . . scaffold34942 GLEAN mRNA 4327 15160 0.738571 - . ID=CGI_10001379; scaffold1052 WUBlastX LINE_L2 79154 79276 27 - . . scaffold1052 GLEAN mRNA 59893 79725 0.988141 - . ID=CGI_10005470; scaffold1671 WUBlastX RC_Helitron 226874 227017 42 + . . scaffold1671 GLEAN mRNA 221124 227498 0.633477 + . ID=CGI_10015147; scaffold210 WUBlastX LINE_I 141360 141755 68 + . . scaffold210 GLEAN mRNA 130765 152251 0.999676 - . ID=CGI_10015883; scaffold386 WUBlastX DNA_TcMar-Marin 87207 87461 70 + . . scaffold386 GLEAN mRNA 81379 108874 0.997229 - . ID=CGI_10012681; scaffold1032 WUBlastX DNA_Sola 22045 22872 66 + . . scaffold1032 GLEAN mRNA 21338 23952 0.840259 + . ID=CGI_10021656; scaffold507 WUBlastX LINE_CR1-L2 271188 271373 24 + . . scaffold507 GLEAN mRNA 254357 273838 0.999949 - . ID=CGI_10019093; scaffold1854 WUBlastX LTR_Ngaro 20882 21055 109 - . . scaffold1854 GLEAN mRNA 10780 21821 0.727692 - . ID=CGI_10004409; scaffold619 WUBlastX LTR_Ngaro 485316 485726 50 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold853 WUBlastX LTR_Gypsy 449462 449962 48 - . . scaffold853 GLEAN mRNA 448693 455013 0.999949 - . ID=CGI_10017517; scaffold90 WUBlastX LTR_Gypsy 140339 140539 107 + . . scaffold90 GLEAN mRNA 135730 142790 0.547035 + . ID=CGI_10015161; scaffold793 WUBlastX DNA_hAT-Blackja 62038 62319 50 - . . scaffold793 GLEAN mRNA 61685 72905 0.384935 + . ID=CGI_10010892; scaffold138 WUBlastX LINE_L1-Tx1 26103 26240 40 - . . scaffold138 GLEAN mRNA 800 34081 0.879441 + . ID=CGI_10008423; scaffold79 WUBlastX LINE_RTE-X 266088 266270 93 + . . scaffold79 GLEAN mRNA 257196 271359 0.644901 + . ID=CGI_10024620; scaffold1315 WUBlastX LINE_L1-Tx1 28430 28687 65 + . . scaffold1315 GLEAN mRNA 24729 31202 0.999612 + . ID=CGI_10021591; scaffold42570 WUBlastX LINE_CR1-L2 16343 16540 97 + . . scaffold42570 GLEAN mRNA 8098 32477 0.949085 + . ID=CGI_10007233; scaffold402 WUBlastX LINE_L1 517219 517314 65 + . . scaffold402 GLEAN mRNA 514262 530560 0.999749 + . ID=CGI_10019333; scaffold75 WUBlastX LTR_Pao 67159 67995 70 - . . scaffold75 GLEAN mRNA 46839 68019 0.92374 - . ID=CGI_10005790; scaffold432 WUBlastX DNA_Crypton 732124 732453 110 - . . scaffold432 GLEAN mRNA 728697 733393 0.995435 - . ID=CGI_10023120; scaffold1259 WUBlastX DNA 15516 15635 50 - . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold1221 WUBlastX DNA_PiggyBac 511087 511233 65 - . . scaffold1221 GLEAN mRNA 505287 514877 0.549954 - . ID=CGI_10019748; scaffold753 WUBlastX DNA_hAT 305120 305293 53 + . . scaffold753 GLEAN mRNA 305036 306849 0.999228 + . ID=CGI_10014209; scaffold753 WUBlastX DNA_hAT 305695 306210 57 + . . scaffold753 GLEAN mRNA 305036 306849 0.999228 + . ID=CGI_10014209; scaffold1205 WUBlastX DNA_Crypton 109567 109734 22 + . . scaffold1205 GLEAN mRNA 96361 112859 0.994073 - . ID=CGI_10004904; scaffold1205 WUBlastX DNA_Crypton 110065 110244 71 + . . scaffold1205 GLEAN mRNA 96361 112859 0.994073 - . ID=CGI_10004904; scaffold1600 WUBlastX LTR_DIRS 184624 184776 33 + . . scaffold1600 GLEAN mRNA 179369 186583 0.98626 + . ID=CGI_10013038; scaffold1600 WUBlastX LTR_DIRS 184624 184776 33 + . . scaffold1600 GLEAN mRNA 182749 197532 0.996574 - . ID=CGI_10013039; scaffold150 WUBlastX DNA_Kolobok 1580669 1581040 111 + . . scaffold150 GLEAN mRNA 1577225 1599619 0.685515 + . ID=CGI_10028690; scaffold150 WUBlastX DNA_Kolobok 1581581 1581649 25 + . . scaffold150 GLEAN mRNA 1577225 1599619 0.685515 + . ID=CGI_10028690; scaffold507 WUBlastX LINE_L1 38005 38184 77 + . . scaffold507 GLEAN mRNA 28082 39253 0.563608 + . ID=CGI_10019083; scaffold784 WUBlastX LINE_L1 185848 186534 65 + . . scaffold784 GLEAN mRNA 178600 195281 0.744931 - . ID=CGI_10024415; scaffold780 WUBlastX LTR_Ngaro 966954 967268 27 - . . scaffold780 GLEAN mRNA 959842 972028 0.999936 - . ID=CGI_10024749; scaffold976 WUBlastX DNA_TcMar-Tc1 49658 50002 51 - . . scaffold976 GLEAN mRNA 40652 60127 0.884558 - . ID=CGI_10014002; scaffold164 WUBlastX LTR_Gypsy 54523 54720 50 - . . scaffold164 GLEAN mRNA 40628 54980 0.99473 - . ID=CGI_10021845; scaffold445 WUBlastX DNA_Kolobok 174015 174257 60 + . . scaffold445 GLEAN mRNA 165031 179035 0.981925 - . ID=CGI_10019432; scaffold445 WUBlastX DNA_Kolobok 174015 174257 60 + . . scaffold445 GLEAN mRNA 157494 175078 0.500104 + . ID=CGI_10019431; scaffold445 WUBlastX DNA_Kolobok 174926 175063 21 + . . scaffold445 GLEAN mRNA 165031 179035 0.981925 - . ID=CGI_10019432; scaffold445 WUBlastX DNA_Kolobok 174926 175063 21 + . . scaffold445 GLEAN mRNA 157494 175078 0.500104 + . ID=CGI_10019431; scaffold569 WUBlastX LTR_DIRS 42271 42369 24 + . . scaffold569 GLEAN mRNA 32554 62247 0.974978 + . ID=CGI_10009494; scaffold569 WUBlastX LTR_DIRS 43353 43535 46 + . . scaffold569 GLEAN mRNA 32554 62247 0.974978 + . ID=CGI_10009494; scaffold880 WUBlastX LTR_Gypsy 512080 512406 133 + . . scaffold880 GLEAN mRNA 490990 515117 0.998312 - . ID=CGI_10022196; scaffold867 WUBlastX LINE_RTE-BovB 1135664 1135930 115 + . . scaffold867 GLEAN mRNA 1122368 1136269 0.61743 - . ID=CGI_10026263; scaffold58 WUBlastX LTR_Gypsy 571115 571660 161 - . . scaffold58 GLEAN mRNA 565797 572122 0.982335 - . ID=CGI_10023152; scaffold58 WUBlastX LTR_Gypsy 571115 571660 161 - . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; scaffold90 WUBlastX DNA_hAT-Ac 339277 339654 219 - . . scaffold90 GLEAN mRNA 319674 344915 0.945886 + . ID=CGI_10015172; scaffold90 WUBlastX DNA_hAT-Ac 340086 340202 39 - . . scaffold90 GLEAN mRNA 319674 344915 0.945886 + . ID=CGI_10015172; scaffold90 WUBlastX DNA_hAT-Ac 340124 341569 715 - . . scaffold90 GLEAN mRNA 319674 344915 0.945886 + . ID=CGI_10015172; scaffold43182 WUBlastX LTR_Gypsy 169423 170115 137 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold786 WUBlastX DNA_TcMar-Marin 364475 364915 137 + . . scaffold786 GLEAN mRNA 348664 365361 0.5 - . ID=CGI_10013709; scaffold1186 WUBlastX LINE_Penelope 240392 240832 93 + . . scaffold1186 GLEAN mRNA 224167 244631 0.351511 - . ID=CGI_10010599; scaffold1249 WUBlastX LINE_RTE-X 128253 129914 719 + . . scaffold1249 GLEAN mRNA 124551 131714 0.558382 + . ID=CGI_10019051; scaffold169 WUBlastX DNA_Sola 564668 565291 170 + . . scaffold169 GLEAN mRNA 562612 565291 1 + . ID=CGI_10022958; scaffold544 WUBlastX LINE_CR1-L2 617626 618090 127 + . . scaffold544 GLEAN mRNA 615493 630959 0.537216 - . ID=CGI_10022576; scaffold35014 WUBlastX DNA_PiggyBac 15391 15504 27 + . . scaffold35014 GLEAN mRNA 9316 21495 0.996281 + . ID=CGI_10001389; scaffold35014 WUBlastX DNA_PiggyBac 15939 16082 36 + . . scaffold35014 GLEAN mRNA 9316 21495 0.996281 + . ID=CGI_10001389; scaffold38784 WUBlastX DNA_Academ 42999 43343 167 - . . scaffold38784 GLEAN mRNA 30305 58600 0.503077 + . ID=CGI_10002994; scaffold1244 WUBlastX LINE_L1-Tx1 99832 100119 56 + . . scaffold1244 GLEAN mRNA 89223 101617 0.299139 + . ID=CGI_10020820; scaffold1104 WUBlastX LINE_RTE-X 164239 165129 281 + . . scaffold1104 GLEAN mRNA 162897 187197 0.499418 + . ID=CGI_10020361; scaffold38292 WUBlastX LTR_Gypsy-Cigr 46410 46913 190 + . . scaffold38292 GLEAN mRNA 45996 48404 0.696819 + . ID=CGI_10002692; scaffold1447 WUBlastX DNA_TcMar-Tc1 153118 153276 100 - . . scaffold1447 GLEAN mRNA 145066 154561 0.838589 - . ID=CGI_10013818; scaffold1352 WUBlastX DNA_TcMar-Tc1 172261 173013 153 - . . scaffold1352 GLEAN mRNA 168784 185855 0.640433 - . ID=CGI_10018412; scaffold1352 WUBlastX LINE_RTE-X 402990 403373 29 + . . scaffold1352 GLEAN mRNA 400458 408667 0.333165 + . ID=CGI_10018425; scaffold40680 WUBlastX DNA 46878 47024 32 - . . scaffold40680 GLEAN mRNA 46860 47045 0.545835 - . ID=CGI_10004355; scaffold440 WUBlastX LTR_Gypsy 286174 286659 76 + . . scaffold440 GLEAN mRNA 284962 311438 0.999351 + . ID=CGI_10014144; scaffold804 WUBlastX LTR_Gypsy-Cigr 166230 166892 298 - . . scaffold804 GLEAN mRNA 160406 170673 0.986312 - . ID=CGI_10014856; scaffold352 WUBlastX DNA_PiggyBac 312940 313056 40 + . . scaffold352 GLEAN mRNA 309286 319403 1 + . ID=CGI_10012251; scaffold896 WUBlastX LINE_RTE-X 437751 438032 51 - . . scaffold896 GLEAN mRNA 429849 443777 0.584747 + . ID=CGI_10022849; scaffold896 WUBlastX LINE_RTE-X 437751 438032 51 - . . scaffold896 GLEAN mRNA 434715 450263 0.551142 - . ID=CGI_10022850; scaffold1885 WUBlastX LINE_L1-Tx1 364698 365309 154 + . . scaffold1885 GLEAN mRNA 350853 371060 0.999501 + . ID=CGI_10013905; scaffold535 WUBlastX LINE_L1-Tx1 165614 169306 1353 + . . scaffold535 GLEAN mRNA 158110 184507 0.999251 + . ID=CGI_10020284; scaffold634 WUBlastX LTR_Gypsy-Cigr 15020 15559 175 - . . scaffold634 GLEAN mRNA 13613 16152 0.502171 - . ID=CGI_10004699; scaffold634 WUBlastX LTR_Gypsy-Cigr 15020 15559 175 - . . scaffold634 GLEAN mRNA 12476 30002 0.999899 + . ID=CGI_10004698; scaffold117 WUBlastX LTR_Gypsy-Cigr 381940 382479 174 + . . scaffold117 GLEAN mRNA 381424 383832 0.991601 + . ID=CGI_10016969; scaffold264 WUBlastX LTR_Gypsy 63714 64409 225 + . . scaffold264 GLEAN mRNA 55806 65386 0.919425 + . ID=CGI_10003463; scaffold1362 WUBlastX LTR_Gypsy 200288 202450 1167 + . . scaffold1362 GLEAN mRNA 196782 238172 0.653945 - . ID=CGI_10023934; scaffold1476 WUBlastX LINE_CR1-L2 172389 172553 21 + . . scaffold1476 GLEAN mRNA 169615 179488 0.862141 + . ID=CGI_10009826; scaffold42880 WUBlastX LINE_L1-Tx1 186826 188925 1176 + . . scaffold42880 GLEAN mRNA 184633 197786 1 - . ID=CGI_10007998; scaffold814 WUBlastX LINE_CR1 126235 126260 22 - . . scaffold814 GLEAN mRNA 126235 129167 1 - . ID=CGI_10008199; scaffold1423 WUBlastX DNA_Harbinger 672954 673109 78 + . . scaffold1423 GLEAN mRNA 653919 675880 0.821976 - . ID=CGI_10025436; scaffold141 WUBlastX LINE_L1 40147 40842 197 - . . scaffold141 GLEAN mRNA 34895 61533 0.989288 + . ID=CGI_10006580; scaffold733 WUBlastX LINE_L2 413102 413905 164 - . . scaffold733 GLEAN mRNA 408619 548638 0.684241 + . ID=CGI_10025876; scaffold165 WUBlastX LTR_Pao 198406 198786 27 - . . scaffold165 GLEAN mRNA 195130 200984 1 + . ID=CGI_10015323; scaffold896 WUBlastX LINE_R2-Hero 115117 115296 55 + . . scaffold896 GLEAN mRNA 79994 116374 0.57033 - . ID=CGI_10022832; scaffold209 WUBlastX DNA_hAT-Tip100 259352 259861 178 - . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold905 WUBlastX LINE_L1 4952 5833 87 + . . scaffold905 GLEAN mRNA 3174 14725 0.840832 + . ID=CGI_10004338; scaffold43842 WUBlastX LINE_RTE-X 219969 221180 210 - . . scaffold43842 GLEAN mRNA 211525 222543 0.557237 - . ID=CGI_10013105; scaffold721 WUBlastX LINE_L2 84424 84603 55 + . . scaffold721 GLEAN mRNA 68079 89248 0.992034 + . ID=CGI_10021995; scaffold191 WUBlastX LINE_RTE-X 555804 555926 21 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold71 WUBlastX LTR_Ngaro 272141 272872 269 + . . scaffold71 GLEAN mRNA 268268 281594 0.588785 + . ID=CGI_10015059; scaffold1880 WUBlastX LTR_Pao 191440 191916 364 + . . scaffold1880 GLEAN mRNA 190302 194144 1 - . ID=CGI_10008214; scaffold241 WUBlastX LINE_L1-Tx1 126079 127176 92 - . . scaffold241 GLEAN mRNA 108603 137659 0.55536 + . ID=CGI_10025092; scaffold1877 WUBlastX LINE_RTE-X 298061 298378 175 + . . scaffold1877 GLEAN mRNA 295978 306967 1 + . ID=CGI_10011963; scaffold1717 WUBlastX LINE_L2 41582 41917 26 - . . scaffold1717 GLEAN mRNA 33205 46915 0.558386 + . ID=CGI_10013390; scaffold378 WUBlastX LINE_L1-Tx1 240627 241904 227 - . . scaffold378 GLEAN mRNA 222180 244864 0.996816 + . ID=CGI_10017641; scaffold90 WUBlastX DNA_Crypton 389172 389720 225 + . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold365 WUBlastX LTR_Pao 248415 248756 60 + . . scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; scaffold274 WUBlastX DNA_En-Spm 52447 53223 238 - . . scaffold274 GLEAN mRNA 47250 68838 0.971857 - . ID=CGI_10017009; scaffold1879 WUBlastX LINE_CR1 120512 122272 357 - . . scaffold1879 GLEAN mRNA 117371 122368 1 - . ID=CGI_10007960; scaffold1561 WUBlastX LINE_RTE-X 98806 99525 260 - . . scaffold1561 GLEAN mRNA 90687 107153 0.999946 - . ID=CGI_10005694; scaffold504 WUBlastX LINE_RTE-X 113673 114935 393 + . . scaffold504 GLEAN mRNA 112041 122139 0.999999 - . ID=CGI_10016018; scaffold43210 WUBlastX DNA_TcMar-Tc1 190936 191289 186 + . . scaffold43210 GLEAN mRNA 171001 198787 0.693179 - . ID=CGI_10009448; scaffold43210 WUBlastX DNA_TcMar-Tc1 191253 191687 191 + . . scaffold43210 GLEAN mRNA 171001 198787 0.693179 - . ID=CGI_10009448; scaffold794 WUBlastX LINE_L1-Tx1 317235 318629 449 - . . scaffold794 GLEAN mRNA 308972 320828 0.696321 - . ID=CGI_10017155; scaffold1464 WUBlastX LTR_Gypsy 2980 3441 314 + . . scaffold1464 GLEAN mRNA 1479 25035 0.549445 + . ID=CGI_10003234; scaffold1084 WUBlastX LTR_DIRS 153618 154571 538 + . . scaffold1084 GLEAN mRNA 143113 160475 0.702333 + . ID=CGI_10010078; scaffold1299 WUBlastX LINE_RTE-BovB 139911 140441 234 - . . scaffold1299 GLEAN mRNA 132868 184987 0.923911 + . ID=CGI_10007586; scaffold1299 WUBlastX LINE_RTE-BovB 140527 140601 33 - . . scaffold1299 GLEAN mRNA 132868 184987 0.923911 + . ID=CGI_10007586; scaffold1299 WUBlastX LINE_RTE-BovB 141360 141473 71 - . . scaffold1299 GLEAN mRNA 132868 184987 0.923911 + . ID=CGI_10007586; scaffold6 WUBlastX LTR_Pao 129547 129606 20 + . . scaffold6 GLEAN mRNA 120164 144778 0.978215 - . ID=CGI_10022297; scaffold43686 WUBlastX DNA_Zator 183554 183778 39 - . . scaffold43686 GLEAN mRNA 172665 193661 0.978405 - . ID=CGI_10011758; scaffold43686 WUBlastX DNA_Zator 183928 184116 90 - . . scaffold43686 GLEAN mRNA 172665 193661 0.978405 - . ID=CGI_10011758; scaffold43686 WUBlastX DNA_Zator 184098 185006 290 - . . scaffold43686 GLEAN mRNA 172665 193661 0.978405 - . ID=CGI_10011758; scaffold43686 WUBlastX DNA_Zator 185236 185982 126 - . . scaffold43686 GLEAN mRNA 172665 193661 0.978405 - . ID=CGI_10011758; scaffold1844 WUBlastX LINE_RTE-X 125630 125794 30 + . . scaffold1844 GLEAN mRNA 108283 134853 0.924542 + . ID=CGI_10006619; scaffold35822 WUBlastX LINE_RTE-BovB 23692 24537 636 + . . scaffold35822 GLEAN mRNA 19065 26700 1 - . ID=CGI_10001614; scaffold41372 WUBlastX LINE_L1-Tx1 69875 70150 20 - . . scaffold41372 GLEAN mRNA 67893 79286 0.261998 + . ID=CGI_10005012; scaffold1213 WUBlastX DNA_TcMar-Pogo 386626 388137 792 + . . scaffold1213 GLEAN mRNA 350181 406483 0.805895 + . ID=CGI_10027449; scaffold40836 WUBlastX LINE_RTE-X 84636 85307 389 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold1644 WUBlastX DNA_Academ 59661 60764 404 - . . scaffold1644 GLEAN mRNA 59083 88105 0.250771 - . ID=CGI_10004214; scaffold1066 WUBlastX LTR_Ngaro 177666 179297 817 - . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold38374 WUBlastX LTR_Gypsy 16404 17153 441 + . . scaffold38374 GLEAN mRNA 8302 17987 0.957619 + . ID=CGI_10002746; scaffold43116 WUBlastX LTR_Gypsy 103933 104070 78 - . . scaffold43116 GLEAN mRNA 94034 106356 0.999676 - . ID=CGI_10008812; scaffold406 WUBlastX LTR_Gypsy 69609 70073 47 - . . scaffold406 GLEAN mRNA 63105 78647 0.760341 - . ID=CGI_10023839; scaffold632 WUBlastX LINE_L1 512090 512128 21 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold38364 WUBlastX LTR_Gypsy 13620 14162 65 + . . scaffold38364 GLEAN mRNA 13434 14450 0.986568 + . ID=CGI_10002730; scaffold204 WUBlastX LINE_Penelope 842437 842715 58 + . . scaffold204 GLEAN mRNA 840254 857007 0.756652 + . ID=CGI_10026136; scaffold925 WUBlastX LINE_L1-Tx1 225354 225455 45 + . . scaffold925 GLEAN mRNA 224843 231445 0.810337 + . ID=CGI_10017420; scaffold1050 WUBlastX LINE_L2 115644 116192 63 + . . scaffold1050 GLEAN mRNA 110488 131637 0.740819 + . ID=CGI_10009172; scaffold775 WUBlastX DNA_Merlin 127917 128264 47 + . . scaffold775 GLEAN mRNA 127511 130349 0.997009 + . ID=CGI_10006094; scaffold547 WUBlastX LTR_Ngaro 429502 429603 24 + . . scaffold547 GLEAN mRNA 419498 445830 0.497938 - . ID=CGI_10018857; scaffold192 WUBlastX LTR_Gypsy 664845 665129 60 + . . scaffold192 GLEAN mRNA 655198 676504 0.999922 - . ID=CGI_10023723; scaffold1532 WUBlastX LINE_Penelope 957848 958207 37 + . . scaffold1532 GLEAN mRNA 956349 969868 0.999878 + . ID=CGI_10028276; scaffold1245 WUBlastX DNA_TcMar-Marin 104370 104831 22 - . . scaffold1245 GLEAN mRNA 102403 119670 0.989696 - . ID=CGI_10009226; scaffold39804 WUBlastX LINE_RTE-BovB 54071 54382 60 - . . scaffold39804 GLEAN mRNA 45401 55574 0.999999 - . ID=CGI_10003620; scaffold847 WUBlastX LTR_Gypsy 65237 65305 25 - . . scaffold847 GLEAN mRNA 61092 71360 0.999451 - . ID=CGI_10022265; scaffold39258 WUBlastX DNA_hAT-Tip100 22748 22903 90 - . . scaffold39258 GLEAN mRNA 21383 23695 0.999661 - . ID=CGI_10003263; scaffold1448 WUBlastX DNA_IS4EU 269216 269920 80 - . . scaffold1448 GLEAN mRNA 269171 271647 0.740287 - . ID=CGI_10011860; scaffold1179 WUBlastX DNA_P 1295122 1295256 58 + . . scaffold1179 GLEAN mRNA 1286843 1305972 0.887369 + . ID=CGI_10027419; scaffold1259 WUBlastX DNA_MuDR 15474 15635 42 - . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold1259 WUBlastX DNA_MuDR 15833 16078 55 - . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold1179 WUBlastX LTR_Gypsy-Cigr 23243 23497 57 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold474 WUBlastX LTR_Copia 184675 184746 24 - . . scaffold474 GLEAN mRNA 184448 184906 0.59015 - . ID=CGI_10007599; scaffold392 WUBlastX LTR_Gypsy-Cigr 35561 35860 92 - . . scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; scaffold35960 WUBlastX DNA_hAT-Tip100 9519 9713 86 + . . scaffold35960 GLEAN mRNA 415 14469 0.999984 - . ID=CGI_10001702; C31414 WUBlastX LTR_Gypsy 6219 6866 61 + . . C31414 GLEAN mRNA 5466 7672 0.561405 + . ID=CGI_10000746; scaffold37946 WUBlastX LTR_Gypsy 14050 14505 106 - . . scaffold37946 GLEAN mRNA 2025 20198 0.734311 + . ID=CGI_10002553; scaffold1036 WUBlastX LINE_I 235773 235814 20 - . . scaffold1036 GLEAN mRNA 228869 245204 0.994909 + . ID=CGI_10019957; scaffold1230 WUBlastX LINE_L1 63571 64017 72 + . . scaffold1230 GLEAN mRNA 56388 93654 0.514803 - . ID=CGI_10004423; scaffold1230 WUBlastX LINE_L1 63571 64017 72 + . . scaffold1230 GLEAN mRNA 61857 71757 0.544345 + . ID=CGI_10004424; scaffold660 WUBlastX DNA_hAT-Tip100 201436 201957 77 + . . scaffold660 GLEAN mRNA 201436 201984 0.999661 + . ID=CGI_10013753; scaffold456 WUBlastX LTR_Ngaro 138959 139087 38 + . . scaffold456 GLEAN mRNA 102025 155096 0.577611 + . ID=CGI_10006863; scaffold1672 WUBlastX LTR_Gypsy 77310 77585 31 + . . scaffold1672 GLEAN mRNA 76156 80299 1 - . ID=CGI_10004943; scaffold1672 WUBlastX LTR_Gypsy 77310 77585 31 + . . scaffold1672 GLEAN mRNA 57333 81461 0.999231 + . ID=CGI_10004942; scaffold126 WUBlastX DNA_IS4EU 252500 252625 29 - . . scaffold126 GLEAN mRNA 251015 257085 0.999956 + . ID=CGI_10019188; scaffold847 WUBlastX LTR_Gypsy 598031 598108 28 - . . scaffold847 GLEAN mRNA 588396 606136 0.840326 - . ID=CGI_10022283; scaffold1259 WUBlastX DNA_MuDR 16589 16795 22 - . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold42994 WUBlastX LINE_RTE-BovB 5441 5566 44 + . . scaffold42994 GLEAN mRNA 5441 10039 0.836758 + . ID=CGI_10008312; scaffold575 WUBlastX DNA_Sola 158464 158607 49 - . . scaffold575 GLEAN mRNA 145353 162107 0.486824 - . ID=CGI_10007002; scaffold575 WUBlastX DNA_Sola 159123 159185 25 - . . scaffold575 GLEAN mRNA 145353 162107 0.486824 - . ID=CGI_10007002; scaffold1219 WUBlastX LINE_L1-Tx1 870343 870828 30 - . . scaffold1219 GLEAN mRNA 868848 874682 0.999351 + . ID=CGI_10024304; scaffold479 WUBlastX LTR_Ngaro 421893 422201 115 + . . scaffold479 GLEAN mRNA 420249 425742 0.99319 + . ID=CGI_10015702; scaffold599 WUBlastX DNA_IS4EU 463931 464197 64 + . . scaffold599 GLEAN mRNA 453980 472237 0.999985 - . ID=CGI_10021725; scaffold599 WUBlastX DNA_IS4EU 463931 464197 64 + . . scaffold599 GLEAN mRNA 456252 477114 0.953927 + . ID=CGI_10021726; scaffold143 WUBlastX LINE_CR1-L2 215000 215515 59 + . . scaffold143 GLEAN mRNA 211939 221171 0.564856 - . ID=CGI_10010016; scaffold1097 WUBlastX LINE_RTE-X 796658 796750 41 + . . scaffold1097 GLEAN mRNA 796138 800546 1 + . ID=CGI_10024550; scaffold1097 WUBlastX LINE_RTE-X 796960 797088 51 + . . scaffold1097 GLEAN mRNA 796138 800546 1 + . ID=CGI_10024550; scaffold43818 WUBlastX LTR_Gypsy-Cigr 321446 322069 109 + . . scaffold43818 GLEAN mRNA 318880 322672 0.37766 + . ID=CGI_10012777; scaffold1241 WUBlastX LTR_Gypsy 158448 159257 85 - . . scaffold1241 GLEAN mRNA 158229 159365 0.555898 - . ID=CGI_10016428; scaffold767 WUBlastX LINE_L1-Tx1 280140 280430 38 + . . scaffold767 GLEAN mRNA 267592 288448 0.433091 + . ID=CGI_10014846; scaffold447 WUBlastX LINE_Rex-Babar 335418 335522 27 - . . scaffold447 GLEAN mRNA 332382 354643 0.998297 + . ID=CGI_10014233; scaffold1191 WUBlastX LTR_DIRS? 85005 85382 132 - . . scaffold1191 GLEAN mRNA 65394 88286 0.517666 - . ID=CGI_10005211; scaffold43134 WUBlastX DNA_IS4EU 211056 211280 45 + . . scaffold43134 GLEAN mRNA 205984 218530 0.990712 + . ID=CGI_10008898; scaffold597 WUBlastX LINE_L1-Tx1 35928 36509 119 - . . scaffold597 GLEAN mRNA 30096 40610 0.999676 + . ID=CGI_10004927; scaffold1813 WUBlastX LINE_RTE-X 113201 113461 27 - . . scaffold1813 GLEAN mRNA 106186 113865 0.957305 + . ID=CGI_10005994; scaffold266 WUBlastX LINE_RTE-X 245955 246347 84 - . . scaffold266 GLEAN mRNA 236877 257451 0.649405 - . ID=CGI_10013355; scaffold828 WUBlastX LINE_L1-Tx1 81866 82183 93 - . . scaffold828 GLEAN mRNA 78778 92221 0.986584 - . ID=CGI_10007365; scaffold756 WUBlastX LTR_Pao 179720 180355 683 - . . scaffold756 GLEAN mRNA 174962 194451 0.721563 + . ID=CGI_10016458; scaffold756 WUBlastX LTR_Pao 180333 180701 388 - . . scaffold756 GLEAN mRNA 174962 194451 0.721563 + . ID=CGI_10016458; scaffold42880 WUBlastX LTR_Ngaro 29244 29522 61 - . . scaffold42880 GLEAN mRNA 29055 29522 0.999999 - . ID=CGI_10007997; scaffold107 WUBlastX LINE_RTE-X 495753 495842 40 + . . scaffold107 GLEAN mRNA 482349 496880 0.436429 + . ID=CGI_10025056; scaffold107 WUBlastX LINE_RTE-X 496035 496829 47 + . . scaffold107 GLEAN mRNA 482349 496880 0.436429 + . ID=CGI_10025056; scaffold1347 WUBlastX LINE_RTE-X 141865 142209 57 + . . scaffold1347 GLEAN mRNA 133564 144148 0.49238 + . ID=CGI_10012974; scaffold712 WUBlastX LINE_R2-Hero 343404 344411 499 + . . scaffold712 GLEAN mRNA 336086 347992 0.995237 + . ID=CGI_10016485; scaffold1149 WUBlastX LINE_RTE-BovB 707622 708818 1036 - . . scaffold1149 GLEAN mRNA 706264 722133 0.605293 + . ID=CGI_10023478; scaffold1087 WUBlastX LTR_Gypsy 13249 14553 696 + . . scaffold1087 GLEAN mRNA 1458 16224 0.544547 + . ID=CGI_10001183; scaffold1670 WUBlastX LTR_Ngaro 317163 317936 112 - . . scaffold1670 GLEAN mRNA 315570 334176 0.999676 + . ID=CGI_10017618; scaffold425 WUBlastX DNA_IS4EU 138970 139623 114 - . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold695 WUBlastX LINE_L1-Tx1 90382 90495 40 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold1480 WUBlastX LINE_R2 157083 157646 288 - . . scaffold1480 GLEAN mRNA 145751 160551 0.693127 - . ID=CGI_10008638; scaffold1480 WUBlastX LINE_R2 159699 160028 144 - . . scaffold1480 GLEAN mRNA 145751 160551 0.693127 - . ID=CGI_10008638; scaffold1179 WUBlastX DNA_Harbinger 18212 18355 69 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; C34110 WUBlastX DNA_IS4EU 13655 14392 134 - . . C34110 GLEAN mRNA 2583 15463 0.431065 - . ID=CGI_10001212; scaffold579 WUBlastX LINE_Penelope 216759 217058 155 - . . scaffold579 GLEAN mRNA 193436 221323 0.863149 + . ID=CGI_10011264; scaffold31 WUBlastX LINE_RTE-X 171763 172131 117 - . . scaffold31 GLEAN mRNA 167305 183497 0.965717 + . ID=CGI_10013560; scaffold38510 WUBlastX DNA_Sola 30638 30829 46 + . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold950 WUBlastX DNA_TcMar-Tc2 107609 107998 129 - . . scaffold950 GLEAN mRNA 86388 112962 1 - . ID=CGI_10022920; scaffold1561 WUBlastX LINE_RTE-X 16436 17650 490 - . . scaffold1561 GLEAN mRNA 6278 19988 0.999234 + . ID=CGI_10005689; scaffold1561 WUBlastX LINE_RTE-X 17656 18228 367 - . . scaffold1561 GLEAN mRNA 6278 19988 0.999234 + . ID=CGI_10005689; scaffold1698 WUBlastX LINE_L2 125170 125613 102 + . . scaffold1698 GLEAN mRNA 115530 127809 0.999999 + . ID=CGI_10019370; scaffold117 WUBlastX DNA_Harbinger 37174 37359 70 - . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold1360 WUBlastX LINE_RTE-BovB 40846 41184 44 - . . scaffold1360 GLEAN mRNA 19050 50648 0.715639 + . ID=CGI_10022624; scaffold1009 WUBlastX LTR_Copia 167708 170077 1469 - . . scaffold1009 GLEAN mRNA 163164 171986 0.959931 - . ID=CGI_10028721; scaffold1362 WUBlastX LTR_Gypsy-Cigr 201032 203992 1285 + . . scaffold1362 GLEAN mRNA 196782 238172 0.653945 - . ID=CGI_10023934; scaffold394 WUBlastX DNA_Kolobok 292104 292223 20 + . . scaffold394 GLEAN mRNA 286632 296945 0.296609 + . ID=CGI_10022077; scaffold1442 WUBlastX LINE_L1-Tx1 19608 19829 74 - . . scaffold1442 GLEAN mRNA 5012 20569 0.987275 - . ID=CGI_10003583; scaffold156 WUBlastX LTR_Gypsy 1100449 1101780 536 - . . scaffold156 GLEAN mRNA 1094153 1105194 0.982183 - . ID=CGI_10026543; scaffold1599 WUBlastX LTR_Gypsy 678194 679579 939 - . . scaffold1599 GLEAN mRNA 676136 688286 0.501311 - . ID=CGI_10027155; scaffold219 WUBlastX LINE_L1 131962 132126 28 + . . scaffold219 GLEAN mRNA 124764 139591 0.613723 - . ID=CGI_10016614; scaffold1009 WUBlastX LTR_Copia 165270 166955 204 - . . scaffold1009 GLEAN mRNA 163164 171986 0.959931 - . ID=CGI_10028721; scaffold43818 WUBlastX LINE_RTE-X 329055 329189 39 + . . scaffold43818 GLEAN mRNA 325023 332374 0.596002 + . ID=CGI_10012778; scaffold39900 WUBlastX DNA_Maverick 66223 66678 173 + . . scaffold39900 GLEAN mRNA 63800 72994 0.885101 + . ID=CGI_10003685; scaffold772 WUBlastX DNA_TcMar-Tc1 174755 175465 201 - . . scaffold772 GLEAN mRNA 173305 179319 1 + . ID=CGI_10016584; scaffold38272 WUBlastX LINE_L1-Tx1 38746 38937 28 + . . scaffold38272 GLEAN mRNA 12040 52169 0.605388 + . ID=CGI_10002702; scaffold272 WUBlastX LINE_L2 45847 46089 72 + . . scaffold272 GLEAN mRNA 32744 62954 0.999882 + . ID=CGI_10003057; scaffold1546 WUBlastX DNA_Kolobok 183507 183692 26 - . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold257 WUBlastX LTR_DIRS 1607767 1608075 77 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold20 WUBlastX DNA_TcMar-Fot1 4972 5505 144 - . . scaffold20 GLEAN mRNA 478 8308 1 - . ID=CGI_10023555; C34256 WUBlastX DNA_Kolobok 11007 11147 37 + . . C34256 GLEAN mRNA 10416 11159 1 + . ID=CGI_10001258; C34256 WUBlastX DNA_Kolobok 10014 10295 130 + . . C34256 GLEAN mRNA 8451 10352 0.999999 + . ID=CGI_10001257; scaffold6 WUBlastX LTR_Pao 129672 130253 467 + . . scaffold6 GLEAN mRNA 120164 144778 0.978215 - . ID=CGI_10022297; scaffold1583 WUBlastX LINE_RTE-X 330184 330501 126 + . . scaffold1583 GLEAN mRNA 329253 340870 0.998703 - . ID=CGI_10025825; scaffold1862 WUBlastX DNA_IS4EU 657803 658153 56 + . . scaffold1862 GLEAN mRNA 655247 661635 1 - . ID=CGI_10021923; scaffold1180 WUBlastX LTR_DIRS 24610 24945 171 + . . scaffold1180 GLEAN mRNA 13672 45655 0.485788 + . ID=CGI_10005979; scaffold896 WUBlastX LINE_RTE-X 438052 438321 137 - . . scaffold896 GLEAN mRNA 429849 443777 0.584747 + . ID=CGI_10022849; scaffold896 WUBlastX LINE_RTE-X 438052 438321 137 - . . scaffold896 GLEAN mRNA 434715 450263 0.551142 - . ID=CGI_10022850; scaffold42210 WUBlastX LINE_L1-Tx1 100191 100421 72 + . . scaffold42210 GLEAN mRNA 98005 111760 0.591926 + . ID=CGI_10006389; scaffold1583 WUBlastX LINE_RTE-X 323902 324345 154 - . . scaffold1583 GLEAN mRNA 302473 325169 0.82008 - . ID=CGI_10025823; scaffold365 WUBlastX LTR_Pao 251995 252378 29 + . . scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; scaffold406 WUBlastX DNA_MuDR 413829 414755 307 - . . scaffold406 GLEAN mRNA 402781 436007 0.999901 + . ID=CGI_10023847; scaffold578 WUBlastX DNA_TcMar-Tc1 340584 341171 264 + . . scaffold578 GLEAN mRNA 339528 348737 0.999218 - . ID=CGI_10015129; scaffold1670 WUBlastX LINE_CR1 398726 399004 219 + . . scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; scaffold33980 WUBlastX DNA_hAT-Tip100 2800 2979 47 + . . scaffold33980 GLEAN mRNA 2151 15835 0.664854 + . ID=CGI_10001168; scaffold38152 WUBlastX DNA_hAT-hATw 6737 8071 152 - . . scaffold38152 GLEAN mRNA 1846 12564 0.999993 - . ID=CGI_10002678; scaffold1503 WUBlastX DNA_TcMar-Tc1 56379 56981 303 - . . scaffold1503 GLEAN mRNA 55967 67698 1 + . ID=CGI_10009528; scaffold40560 WUBlastX DNA_Harbinger 56261 56407 45 + . . scaffold40560 GLEAN mRNA 52941 60910 0.709835 - . ID=CGI_10004230; scaffold407 WUBlastX LINE_L2 14561 14896 197 + . . scaffold407 GLEAN mRNA 13072 17204 0.999998 + . ID=CGI_10002626; scaffold407 WUBlastX LINE_L2 14896 15492 214 + . . scaffold407 GLEAN mRNA 13072 17204 0.999998 + . ID=CGI_10002626; scaffold1507 WUBlastX LTR_Ngaro 13353 13787 108 + . . scaffold1507 GLEAN mRNA 8112 20039 0.965106 - . ID=CGI_10001768; scaffold43500 WUBlastX LINE_RTE-X 70732 71493 213 - . . scaffold43500 GLEAN mRNA 67492 74179 0.830032 - . ID=CGI_10010614; scaffold40560 WUBlastX DNA_Harbinger 55649 55960 86 + . . scaffold40560 GLEAN mRNA 52941 60910 0.709835 - . ID=CGI_10004230; scaffold3 WUBlastX LTR_Ngaro 1316434 1316787 143 - . . scaffold3 GLEAN mRNA 1314645 1318382 0.999612 - . ID=CGI_10027337; scaffold3 WUBlastX LTR_Ngaro 1316759 1317388 283 - . . scaffold3 GLEAN mRNA 1314645 1318382 0.999612 - . ID=CGI_10027337; scaffold210 WUBlastX LTR_Ngaro 225226 225414 28 + . . scaffold210 GLEAN mRNA 223042 231005 0.552757 + . ID=CGI_10015889; scaffold40560 WUBlastX DNA_Harbinger 56407 56529 63 + . . scaffold40560 GLEAN mRNA 52941 60910 0.709835 - . ID=CGI_10004230; scaffold40560 WUBlastX DNA_Harbinger 57072 57326 190 + . . scaffold40560 GLEAN mRNA 52941 60910 0.709835 - . ID=CGI_10004230; scaffold40560 WUBlastX DNA_Harbinger 58070 58294 47 + . . scaffold40560 GLEAN mRNA 52941 60910 0.709835 - . ID=CGI_10004230; scaffold578 WUBlastX DNA_Kolobok 23013 23216 90 - . . scaffold578 GLEAN mRNA 19761 26602 0.244564 - . ID=CGI_10015109; scaffold578 WUBlastX DNA_Kolobok 23359 23532 88 - . . scaffold578 GLEAN mRNA 19761 26602 0.244564 - . ID=CGI_10015109; scaffold578 WUBlastX DNA_Kolobok 24000 24188 78 - . . scaffold578 GLEAN mRNA 19761 26602 0.244564 - . ID=CGI_10015109; scaffold578 WUBlastX DNA_Kolobok 24329 24862 210 - . . scaffold578 GLEAN mRNA 19761 26602 0.244564 - . ID=CGI_10015109; scaffold1097 WUBlastX LTR_Gypsy 860831 861721 293 + . . scaffold1097 GLEAN mRNA 848149 863853 0.999116 + . ID=CGI_10024555; scaffold1213 WUBlastX LINE_L1-Tx1 416599 417627 343 - . . scaffold1213 GLEAN mRNA 408300 423198 0.400191 - . ID=CGI_10027450; scaffold43500 WUBlastX LINE_RTE-X 69625 70383 169 - . . scaffold43500 GLEAN mRNA 67492 74179 0.830032 - . ID=CGI_10010614; scaffold723 WUBlastX LINE_RTE-BovB 398718 398873 56 + . . scaffold723 GLEAN mRNA 395743 409753 0.999949 - . ID=CGI_10015275; scaffold723 WUBlastX LINE_RTE-BovB 398878 399879 440 + . . scaffold723 GLEAN mRNA 395743 409753 0.999949 - . ID=CGI_10015275; scaffold286 WUBlastX LINE_RTE-X 105502 105867 63 + . . scaffold286 GLEAN mRNA 101905 133971 0.984811 - . ID=CGI_10015959; scaffold1101 WUBlastX LINE_RTE-X 151166 151576 122 - . . scaffold1101 GLEAN mRNA 141921 154245 0.479315 + . ID=CGI_10023014; scaffold858 WUBlastX LINE_L2 15398 16354 569 - . . scaffold858 GLEAN mRNA 10847 22761 0.93008 - . ID=CGI_10004935; scaffold1767 WUBlastX LINE_L1-Tx1 93699 95615 458 + . . scaffold1767 GLEAN mRNA 93032 98652 0.99967 + . ID=CGI_10016907; scaffold1616 WUBlastX LTR_DIRS 91504 91638 57 + . . scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; scaffold1101 WUBlastX LINE_RTE-X 148502 149179 223 - . . scaffold1101 GLEAN mRNA 141921 154245 0.479315 + . ID=CGI_10023014; scaffold1101 WUBlastX LINE_RTE-X 149529 150512 257 - . . scaffold1101 GLEAN mRNA 141921 154245 0.479315 + . ID=CGI_10023014; scaffold1021 WUBlastX RC_Helitron 695721 696686 433 + . . scaffold1021 GLEAN mRNA 692304 699453 0.992587 + . ID=CGI_10022506; scaffold22 WUBlastX LTR_Pao 181548 182369 24 + . . scaffold22 GLEAN mRNA 157108 183005 0.71876 + . ID=CGI_10028831; scaffold221 WUBlastX LTR_Copia 82988 83629 39 + . . scaffold221 GLEAN mRNA 82988 83629 0.999661 + . ID=CGI_10008345; scaffold98 WUBlastX LINE_L2 39153 39593 34 - . . scaffold98 GLEAN mRNA 38499 46848 0.998032 - . ID=CGI_10012780; scaffold1610 WUBlastX DNA_Kolobok-IS4 229664 229867 44 + . . scaffold1610 GLEAN mRNA 228132 243894 0.862915 + . ID=CGI_10016503; scaffold1687 WUBlastX DNA_IS4EU 179567 179776 46 - . . scaffold1687 GLEAN mRNA 175921 180780 0.898283 + . ID=CGI_10008394; scaffold192 WUBlastX LTR_Gypsy 665028 665150 86 + . . scaffold192 GLEAN mRNA 655198 676504 0.999922 - . ID=CGI_10023723; scaffold43280 WUBlastX LTR_Gypsy 170840 170974 67 + . . scaffold43280 GLEAN mRNA 132335 177835 0.651964 - . ID=CGI_10009657; scaffold43182 WUBlastX LTR_Gypsy 166266 166469 41 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold1785 WUBlastX LINE_L1-Tx1 415031 415420 27 + . . scaffold1785 GLEAN mRNA 409073 415432 1 + . ID=CGI_10024384; scaffold43726 WUBlastX LINE_RTE-X 268426 268956 22 + . . scaffold43726 GLEAN mRNA 249575 275240 0.78038 + . ID=CGI_10012028; scaffold156 WUBlastX LINE_RTE-X 328012 328179 51 - . . scaffold156 GLEAN mRNA 326940 337481 0.63561 + . ID=CGI_10026496; scaffold290 WUBlastX LINE_RTE-X 188569 188658 24 + . . scaffold290 GLEAN mRNA 184166 208505 0.688957 - . ID=CGI_10018539; scaffold1004 WUBlastX LINE_RTE-RTE 485952 486098 46 - . . scaffold1004 GLEAN mRNA 463295 491476 0.997732 - . ID=CGI_10020781; scaffold42274 WUBlastX LINE_RTE-BovB 62498 62626 38 - . . scaffold42274 GLEAN mRNA 45055 72181 0.998895 + . ID=CGI_10006512; scaffold298 WUBlastX LTR_Gypsy 281042 281422 33 - . . scaffold298 GLEAN mRNA 275559 284249 0.999682 - . ID=CGI_10018823; scaffold42392 WUBlastX LINE_L2 114378 114668 35 - . . scaffold42392 GLEAN mRNA 99459 124879 0.476918 + . ID=CGI_10006785; scaffold1333 WUBlastX LTR_DIRS 54214 54450 56 - . . scaffold1333 GLEAN mRNA 51293 57849 0.723221 - . ID=CGI_10009674; scaffold113 WUBlastX DNA_hAT-Tag1 590382 590807 70 - . . scaffold113 GLEAN mRNA 582017 590807 0.980826 - . ID=CGI_10021294; scaffold13 WUBlastX DNA_IS4EU 192397 193050 60 + . . scaffold13 GLEAN mRNA 172056 194004 0.998501 + . ID=CGI_10013207; scaffold39120 WUBlastX DNA_IS4EU 47978 48142 58 - . . scaffold39120 GLEAN mRNA 36514 50111 0.858496 + . ID=CGI_10003188; scaffold1874 WUBlastX LINE_L1 296406 296900 24 + . . scaffold1874 GLEAN mRNA 288511 297764 0.52871 + . ID=CGI_10011933; scaffold269 WUBlastX LINE_CR1 197738 198148 81 - . . scaffold269 GLEAN mRNA 192453 200699 0.999993 + . ID=CGI_10018996; scaffold406 WUBlastX DNA_TcMar-ISRm1 664369 664629 55 - . . scaffold406 GLEAN mRNA 664336 664629 0.776794 - . ID=CGI_10023865; scaffold1651 WUBlastX DNA_TcMar-Tc1 66802 66867 22 - . . scaffold1651 GLEAN mRNA 64291 72997 0.999027 + . ID=CGI_10007888; scaffold44008 WUBlastX DNA_hAT-Tip100 354618 354848 59 + . . scaffold44008 GLEAN mRNA 353787 363820 0.499838 + . ID=CGI_10015300; scaffold583 WUBlastX LINE_CR1-L2 388460 388600 46 - . . scaffold583 GLEAN mRNA 365612 390201 0.692695 - . ID=CGI_10023621; scaffold760 WUBlastX LTR_Gypsy 801348 801743 93 - . . scaffold760 GLEAN mRNA 798582 806606 0.999169 - . ID=CGI_10024013; scaffold31 WUBlastX LINE_L1 15375 16133 40 - . . scaffold31 GLEAN mRNA 7584 16133 0.792688 - . ID=CGI_10013551; scaffold149 WUBlastX LINE_Penelope 977738 977809 44 + . . scaffold149 GLEAN mRNA 977738 985587 0.998126 + . ID=CGI_10025334; scaffold336 WUBlastX LINE_L2 216227 216289 29 - . . scaffold336 GLEAN mRNA 208327 217851 1 - . ID=CGI_10012569; scaffold43026 WUBlastX LINE_RTE-BovB 143678 143830 94 - . . scaffold43026 GLEAN mRNA 135566 144191 0.699088 + . ID=CGI_10008550; scaffold536 WUBlastX LINE_RTE-X 86298 86546 93 - . . scaffold536 GLEAN mRNA 68482 93233 0.999348 + . ID=CGI_10006670; scaffold1773 WUBlastX LINE_Penelope 115331 115633 39 + . . scaffold1773 GLEAN mRNA 113483 121773 0.995285 + . ID=CGI_10011228; scaffold502 WUBlastX LINE_L1-Tx1 73582 73830 62 - . . scaffold502 GLEAN mRNA 66995 88059 0.642831 + . ID=CGI_10024313; scaffold1749 WUBlastX LTR_DIRS 93875 94213 115 - . . scaffold1749 GLEAN mRNA 92161 94954 0.876214 - . ID=CGI_10008254; scaffold42570 WUBlastX LINE_CR1 16551 16760 94 + . . scaffold42570 GLEAN mRNA 8098 32477 0.949085 + . ID=CGI_10007233; scaffold1009 WUBlastX LINE_RTE-X 1225840 1226364 29 - . . scaffold1009 GLEAN mRNA 1197147 1238817 0.350484 + . ID=CGI_10028788; scaffold43054 WUBlastX LINE_RTE-X 70823 71251 40 - . . scaffold43054 GLEAN mRNA 69561 76829 0.990615 + . ID=CGI_10008597; scaffold43130 WUBlastX LINE_RTE-X 122180 122704 27 + . . scaffold43130 GLEAN mRNA 99127 140133 0.992485 - . ID=CGI_10008963; scaffold43726 WUBlastX LINE_RTE-X 211625 211867 85 - . . scaffold43726 GLEAN mRNA 209540 218835 0.998187 - . ID=CGI_10012026; scaffold847 WUBlastX LTR_Gypsy 597713 598096 128 - . . scaffold847 GLEAN mRNA 588396 606136 0.840326 - . ID=CGI_10022283; scaffold509 WUBlastX LINE_RTE-BovB 206501 206650 44 - . . scaffold509 GLEAN mRNA 180574 211213 0.998586 - . ID=CGI_10018644; scaffold31 WUBlastX LINE_L1-Tx1 14636 14737 32 - . . scaffold31 GLEAN mRNA 7584 16133 0.792688 - . ID=CGI_10013551; scaffold40560 WUBlastX DNA_Harbinger 59483 59593 67 - . . scaffold40560 GLEAN mRNA 52941 60910 0.709835 - . ID=CGI_10004230; scaffold40560 WUBlastX DNA_Harbinger 60566 60706 58 - . . scaffold40560 GLEAN mRNA 52941 60910 0.709835 - . ID=CGI_10004230; scaffold630 WUBlastX LINE_L1 352795 353433 89 - . . scaffold630 GLEAN mRNA 340806 353631 0.861539 - . ID=CGI_10018332; scaffold685 WUBlastX DNA_Kolobok 84306 84449 73 + . . scaffold685 GLEAN mRNA 83408 84482 1 + . ID=CGI_10004493; scaffold1014 WUBlastX LINE_L2 593685 594149 89 - . . scaffold1014 GLEAN mRNA 561207 594372 0.621641 - . ID=CGI_10020275; scaffold773 WUBlastX LINE_L2 150882 150950 25 + . . scaffold773 GLEAN mRNA 136190 154303 0.840493 - . ID=CGI_10011344; scaffold773 WUBlastX LINE_L2 150964 151032 29 + . . scaffold773 GLEAN mRNA 136190 154303 0.840493 - . ID=CGI_10011344; scaffold193 WUBlastX LTR_Gypsy-Cigr 248779 248913 106 - . . scaffold193 GLEAN mRNA 245779 268914 0.906792 - . ID=CGI_10015232; scaffold206 WUBlastX DNA_En-Spm 128162 128464 78 - . . scaffold206 GLEAN mRNA 123903 131741 0.999975 - . ID=CGI_10011374; scaffold398 WUBlastX LINE_RTE-X 43468 43722 106 - . . scaffold398 GLEAN mRNA 36290 48236 0.999674 + . ID=CGI_10004361; scaffold1865 WUBlastX LINE_RTE-X 293572 293640 32 + . . scaffold1865 GLEAN mRNA 265949 318343 0.640148 - . ID=CGI_10013547; scaffold817 WUBlastX LTR_Copia 54990 56162 120 - . . scaffold817 GLEAN mRNA 54160 69177 0.983542 - . ID=CGI_10008657; scaffold1561 WUBlastX LINE_CR1 100500 100547 22 - . . scaffold1561 GLEAN mRNA 90687 107153 0.999946 - . ID=CGI_10005694; scaffold962 WUBlastX LINE_CR1-L2 1088080 1088187 57 + . . scaffold962 GLEAN mRNA 1078349 1089726 1 - . ID=CGI_10027683; scaffold680 WUBlastX LINE_Penelope 36705 36977 34 + . . scaffold680 GLEAN mRNA 28858 40321 0.544852 - . ID=CGI_10003337; scaffold1670 WUBlastX LINE_R2-Hero 35467 35808 135 - . . scaffold1670 GLEAN mRNA 20416 44429 0.542324 + . ID=CGI_10017595; scaffold1670 WUBlastX LINE_R2-Hero 36071 36199 34 - . . scaffold1670 GLEAN mRNA 20416 44429 0.542324 + . ID=CGI_10017595; scaffold210 WUBlastX LTR_Ngaro 223521 224009 88 + . . scaffold210 GLEAN mRNA 223042 231005 0.552757 + . ID=CGI_10015889; scaffold1445 WUBlastX LTR_Gypsy 215486 215776 43 - . . scaffold1445 GLEAN mRNA 215438 231778 0.644744 - . ID=CGI_10010374; scaffold42226 WUBlastX DNA_Kolobok 119075 119317 139 + . . scaffold42226 GLEAN mRNA 107394 126585 0.842903 + . ID=CGI_10006364; scaffold42096 WUBlastX LINE_L2 109040 109399 308 + . . scaffold42096 GLEAN mRNA 96755 112781 0.947295 - . ID=CGI_10006165; scaffold42096 WUBlastX LINE_L2 109040 109399 308 + . . scaffold42096 GLEAN mRNA 106698 118966 0.999659 + . ID=CGI_10006166; scaffold42096 WUBlastX LINE_L2 109431 109763 245 + . . scaffold42096 GLEAN mRNA 96755 112781 0.947295 - . ID=CGI_10006165; scaffold42096 WUBlastX LINE_L2 109431 109763 245 + . . scaffold42096 GLEAN mRNA 106698 118966 0.999659 + . ID=CGI_10006166; scaffold42096 WUBlastX LINE_L2 109765 110340 336 + . . scaffold42096 GLEAN mRNA 96755 112781 0.947295 - . ID=CGI_10006165; scaffold42096 WUBlastX LINE_L2 109765 110340 336 + . . scaffold42096 GLEAN mRNA 106698 118966 0.999659 + . ID=CGI_10006166; scaffold42096 WUBlastX LINE_L2 110328 110705 94 + . . scaffold42096 GLEAN mRNA 96755 112781 0.947295 - . ID=CGI_10006165; scaffold42096 WUBlastX LINE_L2 110328 110705 94 + . . scaffold42096 GLEAN mRNA 106698 118966 0.999659 + . ID=CGI_10006166; scaffold313 WUBlastX DNA_Crypton 758555 759139 123 + . . scaffold313 GLEAN mRNA 734660 773846 0.452737 + . ID=CGI_10026622; scaffold1219 WUBlastX LINE_RTE-X 581388 581936 69 - . . scaffold1219 GLEAN mRNA 568258 618995 0.744896 - . ID=CGI_10024286; scaffold602 WUBlastX LINE_RTE-X 41480 41851 159 - . . scaffold602 GLEAN mRNA 13092 44157 0.909253 + . ID=CGI_10023171; scaffold756 WUBlastX LINE_L2 454387 455967 936 - . . scaffold756 GLEAN mRNA 435099 464068 0.998247 - . ID=CGI_10016467; scaffold160 WUBlastX LTR_Pao 320309 320683 107 - . . scaffold160 GLEAN mRNA 319475 320748 0.628364 - . ID=CGI_10020588; scaffold241 WUBlastX LTR_Pao 84952 86841 634 + . . scaffold241 GLEAN mRNA 81964 102317 0.534439 + . ID=CGI_10025091; scaffold280 WUBlastX LINE_L2 581977 584439 1203 - . . scaffold280 GLEAN mRNA 579437 592170 0.977964 - . ID=CGI_10024596; scaffold1774 WUBlastX DNA_Kolobok 49875 50021 32 + . . scaffold1774 GLEAN mRNA 36391 50061 0.563353 + . ID=CGI_10006376; C34856 WUBlastX LINE_L1-Tx1 6488 7117 80 - . . C34856 GLEAN mRNA 131 10544 0.998639 + . ID=CGI_10001362; scaffold242 WUBlastX LTR_Pao 78145 78513 237 + . . scaffold242 GLEAN mRNA 75832 84666 0.771995 + . ID=CGI_10007083; scaffold113 WUBlastX DNA_MuDR 588750 588962 99 - . . scaffold113 GLEAN mRNA 582017 590807 0.980826 - . ID=CGI_10021294; scaffold226 WUBlastX LINE_RTE-X 1052354 1052758 92 - . . scaffold226 GLEAN mRNA 1050620 1061522 0.99513 - . ID=CGI_10025399; scaffold773 WUBlastX LTR_Gypsy 267198 267527 27 + . . scaffold773 GLEAN mRNA 235107 267865 0.138953 - . ID=CGI_10011348; scaffold469 WUBlastX LTR_Pao 624712 625515 609 + . . scaffold469 GLEAN mRNA 620008 639653 0.99956 + . ID=CGI_10024690; scaffold85 WUBlastX LTR_Gypsy 634956 635927 187 - . . scaffold85 GLEAN mRNA 611975 636254 1 - . ID=CGI_10020719; scaffold578 WUBlastX LINE_RTE-X 357002 357340 130 + . . scaffold578 GLEAN mRNA 348664 361929 0.458006 + . ID=CGI_10015130; scaffold1149 WUBlastX LINE_RTE-X 164943 165398 83 + . . scaffold1149 GLEAN mRNA 149088 177869 0.31262 + . ID=CGI_10023454; scaffold43932 WUBlastX DNA_Crypton 187304 188233 225 + . . scaffold43932 GLEAN mRNA 184217 200506 0.993526 + . ID=CGI_10014122; scaffold801 WUBlastX LINE_RTE-X 273752 273856 49 - . . scaffold801 GLEAN mRNA 264907 277016 0.581073 - . ID=CGI_10024082; scaffold40916 WUBlastX LINE_RTE-X 68217 68879 173 - . . scaffold40916 GLEAN mRNA 64388 73182 0.996236 - . ID=CGI_10004574; scaffold334 WUBlastX DNA_hAT 318798 319454 207 + . . scaffold334 GLEAN mRNA 316484 320486 0.508125 + . ID=CGI_10025930; scaffold334 WUBlastX DNA_hAT 319707 320102 32 + . . scaffold334 GLEAN mRNA 316484 320486 0.508125 + . ID=CGI_10025930; scaffold145 WUBlastX DNA_TcMar-Fot1 649129 649461 66 + . . scaffold145 GLEAN mRNA 640130 678599 0.569648 - . ID=CGI_10026560; scaffold1476 WUBlastX LINE_RTE-X 175116 175187 23 - . . scaffold1476 GLEAN mRNA 169615 179488 0.862141 + . ID=CGI_10009826; scaffold557 WUBlastX DNA_Maverick 523012 523521 120 - . . scaffold557 GLEAN mRNA 517497 527707 0.973204 - . ID=CGI_10017992; scaffold43538 WUBlastX LINE_CR1 155431 155928 183 + . . scaffold43538 GLEAN mRNA 151937 158307 1 - . ID=CGI_10010823; scaffold365 WUBlastX DNA_Kolobok 294610 294786 47 + . . scaffold365 GLEAN mRNA 290837 296028 1 + . ID=CGI_10022726; scaffold38510 WUBlastX DNA_Sola 29367 29462 24 + . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold35446 WUBlastX LTR_Gypsy 17885 18118 76 - . . scaffold35446 GLEAN mRNA 11417 21109 0.682042 + . ID=CGI_10001510; scaffold35446 WUBlastX LTR_Gypsy 18228 18668 266 - . . scaffold35446 GLEAN mRNA 11417 21109 0.682042 + . ID=CGI_10001510; scaffold247 WUBlastX LINE_RTE-BovB 203560 203664 32 - . . scaffold247 GLEAN mRNA 197989 208519 0.419557 + . ID=CGI_10018593; scaffold172 WUBlastX DNA_Crypton 9327 9908 174 + . . scaffold172 GLEAN mRNA 5002 17897 0.999274 - . ID=CGI_10013508; scaffold172 WUBlastX DNA_Crypton 10194 10568 52 + . . scaffold172 GLEAN mRNA 5002 17897 0.999274 - . ID=CGI_10013508; C35042 WUBlastX LINE_RTE-X 12693 13556 206 + . . C35042 GLEAN mRNA 1730 15534 0.391528 + . ID=CGI_10001403; scaffold42584 WUBlastX LTR_DIRS 72799 73317 125 + . . scaffold42584 GLEAN mRNA 72528 80539 0.592742 + . ID=CGI_10007308; scaffold42584 WUBlastX LTR_DIRS 73436 73783 172 + . . scaffold42584 GLEAN mRNA 72528 80539 0.592742 + . ID=CGI_10007308; scaffold35986 WUBlastX LTR_DIRS 13627 13716 31 - . . scaffold35986 GLEAN mRNA 7135 18106 0.651135 + . ID=CGI_10001706; scaffold35986 WUBlastX LTR_DIRS 14383 14598 42 - . . scaffold35986 GLEAN mRNA 7135 18106 0.651135 + . ID=CGI_10001706; scaffold35986 WUBlastX LTR_DIRS 14583 15041 104 - . . scaffold35986 GLEAN mRNA 7135 18106 0.651135 + . ID=CGI_10001706; scaffold35986 WUBlastX LTR_DIRS 15978 16415 57 - . . scaffold35986 GLEAN mRNA 7135 18106 0.651135 + . ID=CGI_10001706; scaffold1067 WUBlastX DNA_Sola 101971 102387 86 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold413 WUBlastX LINE_L1-Tx1 11815 12069 120 - . . scaffold413 GLEAN mRNA 9716 19114 0.940957 - . ID=CGI_10022791; scaffold447 WUBlastX LINE_RTE-BovB 336177 336248 22 - . . scaffold447 GLEAN mRNA 332382 354643 0.998297 + . ID=CGI_10014233; scaffold378 WUBlastX DNA_Maverick 255434 255988 348 - . . scaffold378 GLEAN mRNA 247048 256613 0.78919 - . ID=CGI_10017643; scaffold1750 WUBlastX DNA_Harbinger 680097 680465 160 + . . scaffold1750 GLEAN mRNA 679453 687752 0.873959 - . ID=CGI_10021501; scaffold1750 WUBlastX DNA_Harbinger 681127 681240 116 + . . scaffold1750 GLEAN mRNA 679453 687752 0.873959 - . ID=CGI_10021501; scaffold1750 WUBlastX DNA_Harbinger 682032 682157 83 + . . scaffold1750 GLEAN mRNA 679453 687752 0.873959 - . ID=CGI_10021501; scaffold305 WUBlastX LINE_L1 141519 141689 22 + . . scaffold305 GLEAN mRNA 133464 157357 0.544675 - . ID=CGI_10019118; scaffold40928 WUBlastX LINE_CR1 40189 40599 230 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold1397 WUBlastX LTR_Ngaro 24890 25267 169 + . . scaffold1397 GLEAN mRNA 22041 34038 0.684002 - . ID=CGI_10017113; scaffold406 WUBlastX LTR_Gypsy 134378 134572 120 + . . scaffold406 GLEAN mRNA 128241 151323 0.854188 - . ID=CGI_10023840; scaffold230 WUBlastX DNA_hAT-Tip100 129697 129885 44 - . . scaffold230 GLEAN mRNA 126666 144461 0.534748 - . ID=CGI_10011251; scaffold230 WUBlastX DNA_hAT-Tip100 130283 131179 267 - . . scaffold230 GLEAN mRNA 126666 144461 0.534748 - . ID=CGI_10011251; scaffold588 WUBlastX DNA_Harbinger 135001 135852 440 + . . scaffold588 GLEAN mRNA 132834 155339 0.82921 + . ID=CGI_10016211; scaffold36862 WUBlastX LTR_DIRS 37142 37768 113 + . . scaffold36862 GLEAN mRNA 37040 37771 1 + . ID=CGI_10002162; scaffold36862 WUBlastX LTR_DIRS 37722 37771 415 + . . scaffold36862 GLEAN mRNA 37040 37771 1 + . ID=CGI_10002162; scaffold43696 WUBlastX LTR_DIRS 2874 3752 629 + . . scaffold43696 GLEAN mRNA 2631 16978 0.0834374 + . ID=CGI_10011797; scaffold1024 WUBlastX DNA_PiggyBac 1067771 1068895 612 - . . scaffold1024 GLEAN mRNA 1067411 1070428 0.977799 - . ID=CGI_10028562; scaffold1889 WUBlastX DNA_Academ 179864 180210 617 + . . scaffold1889 GLEAN mRNA 168717 180210 0.977984 - . ID=CGI_10019607; scaffold610 WUBlastX LTR_Gypsy-Cigr 567158 568204 570 + . . scaffold610 GLEAN mRNA 561259 570035 0.686247 - . ID=CGI_10021130; scaffold1705 WUBlastX LTR_Gypsy-Cigr 96786 98054 712 + . . scaffold1705 GLEAN mRNA 68885 100114 0.343232 + . ID=CGI_10007468; scaffold143 WUBlastX LTR_Gypsy 19644 20459 147 - . . scaffold143 GLEAN mRNA 16958 23785 0.985197 + . ID=CGI_10010006; scaffold1679 WUBlastX LTR_Gypsy 28792 32187 652 - . . scaffold1679 GLEAN mRNA 27427 41298 0.999999 - . ID=CGI_10002338; scaffold1281 WUBlastX LTR_DIRS 7932 8060 79 + . . scaffold1281 GLEAN mRNA 6818 22494 0.72874 + . ID=CGI_10001420; scaffold1281 WUBlastX LTR_DIRS 8243 8944 394 + . . scaffold1281 GLEAN mRNA 6818 22494 0.72874 + . ID=CGI_10001420; scaffold1281 WUBlastX LTR_DIRS 9807 10085 193 + . . scaffold1281 GLEAN mRNA 6818 22494 0.72874 + . ID=CGI_10001420; scaffold352 WUBlastX LTR_Gypsy 153599 154411 69 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold41732 WUBlastX LINE_RTE-X 57329 57901 169 - . . scaffold41732 GLEAN mRNA 19646 61723 0.444801 - . ID=CGI_10005478; scaffold41732 WUBlastX LINE_RTE-X 58448 58996 350 - . . scaffold41732 GLEAN mRNA 19646 61723 0.444801 - . ID=CGI_10005478; scaffold1347 WUBlastX DNA_IS4EU 27301 28836 869 - . . scaffold1347 GLEAN mRNA 21277 29429 0.935835 - . ID=CGI_10012972; scaffold535 WUBlastX LTR_Copia 556749 556955 34 + . . scaffold535 GLEAN mRNA 556071 562996 0.477113 + . ID=CGI_10020299; scaffold1652 WUBlastX LINE_CR1 225573 225779 25 - . . scaffold1652 GLEAN mRNA 224467 242523 0.999676 - . ID=CGI_10012393; scaffold1401 WUBlastX LINE_L2 6296 6619 59 - . . scaffold1401 GLEAN mRNA 431 6619 0.997038 - . ID=CGI_10001278; scaffold4 WUBlastX LINE_Jockey 536172 536219 21 + . . scaffold4 GLEAN mRNA 536172 536474 1 + . ID=CGI_10021182; scaffold1800 WUBlastX DNA_P 55920 56039 77 + . . scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; scaffold338 WUBlastX LINE_RTE-X 226235 226450 52 - . . scaffold338 GLEAN mRNA 225763 251936 1 + . ID=CGI_10011188; scaffold1213 WUBlastX LINE_RTE-X 52040 52255 60 + . . scaffold1213 GLEAN mRNA 37787 69926 0.920174 - . ID=CGI_10027426; scaffold610 WUBlastX LINE_RTE-X 598022 598234 48 - . . scaffold610 GLEAN mRNA 570530 599736 0.974441 - . ID=CGI_10021131; scaffold421 WUBlastX LINE_RTE-X 247350 247667 52 - . . scaffold421 GLEAN mRNA 232502 254015 0.999281 - . ID=CGI_10012158; scaffold337 WUBlastX LINE_RTE-BovB 570106 570582 28 + . . scaffold337 GLEAN mRNA 562237 577539 1 - . ID=CGI_10028070; scaffold43122 WUBlastX LTR_DIRS 142929 143192 24 + . . scaffold43122 GLEAN mRNA 115837 148634 0.68095 - . ID=CGI_10008940; scaffold43122 WUBlastX LTR_DIRS 143846 143968 27 + . . scaffold43122 GLEAN mRNA 115837 148634 0.68095 - . ID=CGI_10008940; scaffold22 WUBlastX DNA_TcMar-Tc2 1863772 1863942 57 + . . scaffold22 GLEAN mRNA 1863760 1864161 0.544455 + . ID=CGI_10028938; scaffold43676 WUBlastX LINE_L2 214646 214963 68 + . . scaffold43676 GLEAN mRNA 211597 216385 0.756935 + . ID=CGI_10011734; scaffold38780 WUBlastX LTR_Gypsy 13364 13633 27 + . . scaffold38780 GLEAN mRNA 2671 16848 0.959487 - . ID=CGI_10002959; scaffold1108 WUBlastX LTR_Gypsy 420219 420347 76 - . . scaffold1108 GLEAN mRNA 412229 432514 0.990447 + . ID=CGI_10021980; scaffold128 WUBlastX LINE_Penelope 96736 96900 72 - . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; scaffold402 WUBlastX LINE_L1 517674 517880 26 + . . scaffold402 GLEAN mRNA 514262 530560 0.999749 + . ID=CGI_10019333; scaffold168 WUBlastX LINE_L1 752318 752824 53 - . . scaffold168 GLEAN mRNA 746142 765920 0.683894 - . ID=CGI_10025611; scaffold269 WUBlastX LINE_RTE-X 197780 198103 96 - . . scaffold269 GLEAN mRNA 192453 200699 0.999993 + . ID=CGI_10018996; scaffold469 WUBlastX LINE_CR1-L2 927871 928071 23 + . . scaffold469 GLEAN mRNA 925100 941633 0.564574 + . ID=CGI_10024703; C35042 WUBlastX LINE_CR1-L2 13737 13847 55 - . . C35042 GLEAN mRNA 1730 15534 0.391528 + . ID=CGI_10001403; scaffold38458 WUBlastX LINE_L2 55758 56000 29 + . . scaffold38458 GLEAN mRNA 38002 56000 0.84332 + . ID=CGI_10002784; scaffold163 WUBlastX LTR_Gypsy 476425 476997 38 + . . scaffold163 GLEAN mRNA 440738 483510 0.311673 + . ID=CGI_10018629; scaffold163 WUBlastX LTR_Gypsy 477731 477931 41 + . . scaffold163 GLEAN mRNA 440738 483510 0.311673 + . ID=CGI_10018629; scaffold43200 WUBlastX LINE_R2-Hero 123207 123563 75 + . . scaffold43200 GLEAN mRNA 98578 129296 0.928438 + . ID=CGI_10009329; scaffold922 WUBlastX DNA_Harbinger 93466 93876 71 - . . scaffold922 GLEAN mRNA 65021 94381 0.690826 - . ID=CGI_10005662; scaffold115 WUBlastX DNA_hAT-Tip100 129382 129834 79 + . . scaffold115 GLEAN mRNA 126783 131612 1 - . ID=CGI_10021378; scaffold1237 WUBlastX LINE_L1-Tx1 204780 205073 51 + . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold425 WUBlastX LINE_L1-Tx1 514841 515119 84 - . . scaffold425 GLEAN mRNA 510364 519174 0.533682 - . ID=CGI_10025986; scaffold986 WUBlastX LINE_L1 233183 233623 112 - . . scaffold986 GLEAN mRNA 229802 234961 0.889891 - . ID=CGI_10009965; scaffold38750 WUBlastX LINE_RTE-X 4462 4677 82 + . . scaffold38750 GLEAN mRNA 2403 8066 0.927797 + . ID=CGI_10002953; scaffold395 WUBlastX LINE_RTE-X 333936 334175 45 + . . scaffold395 GLEAN mRNA 321463 334797 0.32577 + . ID=CGI_10013986; scaffold57 WUBlastX LINE_RTE-X 192277 192561 65 - . . scaffold57 GLEAN mRNA 175786 215064 0.533671 + . ID=CGI_10020545; scaffold53 WUBlastX LINE_L1-Tx1 548185 548358 89 - . . scaffold53 GLEAN mRNA 545001 589869 0.567528 + . ID=CGI_10026671; scaffold522 WUBlastX LINE_RTE-X 224020 224229 74 + . . scaffold522 GLEAN mRNA 220239 233086 0.999661 + . ID=CGI_10020320; scaffold866 WUBlastX DNA_Sola 91547 91723 109 + . . scaffold866 GLEAN mRNA 85549 108844 0.993209 + . ID=CGI_10004749; scaffold967 WUBlastX DNA_hAT-Tip100 231444 231710 80 + . . scaffold967 GLEAN mRNA 210935 232101 0.931586 + . ID=CGI_10015461; scaffold36936 WUBlastX DNA_Crypton 15619 15975 107 - . . scaffold36936 GLEAN mRNA 314 25498 0.932631 - . ID=CGI_10002182; scaffold880 WUBlastX LTR_Gypsy 511860 512039 77 + . . scaffold880 GLEAN mRNA 490990 515117 0.998312 - . ID=CGI_10022196; scaffold1558 WUBlastX LINE_L1-Tx1 41366 41689 22 - . . scaffold1558 GLEAN mRNA 34398 73907 0.517269 - . ID=CGI_10004094; scaffold172 WUBlastX LTR_Gypsy 15846 15950 84 + . . scaffold172 GLEAN mRNA 5002 17897 0.999274 - . ID=CGI_10013508; scaffold772 WUBlastX DNA_PiggyBac 282127 282486 47 + . . scaffold772 GLEAN mRNA 277746 285976 1 + . ID=CGI_10016590; scaffold40638 WUBlastX DNA_Zator 5627 5731 28 + . . scaffold40638 GLEAN mRNA 3072 18093 0.976327 + . ID=CGI_10004284; scaffold40638 WUBlastX DNA_Zator 5868 6071 77 + . . scaffold40638 GLEAN mRNA 3072 18093 0.976327 + . ID=CGI_10004284; scaffold1780 WUBlastX LINE_L1 111354 112319 69 + . . scaffold1780 GLEAN mRNA 107008 115035 0.543 - . ID=CGI_10014549; scaffold1350 WUBlastX LTR_Ngaro 109607 109831 81 - . . scaffold1350 GLEAN mRNA 92477 120800 0.694726 - . ID=CGI_10017297; scaffold698 WUBlastX LINE_L1 216274 217083 54 - . . scaffold698 GLEAN mRNA 215942 226142 0.793097 + . ID=CGI_10020736; scaffold271 WUBlastX LINE_L1 470374 470874 35 - . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold1870 WUBlastX LINE_RTE-X 109821 110237 55 + . . scaffold1870 GLEAN mRNA 96078 123718 0.283709 - . ID=CGI_10013182; scaffold40828 WUBlastX LTR_Gypsy 56941 57114 61 - . . scaffold40828 GLEAN mRNA 28348 61048 0.605765 + . ID=CGI_10004502; scaffold1894 WUBlastX LINE_L1 41620 41796 45 - . . scaffold1894 GLEAN mRNA 18177 67015 0.499328 - . ID=CGI_10013334; scaffold150 WUBlastX DNA_Kolobok 1581197 1581439 118 + . . scaffold150 GLEAN mRNA 1577225 1599619 0.685515 + . ID=CGI_10028690; scaffold606 WUBlastX LINE_Penelope 207337 207615 97 - . . scaffold606 GLEAN mRNA 205072 212919 0.983743 - . ID=CGI_10012948; scaffold63 WUBlastX DNA_En-Spm 415282 415608 79 + . . scaffold63 GLEAN mRNA 406163 425324 1 - . ID=CGI_10017281; scaffold41034 WUBlastX LTR_DIRS 58754 58849 53 + . . scaffold41034 GLEAN mRNA 40186 62880 0.65884 + . ID=CGI_10004651; scaffold1093 WUBlastX LINE_Penelope 405098 405415 65 - . . scaffold1093 GLEAN mRNA 404049 410721 0.987785 + . ID=CGI_10019807; scaffold42022 WUBlastX LINE_L2 33701 34054 106 + . . scaffold42022 GLEAN mRNA 12310 51169 0.982585 - . ID=CGI_10006049; scaffold280 WUBlastX LTR_DIRS 649597 649971 96 + . . scaffold280 GLEAN mRNA 645758 661781 0.996424 - . ID=CGI_10024601; scaffold754 WUBlastX DNA_IS4EU 140686 140859 45 + . . scaffold754 GLEAN mRNA 139769 141980 1 - . ID=CGI_10014067; scaffold366 WUBlastX DNA_Harbinger 117429 117698 107 + . . scaffold366 GLEAN mRNA 106879 123133 0.490969 + . ID=CGI_10007776; scaffold733 WUBlastX LINE_L1 891259 891732 140 - . . scaffold733 GLEAN mRNA 864535 893177 0.998838 + . ID=CGI_10025893; scaffold308 WUBlastX DNA_hAT-Tip100 102400 102711 100 - . . scaffold308 GLEAN mRNA 89849 109933 0.990769 - . ID=CGI_10011007; scaffold1323 WUBlastX LINE_Penelope 12096 12263 32 + . . scaffold1323 GLEAN mRNA 5100 53779 0.182338 + . ID=CGI_10009080; scaffold547 WUBlastX LTR_Gypsy-Cigr 454080 454526 149 + . . scaffold547 GLEAN mRNA 453649 455262 0.872777 + . ID=CGI_10018858; scaffold40282 WUBlastX LTR_Gypsy 31939 32229 84 + . . scaffold40282 GLEAN mRNA 26181 34807 1 + . ID=CGI_10004001; scaffold1377 WUBlastX DNA_IS4EU 186856 187200 124 + . . scaffold1377 GLEAN mRNA 179618 201716 0.456444 + . ID=CGI_10008623; scaffold780 WUBlastX LTR_Ngaro 965759 966301 125 + . . scaffold780 GLEAN mRNA 959842 972028 0.999936 - . ID=CGI_10024749; scaffold1650 WUBlastX DNA_TcMar-Marin 460811 461488 140 + . . scaffold1650 GLEAN mRNA 454767 463877 0.937811 + . ID=CGI_10017782; scaffold1742 WUBlastX DNA_Harbinger 140366 141202 79 - . . scaffold1742 GLEAN mRNA 139017 145553 0.542354 - . ID=CGI_10010934; scaffold37148 WUBlastX LINE_RTE-BovB 29599 29736 32 + . . scaffold37148 GLEAN mRNA 9385 30637 0.645987 - . ID=CGI_10002291; scaffold37148 WUBlastX LINE_RTE-BovB 29713 29874 27 + . . scaffold37148 GLEAN mRNA 9385 30637 0.645987 - . ID=CGI_10002291; scaffold37148 WUBlastX LINE_RTE-BovB 28044 28175 21 + . . scaffold37148 GLEAN mRNA 9385 30637 0.645987 - . ID=CGI_10002291; scaffold37148 WUBlastX LINE_RTE-BovB 28857 29402 38 + . . scaffold37148 GLEAN mRNA 9385 30637 0.645987 - . ID=CGI_10002291; scaffold419 WUBlastX LINE_RTE-X 807522 808292 74 + . . scaffold419 GLEAN mRNA 806382 811629 0.999675 - . ID=CGI_10028368; scaffold39088 WUBlastX DNA_TcMar-Tc1 41238 41435 66 + . . scaffold39088 GLEAN mRNA 31554 48725 0.999086 - . ID=CGI_10003173; scaffold647 WUBlastX LINE_L1-Tx1 136466 137089 129 - . . scaffold647 GLEAN mRNA 124845 138037 0.631256 + . ID=CGI_10006931; scaffold1549 WUBlastX LINE_L1-Tx1 8336 8719 33 + . . scaffold1549 GLEAN mRNA 4210 11718 0.999526 - . ID=CGI_10002845; scaffold544 WUBlastX DNA_TcMar-Pogo 738935 739033 65 + . . scaffold544 GLEAN mRNA 727518 748903 0.982522 - . ID=CGI_10022583; scaffold41954 WUBlastX LINE_L1 102339 102602 57 - . . scaffold41954 GLEAN mRNA 93049 113682 0.989895 + . ID=CGI_10005853; scaffold588 WUBlastX LINE_Penelope 146429 146662 66 - . . scaffold588 GLEAN mRNA 132834 155339 0.82921 + . ID=CGI_10016211; scaffold271 WUBlastX LTR_Gypsy-Cigr 781158 781850 170 - . . scaffold271 GLEAN mRNA 780567 782249 0.988234 - . ID=CGI_10024495; scaffold38884 WUBlastX LTR_DIRS 45866 46876 220 + . . scaffold38884 GLEAN mRNA 44613 50381 1 - . ID=CGI_10003004; scaffold1397 WUBlastX DNA_Kolobok-IS4 209802 210164 141 - . . scaffold1397 GLEAN mRNA 206907 222276 0.644927 - . ID=CGI_10017120; scaffold1397 WUBlastX DNA_Kolobok-IS4 210130 210384 44 - . . scaffold1397 GLEAN mRNA 206907 222276 0.644927 - . ID=CGI_10017120; scaffold41786 WUBlastX DNA_hAT-Tip100 109138 109902 93 + . . scaffold41786 GLEAN mRNA 109063 112441 0.994534 + . ID=CGI_10005626; scaffold1703 WUBlastX LTR_Gypsy 666972 670733 1478 + . . scaffold1703 GLEAN mRNA 642760 671813 0.998976 - . ID=CGI_10023072; scaffold753 WUBlastX LINE_CR1 52047 52328 210 + . . scaffold753 GLEAN mRNA 36571 68340 0.958809 + . ID=CGI_10014195; scaffold680 WUBlastX LINE_Penelope 36985 37938 146 + . . scaffold680 GLEAN mRNA 28858 40321 0.544852 - . ID=CGI_10003337; scaffold885 WUBlastX DNA_Kolobok 12557 12691 23 + . . scaffold885 GLEAN mRNA 11627 19636 0.352613 - . ID=CGI_10025184; scaffold1442 WUBlastX LINE_L1-Tx1 35767 36588 84 - . . scaffold1442 GLEAN mRNA 28034 38698 1 - . ID=CGI_10003584; scaffold1442 WUBlastX LINE_L1-Tx1 36602 38143 928 - . . scaffold1442 GLEAN mRNA 28034 38698 1 - . ID=CGI_10003584; scaffold1442 WUBlastX LINE_L1-Tx1 38142 38627 293 - . . scaffold1442 GLEAN mRNA 28034 38698 1 - . ID=CGI_10003584; scaffold42788 WUBlastX LINE_L1-Tx1 105912 106076 43 + . . scaffold42788 GLEAN mRNA 99407 151977 0.339426 + . ID=CGI_10007755; scaffold42788 WUBlastX LINE_L1-Tx1 106079 106843 60 + . . scaffold42788 GLEAN mRNA 99407 151977 0.339426 + . ID=CGI_10007755; scaffold61 WUBlastX LINE_RTE-X 92270 92707 104 + . . scaffold61 GLEAN mRNA 83781 97404 0.999676 - . ID=CGI_10016342; scaffold248 WUBlastX LTR_Pao 86227 86535 230 - . . scaffold248 GLEAN mRNA 82023 112174 0.53738 + . ID=CGI_10017220; scaffold1016 WUBlastX DNA_Kolobok 467768 467989 42 + . . scaffold1016 GLEAN mRNA 467114 469577 0.532282 + . ID=CGI_10016902; scaffold1016 WUBlastX DNA_Kolobok 468113 468271 37 + . . scaffold1016 GLEAN mRNA 467114 469577 0.532282 + . ID=CGI_10016902; scaffold1016 WUBlastX DNA_Kolobok 468273 468362 33 + . . scaffold1016 GLEAN mRNA 467114 469577 0.532282 + . ID=CGI_10016902; scaffold1016 WUBlastX DNA_Kolobok 468926 469234 92 + . . scaffold1016 GLEAN mRNA 467114 469577 0.532282 + . ID=CGI_10016902; scaffold1475 WUBlastX LINE_L1-Tx1 109002 109889 72 - . . scaffold1475 GLEAN mRNA 105013 111468 0.650413 - . ID=CGI_10005953; scaffold226 WUBlastX DNA_hAT 781564 781680 52 + . . scaffold226 GLEAN mRNA 780022 794397 0.995567 + . ID=CGI_10025375; scaffold1448 WUBlastX LTR_Ngaro 29301 29786 116 - . . scaffold1448 GLEAN mRNA 28289 31614 0.624176 - . ID=CGI_10011853; scaffold1454 WUBlastX DNA_Helitron 55964 56632 268 - . . scaffold1454 GLEAN mRNA 52591 59447 0.570116 - . ID=CGI_10004313; scaffold1036 WUBlastX DNA_Maverick 596872 597057 55 + . . scaffold1036 GLEAN mRNA 594409 600469 0.995654 - . ID=CGI_10019975; scaffold9 WUBlastX LINE_CR1 95410 95451 237 + . . scaffold9 GLEAN mRNA 95410 95799 0.999934 + . ID=CGI_10006688; scaffold43146 WUBlastX DNA_IS4EU 106607 106729 41 - . . scaffold43146 GLEAN mRNA 80112 107835 0.644637 + . ID=CGI_10009042; scaffold39212 WUBlastX DNA_hAT-Tip100 53419 53571 33 - . . scaffold39212 GLEAN mRNA 30679 56961 0.415387 - . ID=CGI_10003233; scaffold1459 WUBlastX LTR_Gypsy 110081 110236 20 + . . scaffold1459 GLEAN mRNA 92847 117435 0.999674 - . ID=CGI_10010107; scaffold853 WUBlastX LINE_L2 433195 433275 21 - . . scaffold853 GLEAN mRNA 427674 436320 0.99996 - . ID=CGI_10017516; scaffold1532 WUBlastX LINE_RTE-X 410176 410643 53 - . . scaffold1532 GLEAN mRNA 405806 428910 0.729212 + . ID=CGI_10028250; scaffold1094 WUBlastX LINE_L1 629640 629921 40 + . . scaffold1094 GLEAN mRNA 609558 640373 0.531771 - . ID=CGI_10021838; C23316 WUBlastX LTR_Ngaro 644 660 32 - . . C23316 GLEAN mRNA 644 1111 0.999999 - . ID=CGI_10000116; scaffold393 WUBlastX LINE_RTE-X 1043409 1043513 35 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold41228 WUBlastX LINE_L1-Tx1 17788 18456 303 + . . scaffold41228 GLEAN mRNA 12628 43602 0.144447 - . ID=CGI_10004861; scaffold42226 WUBlastX DNA_Kolobok 121366 121638 87 - . . scaffold42226 GLEAN mRNA 107394 126585 0.842903 + . ID=CGI_10006364; scaffold1866 WUBlastX LINE_L2 224610 225188 64 + . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold156 WUBlastX LINE_R2-Hero 333086 333499 350 - . . scaffold156 GLEAN mRNA 326940 337481 0.63561 + . ID=CGI_10026496; scaffold925 WUBlastX LINE_RTE-X 199011 199331 238 + . . scaffold925 GLEAN mRNA 185655 201680 0.878781 - . ID=CGI_10017418; scaffold117 WUBlastX LINE_CR1 51614 52027 217 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold42348 WUBlastX LINE_RTE-X 101741 102616 224 - . . scaffold42348 GLEAN mRNA 96568 107151 0.643244 - . ID=CGI_10006683; scaffold31 WUBlastX DNA_TcMar-Tc1 180766 181050 173 - . . scaffold31 GLEAN mRNA 167305 183497 0.965717 + . ID=CGI_10013560; scaffold43008 WUBlastX LINE_L1-Tx1 84262 84363 27 - . . scaffold43008 GLEAN mRNA 78684 87806 0.543465 - . ID=CGI_10008462; scaffold1210 WUBlastX DNA_Academ 243034 243171 40 - . . scaffold1210 GLEAN mRNA 242968 243372 0.866433 - . ID=CGI_10014607; scaffold1210 WUBlastX DNA_Academ 243193 243372 207 - . . scaffold1210 GLEAN mRNA 242968 243372 0.866433 - . ID=CGI_10014607; scaffold772 WUBlastX DNA_PiggyBac 282598 282726 73 + . . scaffold772 GLEAN mRNA 277746 285976 1 + . ID=CGI_10016590; scaffold772 WUBlastX DNA_PiggyBac 285039 285143 36 + . . scaffold772 GLEAN mRNA 277746 285976 1 + . ID=CGI_10016590; scaffold772 WUBlastX DNA_PiggyBac 285176 285244 20 + . . scaffold772 GLEAN mRNA 277746 285976 1 + . ID=CGI_10016590; scaffold772 WUBlastX DNA_PiggyBac 285485 285949 154 + . . scaffold772 GLEAN mRNA 277746 285976 1 + . ID=CGI_10016590; scaffold891 WUBlastX DNA_En-Spm 191134 191334 79 + . . scaffold891 GLEAN mRNA 189251 197847 0.702385 + . ID=CGI_10009074; scaffold891 WUBlastX DNA_En-Spm 191508 191648 46 + . . scaffold891 GLEAN mRNA 189251 197847 0.702385 + . ID=CGI_10009074; scaffold502 WUBlastX LINE_CR1 624950 625684 468 - . . scaffold502 GLEAN mRNA 606784 627664 0.999597 + . ID=CGI_10024338; scaffold1831 WUBlastX LINE_RTE-X 30584 31324 253 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-X 30584 31324 253 - . . scaffold1831 GLEAN mRNA 30321 42527 0.595655 - . ID=CGI_10002913; scaffold1831 WUBlastX LINE_RTE-X 31353 31667 161 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-X 31353 31667 161 - . . scaffold1831 GLEAN mRNA 30321 42527 0.595655 - . ID=CGI_10002913; scaffold743 WUBlastX DNA_Harbinger 208832 209416 302 + . . scaffold743 GLEAN mRNA 190625 210773 0.715666 - . ID=CGI_10008616; scaffold743 WUBlastX DNA_Harbinger 209430 209765 85 + . . scaffold743 GLEAN mRNA 190625 210773 0.715666 - . ID=CGI_10008616; scaffold42648 WUBlastX LTR_Pao 170554 172209 443 - . . scaffold42648 GLEAN mRNA 167771 174774 0.98388 - . ID=CGI_10007395; scaffold1838 WUBlastX LINE_RTE-X 365215 367605 397 + . . scaffold1838 GLEAN mRNA 361613 368125 0.631432 + . ID=CGI_10014266; scaffold365 WUBlastX DNA_TcMar-Tc1 698815 699693 423 - . . scaffold365 GLEAN mRNA 690001 715431 0.888354 - . ID=CGI_10022752; scaffold1603 WUBlastX LTR_Pao 334127 334576 22 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold1865 WUBlastX DNA_TcMar-Tc1 134537 135226 381 - . . scaffold1865 GLEAN mRNA 122219 140121 0.998221 + . ID=CGI_10013535; scaffold39778 WUBlastX LINE_RTE-X 42561 43463 451 + . . scaffold39778 GLEAN mRNA 34210 51922 0.521329 + . ID=CGI_10003608; scaffold48 WUBlastX DNA_TcMar-Tc2 530655 531173 417 + . . scaffold48 GLEAN mRNA 529087 543822 0.928882 + . ID=CGI_10023906; scaffold4 WUBlastX LINE_L1-Tx1 476520 477029 162 - . . scaffold4 GLEAN mRNA 463325 481913 0.998731 + . ID=CGI_10021180; C31096 WUBlastX LTR_Ngaro 5737 6378 469 - . . C31096 GLEAN mRNA 4535 6700 0.999978 - . ID=CGI_10000705; scaffold1097 WUBlastX LINE_RTE-BovB 683079 683210 57 - . . scaffold1097 GLEAN mRNA 671182 687187 0.811238 + . ID=CGI_10024541; scaffold546 WUBlastX LTR_Gypsy 249274 251256 584 - . . scaffold546 GLEAN mRNA 249088 251722 0.586602 - . ID=CGI_10020999; scaffold36598 WUBlastX LTR_Ngaro 28892 29107 112 - . . scaffold36598 GLEAN mRNA 27586 31293 0.99428 - . ID=CGI_10002013; scaffold22 WUBlastX LINE_L2 1083737 1085011 487 + . . scaffold22 GLEAN mRNA 1079633 1088835 0.644932 - . ID=CGI_10028896; scaffold206 WUBlastX LTR_Gypsy 81372 82139 236 + . . scaffold206 GLEAN mRNA 57948 87960 0.702119 + . ID=CGI_10011372; scaffold393 WUBlastX LINE_RTE-X 1040227 1040445 98 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold393 WUBlastX LINE_RTE-X 1040444 1041454 276 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold1241 WUBlastX LINE_RTE-X 331492 332895 620 + . . scaffold1241 GLEAN mRNA 329086 342003 0.999796 + . ID=CGI_10016436; scaffold743 WUBlastX LINE_RTE-X 108946 109134 484 + . . scaffold743 GLEAN mRNA 83791 109134 0.449406 + . ID=CGI_10008614; scaffold1551 WUBlastX LTR_Ngaro 73714 74142 165 + . . scaffold1551 GLEAN mRNA 48041 86336 0.263167 + . ID=CGI_10011471; scaffold35438 WUBlastX LINE_L1-Tx1 9529 10494 52 - . . scaffold35438 GLEAN mRNA 3327 22372 0.999028 - . ID=CGI_10001514; scaffold1009 WUBlastX LTR_Copia 165216 166661 870 - . . scaffold1009 GLEAN mRNA 163164 171986 0.959931 - . ID=CGI_10028721; scaffold492 WUBlastX DNA_IS4EU 798434 799219 742 - . . scaffold492 GLEAN mRNA 798431 799219 1 - . ID=CGI_10024865; scaffold58 WUBlastX LTR_Gypsy 570333 570746 35 - . . scaffold58 GLEAN mRNA 565797 572122 0.982335 - . ID=CGI_10023152; scaffold58 WUBlastX LTR_Gypsy 570333 570746 35 - . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; scaffold1127 WUBlastX LINE_L1-Tx1 19819 20079 53 - . . scaffold1127 GLEAN mRNA 44 22807 0.494799 - . ID=CGI_10010645; scaffold829 WUBlastX LINE_L2 82392 82748 49 - . . scaffold829 GLEAN mRNA 82186 82748 0.9999 - . ID=CGI_10021139; scaffold38934 WUBlastX LTR_Ngaro 20043 20228 39 - . . scaffold38934 GLEAN mRNA 14643 26625 0.999796 + . ID=CGI_10003096; scaffold453 WUBlastX LTR_Gypsy 142758 142886 25 + . . scaffold453 GLEAN mRNA 138101 157244 0.160604 + . ID=CGI_10015041; scaffold276 WUBlastX DNA_IS4EU 30469 30549 20 - . . scaffold276 GLEAN mRNA 27405 34935 0.425332 - . ID=CGI_10006435; scaffold772 WUBlastX DNA_hAT-hAT5 243667 243828 54 + . . scaffold772 GLEAN mRNA 238963 261048 0.714694 - . ID=CGI_10016587; scaffold160 WUBlastX DNA_hAT-Tip100 523789 523983 38 - . . scaffold160 GLEAN mRNA 523738 543493 0.85871 - . ID=CGI_10020606; scaffold43072 WUBlastX LTR_Gypsy 24474 24593 45 - . . scaffold43072 GLEAN mRNA 22754 55456 0.695082 - . ID=CGI_10008697; scaffold489 WUBlastX DNA_Harbinger 112760 113209 22 - . . scaffold489 GLEAN mRNA 93550 113740 0.603671 - . ID=CGI_10020228; scaffold100 WUBlastX DNA_TcMar-Tc1 440742 440936 71 - . . scaffold100 GLEAN mRNA 434385 451106 0.72825 - . ID=CGI_10026438; scaffold149 WUBlastX LINE_L1-Tx1 192057 192422 42 + . . scaffold149 GLEAN mRNA 179199 193397 0.990232 - . ID=CGI_10025295; scaffold36642 WUBlastX LINE_L1 3125 3268 43 - . . scaffold36642 GLEAN mRNA 976 27657 0.999986 + . ID=CGI_10002025; scaffold766 WUBlastX LINE_I-Nimb 38031 38474 46 + . . scaffold766 GLEAN mRNA 34909 39578 1 + . ID=CGI_10003456; scaffold401 WUBlastX LINE_RTE-X 156382 156465 35 - . . scaffold401 GLEAN mRNA 151217 157765 0.728444 + . ID=CGI_10006994; scaffold198 WUBlastX DNA_TcMar-Marin 426676 426807 20 + . . scaffold198 GLEAN mRNA 419796 449287 0.84054 + . ID=CGI_10027808; scaffold1241 WUBlastX LINE_RTE-X 260396 260545 34 + . . scaffold1241 GLEAN mRNA 230364 272061 0.65035 - . ID=CGI_10016431; scaffold1804 WUBlastX DNA_PiggyBac 259163 259396 38 - . . scaffold1804 GLEAN mRNA 259046 259441 1 - . ID=CGI_10013376; scaffold301 WUBlastX DNA_Sola 956466 956624 65 - . . scaffold301 GLEAN mRNA 935860 957762 0.976661 - . ID=CGI_10026737; scaffold502 WUBlastX LINE_L1-Tx1 73582 73884 31 - . . scaffold502 GLEAN mRNA 66995 88059 0.642831 + . ID=CGI_10024313; scaffold619 WUBlastX LTR_Ngaro 483837 483980 47 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold1321 WUBlastX LTR_Gypsy 136608 136689 45 - . . scaffold1321 GLEAN mRNA 136608 137201 1 - . ID=CGI_10010662; scaffold610 WUBlastX DNA_hAT-Ac 19453 19566 100 + . . scaffold610 GLEAN mRNA 19426 23428 0.987056 + . ID=CGI_10021082; scaffold204 WUBlastX DNA_Kolobok-Hyd 395170 395295 31 + . . scaffold204 GLEAN mRNA 394042 414406 0.339936 + . ID=CGI_10026106; scaffold1488 WUBlastX LINE_RTE-X 96285 96545 36 + . . scaffold1488 GLEAN mRNA 90513 121461 0.719592 + . ID=CGI_10005179; scaffold313 WUBlastX LINE_RTE-X 134319 134515 78 + . . scaffold313 GLEAN mRNA 134319 135998 0.83601 - . ID=CGI_10026584; scaffold866 WUBlastX DNA_Sola 87454 87627 86 + . . scaffold866 GLEAN mRNA 85549 108844 0.993209 + . ID=CGI_10004749; scaffold1188 WUBlastX LTR_Gypsy 205417 205755 27 - . . scaffold1188 GLEAN mRNA 201691 209926 0.974251 - . ID=CGI_10025462; scaffold1788 WUBlastX RC_Helitron 45566 45715 102 - . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold783 WUBlastX LINE_RTE-X 136101 136271 89 - . . scaffold783 GLEAN mRNA 131104 140635 0.99762 + . ID=CGI_10011677; scaffold1789 WUBlastX DNA_Kolobok 16837 17133 82 + . . scaffold1789 GLEAN mRNA 10291 23583 0.974284 + . ID=CGI_10003175; scaffold1537 WUBlastX LINE_Penelope 8581 8742 88 + . . scaffold1537 GLEAN mRNA 2 9370 0.999999 + . ID=CGI_10001150; scaffold34282 WUBlastX LINE_L2 14291 14380 22 - . . scaffold34282 GLEAN mRNA 2734 14490 1 - . ID=CGI_10001256; scaffold79 WUBlastX LINE_RTE-X 265873 266067 41 + . . scaffold79 GLEAN mRNA 257196 271359 0.644901 + . ID=CGI_10024620; scaffold85 WUBlastX LINE_RTE-X 622680 622967 40 + . . scaffold85 GLEAN mRNA 611975 636254 1 - . ID=CGI_10020719; scaffold481 WUBlastX LINE_CR1 1209726 1210037 34 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold42840 WUBlastX DNA_TcMar-Marin 186057 186464 87 - . . scaffold42840 GLEAN mRNA 176465 192129 0.833079 - . ID=CGI_10007840; scaffold1219 WUBlastX DNA_hAT-Blackja 896885 897184 80 - . . scaffold1219 GLEAN mRNA 887545 905179 0.837482 - . ID=CGI_10024307; scaffold1726 WUBlastX LINE_RTE-BovB 172768 172944 91 - . . scaffold1726 GLEAN mRNA 161002 182449 0.998535 + . ID=CGI_10015636; scaffold11 WUBlastX LTR_Gypsy 62876 63289 87 - . . scaffold11 GLEAN mRNA 61086 64490 0.65426 - . ID=CGI_10015522; scaffold11 WUBlastX LTR_Gypsy 61353 61673 131 - . . scaffold11 GLEAN mRNA 61086 64490 0.65426 - . ID=CGI_10015522; scaffold41884 WUBlastX RC_Helitron 51652 52116 81 + . . scaffold41884 GLEAN mRNA 50798 64593 0.351321 + . ID=CGI_10005780; scaffold41568 WUBlastX LINE_RTE-X 78117 78443 24 - . . scaffold41568 GLEAN mRNA 75182 91109 0.978007 + . ID=CGI_10005300; scaffold57 WUBlastX LINE_RTE-X 191992 192315 44 - . . scaffold57 GLEAN mRNA 175786 215064 0.533671 + . ID=CGI_10020545; scaffold1323 WUBlastX DNA_Sola 24829 25119 93 - . . scaffold1323 GLEAN mRNA 24733 25119 0.618241 - . ID=CGI_10009081; scaffold1323 WUBlastX DNA_Sola 24829 25218 93 - . . scaffold1323 GLEAN mRNA 5100 53779 0.182338 + . ID=CGI_10009080; scaffold1558 WUBlastX LINE_L1-Tx1 40901 41203 33 - . . scaffold1558 GLEAN mRNA 34398 73907 0.517269 - . ID=CGI_10004094; scaffold453 WUBlastX DNA_Kolobok 301458 301637 35 + . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold453 WUBlastX DNA_Kolobok 302372 302482 59 + . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold942 WUBlastX LTR_Pao 344392 344736 158 - . . scaffold942 GLEAN mRNA 341388 349228 0.998888 - . ID=CGI_10019165; scaffold11 WUBlastX LTR_Gypsy 61413 61736 167 - . . scaffold11 GLEAN mRNA 61086 64490 0.65426 - . ID=CGI_10015522; scaffold793 WUBlastX DNA_NOF 62970 63155 89 + . . scaffold793 GLEAN mRNA 61685 72905 0.384935 + . ID=CGI_10010892; scaffold793 WUBlastX DNA_NOF 63663 63770 58 + . . scaffold793 GLEAN mRNA 61685 72905 0.384935 + . ID=CGI_10010892; scaffold41974 WUBlastX LINE_RTE-BovB 30891 31721 72 + . . scaffold41974 GLEAN mRNA 275 36868 0.405305 - . ID=CGI_10005902; scaffold1174 WUBlastX LINE_CR1 141217 141258 20 - . . scaffold1174 GLEAN mRNA 122742 144408 0.527772 + . ID=CGI_10026027; scaffold1036 WUBlastX LINE_L1-Tx1 240852 241886 139 - . . scaffold1036 GLEAN mRNA 228869 245204 0.994909 + . ID=CGI_10019957; scaffold1036 WUBlastX LINE_L1-Tx1 242768 243697 603 - . . scaffold1036 GLEAN mRNA 228869 245204 0.994909 + . ID=CGI_10019957; scaffold40282 WUBlastX LTR_Gypsy 76310 77272 135 - . . scaffold40282 GLEAN mRNA 56091 83549 0.539379 + . ID=CGI_10004002; scaffold40282 WUBlastX LTR_Gypsy 77290 77616 70 - . . scaffold40282 GLEAN mRNA 56091 83549 0.539379 + . ID=CGI_10004002; scaffold164 WUBlastX LTR_Gypsy 54286 54720 49 - . . scaffold164 GLEAN mRNA 40628 54980 0.99473 - . ID=CGI_10021845; scaffold43076 WUBlastX LTR_Gypsy 198141 198203 24 - . . scaffold43076 GLEAN mRNA 186716 211039 0.795025 + . ID=CGI_10008770; scaffold40874 WUBlastX LINE_L1-Tx1 80491 80928 132 - . . scaffold40874 GLEAN mRNA 69114 99157 0.188483 + . ID=CGI_10004438; scaffold94 WUBlastX LTR_Gypsy 65754 66497 443 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold1 WUBlastX LINE_CR1-L2 170477 170866 35 + . . scaffold1 GLEAN mRNA 163980 185527 0.742263 + . ID=CGI_10013469; scaffold1826 WUBlastX DNA_Harbinger 47881 48165 164 - . . scaffold1826 GLEAN mRNA 39665 57424 0.756838 + . ID=CGI_10006241; scaffold1860 WUBlastX LINE_RTE-BovB 92351 92830 155 - . . scaffold1860 GLEAN mRNA 86890 98787 0.482927 + . ID=CGI_10013940; scaffold1800 WUBlastX LINE_CR1 262710 262958 183 - . . scaffold1800 GLEAN mRNA 251153 263258 0.999949 - . ID=CGI_10016404; scaffold267 WUBlastX DNA_Kolobok 493287 493478 84 - . . scaffold267 GLEAN mRNA 493275 498578 0.739869 - . ID=CGI_10018314; scaffold94 WUBlastX LTR_Gypsy-Cigr 66667 66885 85 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold41660 WUBlastX LINE_L1-Tx1 109560 109907 33 - . . scaffold41660 GLEAN mRNA 108736 121603 0.999676 + . ID=CGI_10005401; scaffold41660 WUBlastX LINE_L1-Tx1 109913 111604 943 - . . scaffold41660 GLEAN mRNA 108736 121603 0.999676 + . ID=CGI_10005401; scaffold165 WUBlastX LTR_Gypsy 110693 111025 44 + . . scaffold165 GLEAN mRNA 100697 128503 0.998921 + . ID=CGI_10015315; scaffold222 WUBlastX LINE_L2 137985 139706 1199 - . . scaffold222 GLEAN mRNA 134195 141016 0.626444 - . ID=CGI_10007124; scaffold406 WUBlastX LTR_Gypsy-Cigr 132613 133956 104 + . . scaffold406 GLEAN mRNA 128241 151323 0.854188 - . ID=CGI_10023840; scaffold749 WUBlastX LINE_RTE-X 53826 54248 118 - . . scaffold749 GLEAN mRNA 51985 56678 1 - . ID=CGI_10002827; scaffold828 WUBlastX LINE_L1-Tx1 75632 76267 344 + . . scaffold828 GLEAN mRNA 15085 78014 0.596994 - . ID=CGI_10007364; scaffold828 WUBlastX LINE_L1-Tx1 76766 77839 777 + . . scaffold828 GLEAN mRNA 15085 78014 0.596994 - . ID=CGI_10007364; scaffold1213 WUBlastX LTR_Ngaro 1135001 1135837 111 - . . scaffold1213 GLEAN mRNA 1112945 1137379 0.247457 - . ID=CGI_10027485; scaffold1862 WUBlastX DNA_IS4EU 659197 659583 187 + . . scaffold1862 GLEAN mRNA 655247 661635 1 - . ID=CGI_10021923; scaffold621 WUBlastX LTR_Ngaro 303778 304539 143 + . . scaffold621 GLEAN mRNA 265576 316930 0.261056 - . ID=CGI_10017677; scaffold42890 WUBlastX LTR_Gypsy 82665 82724 354 - . . scaffold42890 GLEAN mRNA 82665 91191 0.716263 - . ID=CGI_10008040; scaffold42890 WUBlastX LTR_Gypsy 82380 82724 354 - . . scaffold42890 GLEAN mRNA 76174 91402 0.99612 + . ID=CGI_10008039; scaffold42890 WUBlastX LTR_Gypsy 80453 81937 534 - . . scaffold42890 GLEAN mRNA 76174 91402 0.99612 + . ID=CGI_10008039; scaffold1316 WUBlastX LTR_Gypsy-Cigr 260098 260823 186 + . . scaffold1316 GLEAN mRNA 259603 261597 0.995793 + . ID=CGI_10016306; scaffold1322 WUBlastX LTR_Pao 408233 408436 39 - . . scaffold1322 GLEAN mRNA 394198 409376 0.999229 - . ID=CGI_10019477; scaffold532 WUBlastX RC_Helitron 279344 284014 1444 - . . scaffold532 GLEAN mRNA 274363 287689 0.998459 - . ID=CGI_10012533; scaffold1782 WUBlastX DNA_Kolobok 17769 18077 82 - . . scaffold1782 GLEAN mRNA 7792 19893 0.99249 - . ID=CGI_10004240; scaffold1782 WUBlastX DNA_Kolobok 19115 19231 37 - . . scaffold1782 GLEAN mRNA 7792 19893 0.99249 - . ID=CGI_10004240; scaffold37880 WUBlastX DNA_Harbinger 26455 26559 35 + . . scaffold37880 GLEAN mRNA 25813 26910 0.999833 + . ID=CGI_10002534; scaffold1244 WUBlastX LINE_Penelope 572053 572199 43 - . . scaffold1244 GLEAN mRNA 508938 634898 0.0392589 - . ID=CGI_10020838; scaffold41502 WUBlastX DNA_MuDR 27636 28853 153 + . . scaffold41502 GLEAN mRNA 4255 41708 0.838822 + . ID=CGI_10005171; scaffold852 WUBlastX LTR_Gypsy 66714 70346 1793 - . . scaffold852 GLEAN mRNA 66203 74351 1 + . ID=CGI_10012036; scaffold36768 WUBlastX LINE_L1-Tx1 36533 36691 82 + . . scaffold36768 GLEAN mRNA 29335 37620 1 + . ID=CGI_10002113; scaffold36768 WUBlastX LINE_L1-Tx1 36685 37212 169 + . . scaffold36768 GLEAN mRNA 29335 37620 1 + . ID=CGI_10002113; scaffold751 WUBlastX LTR_Gypsy 119902 120330 240 - . . scaffold751 GLEAN mRNA 116903 123513 0.999997 + . ID=CGI_10017386; scaffold1119 WUBlastX LINE_CR1 141706 142875 225 - . . scaffold1119 GLEAN mRNA 133915 143385 0.654676 + . ID=CGI_10009604; scaffold1119 WUBlastX LINE_CR1 141706 142875 225 - . . scaffold1119 GLEAN mRNA 141381 182559 0.993006 - . ID=CGI_10009605; scaffold40134 WUBlastX DNA_Harbinger 27976 28320 99 + . . scaffold40134 GLEAN mRNA 26792 31648 0.922114 - . ID=CGI_10003881; scaffold280 WUBlastX LINE_CR1-L2 590208 590663 247 - . . scaffold280 GLEAN mRNA 579437 592170 0.977964 - . ID=CGI_10024596; scaffold39240 WUBlastX DNA_MuDR 36714 37457 247 + . . scaffold39240 GLEAN mRNA 34664 37858 0.999618 - . ID=CGI_10003247; scaffold509 WUBlastX DNA_TcMar-Tc1 16959 17654 191 + . . scaffold509 GLEAN mRNA 496 19427 0.999716 - . ID=CGI_10018635; scaffold597 WUBlastX LINE_RTE-X 35928 36401 143 - . . scaffold597 GLEAN mRNA 30096 40610 0.999676 + . ID=CGI_10004927; scaffold870 WUBlastX DNA_hAT 48885 49019 20 + . . scaffold870 GLEAN mRNA 44819 52818 0.999949 + . ID=CGI_10007493; scaffold145 WUBlastX LINE_RTE-BovB 1137426 1137560 63 - . . scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold576 WUBlastX DNA_hAT 315302 316675 183 - . . scaffold576 GLEAN mRNA 315203 324696 0.999395 - . ID=CGI_10018773; scaffold576 WUBlastX DNA_hAT 316863 317015 43 - . . scaffold576 GLEAN mRNA 315203 324696 0.999395 - . ID=CGI_10018773; scaffold1249 WUBlastX LINE_CR1-L2 259781 260641 198 - . . scaffold1249 GLEAN mRNA 253670 268651 0.545459 - . ID=CGI_10019058; scaffold419 WUBlastX LINE_RTE-BovB 252230 252466 157 + . . scaffold419 GLEAN mRNA 243081 266501 0.999183 - . ID=CGI_10028337; scaffold4 WUBlastX LINE_L1 476431 476541 29 - . . scaffold4 GLEAN mRNA 463325 481913 0.998731 + . ID=CGI_10021180; scaffold588 WUBlastX LINE_Penelope 145993 146373 203 - . . scaffold588 GLEAN mRNA 132834 155339 0.82921 + . ID=CGI_10016211; scaffold1267 WUBlastX LINE_RTE-X 1044356 1044853 183 + . . scaffold1267 GLEAN mRNA 1030598 1050254 0.995555 + . ID=CGI_10025181; scaffold1267 WUBlastX LINE_RTE-X 1045200 1045529 71 + . . scaffold1267 GLEAN mRNA 1030598 1050254 0.995555 + . ID=CGI_10025181; scaffold1094 WUBlastX LINE_L1-Tx1 631673 631864 34 + . . scaffold1094 GLEAN mRNA 609558 640373 0.531771 - . ID=CGI_10021838; scaffold610 WUBlastX LTR_Gypsy-Cigr 129490 129825 99 - . . scaffold610 GLEAN mRNA 126484 141606 0.728666 + . ID=CGI_10021092; scaffold447 WUBlastX DNA_Harbinger 221864 222679 317 - . . scaffold447 GLEAN mRNA 216035 225243 0.990731 + . ID=CGI_10014225; scaffold1024 WUBlastX LTR_Gypsy 990326 990838 252 + . . scaffold1024 GLEAN mRNA 986108 994171 0.999235 - . ID=CGI_10028555; scaffold1788 WUBlastX DNA_Maverick 57161 57691 134 - . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold1757 WUBlastX DNA_Academ 42988 43464 292 - . . scaffold1757 GLEAN mRNA 39979 43464 0.907643 - . ID=CGI_10005112; scaffold1757 WUBlastX DNA_Academ 43472 43506 292 - . . scaffold1757 GLEAN mRNA 43472 43939 0.579796 - . ID=CGI_10005113; scaffold43964 WUBlastX LINE_Penelope 339503 340153 209 + . . scaffold43964 GLEAN mRNA 338636 342902 1 + . ID=CGI_10014661; scaffold40614 WUBlastX LTR_DIRS 64043 64543 283 - . . scaffold40614 GLEAN mRNA 56089 69167 0.972217 + . ID=CGI_10004259; scaffold1123 WUBlastX LINE_RTE-BovB 14301 14729 153 + . . scaffold1123 GLEAN mRNA 4950 19691 0.554793 + . ID=CGI_10018729; scaffold1578 WUBlastX LTR_Pao 65362 65520 23 + . . scaffold1578 GLEAN mRNA 44226 72498 0.998909 - . ID=CGI_10008160; scaffold58 WUBlastX LINE_L2 31067 31948 332 + . . scaffold58 GLEAN mRNA 27366 37042 1 - . ID=CGI_10023129; scaffold43302 WUBlastX DNA_PiggyBac 60345 60905 162 + . . scaffold43302 GLEAN mRNA 44692 96293 0.992844 + . ID=CGI_10009758; scaffold815 WUBlastX LINE_RTE-X 7853 8206 75 + . . scaffold815 GLEAN mRNA 3623 27508 0.999835 - . ID=CGI_10001932; scaffold1512 WUBlastX LTR_Gypsy 103903 104904 435 - . . scaffold1512 GLEAN mRNA 103804 112617 0.999842 - . ID=CGI_10019851; C29438 WUBlastX LINE_RTE-X 4058 4435 112 + . . C29438 GLEAN mRNA 533 5889 1 + . ID=CGI_10000534; scaffold409 WUBlastX DNA_TcMar-Marin 60242 60427 96 + . . scaffold409 GLEAN mRNA 51142 66968 0.990811 + . ID=CGI_10004317; scaffold409 WUBlastX DNA_TcMar-Marin 60555 60911 168 + . . scaffold409 GLEAN mRNA 51142 66968 0.990811 + . ID=CGI_10004317; scaffold409 WUBlastX DNA_TcMar-Marin 61093 61497 234 + . . scaffold409 GLEAN mRNA 51142 66968 0.990811 + . ID=CGI_10004317; scaffold1838 WUBlastX LINE_RTE-X 365710 367221 424 + . . scaffold1838 GLEAN mRNA 361613 368125 0.631432 + . ID=CGI_10014266; scaffold271 WUBlastX LINE_CR1-L2 477537 477842 31 + . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold22 WUBlastX LTR_Pao 1072854 1073057 69 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1074147 1074419 51 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold1799 WUBlastX LTR_Ngaro 58772 58969 75 - . . scaffold1799 GLEAN mRNA 46929 66946 0.999949 - . ID=CGI_10003631; scaffold1799 WUBlastX LTR_Ngaro 59240 59566 229 - . . scaffold1799 GLEAN mRNA 46929 66946 0.999949 - . ID=CGI_10003631; scaffold1600 WUBlastX LINE_RTE-BovB 194965 196134 756 + . . scaffold1600 GLEAN mRNA 182749 197532 0.996574 - . ID=CGI_10013039; scaffold36 WUBlastX LTR_Gypsy 2969 3130 61 + . . scaffold36 GLEAN mRNA 2519 8438 0.614104 + . ID=CGI_10001028; scaffold451 WUBlastX LTR_Gypsy 66694 66807 31 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold756 WUBlastX LTR_Gypsy 352911 353207 28 - . . scaffold756 GLEAN mRNA 341736 353437 0.789635 - . ID=CGI_10016464; scaffold814 WUBlastX LTR_Ngaro 86503 88095 813 - . . scaffold814 GLEAN mRNA 83997 88485 0.997298 + . ID=CGI_10008194; scaffold588 WUBlastX LTR_DIRS 414607 415302 388 + . . scaffold588 GLEAN mRNA 413724 423614 0.849231 + . ID=CGI_10016228; scaffold588 WUBlastX LTR_DIRS 415286 416479 409 + . . scaffold588 GLEAN mRNA 413724 423614 0.849231 + . ID=CGI_10016228; scaffold1838 WUBlastX LINE_RTE-X 333962 335248 461 - . . scaffold1838 GLEAN mRNA 332958 349598 0.563165 + . ID=CGI_10014264; scaffold44064 WUBlastX LINE_CR1 214815 215351 21 + . . scaffold44064 GLEAN mRNA 201756 215782 0.297034 - . ID=CGI_10016763; scaffold794 WUBlastX DNA_Harbinger 263259 263363 30 + . . scaffold794 GLEAN mRNA 251355 264307 1 + . ID=CGI_10017152; scaffold1138 WUBlastX DNA_Harbinger 296461 296673 73 + . . scaffold1138 GLEAN mRNA 292871 298316 0.998782 - . ID=CGI_10015377; scaffold425 WUBlastX DNA_IS4EU 127016 127192 57 + . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold1616 WUBlastX LINE_L1-Tx1 73015 73506 44 - . . scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; scaffold146 WUBlastX LINE_Penelope 643747 644151 23 - . . scaffold146 GLEAN mRNA 638309 652967 0.499837 - . ID=CGI_10024916; scaffold40080 WUBlastX LINE_RTE-BovB 24649 25263 45 + . . scaffold40080 GLEAN mRNA 23516 25927 0.997813 - . ID=CGI_10003844; scaffold37148 WUBlastX LINE_RTE-BovB 29429 29527 21 + . . scaffold37148 GLEAN mRNA 9385 30637 0.645987 - . ID=CGI_10002291; scaffold36808 WUBlastX LINE_RTE-X 35358 35486 40 + . . scaffold36808 GLEAN mRNA 30018 36587 1 - . ID=CGI_10002147; scaffold421 WUBlastX LINE_RTE-X 247404 247622 64 - . . scaffold421 GLEAN mRNA 232502 254015 0.999281 - . ID=CGI_10012158; scaffold678 WUBlastX LINE_RTE-X 225118 225375 55 - . . scaffold678 GLEAN mRNA 217063 237953 0.926398 - . ID=CGI_10026343; scaffold43964 WUBlastX LINE_RTE-X 134806 135075 37 - . . scaffold43964 GLEAN mRNA 134421 152513 0.996559 - . ID=CGI_10014643; scaffold1440 WUBlastX DNA_Maverick 49099 49173 23 - . . scaffold1440 GLEAN mRNA 46324 69343 0.667435 - . ID=CGI_10008354; scaffold395 WUBlastX LINE_R1 88649 88789 20 + . . scaffold395 GLEAN mRNA 85082 89781 0.998176 + . ID=CGI_10013969; scaffold58 WUBlastX DNA_TcMar-Marin 564678 564866 64 - . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; scaffold784 WUBlastX DNA_TcMar-Tc1 908143 908385 75 - . . scaffold784 GLEAN mRNA 903046 922274 0.999676 + . ID=CGI_10024450; scaffold1024 WUBlastX LINE_L1-Tx1 1140780 1140971 41 + . . scaffold1024 GLEAN mRNA 1112754 1144737 0.704183 + . ID=CGI_10028569; scaffold22 WUBlastX DNA_TcMar-Marin 90329 90520 51 + . . scaffold22 GLEAN mRNA 89502 123774 0.856288 - . ID=CGI_10028828; scaffold22 WUBlastX DNA_TcMar-Marin 90897 90992 27 + . . scaffold22 GLEAN mRNA 89502 123774 0.856288 - . ID=CGI_10028828; scaffold102 WUBlastX LTR_Gypsy 1096574 1096699 35 + . . scaffold102 GLEAN mRNA 1095942 1101722 0.998596 + . ID=CGI_10028470; scaffold39120 WUBlastX LTR_Ngaro 46014 46286 81 - . . scaffold39120 GLEAN mRNA 36514 50111 0.858496 + . ID=CGI_10003188; scaffold1719 WUBlastX LTR_Gypsy 190659 190697 30 + . . scaffold1719 GLEAN mRNA 177172 199114 0.99732 - . ID=CGI_10014281; scaffold41472 WUBlastX DNA_Harbinger 15041 15217 54 + . . scaffold41472 GLEAN mRNA 5767 21457 0.999674 - . ID=CGI_10005140; scaffold44054 WUBlastX LINE_RTE-X 307454 307654 67 - . . scaffold44054 GLEAN mRNA 306696 317315 0.999734 + . ID=CGI_10016171; scaffold34202 WUBlastX LINE_RTE-X 9773 9949 49 + . . scaffold34202 GLEAN mRNA 527 10844 1 - . ID=CGI_10001227; scaffold392 WUBlastX LINE_RTE-X 341965 342178 57 - . . scaffold392 GLEAN mRNA 334083 342178 0.54474 + . ID=CGI_10024214; scaffold393 WUBlastX DNA_TcMar-Tc1 349329 349607 72 + . . scaffold393 GLEAN mRNA 346842 359147 0.976322 + . ID=CGI_10026879; scaffold393 WUBlastX DNA_TcMar-Tc1 351207 351485 72 + . . scaffold393 GLEAN mRNA 346842 359147 0.976322 + . ID=CGI_10026879; scaffold583 WUBlastX DNA_Sola 473798 474034 88 - . . scaffold583 GLEAN mRNA 471956 505704 0.559717 + . ID=CGI_10023626; scaffold43920 WUBlastX DNA_TcMar-Tc1 261043 261372 34 + . . scaffold43920 GLEAN mRNA 253407 262803 0.999991 + . ID=CGI_10013995; scaffold471 WUBlastX LINE_CR1-L2 199505 199708 50 + . . scaffold471 GLEAN mRNA 193246 236257 0.137865 + . ID=CGI_10027007; scaffold257 WUBlastX LTR_DIRS 1604995 1605258 77 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold38374 WUBlastX LTR_Ngaro 8427 8516 26 + . . scaffold38374 GLEAN mRNA 8302 17987 0.957619 + . ID=CGI_10002746; scaffold191 WUBlastX LINE_Jockey 555062 555301 40 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold707 WUBlastX LTR_Gypsy 40844 41017 109 - . . scaffold707 GLEAN mRNA 28186 50322 0.998251 + . ID=CGI_10007721; scaffold413 WUBlastX LTR_Gypsy 553284 553412 20 + . . scaffold413 GLEAN mRNA 553173 557512 0.824889 + . ID=CGI_10022810; scaffold1256 WUBlastX LTR_Ngaro 90459 90830 43 + . . scaffold1256 GLEAN mRNA 90444 103764 0.997922 + . ID=CGI_10005430; scaffold1256 WUBlastX LTR_Ngaro 91626 91703 31 + . . scaffold1256 GLEAN mRNA 90444 103764 0.997922 + . ID=CGI_10005430; scaffold912 WUBlastX LINE_L1-Tx1 36263 36445 93 - . . scaffold912 GLEAN mRNA 34749 48869 0.492255 - . ID=CGI_10002926; scaffold1352 WUBlastX LINE_RTE 402972 403022 24 + . . scaffold1352 GLEAN mRNA 400458 408667 0.333165 + . ID=CGI_10018425; scaffold508 WUBlastX LTR_Gypsy 16294 17358 80 - . . scaffold508 GLEAN mRNA 12073 17406 0.968836 - . ID=CGI_10011191; scaffold1401 WUBlastX LINE_L2 6338 6619 84 - . . scaffold1401 GLEAN mRNA 431 6619 0.997038 - . ID=CGI_10001278; scaffold1599 WUBlastX DNA_IS4EU 558205 558291 39 + . . scaffold1599 GLEAN mRNA 554525 590190 0.924419 + . ID=CGI_10027152; scaffold935 WUBlastX DNA_TcMar-Tc2 8095 8298 94 + . . scaffold935 GLEAN mRNA 8095 8319 0.998439 + . ID=CGI_10005288; scaffold1149 WUBlastX LINE_RTE-X 164412 164639 77 + . . scaffold1149 GLEAN mRNA 149088 177869 0.31262 + . ID=CGI_10023454; scaffold43842 WUBlastX LINE_L2 192147 192671 91 - . . scaffold43842 GLEAN mRNA 186219 196229 0.99996 + . ID=CGI_10013104; scaffold38058 WUBlastX LTR_Gypsy 5416 5667 86 - . . scaffold38058 GLEAN mRNA 3486 8173 0.999159 - . ID=CGI_10002595; scaffold1121 WUBlastX DNA_hAT-Tip100 140767 140970 98 - . . scaffold1121 GLEAN mRNA 136074 147948 0.722367 - . ID=CGI_10006507; scaffold1036 WUBlastX DNA_Kolobok-IS4 69276 69509 110 - . . scaffold1036 GLEAN mRNA 62334 73775 0.755696 - . ID=CGI_10019943; scaffold1247 WUBlastX LINE_L1-Tx1 112751 113146 83 + . . scaffold1247 GLEAN mRNA 96036 115392 0.95838 - . ID=CGI_10008945; scaffold392 WUBlastX DNA_Kolobok 895627 896070 30 + . . scaffold392 GLEAN mRNA 895046 896088 1 + . ID=CGI_10024238; scaffold1462 WUBlastX LINE_RTE-BovB 306593 306739 70 + . . scaffold1462 GLEAN mRNA 305995 331618 0.999054 - . ID=CGI_10014383; scaffold509 WUBlastX LINE_RTE-BovB 206474 206647 41 - . . scaffold509 GLEAN mRNA 180574 211213 0.998586 - . ID=CGI_10018644; scaffold992 WUBlastX LINE_RTE-X 32455 32685 65 + . . scaffold992 GLEAN mRNA 31527 46122 0.937041 - . ID=CGI_10007504; scaffold986 WUBlastX LINE_Jockey 233180 233962 99 - . . scaffold986 GLEAN mRNA 229802 234961 0.889891 - . ID=CGI_10009965; scaffold1028 WUBlastX LINE_RTE-X 42039 42266 21 + . . scaffold1028 GLEAN mRNA 38359 105235 0.597726 - . ID=CGI_10009718; scaffold419 WUBlastX DNA_PiggyBac 39656 39910 129 + . . scaffold419 GLEAN mRNA 39110 43712 0.992133 + . ID=CGI_10028318; scaffold586 WUBlastX LINE_RTE-X 178005 178190 94 - . . scaffold586 GLEAN mRNA 158543 182219 0.249413 - . ID=CGI_10018000; scaffold865 WUBlastX LTR_Ngaro 19112 19837 101 - . . scaffold865 GLEAN mRNA 7384 21120 0.465325 - . ID=CGI_10002639; scaffold43660 WUBlastX LTR_Ngaro 245924 246067 109 + . . scaffold43660 GLEAN mRNA 243562 254433 0.99966 - . ID=CGI_10011671; scaffold193 WUBlastX LTR_Gypsy-Cigr 248508 248777 75 - . . scaffold193 GLEAN mRNA 245779 268914 0.906792 - . ID=CGI_10015232; scaffold1659 WUBlastX DNA_Harbinger 6608 6754 24 + . . scaffold1659 GLEAN mRNA 4365 18372 0.650917 + . ID=CGI_10001326; scaffold42850 WUBlastX LINE_RTE-X 10726 11046 105 + . . scaffold42850 GLEAN mRNA 3662 13171 0.999996 + . ID=CGI_10007918; scaffold162 WUBlastX LTR_Gypsy 276242 276838 121 - . . scaffold162 GLEAN mRNA 254328 277132 0.643433 - . ID=CGI_10014094; scaffold509 WUBlastX LINE_RTE-BovB 206647 206808 54 - . . scaffold509 GLEAN mRNA 180574 211213 0.998586 - . ID=CGI_10018644; scaffold210 WUBlastX LINE_RTE-X 148390 148797 106 + . . scaffold210 GLEAN mRNA 130765 152251 0.999676 - . ID=CGI_10015883; scaffold1663 WUBlastX LINE_L1-Tx1 3811 4365 100 + . . scaffold1663 GLEAN mRNA 2082 14069 0.985105 + . ID=CGI_10009862; scaffold38626 WUBlastX LINE_CR1 27421 27912 143 - . . scaffold38626 GLEAN mRNA 19577 33145 1 - . ID=CGI_10002868; scaffold43200 WUBlastX LINE_R2-Hero 123609 123815 70 + . . scaffold43200 GLEAN mRNA 98578 129296 0.928438 + . ID=CGI_10009329; scaffold1873 WUBlastX LINE_L1-Tx1 64771 65220 103 + . . scaffold1873 GLEAN mRNA 42995 66497 0.656652 + . ID=CGI_10009291; scaffold760 WUBlastX LINE_CR1 127593 127637 20 + . . scaffold760 GLEAN mRNA 117770 147032 0.706686 + . ID=CGI_10023976; scaffold413 WUBlastX LTR_Pao 613585 613641 30 + . . scaffold413 GLEAN mRNA 608859 620642 0.999023 - . ID=CGI_10022819; scaffold413 WUBlastX LTR_Pao 613585 613641 30 + . . scaffold413 GLEAN mRNA 613461 617471 1 + . ID=CGI_10022820; scaffold413 WUBlastX LTR_Pao 613869 614033 146 + . . scaffold413 GLEAN mRNA 608859 620642 0.999023 - . ID=CGI_10022819; scaffold413 WUBlastX LTR_Pao 613869 614033 146 + . . scaffold413 GLEAN mRNA 613461 617471 1 + . ID=CGI_10022820; scaffold26 WUBlastX LTR_Gypsy 38370 38705 150 - . . scaffold26 GLEAN mRNA 37184 39443 0.783788 + . ID=CGI_10002298; scaffold1423 WUBlastX LTR_Ngaro 728530 728958 95 - . . scaffold1423 GLEAN mRNA 702823 732700 0.440207 - . ID=CGI_10025438; scaffold99 WUBlastX DNA_IS4EU 463138 463443 117 - . . scaffold99 GLEAN mRNA 460652 481021 0.928915 - . ID=CGI_10021208; scaffold754 WUBlastX DNA_IS4EU 140996 141523 173 + . . scaffold754 GLEAN mRNA 139769 141980 1 - . ID=CGI_10014067; scaffold619 WUBlastX LINE_RTE-X 778840 779217 118 - . . scaffold619 GLEAN mRNA 775777 792970 0.999676 - . ID=CGI_10025785; scaffold1884 WUBlastX LINE_RTE-BovB 141424 142677 897 - . . scaffold1884 GLEAN mRNA 133392 150395 0.998261 + . ID=CGI_10012014; scaffold274 WUBlastX LINE_L2 47572 48198 143 + . . scaffold274 GLEAN mRNA 47250 68838 0.971857 - . ID=CGI_10017009; scaffold40786 WUBlastX LINE_L2 7257 7763 128 + . . scaffold40786 GLEAN mRNA 7257 8429 0.999999 + . ID=CGI_10004439; scaffold1704 WUBlastX LINE_RTE-X 148939 149178 29 + . . scaffold1704 GLEAN mRNA 130337 165249 0.994715 + . ID=CGI_10010170; scaffold1672 WUBlastX LTR_DIRS 58431 60407 1331 + . . scaffold1672 GLEAN mRNA 57333 81461 0.999231 + . ID=CGI_10004942; scaffold6 WUBlastX LINE_LOA 243911 243991 25 - . . scaffold6 GLEAN mRNA 243521 244840 0.993546 - . ID=CGI_10022303; scaffold163 WUBlastX LTR_Gypsy 476434 476898 167 + . . scaffold163 GLEAN mRNA 440738 483510 0.311673 + . ID=CGI_10018629; scaffold1009 WUBlastX LINE_RTE-BovB 1404015 1404338 121 - . . scaffold1009 GLEAN mRNA 1385958 1409839 0.363333 + . ID=CGI_10028796; scaffold38532 WUBlastX LTR_Ngaro 55749 56339 171 - . . scaffold38532 GLEAN mRNA 48785 56819 0.999998 - . ID=CGI_10002832; scaffold448 WUBlastX DNA_Sola 309246 309731 205 + . . scaffold448 GLEAN mRNA 309246 309755 0.48146 + . ID=CGI_10024939; scaffold1884 WUBlastX LINE_RTE-BovB 141281 141418 59 - . . scaffold1884 GLEAN mRNA 133392 150395 0.998261 + . ID=CGI_10012014; scaffold579 WUBlastX LTR_Pao 213878 214195 44 + . . scaffold579 GLEAN mRNA 193436 221323 0.863149 + . ID=CGI_10011264; scaffold1101 WUBlastX LINE_L2 151037 151522 27 - . . scaffold1101 GLEAN mRNA 141921 154245 0.479315 + . ID=CGI_10023014; scaffold457 WUBlastX LINE_RTE 365264 366107 48 + . . scaffold457 GLEAN mRNA 365264 371451 0.499678 - . ID=CGI_10014542; scaffold37772 WUBlastX DNA_Maverick 22815 22928 45 - . . scaffold37772 GLEAN mRNA 22803 28480 0.678428 - . ID=CGI_10002493; scaffold42880 WUBlastX LTR_Ngaro 29364 29522 97 - . . scaffold42880 GLEAN mRNA 29055 29522 0.999999 - . ID=CGI_10007997; scaffold242 WUBlastX LTR_Pao 75970 76335 84 + . . scaffold242 GLEAN mRNA 75832 84666 0.771995 + . ID=CGI_10007083; C35840 WUBlastX DNA_Harbinger 1641 1865 66 - . . C35840 GLEAN mRNA 655 3933 0.500738 - . ID=CGI_10001630; scaffold1588 WUBlastX LINE_RTE-X 71855 72454 203 + . . scaffold1588 GLEAN mRNA 56027 117187 0.840099 - . ID=CGI_10014772; scaffold253 WUBlastX LTR_Gypsy 2653 3465 118 - . . scaffold253 GLEAN mRNA 2368 20050 0.999351 + . ID=CGI_10003487; scaffold1440 WUBlastX DNA_Maverick 48557 49042 218 - . . scaffold1440 GLEAN mRNA 46324 69343 0.667435 - . ID=CGI_10008354; scaffold854 WUBlastX LINE_RTE-X 197222 197983 214 - . . scaffold854 GLEAN mRNA 197153 198070 0.635503 - . ID=CGI_10022241; scaffold1561 WUBlastX LINE_L2 17689 18333 110 - . . scaffold1561 GLEAN mRNA 6278 19988 0.999234 + . ID=CGI_10005689; scaffold1714 WUBlastX LINE_L2 312465 312635 20 - . . scaffold1714 GLEAN mRNA 306589 325335 0.999557 + . ID=CGI_10013680; scaffold599 WUBlastX DNA_IS4EU 468832 469437 232 + . . scaffold599 GLEAN mRNA 453980 472237 0.999985 - . ID=CGI_10021725; scaffold599 WUBlastX DNA_IS4EU 468832 469437 232 + . . scaffold599 GLEAN mRNA 456252 477114 0.953927 + . ID=CGI_10021726; scaffold833 WUBlastX DNA_Academ 469368 469468 174 - . . scaffold833 GLEAN mRNA 463710 469468 0.999591 - . ID=CGI_10016746; scaffold854 WUBlastX LINE_L1-Tx1 597182 597814 129 + . . scaffold854 GLEAN mRNA 593945 607422 0.999735 + . ID=CGI_10022261; scaffold36642 WUBlastX LINE_L1-Tx1 3333 3764 137 - . . scaffold36642 GLEAN mRNA 976 27657 0.999986 + . ID=CGI_10002025; scaffold145 WUBlastX LINE_RTE-BovB 1137375 1137575 41 - . . scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold145 WUBlastX LINE_RTE-BovB 1137736 1138227 131 - . . scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold911 WUBlastX LTR_Gypsy 95333 95464 61 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold1138 WUBlastX DNA_P 189525 190187 104 + . . scaffold1138 GLEAN mRNA 183755 192154 0.999676 - . ID=CGI_10015373; scaffold1138 WUBlastX DNA_P 189525 190187 104 + . . scaffold1138 GLEAN mRNA 186841 191383 0.716431 + . ID=CGI_10015374; scaffold36526 WUBlastX LINE_L1-Tx1 21067 21417 47 - . . scaffold36526 GLEAN mRNA 10575 29087 0.999676 + . ID=CGI_10002008; scaffold213 WUBlastX DNA_TcMar-Tc1 176046 176096 48 - . . scaffold213 GLEAN mRNA 155081 183799 0.877289 - . ID=CGI_10007552; scaffold683 WUBlastX LINE_RTE-X 81868 82083 36 - . . scaffold683 GLEAN mRNA 80657 98109 0.999674 + . ID=CGI_10010356; scaffold588 WUBlastX DNA_Harbinger 23489 23953 112 + . . scaffold588 GLEAN mRNA 7475 24618 0.999942 + . ID=CGI_10016208; scaffold588 WUBlastX DNA_Harbinger 23030 23107 55 + . . scaffold588 GLEAN mRNA 7475 24618 0.999942 + . ID=CGI_10016208; scaffold588 WUBlastX DNA_Harbinger 23119 23352 178 + . . scaffold588 GLEAN mRNA 7475 24618 0.999942 + . ID=CGI_10016208; scaffold550 WUBlastX DNA_Academ 257392 257961 275 - . . scaffold550 GLEAN mRNA 257305 257961 0.999663 - . ID=CGI_10012495; scaffold550 WUBlastX DNA_Academ 257957 257961 87 - . . scaffold550 GLEAN mRNA 257305 257961 0.999663 - . ID=CGI_10012495; scaffold1426 WUBlastX DNA_hAT-Tip100 6015 6419 96 + . . scaffold1426 GLEAN mRNA 415 27976 0.990953 - . ID=CGI_10003025; scaffold1426 WUBlastX DNA_hAT-Tip100 6611 6880 131 + . . scaffold1426 GLEAN mRNA 415 27976 0.990953 - . ID=CGI_10003025; scaffold1426 WUBlastX DNA_hAT-Tip100 6880 7038 63 + . . scaffold1426 GLEAN mRNA 415 27976 0.990953 - . ID=CGI_10003025; scaffold1426 WUBlastX DNA_hAT-Tip100 7133 7483 44 + . . scaffold1426 GLEAN mRNA 415 27976 0.990953 - . ID=CGI_10003025; scaffold610 WUBlastX DNA_IS4EU 105027 105155 51 + . . scaffold610 GLEAN mRNA 101538 106463 0.827114 + . ID=CGI_10021088; scaffold1589 WUBlastX LINE_L1-Tx1 380628 381257 301 + . . scaffold1589 GLEAN mRNA 370243 390217 0.643157 + . ID=CGI_10024115; C31910 WUBlastX DNA_TcMar-Tc2 7876 8388 358 - . . C31910 GLEAN mRNA 5235 9075 0.998023 - . ID=CGI_10000814; scaffold43836 WUBlastX LINE_RTE-X 248439 248681 120 + . . scaffold43836 GLEAN mRNA 242579 251086 0.650911 - . ID=CGI_10013062; scaffold221 WUBlastX DNA_Harbinger 80067 80156 26 - . . scaffold221 GLEAN mRNA 79166 80425 0.999137 - . ID=CGI_10008344; scaffold221 WUBlastX DNA_Harbinger 80246 80425 140 - . . scaffold221 GLEAN mRNA 79166 80425 0.999137 - . ID=CGI_10008344; scaffold1788 WUBlastX DNA_Maverick 57248 57763 219 - . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold549 WUBlastX LINE_RTE-BovB 59385 59585 153 + . . scaffold549 GLEAN mRNA 50843 62768 0.999759 - . ID=CGI_10004104; scaffold549 WUBlastX LINE_RTE-BovB 59385 59585 153 + . . scaffold549 GLEAN mRNA 31331 63327 0.976872 + . ID=CGI_10004103; scaffold1343 WUBlastX DNA_Maverick 99084 100607 238 + . . scaffold1343 GLEAN mRNA 94192 115140 0.999675 + . ID=CGI_10005048; scaffold1672 WUBlastX LTR_DIRS 57963 60122 382 + . . scaffold1672 GLEAN mRNA 57333 81461 0.999231 + . ID=CGI_10004942; scaffold610 WUBlastX LTR_Ngaro 279838 280491 474 - . . scaffold610 GLEAN mRNA 278888 282376 0.9996 + . ID=CGI_10021107; scaffold1402 WUBlastX LINE_CR1 342167 343591 455 + . . scaffold1402 GLEAN mRNA 333924 347546 0.999947 - . ID=CGI_10017589; scaffold43388 WUBlastX LINE_RTE-X 230904 232643 371 + . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold531 WUBlastX DNA_Academ 25026 25514 195 - . . scaffold531 GLEAN mRNA 22748 29196 0.526203 - . ID=CGI_10014486; scaffold531 WUBlastX DNA_Academ 25514 26137 358 - . . scaffold531 GLEAN mRNA 22748 29196 0.526203 - . ID=CGI_10014486; scaffold531 WUBlastX DNA_Academ 26386 26550 125 - . . scaffold531 GLEAN mRNA 22748 29196 0.526203 - . ID=CGI_10014486; scaffold206 WUBlastX LTR_Gypsy 80148 80603 129 + . . scaffold206 GLEAN mRNA 57948 87960 0.702119 + . ID=CGI_10011372; scaffold363 WUBlastX DNA_Academ 109056 109295 97 - . . scaffold363 GLEAN mRNA 95165 111779 0.789891 - . ID=CGI_10019289; scaffold363 WUBlastX DNA_Academ 109348 110097 172 - . . scaffold363 GLEAN mRNA 95165 111779 0.789891 - . ID=CGI_10019289; scaffold363 WUBlastX DNA_Academ 110902 111057 32 - . . scaffold363 GLEAN mRNA 95165 111779 0.789891 - . ID=CGI_10019289; scaffold655 WUBlastX LINE_CR1-L2 316551 316769 22 - . . scaffold655 GLEAN mRNA 288551 322246 0.783926 + . ID=CGI_10014958; scaffold655 WUBlastX LINE_CR1-L2 319781 320056 22 - . . scaffold655 GLEAN mRNA 288551 322246 0.783926 + . ID=CGI_10014958; scaffold1899 WUBlastX LINE_R2-Hero 257135 258826 628 - . . scaffold1899 GLEAN mRNA 252311 263688 0.999676 - . ID=CGI_10013616; scaffold1899 WUBlastX LINE_R2-Hero 257135 258826 628 - . . scaffold1899 GLEAN mRNA 252505 265918 0.435071 + . ID=CGI_10013617; scaffold142 WUBlastX LINE_CR1 236693 237352 249 + . . scaffold142 GLEAN mRNA 226750 254431 0.969071 + . ID=CGI_10026760; scaffold35712 WUBlastX LINE_RTE-X 5777 6160 144 + . . scaffold35712 GLEAN mRNA 3858 24173 0.47659 + . ID=CGI_10001589; scaffold35712 WUBlastX LINE_RTE-X 6754 7506 358 + . . scaffold35712 GLEAN mRNA 3858 24173 0.47659 + . ID=CGI_10001589; scaffold419 WUBlastX LTR_Gypsy 684526 684798 56 - . . scaffold419 GLEAN mRNA 671072 685906 0.998967 - . ID=CGI_10028358; scaffold44098 WUBlastX LINE_CR1 194551 195573 431 + . . scaffold44098 GLEAN mRNA 188555 213785 0.544557 + . ID=CGI_10017708; scaffold40282 WUBlastX LTR_Gypsy 76007 76216 46 - . . scaffold40282 GLEAN mRNA 56091 83549 0.539379 + . ID=CGI_10004002; scaffold162 WUBlastX LINE_L1-Tx1 51201 52019 469 - . . scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; scaffold162 WUBlastX LINE_L1-Tx1 51947 52180 172 - . . scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; scaffold1831 WUBlastX LINE_RTE-X 26435 26674 136 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold36450 WUBlastX RC_Helitron 4845 5942 31 + . . scaffold36450 GLEAN mRNA 3992 12302 0.990019 + . ID=CGI_10001979; scaffold34106 WUBlastX LTR_DIRS 12454 12867 198 + . . scaffold34106 GLEAN mRNA 1207 14937 0.504518 - . ID=CGI_10001211; scaffold1032 WUBlastX LINE_RTE-X 707889 708191 232 + . . scaffold1032 GLEAN mRNA 707458 710864 0.590104 - . ID=CGI_10021705; scaffold1032 WUBlastX LINE_RTE-X 708203 708715 285 + . . scaffold1032 GLEAN mRNA 707458 710864 0.590104 - . ID=CGI_10021705; scaffold1032 WUBlastX LINE_RTE-X 709520 710482 241 + . . scaffold1032 GLEAN mRNA 707458 710864 0.590104 - . ID=CGI_10021705; scaffold583 WUBlastX LINE_CR1-L2 388212 388433 23 - . . scaffold583 GLEAN mRNA 365612 390201 0.692695 - . ID=CGI_10023621; scaffold40182 WUBlastX LINE_L2 17597 17698 20 + . . scaffold40182 GLEAN mRNA 7136 27863 0.492081 + . ID=CGI_10003936; scaffold1866 WUBlastX LINE_L2 221135 221407 42 - . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold44008 WUBlastX DNA_hAT 353929 354411 41 + . . scaffold44008 GLEAN mRNA 353787 363820 0.499838 + . ID=CGI_10015300; scaffold973 WUBlastX DNA_P 480774 480944 34 + . . scaffold973 GLEAN mRNA 459812 495219 0.606957 - . ID=CGI_10021557; scaffold983 WUBlastX DNA_NOF 247561 247995 32 + . . scaffold983 GLEAN mRNA 244830 248843 1 - . ID=CGI_10014030; scaffold33980 WUBlastX LTR_Gypsy 9782 10102 27 - . . scaffold33980 GLEAN mRNA 2151 15835 0.664854 + . ID=CGI_10001168; scaffold752 WUBlastX LTR_ERV1 236204 236740 21 + . . scaffold752 GLEAN mRNA 235985 237469 0.999984 + . ID=CGI_10010044; scaffold833 WUBlastX LINE_RTE-BovB 240516 240821 61 + . . scaffold833 GLEAN mRNA 240516 240821 0.96892 + . ID=CGI_10016737; scaffold41022 WUBlastX LINE_RTE-X 97718 98002 35 - . . scaffold41022 GLEAN mRNA 87016 104666 0.650358 + . ID=CGI_10004637; scaffold1551 WUBlastX LTR_Gypsy-Cigr 55022 55159 84 - . . scaffold1551 GLEAN mRNA 48041 86336 0.263167 + . ID=CGI_10011471; scaffold1154 WUBlastX LTR_Gypsy 1155101 1155307 46 + . . scaffold1154 GLEAN mRNA 1155101 1155487 0.449004 + . ID=CGI_10026209; scaffold1575 WUBlastX RC_Helitron 62336 62560 88 - . . scaffold1575 GLEAN mRNA 54747 64275 0.592949 - . ID=CGI_10004720; scaffold138 WUBlastX LINE_L1 75421 75717 49 - . . scaffold138 GLEAN mRNA 71718 76716 0.998636 - . ID=CGI_10008427; scaffold1009 WUBlastX LTR_Lenti 169952 170104 23 - . . scaffold1009 GLEAN mRNA 163164 171986 0.959931 - . ID=CGI_10028721; scaffold733 WUBlastX LTR_Gypsy 1019835 1019905 22 + . . scaffold733 GLEAN mRNA 1017652 1019905 0.995936 + . ID=CGI_10025901; scaffold1706 WUBlastX DNA_Kolobok 37786 37981 93 - . . scaffold1706 GLEAN mRNA 37786 56373 0.330403 - . ID=CGI_10003662; scaffold57 WUBlastX LINE_RTE-BovB 445811 445909 45 - . . scaffold57 GLEAN mRNA 444980 452251 1 + . ID=CGI_10020561; scaffold57 WUBlastX LINE_RTE-BovB 446209 446307 45 - . . scaffold57 GLEAN mRNA 444980 452251 1 + . ID=CGI_10020561; scaffold1322 WUBlastX LTR_Pao 409177 409376 91 - . . scaffold1322 GLEAN mRNA 394198 409376 0.999229 - . ID=CGI_10019477; scaffold1832 WUBlastX DNA_En-Spm 198351 198536 46 - . . scaffold1832 GLEAN mRNA 198351 200947 0.999463 - . ID=CGI_10018468; scaffold1623 WUBlastX RC_Helitron 14447 14926 106 + . . scaffold1623 GLEAN mRNA 2672 21645 0.211469 + . ID=CGI_10002853; scaffold1725 WUBlastX DNA_IS4EU 37415 37843 51 - . . scaffold1725 GLEAN mRNA 33815 37894 0.771905 - . ID=CGI_10004728; scaffold817 WUBlastX DNA_MuDR 47291 47389 42 - . . scaffold817 GLEAN mRNA 47004 50153 0.999225 - . ID=CGI_10008654; scaffold817 WUBlastX DNA_MuDR 47536 47769 33 - . . scaffold817 GLEAN mRNA 47004 50153 0.999225 - . ID=CGI_10008654; scaffold817 WUBlastX DNA_MuDR 47880 48005 59 - . . scaffold817 GLEAN mRNA 47004 50153 0.999225 - . ID=CGI_10008654; scaffold536 WUBlastX LINE_RTE-X 88569 88640 33 + . . scaffold536 GLEAN mRNA 68482 93233 0.999348 + . ID=CGI_10006670; C31130 WUBlastX LINE_RTE-BovB 6126 6275 44 + . . C31130 GLEAN mRNA 1615 7443 0.999998 - . ID=CGI_10000707; scaffold138 WUBlastX LINE_L1-Tx1 27793 28029 57 - . . scaffold138 GLEAN mRNA 800 34081 0.879441 + . ID=CGI_10008423; scaffold40114 WUBlastX LINE_CR1-L2 21571 21756 37 + . . scaffold40114 GLEAN mRNA 20826 33927 0.999548 + . ID=CGI_10003919; scaffold43076 WUBlastX LTR_Gypsy 195880 196272 122 - . . scaffold43076 GLEAN mRNA 186716 211039 0.795025 + . ID=CGI_10008770; scaffold450 WUBlastX LTR_Gypsy 79735 80106 109 - . . scaffold450 GLEAN mRNA 66067 80656 0.505252 - . ID=CGI_10010319; scaffold271 WUBlastX LINE_L1-Tx1 469491 469562 20 - . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold1018 WUBlastX LINE_RTE-X 262406 262579 58 - . . scaffold1018 GLEAN mRNA 242940 268764 0.606365 + . ID=CGI_10019762; scaffold1018 WUBlastX LINE_RTE-X 262557 262676 56 - . . scaffold1018 GLEAN mRNA 242940 268764 0.606365 + . ID=CGI_10019762; scaffold113 WUBlastX LINE_RTE-X 54343 54660 41 + . . scaffold113 GLEAN mRNA 53720 57757 0.859957 + . ID=CGI_10021283; scaffold1869 WUBlastX DNA_Sola 15390 15530 75 + . . scaffold1869 GLEAN mRNA 8009 37015 0.526029 - . ID=CGI_10009011; scaffold1869 WUBlastX DNA_Sola 15390 15530 75 + . . scaffold1869 GLEAN mRNA 11164 16956 0.999984 + . ID=CGI_10009012; scaffold184 WUBlastX DNA_PiggyBac 251800 251874 28 - . . scaffold184 GLEAN mRNA 248871 256134 0.689082 + . ID=CGI_10014799; scaffold43242 WUBlastX DNA_Kolobok 32583 32792 82 + . . scaffold43242 GLEAN mRNA 27154 33595 0.878599 + . ID=CGI_10009544; scaffold43576 WUBlastX DNA_TcMar-Pogo 216056 216415 136 + . . scaffold43576 GLEAN mRNA 197837 232524 1 - . ID=CGI_10011134; scaffold366 WUBlastX LTR_Gypsy 11652 11804 89 + . . scaffold366 GLEAN mRNA 509 12362 0.308663 - . ID=CGI_10007770; scaffold366 WUBlastX LTR_Gypsy 11652 11804 89 + . . scaffold366 GLEAN mRNA 4558 26262 1 + . ID=CGI_10007771; scaffold536 WUBlastX LINE_RTE-X 85710 85781 22 - . . scaffold536 GLEAN mRNA 68482 93233 0.999348 + . ID=CGI_10006670; scaffold206 WUBlastX DNA_En-Spm 128057 128494 57 - . . scaffold206 GLEAN mRNA 123903 131741 0.999975 - . ID=CGI_10011374; scaffold1221 WUBlastX LINE_L1-Tx1 523671 523994 115 + . . scaffold1221 GLEAN mRNA 522455 543272 0.967384 + . ID=CGI_10019749; scaffold40606 WUBlastX LINE_RTE-X 9324 9521 79 - . . scaffold40606 GLEAN mRNA 7541 35661 0.834284 + . ID=CGI_10004278; scaffold1028 WUBlastX LINE_RTE-X 42111 42278 43 + . . scaffold1028 GLEAN mRNA 38359 105235 0.597726 - . ID=CGI_10009718; scaffold370 WUBlastX LINE_L1-Tx1 839648 840127 65 - . . scaffold370 GLEAN mRNA 838405 846799 0.855201 + . ID=CGI_10025566; C36680 WUBlastX LINE_CR1 10021 10293 31 - . . C36680 GLEAN mRNA 2216 22548 0.727902 - . ID=CGI_10002070; scaffold57 WUBlastX LINE_RTE-X 192124 192510 142 - . . scaffold57 GLEAN mRNA 175786 215064 0.533671 + . ID=CGI_10020545; scaffold556 WUBlastX LTR_Pao 518 1060 1028 + . . scaffold556 GLEAN mRNA 518 1066 0.999999 + . ID=CGI_10016788; scaffold40114 WUBlastX LINE_L2 21758 21955 81 + . . scaffold40114 GLEAN mRNA 20826 33927 0.999548 + . ID=CGI_10003919; scaffold43624 WUBlastX LINE_L2 285044 285469 101 + . . scaffold43624 GLEAN mRNA 281450 291101 0.999421 - . ID=CGI_10011515; scaffold598 WUBlastX LTR_Ngaro 1493 3094 1034 + . . scaffold598 GLEAN mRNA 1303 4771 0.992797 + . ID=CGI_10001778; scaffold53 WUBlastX LINE_RTE-X 1125964 1128489 808 + . . scaffold53 GLEAN mRNA 1118540 1138631 0.654333 + . ID=CGI_10026699; scaffold1209 WUBlastX LINE_L2 20810 21298 122 - . . scaffold1209 GLEAN mRNA 16133 36287 0.961312 - . ID=CGI_10007964; scaffold514 WUBlastX LTR_DIRS 88173 88757 399 + . . scaffold514 GLEAN mRNA 67103 122805 0.383041 - . ID=CGI_10018346; scaffold514 WUBlastX LTR_DIRS 88778 89833 661 + . . scaffold514 GLEAN mRNA 67103 122805 0.383041 - . ID=CGI_10018346; scaffold3 WUBlastX LINE_CR1-L2 670243 670773 30 + . . scaffold3 GLEAN mRNA 666595 677011 1 + . ID=CGI_10027296; scaffold1066 WUBlastX LTR_Gypsy 169357 170625 176 + . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold681 WUBlastX LTR_DIRS 32264 32737 143 - . . scaffold681 GLEAN mRNA 27385 42751 0.999855 + . ID=CGI_10014717; scaffold619 WUBlastX LTR_Ngaro 483858 484256 22 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold630 WUBlastX LINE_RTE-X 86995 87288 105 + . . scaffold630 GLEAN mRNA 80549 90707 0.970045 - . ID=CGI_10018325; scaffold43878 WUBlastX LINE_L1-Tx1 33757 33948 24 - . . scaffold43878 GLEAN mRNA 19366 41477 0.131804 - . ID=CGI_10013710; scaffold36 WUBlastX LTR_Gypsy 2996 5128 1016 + . . scaffold36 GLEAN mRNA 2519 8438 0.614104 + . ID=CGI_10001028; scaffold1588 WUBlastX LINE_RTE-X 74325 74780 163 + . . scaffold1588 GLEAN mRNA 56027 117187 0.840099 - . ID=CGI_10014772; scaffold406 WUBlastX LINE_RTE-X 421815 422372 104 + . . scaffold406 GLEAN mRNA 402781 436007 0.999901 + . ID=CGI_10023847; scaffold490 WUBlastX DNA_TcMar-Fot1 117032 117196 61 - . . scaffold490 GLEAN mRNA 110595 119533 0.717521 + . ID=CGI_10009162; scaffold42840 WUBlastX LINE_RTE-X 139411 139779 180 + . . scaffold42840 GLEAN mRNA 134311 145100 0.999472 - . ID=CGI_10007836; scaffold422 WUBlastX LINE_L2 117827 118369 141 + . . scaffold422 GLEAN mRNA 114938 133622 0.999998 - . ID=CGI_10018795; scaffold41388 WUBlastX LINE_L2 55975 56430 166 - . . scaffold41388 GLEAN mRNA 55240 60308 0.999676 - . ID=CGI_10005014; scaffold1670 WUBlastX LINE_CR1 404146 404607 205 + . . scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; scaffold1052 WUBlastX LTR_DIRS 37764 38465 182 - . . scaffold1052 GLEAN mRNA 1917 38966 0.980203 - . ID=CGI_10005467; scaffold90 WUBlastX LTR_Gypsy 395099 396442 180 - . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold1862 WUBlastX DNA_Kolobok-IS4 659029 659691 173 + . . scaffold1862 GLEAN mRNA 655247 661635 1 - . ID=CGI_10021923; scaffold419 WUBlastX LINE_RTE-X 47463 48578 81 - . . scaffold419 GLEAN mRNA 46988 49900 0.999992 + . ID=CGI_10028319; scaffold90 WUBlastX LTR_Gypsy 395444 396163 235 - . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold513 WUBlastX LTR_Pao 11019 11354 247 + . . scaffold513 GLEAN mRNA 2113 39536 0.917684 + . ID=CGI_10022134; scaffold1771 WUBlastX LTR_Gypsy-Cigr 90425 94066 1830 - . . scaffold1771 GLEAN mRNA 88638 95441 0.521534 - . ID=CGI_10004387; scaffold524 WUBlastX LINE_CR1-L2 453923 453973 21 - . . scaffold524 GLEAN mRNA 445295 466161 1 + . ID=CGI_10016612; scaffold457 WUBlastX LINE_RTE-BovB 365718 366536 133 + . . scaffold457 GLEAN mRNA 365264 371451 0.499678 - . ID=CGI_10014542; scaffold1098 WUBlastX DNA_TcMar-Tc1 264953 265330 153 + . . scaffold1098 GLEAN mRNA 223579 266249 0.353937 - . ID=CGI_10010798; scaffold1054 WUBlastX DNA_Kolobok-IS4 279056 279715 282 - . . scaffold1054 GLEAN mRNA 264440 285046 0.889923 + . ID=CGI_10012963; scaffold1054 WUBlastX DNA_Kolobok-IS4 279056 279715 282 - . . scaffold1054 GLEAN mRNA 274617 283441 0.999237 - . ID=CGI_10012964; scaffold1803 WUBlastX LINE_RTE-X 36764 37684 194 - . . scaffold1803 GLEAN mRNA 35391 52757 0.995479 - . ID=CGI_10014040; scaffold370 WUBlastX LINE_L1-Tx1 65989 66957 91 - . . scaffold370 GLEAN mRNA 48035 69825 0.999273 - . ID=CGI_10025517; scaffold77 WUBlastX LTR_Gypsy 1453953 1454636 272 - . . scaffold77 GLEAN mRNA 1435771 1455368 0.401661 + . ID=CGI_10028040; scaffold1665 WUBlastX LINE_RTE-X 415713 416366 210 + . . scaffold1665 GLEAN mRNA 414201 417723 0.990268 - . ID=CGI_10015218; scaffold257 WUBlastX LTR_DIRS 1607670 1607789 23 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold365 WUBlastX DNA_Kolobok 293350 293604 150 + . . scaffold365 GLEAN mRNA 290837 296028 1 + . ID=CGI_10022726; scaffold365 WUBlastX DNA_Kolobok 294604 294744 48 + . . scaffold365 GLEAN mRNA 290837 296028 1 + . ID=CGI_10022726; scaffold370 WUBlastX DNA_hAT-hATw 843845 844747 34 + . . scaffold370 GLEAN mRNA 838405 846799 0.855201 + . ID=CGI_10025566; scaffold43146 WUBlastX LINE_L1-Tx1 196864 197607 221 + . . scaffold43146 GLEAN mRNA 193579 199513 0.963019 - . ID=CGI_10009047; scaffold1322 WUBlastX LTR_Ngaro 300080 300526 250 - . . scaffold1322 GLEAN mRNA 265135 302274 0.499623 + . ID=CGI_10019472; scaffold43818 WUBlastX LINE_RTE-X 330335 330691 50 + . . scaffold43818 GLEAN mRNA 325023 332374 0.596002 + . ID=CGI_10012778; scaffold814 WUBlastX LTR_Ngaro 85526 86416 290 - . . scaffold814 GLEAN mRNA 83997 88485 0.997298 + . ID=CGI_10008194; scaffold1024 WUBlastX DNA_PiggyBac 1067771 1069135 363 - . . scaffold1024 GLEAN mRNA 1067411 1070428 0.977799 - . ID=CGI_10028562; scaffold305 WUBlastX LINE_L1 140647 140859 92 + . . scaffold305 GLEAN mRNA 133464 157357 0.544675 - . ID=CGI_10019118; scaffold1578 WUBlastX LTR_Pao 66479 66550 47 + . . scaffold1578 GLEAN mRNA 44226 72498 0.998909 - . ID=CGI_10008160; scaffold43008 WUBlastX LINE_L1-Tx1 84205 84414 22 - . . scaffold43008 GLEAN mRNA 78684 87806 0.543465 - . ID=CGI_10008462; scaffold583 WUBlastX LINE_CR1 746558 747331 234 - . . scaffold583 GLEAN mRNA 741499 750992 0.999674 - . ID=CGI_10023643; scaffold583 WUBlastX LINE_CR1 746558 747331 234 - . . scaffold583 GLEAN mRNA 742000 755299 0.5 + . ID=CGI_10023644; scaffold168 WUBlastX DNA_PiggyBac 997759 999378 494 - . . scaffold168 GLEAN mRNA 995195 1004011 0.992438 - . ID=CGI_10025624; scaffold42790 WUBlastX LINE_Penelope 186125 186961 191 - . . scaffold42790 GLEAN mRNA 181485 188091 0.999947 - . ID=CGI_10007719; scaffold42790 WUBlastX LINE_Penelope 186970 187524 312 - . . scaffold42790 GLEAN mRNA 181485 188091 0.999947 - . ID=CGI_10007719; scaffold1299 WUBlastX LINE_RTE-BovB 139259 139771 137 - . . scaffold1299 GLEAN mRNA 132868 184987 0.923911 + . ID=CGI_10007586; scaffold1299 WUBlastX LINE_RTE-BovB 140606 141202 162 - . . scaffold1299 GLEAN mRNA 132868 184987 0.923911 + . ID=CGI_10007586; scaffold42096 WUBlastX DNA_Harbinger 107935 108855 586 - . . scaffold42096 GLEAN mRNA 96755 112781 0.947295 - . ID=CGI_10006165; scaffold42096 WUBlastX DNA_Harbinger 107935 108855 586 - . . scaffold42096 GLEAN mRNA 106698 118966 0.999659 + . ID=CGI_10006166; scaffold934 WUBlastX LINE_L1-Tx1 265466 265963 54 - . . scaffold934 GLEAN mRNA 262254 282098 1 - . ID=CGI_10015446; scaffold934 WUBlastX LINE_L1-Tx1 267071 268096 374 - . . scaffold934 GLEAN mRNA 262254 282098 1 - . ID=CGI_10015446; scaffold934 WUBlastX LTR_Ngaro 408108 408797 415 + . . scaffold934 GLEAN mRNA 385356 409492 0.99982 + . ID=CGI_10015451; scaffold934 WUBlastX LTR_Ngaro 408776 408925 119 + . . scaffold934 GLEAN mRNA 385356 409492 0.99982 + . ID=CGI_10015451; scaffold591 WUBlastX LTR_Ngaro 600996 601085 37 - . . scaffold591 GLEAN mRNA 577441 607957 0.997895 + . ID=CGI_10027576; scaffold1237 WUBlastX LTR_DIRS 258904 261156 662 + . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold1014 WUBlastX LINE_L1-Tx1 591569 592495 261 - . . scaffold1014 GLEAN mRNA 561207 594372 0.621641 - . ID=CGI_10020275; scaffold1014 WUBlastX LINE_L1-Tx1 592692 593300 385 - . . scaffold1014 GLEAN mRNA 561207 594372 0.621641 - . ID=CGI_10020275; scaffold400 WUBlastX LINE_CR1-L2 265617 266861 404 - . . scaffold400 GLEAN mRNA 262709 267661 0.544852 - . ID=CGI_10011440; scaffold1253 WUBlastX LTR_Copia 43788 43817 22 + . . scaffold1253 GLEAN mRNA 16186 44891 0.331456 + . ID=CGI_10004818; scaffold1581 WUBlastX LINE_L2 88093 88557 39 + . . scaffold1581 GLEAN mRNA 87967 89628 0.999064 + . ID=CGI_10005313; scaffold354 WUBlastX LTR_Gypsy 397545 397724 36 - . . scaffold354 GLEAN mRNA 397434 397808 0.999212 - . ID=CGI_10025719; scaffold38292 WUBlastX LTR_Gypsy 47397 47750 88 + . . scaffold38292 GLEAN mRNA 45996 48404 0.696819 + . ID=CGI_10002692; scaffold198 WUBlastX DNA_Harbinger 129305 129514 41 - . . scaffold198 GLEAN mRNA 125037 150103 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_Harbinger 129305 129514 41 - . . scaffold198 GLEAN mRNA 129155 148314 0.927276 - . ID=CGI_10027796; scaffold198 WUBlastX DNA_Harbinger 129712 129846 33 - . . scaffold198 GLEAN mRNA 125037 150103 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_Harbinger 129712 129846 33 - . . scaffold198 GLEAN mRNA 129155 148314 0.927276 - . ID=CGI_10027796; scaffold39096 WUBlastX LTR_Gypsy 51687 52097 38 + . . scaffold39096 GLEAN mRNA 50582 58209 0.813277 + . ID=CGI_10003149; scaffold541 WUBlastX RC_Helitron 106557 107192 41 + . . scaffold541 GLEAN mRNA 106056 107192 0.777728 + . ID=CGI_10022378; scaffold115 WUBlastX DNA_IS4EU 625843 626160 58 - . . scaffold115 GLEAN mRNA 617761 631483 0.999676 + . ID=CGI_10021409; scaffold753 WUBlastX LINE_L1 51885 52325 54 + . . scaffold753 GLEAN mRNA 36571 68340 0.958809 + . ID=CGI_10014195; scaffold1874 WUBlastX LINE_L1 118455 118859 46 - . . scaffold1874 GLEAN mRNA 117095 118859 0.558382 - . ID=CGI_10011923; scaffold1736 WUBlastX LINE_R1 372583 372963 28 - . . scaffold1736 GLEAN mRNA 366824 375681 0.972064 - . ID=CGI_10020967; scaffold1860 WUBlastX LINE_Rex-Babar 334123 334524 61 - . . scaffold1860 GLEAN mRNA 329243 343922 0.916009 + . ID=CGI_10013950; scaffold140 WUBlastX LINE_L2 346034 346096 21 - . . scaffold140 GLEAN mRNA 327930 353126 0.379108 + . ID=CGI_10020135; scaffold140 WUBlastX LINE_L2 346034 346096 21 - . . scaffold140 GLEAN mRNA 344940 369951 0.671174 - . ID=CGI_10020136; scaffold41754 WUBlastX LINE_RTE-X 89090 89308 30 + . . scaffold41754 GLEAN mRNA 79569 95321 0.84848 - . ID=CGI_10005558; scaffold36638 WUBlastX LINE_RTE-X 13868 13984 69 + . . scaffold36638 GLEAN mRNA 3118 17920 0.499919 + . ID=CGI_10002047; scaffold447 WUBlastX LINE_L1 29590 29898 45 + . . scaffold447 GLEAN mRNA 1608 38607 0.995957 + . ID=CGI_10014216; scaffold156 WUBlastX DNA_hAT-Tip100 238881 239132 67 - . . scaffold156 GLEAN mRNA 233811 241733 0.990897 + . ID=CGI_10026484; scaffold1473 WUBlastX LINE_L2 17173 17502 68 - . . scaffold1473 GLEAN mRNA 13162 33966 0.99911 + . ID=CGI_10003509; scaffold1799 WUBlastX LTR_Ngaro 57831 57986 61 - . . scaffold1799 GLEAN mRNA 46929 66946 0.999949 - . ID=CGI_10003631; scaffold599 WUBlastX LTR_Ngaro 32970 33563 50 - . . scaffold599 GLEAN mRNA 29083 62122 0.696781 + . ID=CGI_10021706; scaffold591 WUBlastX DNA_MuDR 374812 375012 70 - . . scaffold591 GLEAN mRNA 374812 375012 0.988733 - . ID=CGI_10027565; scaffold425 WUBlastX DNA_TcMar-Fot1 219878 220276 90 - . . scaffold425 GLEAN mRNA 219872 220276 0.998748 - . ID=CGI_10025981; scaffold257 WUBlastX LINE_RTE-X 319741 319836 25 + . . scaffold257 GLEAN mRNA 306483 324339 0.999073 + . ID=CGI_10027906; scaffold257 WUBlastX LINE_RTE-X 319829 319987 34 + . . scaffold257 GLEAN mRNA 306483 324339 0.999073 + . ID=CGI_10027906; scaffold922 WUBlastX LINE_CR1-L2 87005 87169 89 - . . scaffold922 GLEAN mRNA 65021 94381 0.690826 - . ID=CGI_10005662; scaffold604 WUBlastX LINE_L1-Tx1 14278 14487 92 + . . scaffold604 GLEAN mRNA 6227 39101 0.995797 - . ID=CGI_10005590; scaffold1213 WUBlastX DNA_hAT-Tip100 359156 359491 111 + . . scaffold1213 GLEAN mRNA 350181 406483 0.805895 + . ID=CGI_10027449; scaffold493 WUBlastX LINE_L1-Tx1 158597 158860 76 + . . scaffold493 GLEAN mRNA 158443 165350 0.999991 + . ID=CGI_10007250; scaffold1448 WUBlastX DNA_Kolobok-Hyd 269630 270040 23 - . . scaffold1448 GLEAN mRNA 269171 271647 0.740287 - . ID=CGI_10011860; scaffold1423 WUBlastX LINE_RTE-X 23290 23487 96 + . . scaffold1423 GLEAN mRNA 13450 32441 0.999998 - . ID=CGI_10025403; scaffold191 WUBlastX LINE_R2 209176 209322 21 - . . scaffold191 GLEAN mRNA 205783 209379 0.997333 - . ID=CGI_10022416; scaffold138 WUBlastX LINE_CR1-L2 164292 164687 50 - . . scaffold138 GLEAN mRNA 160827 167097 0.989024 - . ID=CGI_10008431; scaffold998 WUBlastX LINE_RTE-BovB 50460 50504 34 + . . scaffold998 GLEAN mRNA 43399 61271 0.812368 + . ID=CGI_10006460; scaffold998 WUBlastX LINE_RTE-BovB 50500 50601 87 + . . scaffold998 GLEAN mRNA 43399 61271 0.812368 + . ID=CGI_10006460; scaffold258 WUBlastX LTR_Gypsy 154867 154968 35 - . . scaffold258 GLEAN mRNA 151537 159402 0.998597 - . ID=CGI_10020045; scaffold313 WUBlastX LINE_R2-Hero 678458 678523 24 + . . scaffold313 GLEAN mRNA 678155 687721 0.369345 - . ID=CGI_10026618; scaffold42890 WUBlastX LINE_RTE-X 86014 86139 45 + . . scaffold42890 GLEAN mRNA 82665 91191 0.716263 - . ID=CGI_10008040; scaffold42890 WUBlastX LINE_RTE-X 86014 86139 45 + . . scaffold42890 GLEAN mRNA 76174 91402 0.99612 + . ID=CGI_10008039; scaffold1213 WUBlastX LTR_Gypsy 545652 546341 104 - . . scaffold1213 GLEAN mRNA 541578 546950 0.733271 - . ID=CGI_10027453; scaffold579 WUBlastX LINE_RTE-BovB 267245 267526 83 + . . scaffold579 GLEAN mRNA 263302 283849 0.988891 + . ID=CGI_10011268; scaffold1024 WUBlastX DNA_PiggyBac 1076105 1076257 72 - . . scaffold1024 GLEAN mRNA 1070619 1077233 0.9551 - . ID=CGI_10028563; scaffold146 WUBlastX LINE_RTE-X 453061 453348 118 - . . scaffold146 GLEAN mRNA 445752 454994 0.544479 - . ID=CGI_10024906; scaffold925 WUBlastX LTR_DIRS 438620 438964 104 + . . scaffold925 GLEAN mRNA 430454 444048 0.986598 + . ID=CGI_10017428; scaffold1600 WUBlastX LTR_DIRS 184660 184761 36 + . . scaffold1600 GLEAN mRNA 179369 186583 0.98626 + . ID=CGI_10013038; scaffold1600 WUBlastX LTR_DIRS 184660 184761 36 + . . scaffold1600 GLEAN mRNA 182749 197532 0.996574 - . ID=CGI_10013039; scaffold1377 WUBlastX DNA_IS4EU 186422 186883 53 + . . scaffold1377 GLEAN mRNA 179618 201716 0.456444 + . ID=CGI_10008623; scaffold236 WUBlastX DNA_Kolobok 232070 232252 31 - . . scaffold236 GLEAN mRNA 231446 232793 0.958487 - . ID=CGI_10018140; scaffold1872 WUBlastX LINE_RTE-X 97596 98108 41 - . . scaffold1872 GLEAN mRNA 81130 113506 0.586599 + . ID=CGI_10007184; scaffold660 WUBlastX LINE_L1-Tx1 98898 99359 81 - . . scaffold660 GLEAN mRNA 98549 108257 0.999675 - . ID=CGI_10013750; scaffold39730 WUBlastX DNA_TcMar-Marin 16544 16909 68 + . . scaffold39730 GLEAN mRNA 3685 28743 0.191255 - . ID=CGI_10003588; scaffold39730 WUBlastX DNA_TcMar-Marin 16544 16909 68 + . . scaffold39730 GLEAN mRNA 16282 30561 0.999947 + . ID=CGI_10003589; scaffold1028 WUBlastX LINE_RTE-X 42117 42332 41 + . . scaffold1028 GLEAN mRNA 38359 105235 0.597726 - . ID=CGI_10009718; C29388 WUBlastX LTR_Gypsy-Cigr 3852 4424 138 + . . C29388 GLEAN mRNA 1255 5572 0.998536 + . ID=CGI_10000526; scaffold1402 WUBlastX LINE_CR1 341815 341949 66 + . . scaffold1402 GLEAN mRNA 333924 347546 0.999947 - . ID=CGI_10017589; scaffold1402 WUBlastX LINE_CR1 342478 343029 458 + . . scaffold1402 GLEAN mRNA 333924 347546 0.999947 - . ID=CGI_10017589; scaffold658 WUBlastX DNA_TcMar-Tc2 106059 107309 1014 + . . scaffold658 GLEAN mRNA 98902 126256 0.997281 - . ID=CGI_10018964; scaffold1717 WUBlastX DNA_hAT 96293 96988 123 - . . scaffold1717 GLEAN mRNA 96290 107438 1 - . ID=CGI_10013393; scaffold398 WUBlastX LINE_CR1 4231 4722 31 - . . scaffold398 GLEAN mRNA 896 15325 0.911211 + . ID=CGI_10004360; scaffold1736 WUBlastX LINE_RTE-X 627197 627538 64 - . . scaffold1736 GLEAN mRNA 617815 628143 0.537791 - . ID=CGI_10020987; scaffold1360 WUBlastX LINE_RTE-X 734404 734712 176 - . . scaffold1360 GLEAN mRNA 732870 739512 0.95405 + . ID=CGI_10022670; scaffold39268 WUBlastX LINE_RTE-X 56706 57005 175 + . . scaffold39268 GLEAN mRNA 37983 58849 0.736622 - . ID=CGI_10003275; scaffold163 WUBlastX LTR_Gypsy 479679 480314 300 + . . scaffold163 GLEAN mRNA 440738 483510 0.311673 + . ID=CGI_10018629; scaffold767 WUBlastX LINE_RTE-X 320688 321728 47 + . . scaffold767 GLEAN mRNA 315899 380131 0.808127 - . ID=CGI_10014850; scaffold41858 WUBlastX DNA_TcMar-Tc1 90935 91213 131 + . . scaffold41858 GLEAN mRNA 78438 94955 0.999356 - . ID=CGI_10005768; scaffold42392 WUBlastX LTR_Gypsy-Cigr 147507 148058 150 - . . scaffold42392 GLEAN mRNA 146946 151067 0.782062 + . ID=CGI_10006786; scaffold1255 WUBlastX LTR_Gypsy-Cigr 393998 395692 904 + . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold833 WUBlastX LINE_L1-Tx1 465344 465853 45 - . . scaffold833 GLEAN mRNA 463710 469468 0.999591 - . ID=CGI_10016746; scaffold914 WUBlastX LINE_L2 387077 387169 22 + . . scaffold914 GLEAN mRNA 383322 392651 0.969071 - . ID=CGI_10018890; scaffold43842 WUBlastX LINE_L2 219624 220832 104 - . . scaffold43842 GLEAN mRNA 211525 222543 0.557237 - . ID=CGI_10013105; scaffold37712 WUBlastX DNA_Harbinger 15242 15430 92 - . . scaffold37712 GLEAN mRNA 15194 37462 0.403354 - . ID=CGI_10002463; scaffold1679 WUBlastX LTR_Gypsy 28624 31473 1131 - . . scaffold1679 GLEAN mRNA 27427 41298 0.999999 - . ID=CGI_10002338; scaffold1860 WUBlastX LINE_L1-Tx1 97420 97650 43 - . . scaffold1860 GLEAN mRNA 86890 98787 0.482927 + . ID=CGI_10013940; scaffold1179 WUBlastX LTR_Gypsy 22093 22626 199 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold43920 WUBlastX DNA_Kolobok 346883 347041 79 - . . scaffold43920 GLEAN mRNA 342007 379534 0.562069 - . ID=CGI_10014001; scaffold43920 WUBlastX DNA_Kolobok 347351 347539 50 - . . scaffold43920 GLEAN mRNA 342007 379534 0.562069 - . ID=CGI_10014001; scaffold1021 WUBlastX RC_Helitron 693370 694071 193 + . . scaffold1021 GLEAN mRNA 692304 699453 0.992587 + . ID=CGI_10022506; scaffold1255 WUBlastX DNA_Kolobok 4843 5082 79 - . . scaffold1255 GLEAN mRNA 3472 8230 0.999979 - . ID=CGI_10018055; scaffold1788 WUBlastX DNA_Maverick 57825 57983 30 - . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold40512 WUBlastX DNA_IS4EU 51587 51757 31 + . . scaffold40512 GLEAN mRNA 32163 58255 0.783329 + . ID=CGI_10004193; scaffold950 WUBlastX DNA_TcMar-Tc2 108160 108546 146 - . . scaffold950 GLEAN mRNA 86388 112962 1 - . ID=CGI_10022920; scaffold1301 WUBlastX LTR_Pao 624634 625536 786 - . . scaffold1301 GLEAN mRNA 619345 669752 0.288547 + . ID=CGI_10027735; scaffold1301 WUBlastX LTR_Pao 627923 628330 279 - . . scaffold1301 GLEAN mRNA 619345 669752 0.288547 + . ID=CGI_10027735; scaffold42890 WUBlastX LTR_Gypsy 82709 84166 606 - . . scaffold42890 GLEAN mRNA 82665 91191 0.716263 - . ID=CGI_10008040; scaffold42890 WUBlastX LTR_Gypsy 82709 84166 606 - . . scaffold42890 GLEAN mRNA 76174 91402 0.99612 + . ID=CGI_10008039; scaffold1589 WUBlastX LTR_Gypsy 280773 282626 1075 - . . scaffold1589 GLEAN mRNA 279757 287553 0.968345 - . ID=CGI_10024110; scaffold102 WUBlastX LINE_R2-Hero 1149148 1149339 71 - . . scaffold102 GLEAN mRNA 1142791 1154685 0.999233 - . ID=CGI_10028474; scaffold1599 WUBlastX LTR_Gypsy 240516 240743 138 - . . scaffold1599 GLEAN mRNA 238916 249872 0.993706 - . ID=CGI_10027143; scaffold1244 WUBlastX LINE_Penelope 570795 571025 87 - . . scaffold1244 GLEAN mRNA 508938 634898 0.0392589 - . ID=CGI_10020838; scaffold672 WUBlastX LINE_RTE-X 191632 192630 178 - . . scaffold672 GLEAN mRNA 185206 197456 1 + . ID=CGI_10021027; scaffold1831 WUBlastX LINE_RTE-X 30387 30704 97 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-X 30387 30704 97 - . . scaffold1831 GLEAN mRNA 30321 42527 0.595655 - . ID=CGI_10002913; scaffold925 WUBlastX LINE_RTE-X 199569 200096 83 + . . scaffold925 GLEAN mRNA 185655 201680 0.878781 - . ID=CGI_10017418; scaffold43388 WUBlastX DNA_IS4EU 226002 226118 71 - . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold43388 WUBlastX DNA_IS4EU 226517 226942 175 - . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold544 WUBlastX LINE_L1-Tx1 210917 211087 66 - . . scaffold544 GLEAN mRNA 202069 215253 0.999676 + . ID=CGI_10022552; scaffold42648 WUBlastX LTR_Gypsy 169155 169784 244 - . . scaffold42648 GLEAN mRNA 167771 174774 0.98388 - . ID=CGI_10007395; scaffold743 WUBlastX LINE_RTE-X 106816 107253 126 - . . scaffold743 GLEAN mRNA 83791 109134 0.449406 + . ID=CGI_10008614; scaffold40614 WUBlastX LTR_DIRS 64546 64653 52 - . . scaffold40614 GLEAN mRNA 56089 69167 0.972217 + . ID=CGI_10004259; scaffold867 WUBlastX LINE_L1-Tx1 3655 4005 114 + . . scaffold867 GLEAN mRNA 3265 13655 0.999351 + . ID=CGI_10026210; scaffold37006 WUBlastX LTR_DIRS 26832 27305 210 - . . scaffold37006 GLEAN mRNA 18201 34112 0.554997 + . ID=CGI_10002223; scaffold1675 WUBlastX LTR_DIRS 10126 10383 63 - . . scaffold1675 GLEAN mRNA 745 11817 0.679204 - . ID=CGI_10001288; scaffold1675 WUBlastX LTR_DIRS 10391 10768 194 - . . scaffold1675 GLEAN mRNA 745 11817 0.679204 - . ID=CGI_10001288; scaffold531 WUBlastX DNA_Academ 22748 22982 177 - . . scaffold531 GLEAN mRNA 22748 29196 0.526203 - . ID=CGI_10014486; scaffold588 WUBlastX LTR_DIRS 414466 415206 119 + . . scaffold588 GLEAN mRNA 413724 423614 0.849231 + . ID=CGI_10016228; scaffold804 WUBlastX LTR_Gypsy 178891 178998 24 - . . scaffold804 GLEAN mRNA 171131 181585 0.935885 + . ID=CGI_10014858; scaffold1031 WUBlastX DNA_TcMar-Tc1 592369 593211 264 - . . scaffold1031 GLEAN mRNA 571823 599273 0.583554 - . ID=CGI_10019718; scaffold41974 WUBlastX LINE_RTE-BovB 30903 31523 283 + . . scaffold41974 GLEAN mRNA 275 36868 0.405305 - . ID=CGI_10005902; scaffold1004 WUBlastX LINE_Penelope 281675 282697 242 + . . scaffold1004 GLEAN mRNA 274842 298566 0.682505 - . ID=CGI_10020767; scaffold145 WUBlastX LTR_DIRS 1154486 1155385 382 + . . scaffold145 GLEAN mRNA 1139972 1169601 0.998984 + . ID=CGI_10026576; scaffold595 WUBlastX LTR_Ngaro 90081 90806 302 - . . scaffold595 GLEAN mRNA 66058 94029 0.989948 - . ID=CGI_10005863; scaffold36806 WUBlastX LTR_Ngaro 25141 25236 27 + . . scaffold36806 GLEAN mRNA 22975 34393 0.994851 + . ID=CGI_10002150; scaffold1179 WUBlastX LINE_CR1-L2 42459 44234 271 - . . scaffold1179 GLEAN mRNA 39144 50414 0.726285 + . ID=CGI_10027340; scaffold43134 WUBlastX LINE_RTE-X 137535 138848 517 - . . scaffold43134 GLEAN mRNA 126924 141486 0.498925 + . ID=CGI_10008896; scaffold683 WUBlastX LINE_RTE-X 85720 85908 69 - . . scaffold683 GLEAN mRNA 80657 98109 0.999674 + . ID=CGI_10010356; scaffold265 WUBlastX LTR_Ngaro 68524 69108 164 - . . scaffold265 GLEAN mRNA 64182 72514 0.643455 - . ID=CGI_10003429; scaffold43782 WUBlastX LINE_RTE-X 112784 113173 218 - . . scaffold43782 GLEAN mRNA 102494 129639 0.999947 + . ID=CGI_10012366; scaffold1616 WUBlastX LTR_DIRS 91676 93766 513 + . . scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; scaffold42274 WUBlastX DNA_hAT 12912 13658 518 - . . scaffold42274 GLEAN mRNA 8593 13901 0.722974 - . ID=CGI_10006509; scaffold42274 WUBlastX DNA_hAT 11875 11988 79 - . . scaffold42274 GLEAN mRNA 8593 13901 0.722974 - . ID=CGI_10006509; scaffold1138 WUBlastX DNA_P 189076 189189 24 + . . scaffold1138 GLEAN mRNA 183755 192154 0.999676 - . ID=CGI_10015373; scaffold1138 WUBlastX DNA_P 189076 189189 24 + . . scaffold1138 GLEAN mRNA 186841 191383 0.716431 + . ID=CGI_10015374; scaffold41502 WUBlastX LTR_Pao 84099 84194 21 - . . scaffold41502 GLEAN mRNA 69209 85192 0.426914 + . ID=CGI_10005174; scaffold784 WUBlastX LINE_L2 850308 850655 44 + . . scaffold784 GLEAN mRNA 848886 854519 0.990187 - . ID=CGI_10024446; scaffold40828 WUBlastX LTR_Gypsy 57153 57287 23 - . . scaffold40828 GLEAN mRNA 28348 61048 0.605765 + . ID=CGI_10004502; scaffold40828 WUBlastX LTR_Gypsy 57457 57801 53 - . . scaffold40828 GLEAN mRNA 28348 61048 0.605765 + . ID=CGI_10004502; scaffold43662 WUBlastX DNA_Kolobok-Hyd 88 393 43 - . . scaffold43662 GLEAN mRNA 16 393 0.836238 - . ID=CGI_10011602; scaffold1863 WUBlastX LTR_Gypsy 30153 30677 25 - . . scaffold1863 GLEAN mRNA 29271 30914 0.999642 - . ID=CGI_10016677; scaffold126 WUBlastX DNA_MuDR 579358 579612 63 + . . scaffold126 GLEAN mRNA 576864 580670 0.999598 + . ID=CGI_10019200; scaffold169 WUBlastX LINE_RTE-X 31894 32211 44 + . . scaffold169 GLEAN mRNA 31609 39159 0.712323 + . ID=CGI_10022939; scaffold1449 WUBlastX DNA_TcMar-Tc1 51682 51963 59 - . . scaffold1449 GLEAN mRNA 47527 52497 0.806919 - . ID=CGI_10010690; scaffold34732 WUBlastX LINE_L1-Tx1 16352 16564 47 + . . scaffold34732 GLEAN mRNA 11726 18752 1 - . ID=CGI_10001335; scaffold560 WUBlastX LINE_L1-Tx1 208299 208424 74 + . . scaffold560 GLEAN mRNA 202365 213820 0.999892 - . ID=CGI_10008758; scaffold177 WUBlastX LINE_L2 317127 317927 52 + . . scaffold177 GLEAN mRNA 302189 324161 0.999349 - . ID=CGI_10016066; scaffold32300 WUBlastX DNA_hAT-Ac 10298 10525 78 - . . scaffold32300 GLEAN mRNA 10008 10525 1 - . ID=CGI_10000880; scaffold485 WUBlastX DNA_IS4EU 826803 826976 94 + . . scaffold485 GLEAN mRNA 823477 836722 0.499894 - . ID=CGI_10024196; scaffold128 WUBlastX LTR_Gypsy 275169 275198 95 + . . scaffold128 GLEAN mRNA 275169 275468 0.999372 + . ID=CGI_10021515; scaffold695 WUBlastX LINE_L1-Tx1 97836 98411 42 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold37062 WUBlastX LTR_ERV1 5226 5669 30 + . . scaffold37062 GLEAN mRNA 5049 6548 0.965908 + . ID=CGI_10002249; scaffold348 WUBlastX LINE_Penelope 176054 176308 65 - . . scaffold348 GLEAN mRNA 160739 182763 0.583298 + . ID=CGI_10022972; scaffold507 WUBlastX LINE_L1 37951 38175 45 + . . scaffold507 GLEAN mRNA 28082 39253 0.563608 + . ID=CGI_10019083; scaffold77 WUBlastX LINE_L1 949301 949780 62 + . . scaffold77 GLEAN mRNA 945677 960566 0.933688 - . ID=CGI_10028012; scaffold35538 WUBlastX LINE_RTE-X 21118 21330 54 - . . scaffold35538 GLEAN mRNA 14229 24935 0.828916 + . ID=CGI_10001559; C31366 WUBlastX DNA_Academ 4019 4114 32 + . . C31366 GLEAN mRNA 393 6299 0.999547 - . ID=CGI_10000739; C31366 WUBlastX DNA_Academ 4143 4196 24 + . . C31366 GLEAN mRNA 393 6299 0.999547 - . ID=CGI_10000739; scaffold1429 WUBlastX DNA_IS4EU 17269 17514 57 - . . scaffold1429 GLEAN mRNA 13458 17611 0.727726 + . ID=CGI_10001355; scaffold39014 WUBlastX LINE_L1 10476 10778 79 + . . scaffold39014 GLEAN mRNA 10476 11390 0.848087 + . ID=CGI_10003135; scaffold1132 WUBlastX DNA_TcMar-Marin 553362 553628 65 - . . scaffold1132 GLEAN mRNA 548431 556148 0.760962 + . ID=CGI_10023324; scaffold1894 WUBlastX LINE_L1-Tx1 318836 319531 37 - . . scaffold1894 GLEAN mRNA 303181 340585 0.788071 + . ID=CGI_10013342; scaffold260 WUBlastX LINE_L2 62759 62887 101 + . . scaffold260 GLEAN mRNA 48314 65715 0.848653 - . ID=CGI_10003729; scaffold1616 WUBlastX LTR_ERVL 91553 92269 89 + . . scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; scaffold41970 WUBlastX LINE_L1 37863 38303 51 - . . scaffold41970 GLEAN mRNA 24536 41358 0.912364 - . ID=CGI_10005882; scaffold226 WUBlastX LTR_Gypsy 920232 921296 86 + . . scaffold226 GLEAN mRNA 913200 931789 0.655497 - . ID=CGI_10025388; scaffold672 WUBlastX DNA_IS4EU 10159 10386 106 + . . scaffold672 GLEAN mRNA 1455 17003 0.927273 - . ID=CGI_10021021; scaffold394 WUBlastX DNA_Kolobok 292479 292697 92 + . . scaffold394 GLEAN mRNA 286632 296945 0.296609 + . ID=CGI_10022077; scaffold1352 WUBlastX LINE_L1 217165 217584 52 - . . scaffold1352 GLEAN mRNA 212932 230879 0.392918 - . ID=CGI_10018413; scaffold365 WUBlastX LINE_RTE-X 186609 186935 101 - . . scaffold365 GLEAN mRNA 162342 187868 0.996603 - . ID=CGI_10022722; scaffold1179 WUBlastX LINE_L1-Tx1 939636 939869 97 + . . scaffold1179 GLEAN mRNA 936280 947260 0.224969 + . ID=CGI_10027393; scaffold1851 WUBlastX LTR_Gypsy 104174 104689 80 + . . scaffold1851 GLEAN mRNA 98297 105350 0.387171 - . ID=CGI_10005104; scaffold546 WUBlastX DNA_hAT-Tip100 394012 394245 116 - . . scaffold546 GLEAN mRNA 387340 395941 0.945058 - . ID=CGI_10021003; scaffold693 WUBlastX LINE_RTE-BovB 10175 10360 55 + . . scaffold693 GLEAN mRNA 1018 11877 0.999949 - . ID=CGI_10000930; scaffold693 WUBlastX LINE_RTE-BovB 10491 10583 37 + . . scaffold693 GLEAN mRNA 1018 11877 0.999949 - . ID=CGI_10000930; scaffold1703 WUBlastX LINE_RTE-BovB 419399 419611 68 + . . scaffold1703 GLEAN mRNA 410303 422392 0.738334 - . ID=CGI_10023058; scaffold351 WUBlastX DNA_Sola 314936 315103 78 + . . scaffold351 GLEAN mRNA 306790 315103 0.777625 + . ID=CGI_10022605; scaffold1036 WUBlastX DNA_IS4EU 67360 67542 33 + . . scaffold1036 GLEAN mRNA 62334 73775 0.755696 - . ID=CGI_10019943; scaffold1036 WUBlastX DNA_IS4EU 68033 68272 42 + . . scaffold1036 GLEAN mRNA 62334 73775 0.755696 - . ID=CGI_10019943; scaffold767 WUBlastX LINE_L1 280686 281090 67 + . . scaffold767 GLEAN mRNA 267592 288448 0.433091 + . ID=CGI_10014846; scaffold453 WUBlastX DNA_Kolobok 302351 302491 44 + . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold35438 WUBlastX DNA_MuDR 14442 14678 78 - . . scaffold35438 GLEAN mRNA 3327 22372 0.999028 - . ID=CGI_10001514; scaffold203 WUBlastX LINE_RTE-X 425695 426153 40 - . . scaffold203 GLEAN mRNA 422258 430817 0.3597 + . ID=CGI_10021072; scaffold36768 WUBlastX LINE_L1-Tx1 36494 36679 55 + . . scaffold36768 GLEAN mRNA 29335 37620 1 + . ID=CGI_10002113; scaffold43552 WUBlastX LTR_Copia 221437 221568 20 - . . scaffold43552 GLEAN mRNA 204428 227902 0.829194 - . ID=CGI_10011023; scaffold39476 WUBlastX LTR_Gypsy 49629 50147 86 + . . scaffold39476 GLEAN mRNA 49505 51682 1 + . ID=CGI_10002876; scaffold1532 WUBlastX LINE_R2 409942 410019 23 - . . scaffold1532 GLEAN mRNA 405806 428910 0.729212 + . ID=CGI_10028250; scaffold67 WUBlastX DNA_hAT-Tip100 30892 30993 28 + . . scaffold67 GLEAN mRNA 22173 32149 1 - . ID=CGI_10018261; scaffold410 WUBlastX LINE_L1-Tx1 265598 265690 28 + . . scaffold410 GLEAN mRNA 261101 270903 0.399222 + . ID=CGI_10020632; scaffold280 WUBlastX LTR_DIRS 649684 650010 138 + . . scaffold280 GLEAN mRNA 645758 661781 0.996424 - . ID=CGI_10024601; scaffold1589 WUBlastX LINE_Penelope 128562 129008 79 + . . scaffold1589 GLEAN mRNA 111686 137363 0.668529 + . ID=CGI_10024108; scaffold6 WUBlastX LINE_L1-Tx1 199909 200280 21 + . . scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; scaffold1322 WUBlastX LTR_Ngaro 301037 301159 50 - . . scaffold1322 GLEAN mRNA 265135 302274 0.499623 + . ID=CGI_10019472; scaffold1884 WUBlastX LTR_Gypsy 33702 33941 20 - . . scaffold1884 GLEAN mRNA 33208 35112 1 - . ID=CGI_10012008; C34174 WUBlastX LTR_Ngaro 1834 3309 906 + . . C34174 GLEAN mRNA 745 7629 0.544712 - . ID=CGI_10001232; scaffold750 WUBlastX LINE_L2 15681 15878 50 + . . scaffold750 GLEAN mRNA 5241 30687 0.971968 + . ID=CGI_10022205; scaffold241 WUBlastX DNA_NOF 391957 392625 91 - . . scaffold241 GLEAN mRNA 380326 398675 0.495388 - . ID=CGI_10025102; scaffold126 WUBlastX LINE_L2 219259 220884 929 + . . scaffold126 GLEAN mRNA 215728 221364 0.491639 + . ID=CGI_10019186; scaffold99 WUBlastX LINE_L1-Tx1 358665 359084 177 + . . scaffold99 GLEAN mRNA 358334 365567 0.999675 + . ID=CGI_10021202; scaffold99 WUBlastX LINE_L1-Tx1 359682 360329 314 + . . scaffold99 GLEAN mRNA 358334 365567 0.999675 + . ID=CGI_10021202; scaffold99 WUBlastX LINE_L1-Tx1 360328 361275 338 + . . scaffold99 GLEAN mRNA 358334 365567 0.999675 + . ID=CGI_10021202; scaffold99 WUBlastX LINE_L1-Tx1 361947 362120 30 + . . scaffold99 GLEAN mRNA 358334 365567 0.999675 + . ID=CGI_10021202; scaffold40282 WUBlastX LTR_Gypsy 73961 74791 222 - . . scaffold40282 GLEAN mRNA 56091 83549 0.539379 + . ID=CGI_10004002; scaffold1869 WUBlastX LINE_L1-Tx1 205852 206475 69 - . . scaffold1869 GLEAN mRNA 201078 208517 1 - . ID=CGI_10009025; scaffold31 WUBlastX LINE_L1-Tx1 14675 14986 164 - . . scaffold31 GLEAN mRNA 7584 16133 0.792688 - . ID=CGI_10013551; scaffold581 WUBlastX LINE_L1-Tx1 275490 275978 116 - . . scaffold581 GLEAN mRNA 217971 276528 0.207483 - . ID=CGI_10013742; scaffold625 WUBlastX LINE_L1-Tx1 669180 669491 139 - . . scaffold625 GLEAN mRNA 660953 675922 0.820405 - . ID=CGI_10023430; scaffold716 WUBlastX LTR_Ngaro 330445 332019 1068 + . . scaffold716 GLEAN mRNA 317907 344001 0.842692 + . ID=CGI_10014452; scaffold1644 WUBlastX DNA_Academ 62363 62599 50 - . . scaffold1644 GLEAN mRNA 59083 88105 0.250771 - . ID=CGI_10004214; scaffold760 WUBlastX LINE_L1-Tx1 130983 131195 21 + . . scaffold760 GLEAN mRNA 117770 147032 0.706686 + . ID=CGI_10023976; scaffold198 WUBlastX LINE_L2 774437 774850 162 + . . scaffold198 GLEAN mRNA 771982 806817 0.999999 + . ID=CGI_10027821; scaffold43664 WUBlastX LINE_RTE-X 214179 214898 97 + . . scaffold43664 GLEAN mRNA 204407 215793 0.656307 - . ID=CGI_10011717; scaffold583 WUBlastX DNA_En-Spm 246097 248010 1217 + . . scaffold583 GLEAN mRNA 245420 251821 0.99076 + . ID=CGI_10023613; scaffold733 WUBlastX LINE_L1 889801 890205 98 - . . scaffold733 GLEAN mRNA 864535 893177 0.998838 + . ID=CGI_10025893; scaffold517 WUBlastX LINE_L1 199200 199403 21 - . . scaffold517 GLEAN mRNA 188444 202746 0.541804 + . ID=CGI_10008984; scaffold1334 WUBlastX LINE_Penelope 8337 9488 87 + . . scaffold1334 GLEAN mRNA 1383 27081 0.666269 - . ID=CGI_10003403; scaffold752 WUBlastX LINE_RTE-X 15591 15773 41 - . . scaffold752 GLEAN mRNA 9483 39806 0.831804 + . ID=CGI_10010038; scaffold54 WUBlastX LTR_Gypsy 80867 81151 48 + . . scaffold54 GLEAN mRNA 79485 84388 0.939929 + . ID=CGI_10023654; scaffold453 WUBlastX LTR_Gypsy 305139 306395 1134 + . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold39196 WUBlastX RC_Helitron 37169 37273 24 - . . scaffold39196 GLEAN mRNA 18014 59804 0.5589 - . ID=CGI_10003215; scaffold351 WUBlastX LINE_Penelope 103402 103536 34 + . . scaffold351 GLEAN mRNA 94305 104490 0.817501 - . ID=CGI_10022591; scaffold759 WUBlastX LINE_RTE-X 247867 248406 105 - . . scaffold759 GLEAN mRNA 240053 255917 0.998454 - . ID=CGI_10010781; scaffold597 WUBlastX LINE_RTE-RTE 35928 36239 163 - . . scaffold597 GLEAN mRNA 30096 40610 0.999676 + . ID=CGI_10004927; scaffold597 WUBlastX LINE_RTE-RTE 37616 37927 163 - . . scaffold597 GLEAN mRNA 30096 40610 0.999676 + . ID=CGI_10004927; scaffold252 WUBlastX LINE_L1-Tx1 195000 195257 75 + . . scaffold252 GLEAN mRNA 193535 212637 0.650781 - . ID=CGI_10010768; scaffold1785 WUBlastX LINE_CR1-L2 544486 544764 161 + . . scaffold1785 GLEAN mRNA 522476 550245 0.457905 + . ID=CGI_10024389; scaffold1186 WUBlastX LTR_Pao 203675 203848 111 + . . scaffold1186 GLEAN mRNA 187396 222353 0.578632 + . ID=CGI_10010597; scaffold1350 WUBlastX LTR_Ngaro 203271 203672 170 - . . scaffold1350 GLEAN mRNA 200904 214641 0.523236 - . ID=CGI_10017304; scaffold1241 WUBlastX LTR_Gypsy-Cigr 158403 159107 189 - . . scaffold1241 GLEAN mRNA 158229 159365 0.555898 - . ID=CGI_10016428; scaffold57 WUBlastX DNA_En-Spm 4371 4835 130 + . . scaffold57 GLEAN mRNA 3208 18413 0.810616 + . ID=CGI_10020530; C34856 WUBlastX LTR_Gypsy 9539 10372 186 + . . C34856 GLEAN mRNA 131 10544 0.998639 + . ID=CGI_10001362; scaffold549 WUBlastX LINE_RTE-BovB 59563 59670 55 + . . scaffold549 GLEAN mRNA 50843 62768 0.999759 - . ID=CGI_10004104; scaffold549 WUBlastX LINE_RTE-BovB 59563 59670 55 + . . scaffold549 GLEAN mRNA 31331 63327 0.976872 + . ID=CGI_10004103; scaffold1825 WUBlastX LINE_L2 159961 160122 117 + . . scaffold1825 GLEAN mRNA 146338 162532 0.790331 + . ID=CGI_10011146; scaffold1825 WUBlastX LINE_L2 160256 160714 123 + . . scaffold1825 GLEAN mRNA 146338 162532 0.790331 + . ID=CGI_10011146; scaffold1401 WUBlastX LINE_I 5408 5554 22 - . . scaffold1401 GLEAN mRNA 431 6619 0.997038 - . ID=CGI_10001278; scaffold626 WUBlastX DNA_hAT 189297 189407 65 + . . scaffold626 GLEAN mRNA 185398 190939 0.996819 + . ID=CGI_10019986; scaffold626 WUBlastX DNA_hAT 187436 188167 167 + . . scaffold626 GLEAN mRNA 185398 190939 0.996819 + . ID=CGI_10019986; scaffold847 WUBlastX LTR_DIRS 509286 509549 189 - . . scaffold847 GLEAN mRNA 507894 513184 0.74223 - . ID=CGI_10022280; scaffold37678 WUBlastX RC_Helitron 8393 13984 1930 - . . scaffold37678 GLEAN mRNA 3054 19948 0.906607 - . ID=CGI_10002431; scaffold1603 WUBlastX LTR_Pao 333170 333421 69 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold383 WUBlastX DNA_Sola 754623 756008 247 + . . scaffold383 GLEAN mRNA 742434 758358 1 + . ID=CGI_10023553; scaffold305 WUBlastX LTR_Gypsy 124324 127791 2459 - . . scaffold305 GLEAN mRNA 114232 133246 0.986225 - . ID=CGI_10019117; scaffold41242 WUBlastX LINE_L1-Tx1 99895 100080 72 + . . scaffold41242 GLEAN mRNA 97496 109439 0.170639 - . ID=CGI_10004889; scaffold41242 WUBlastX LINE_L1-Tx1 100129 100794 38 + . . scaffold41242 GLEAN mRNA 97496 109439 0.170639 - . ID=CGI_10004889; scaffold41242 WUBlastX LINE_L1-Tx1 101117 101392 107 + . . scaffold41242 GLEAN mRNA 97496 109439 0.170639 - . ID=CGI_10004889; scaffold1831 WUBlastX LINE_RTE-BovB 34026 34754 88 + . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-BovB 34026 34754 88 + . . scaffold1831 GLEAN mRNA 30321 42527 0.595655 - . ID=CGI_10002913; scaffold1174 WUBlastX LINE_L2 141027 141218 58 - . . scaffold1174 GLEAN mRNA 122742 144408 0.527772 + . ID=CGI_10026027; scaffold156 WUBlastX LINE_R2-Hero 240837 241619 313 + . . scaffold156 GLEAN mRNA 233811 241733 0.990897 + . ID=CGI_10026484; scaffold156 WUBlastX LINE_R2-Hero 241119 241619 313 + . . scaffold156 GLEAN mRNA 241119 253785 0.986993 - . ID=CGI_10026485; scaffold1237 WUBlastX LTR_DIRS 261182 261442 78 + . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold3 WUBlastX LTR_Ngaro 974350 974796 97 - . . scaffold3 GLEAN mRNA 958982 982969 0.663393 + . ID=CGI_10027317; scaffold1127 WUBlastX LINE_L1 20076 20132 24 - . . scaffold1127 GLEAN mRNA 44 22807 0.494799 - . ID=CGI_10010645; scaffold40290 WUBlastX LINE_RTE-X 7655 8518 202 - . . scaffold40290 GLEAN mRNA 1168 10080 1 + . ID=CGI_10004018; scaffold616 WUBlastX LINE_L1-Tx1 128107 128604 206 + . . scaffold616 GLEAN mRNA 126038 136791 1 + . ID=CGI_10015389; scaffold743 WUBlastX LINE_RTE-X 107835 108218 87 - . . scaffold743 GLEAN mRNA 83791 109134 0.449406 + . ID=CGI_10008614; scaffold678 WUBlastX DNA_Harbinger 747022 747135 53 - . . scaffold678 GLEAN mRNA 740088 752113 0.995705 - . ID=CGI_10026377; scaffold678 WUBlastX DNA_Harbinger 747022 747135 53 - . . scaffold678 GLEAN mRNA 742489 752098 0.987721 + . ID=CGI_10026378; scaffold38976 WUBlastX DNA_TcMar-Marin 10731 10946 84 - . . scaffold38976 GLEAN mRNA 801 15953 0.854638 + . ID=CGI_10003109; scaffold38976 WUBlastX DNA_TcMar-Marin 11098 11280 120 - . . scaffold38976 GLEAN mRNA 801 15953 0.854638 + . ID=CGI_10003109; scaffold38976 WUBlastX DNA_TcMar-Marin 11282 11776 167 - . . scaffold38976 GLEAN mRNA 801 15953 0.854638 + . ID=CGI_10003109; scaffold885 WUBlastX LINE_L1-Tx1 1010516 1010851 198 + . . scaffold885 GLEAN mRNA 1005329 1048267 0.991835 - . ID=CGI_10025234; scaffold1891 WUBlastX DNA_Harbinger 150618 150716 27 - . . scaffold1891 GLEAN mRNA 133537 158573 0.499706 - . ID=CGI_10008737; scaffold1891 WUBlastX DNA_Harbinger 150850 151023 123 - . . scaffold1891 GLEAN mRNA 133537 158573 0.499706 - . ID=CGI_10008737; scaffold1891 WUBlastX DNA_Harbinger 151432 151554 75 - . . scaffold1891 GLEAN mRNA 133537 158573 0.499706 - . ID=CGI_10008737; scaffold39088 WUBlastX DNA_TcMar-Tc1 40134 40247 20 + . . scaffold39088 GLEAN mRNA 31554 48725 0.999086 - . ID=CGI_10003173; scaffold39088 WUBlastX DNA_TcMar-Tc1 40571 40783 118 + . . scaffold39088 GLEAN mRNA 31554 48725 0.999086 - . ID=CGI_10003173; scaffold39088 WUBlastX DNA_TcMar-Tc1 41232 41369 92 + . . scaffold39088 GLEAN mRNA 31554 48725 0.999086 - . ID=CGI_10003173; scaffold247 WUBlastX LINE_RTE-BovB 202935 203150 24 - . . scaffold247 GLEAN mRNA 197989 208519 0.419557 + . ID=CGI_10018593; scaffold247 WUBlastX LINE_RTE-BovB 204110 204385 69 - . . scaffold247 GLEAN mRNA 197989 208519 0.419557 + . ID=CGI_10018593; scaffold481 WUBlastX LINE_L2 1216428 1216985 256 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LINE_L2 1216984 1217247 99 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold43036 WUBlastX DNA_hAT-Blackja 151466 151843 69 + . . scaffold43036 GLEAN mRNA 148188 171820 0.999804 + . ID=CGI_10008498; scaffold1281 WUBlastX LTR_DIRS 8994 9158 66 + . . scaffold1281 GLEAN mRNA 6818 22494 0.72874 + . ID=CGI_10001420; scaffold77 WUBlastX DNA_hAT-hATw 658763 658846 38 + . . scaffold77 GLEAN mRNA 654725 664026 0.999581 + . ID=CGI_10027987; scaffold33980 WUBlastX DNA_hAT-Tip100 3883 4992 242 + . . scaffold33980 GLEAN mRNA 2151 15835 0.664854 + . ID=CGI_10001168; scaffold292 WUBlastX DNA_TcMar-Marin 38059 38349 116 + . . scaffold292 GLEAN mRNA 29262 46507 0.999144 + . ID=CGI_10003527; scaffold917 WUBlastX DNA_Sola 134339 134881 303 + . . scaffold917 GLEAN mRNA 121193 151265 0.227919 + . ID=CGI_10011083; scaffold40134 WUBlastX DNA_Maverick 50876 51160 179 - . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold1833 WUBlastX RC_Helitron 60976 63237 349 + . . scaffold1833 GLEAN mRNA 49110 69658 0.917044 + . ID=CGI_10007300; scaffold169 WUBlastX LTR_Gypsy 632429 632563 26 + . . scaffold169 GLEAN mRNA 628224 637732 0.973288 - . ID=CGI_10022960; scaffold43170 WUBlastX LINE_L1-Tx1 130053 131423 334 + . . scaffold43170 GLEAN mRNA 114474 133457 0.997994 + . ID=CGI_10009103; scaffold1345 WUBlastX LTR_Gypsy 240036 240263 116 - . . scaffold1345 GLEAN mRNA 239892 251479 1 - . ID=CGI_10016283; scaffold54 WUBlastX LTR_Gypsy 80695 80889 61 + . . scaffold54 GLEAN mRNA 79485 84388 0.939929 + . ID=CGI_10023654; scaffold557 WUBlastX LINE_L1 401965 402090 54 + . . scaffold557 GLEAN mRNA 401528 413927 0.99928 + . ID=CGI_10017980; scaffold257 WUBlastX LTR_DIRS 1607764 1607997 96 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold257 WUBlastX LTR_DIRS 1608074 1608946 208 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold610 WUBlastX LTR_Gypsy 569223 569360 40 + . . scaffold610 GLEAN mRNA 561259 570035 0.686247 - . ID=CGI_10021130; scaffold610 WUBlastX LTR_Gypsy 568756 569175 125 + . . scaffold610 GLEAN mRNA 561259 570035 0.686247 - . ID=CGI_10021130; scaffold1423 WUBlastX LINE_RTE-BovB 713898 714326 187 + . . scaffold1423 GLEAN mRNA 702823 732700 0.440207 - . ID=CGI_10025438; scaffold1021 WUBlastX LTR_DIRS 100986 101150 101 + . . scaffold1021 GLEAN mRNA 100590 130334 0.994213 + . ID=CGI_10022484; scaffold1021 WUBlastX LTR_DIRS 101520 102215 272 + . . scaffold1021 GLEAN mRNA 100590 130334 0.994213 + . ID=CGI_10022484; scaffold1021 WUBlastX LTR_DIRS 102301 102486 73 + . . scaffold1021 GLEAN mRNA 100590 130334 0.994213 + . ID=CGI_10022484; scaffold1021 WUBlastX LTR_DIRS 102524 103147 168 + . . scaffold1021 GLEAN mRNA 100590 130334 0.994213 + . ID=CGI_10022484; scaffold42274 WUBlastX DNA_hAT 11459 11650 82 - . . scaffold42274 GLEAN mRNA 8593 13901 0.722974 - . ID=CGI_10006509; scaffold35712 WUBlastX LINE_RTE-X 6754 7686 315 + . . scaffold35712 GLEAN mRNA 3858 24173 0.47659 + . ID=CGI_10001589; scaffold40134 WUBlastX DNA_Maverick 40993 42090 657 - . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold286 WUBlastX LINE_RTE-X 104479 104985 104 + . . scaffold286 GLEAN mRNA 101905 133971 0.984811 - . ID=CGI_10015959; scaffold839 WUBlastX LINE_L1 86449 86703 104 - . . scaffold839 GLEAN mRNA 78755 87937 0.999546 - . ID=CGI_10004337; scaffold929 WUBlastX LINE_CR1-L2 124599 124916 43 + . . scaffold929 GLEAN mRNA 116400 138361 0.987262 + . ID=CGI_10006345; scaffold469 WUBlastX LINE_CR1-L2 827361 827750 35 - . . scaffold469 GLEAN mRNA 824216 847987 1 - . ID=CGI_10024698; scaffold121 WUBlastX DNA_En-Spm 874287 874709 20 + . . scaffold121 GLEAN mRNA 873837 879402 0.999211 + . ID=CGI_10025682; scaffold67 WUBlastX DNA_IS4EU 90153 90482 39 - . . scaffold67 GLEAN mRNA 72770 90591 0.702383 - . ID=CGI_10018264; C31096 WUBlastX LINE_RTE-X 4637 5020 84 - . . C31096 GLEAN mRNA 4535 6700 0.999978 - . ID=CGI_10000705; scaffold339 WUBlastX LINE_RTE-X 155737 155889 50 - . . scaffold339 GLEAN mRNA 146286 166002 0.999828 + . ID=CGI_10008803; scaffold658 WUBlastX LINE_RTE-BovB 232486 232662 76 - . . scaffold658 GLEAN mRNA 228316 233174 0.37443 + . ID=CGI_10018968; scaffold575 WUBlastX DNA_Sola 159108 159179 25 - . . scaffold575 GLEAN mRNA 145353 162107 0.486824 - . ID=CGI_10007002; scaffold950 WUBlastX LTR_DIRS 397123 397221 63 - . . scaffold950 GLEAN mRNA 384027 397632 0.588964 + . ID=CGI_10022929; scaffold1333 WUBlastX LTR_Copia 11361 11759 38 - . . scaffold1333 GLEAN mRNA 338 23548 0.590765 - . ID=CGI_10009672; scaffold35444 WUBlastX LTR_Gypsy-Cigr 5770 5931 57 - . . scaffold35444 GLEAN mRNA 591 6430 0.999654 - . ID=CGI_10001555; scaffold38944 WUBlastX LTR_Gypsy 22468 22614 45 + . . scaffold38944 GLEAN mRNA 22468 23617 0.769564 + . ID=CGI_10003070; scaffold40172 WUBlastX LINE_L1 37383 37520 50 - . . scaffold40172 GLEAN mRNA 6995 45177 0.895984 + . ID=CGI_10003930; scaffold492 WUBlastX LINE_RTE-X 442153 442215 25 + . . scaffold492 GLEAN mRNA 440262 450143 0.878616 + . ID=CGI_10024836; scaffold492 WUBlastX LINE_RTE-X 442211 442327 27 + . . scaffold492 GLEAN mRNA 440262 450143 0.878616 + . ID=CGI_10024836; scaffold43964 WUBlastX LINE_RTE-X 134734 134958 63 - . . scaffold43964 GLEAN mRNA 134421 152513 0.996559 - . ID=CGI_10014643; scaffold1 WUBlastX DNA_TcMar-Tc1 253294 253386 23 - . . scaffold1 GLEAN mRNA 239740 257002 0.998426 - . ID=CGI_10013473; scaffold1097 WUBlastX DNA_TcMar-Tc1 590390 590466 56 - . . scaffold1097 GLEAN mRNA 566282 590466 0.579339 - . ID=CGI_10024535; scaffold506 WUBlastX LINE_CR1 563836 563909 84 + . . scaffold506 GLEAN mRNA 555361 563909 0.886004 + . ID=CGI_10019282; scaffold681 WUBlastX LINE_L2 35177 35428 86 + . . scaffold681 GLEAN mRNA 27385 42751 0.999855 + . ID=CGI_10014717; scaffold1066 WUBlastX LTR_Ngaro 179311 179730 25 - . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold3 WUBlastX DNA_Kolobok 289401 289895 23 - . . scaffold3 GLEAN mRNA 287358 293038 0.456262 - . ID=CGI_10027289; scaffold482 WUBlastX DNA_Kolobok-Hyd 42494 42559 45 + . . scaffold482 GLEAN mRNA 41454 43438 0.427398 + . ID=CGI_10010992; scaffold39572 WUBlastX LINE_RTE-X 63089 63334 28 + . . scaffold39572 GLEAN mRNA 44325 68809 0.785898 - . ID=CGI_10003446; scaffold43064 WUBlastX DNA_TcMar-Tc1 167524 167709 86 - . . scaffold43064 GLEAN mRNA 165128 188165 0.499838 + . ID=CGI_10008633; scaffold1062 WUBlastX LINE_CR1 8611 8805 107 + . . scaffold1062 GLEAN mRNA 7819 14088 0.462682 - . ID=CGI_10005737; scaffold536 WUBlastX LINE_CR1-L2 88636 88749 47 + . . scaffold536 GLEAN mRNA 68482 93233 0.999348 + . ID=CGI_10006670; scaffold40068 WUBlastX DNA_TcMar-Tc1 49753 49965 78 - . . scaffold40068 GLEAN mRNA 33497 57280 0.493966 - . ID=CGI_10003835; scaffold1024 WUBlastX LTR_Gypsy 682225 682350 22 - . . scaffold1024 GLEAN mRNA 661256 689203 0.701647 - . ID=CGI_10028542; scaffold1532 WUBlastX DNA_Harbinger 176747 176941 94 - . . scaffold1532 GLEAN mRNA 176651 177200 0.889583 - . ID=CGI_10028236; scaffold35994 WUBlastX LTR_Gypsy 23659 23940 122 + . . scaffold35994 GLEAN mRNA 21382 24601 0.722015 + . ID=CGI_10001675; scaffold42770 WUBlastX LINE_L1 16701 16877 68 - . . scaffold42770 GLEAN mRNA 14131 34729 0.562742 - . ID=CGI_10007687; scaffold38750 WUBlastX LINE_RTE-X 3734 3955 53 + . . scaffold38750 GLEAN mRNA 2403 8066 0.927797 + . ID=CGI_10002953; scaffold1132 WUBlastX DNA_TcMar-Tc1 210572 210829 99 + . . scaffold1132 GLEAN mRNA 207782 231438 0.973884 - . ID=CGI_10023314; scaffold976 WUBlastX DNA_TcMar-Tc1 49263 49634 99 - . . scaffold976 GLEAN mRNA 40652 60127 0.884558 - . ID=CGI_10014002; scaffold1589 WUBlastX LTR_Copia 595315 595395 26 + . . scaffold1589 GLEAN mRNA 592118 603104 0.965132 - . ID=CGI_10024122; scaffold983 WUBlastX DNA_NOF 247470 247595 22 + . . scaffold983 GLEAN mRNA 244830 248843 1 - . ID=CGI_10014030; scaffold41034 WUBlastX LTR_DIRS 59281 59448 100 + . . scaffold41034 GLEAN mRNA 40186 62880 0.65884 + . ID=CGI_10004651; scaffold962 WUBlastX LINE_L1-Tx1 900959 901105 29 - . . scaffold962 GLEAN mRNA 895122 910659 0.455688 + . ID=CGI_10027670; scaffold587 WUBlastX DNA_TcMar-ISRm1 3017 3547 113 + . . scaffold587 GLEAN mRNA 1966 7737 0.999375 - . ID=CGI_10006887; scaffold288 WUBlastX LINE_L1-Tx1 137379 137720 36 - . . scaffold288 GLEAN mRNA 119793 142586 0.674065 - . ID=CGI_10020658; scaffold1259 WUBlastX LINE_L2 12574 13065 91 + . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold698 WUBlastX DNA_Harbinger 67758 68069 104 - . . scaffold698 GLEAN mRNA 47494 76860 0.800424 + . ID=CGI_10020726; scaffold363 WUBlastX DNA_IS4EU 513312 513473 41 - . . scaffold363 GLEAN mRNA 509476 539448 0.543882 + . ID=CGI_10019312; scaffold363 WUBlastX DNA_IS4EU 514268 514591 108 - . . scaffold363 GLEAN mRNA 509476 539448 0.543882 + . ID=CGI_10019312; C30668 WUBlastX LINE_Penelope 6887 6953 66 + . . C30668 GLEAN mRNA 6585 6953 0.481188 + . ID=CGI_10000655; scaffold1794 WUBlastX LINE_RTE-X 27751 28095 93 - . . scaffold1794 GLEAN mRNA 20538 42560 0.51959 + . ID=CGI_10019565; scaffold313 WUBlastX LTR_Gypsy 154336 155241 74 - . . scaffold313 GLEAN mRNA 152241 158129 0.999929 - . ID=CGI_10026586; scaffold588 WUBlastX LINE_Penelope 146468 146650 81 - . . scaffold588 GLEAN mRNA 132834 155339 0.82921 + . ID=CGI_10016211; scaffold1671 WUBlastX LINE_RTE-BovB 311154 311468 97 - . . scaffold1671 GLEAN mRNA 303116 311549 0.243132 + . ID=CGI_10015154; scaffold425 WUBlastX DNA_IS4EU 126656 126922 40 + . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold425 WUBlastX DNA_IS4EU 127022 127144 66 + . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold37712 WUBlastX LTR_Gypsy 35974 36333 71 + . . scaffold37712 GLEAN mRNA 15194 37462 0.403354 - . ID=CGI_10002463; scaffold595 WUBlastX LTR_Ngaro 91263 91796 413 - . . scaffold595 GLEAN mRNA 66058 94029 0.989948 - . ID=CGI_10005863; scaffold94 WUBlastX DNA_hAT-Blackja 119843 120664 168 + . . scaffold94 GLEAN mRNA 111860 132138 0.804225 + . ID=CGI_10013913; scaffold534 WUBlastX LTR_Gypsy 70072 70656 490 - . . scaffold534 GLEAN mRNA 66095 75550 0.716363 + . ID=CGI_10005164; C35952 WUBlastX RC_Helitron 1398 1592 66 + . . C35952 GLEAN mRNA 195 8083 0.544487 + . ID=CGI_10001669; scaffold42 WUBlastX DNA_Kolobok 367449 367706 46 + . . scaffold42 GLEAN mRNA 366625 368271 0.99869 + . ID=CGI_10018915; scaffold1714 WUBlastX LINE_L2 311159 311323 31 - . . scaffold1714 GLEAN mRNA 306589 325335 0.999557 + . ID=CGI_10013680; scaffold385 WUBlastX DNA_TcMar-Tc1 276034 276102 22 + . . scaffold385 GLEAN mRNA 273365 289522 0.998167 - . ID=CGI_10011601; scaffold385 WUBlastX DNA_TcMar-Tc1 276655 276936 99 + . . scaffold385 GLEAN mRNA 273365 289522 0.998167 - . ID=CGI_10011601; scaffold39134 WUBlastX LTR_Gypsy 45196 45354 69 + . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold113 WUBlastX DNA_MuDR 589504 589641 56 - . . scaffold113 GLEAN mRNA 582017 590807 0.980826 - . ID=CGI_10021294; scaffold695 WUBlastX DNA_Sola 240354 240434 31 - . . scaffold695 GLEAN mRNA 240354 243330 0.990093 - . ID=CGI_10023276; scaffold43562 WUBlastX DNA_TcMar-Tc1 169089 169313 115 + . . scaffold43562 GLEAN mRNA 166638 176461 0.999676 + . ID=CGI_10011038; scaffold43562 WUBlastX DNA_TcMar-Tc1 169089 169313 115 + . . scaffold43562 GLEAN mRNA 156935 180007 0.944081 - . ID=CGI_10011037; scaffold42508 WUBlastX LTR_Copia 134329 134508 87 + . . scaffold42508 GLEAN mRNA 132335 147112 0.99201 - . ID=CGI_10007033; scaffold40638 WUBlastX LTR_Gypsy-Cigr 62523 66182 1378 - . . scaffold40638 GLEAN mRNA 61308 67362 0.755375 - . ID=CGI_10004287; scaffold1741 WUBlastX DNA_Kolobok 814132 814386 51 - . . scaffold1741 GLEAN mRNA 804296 818884 1 - . ID=CGI_10024052; scaffold1703 WUBlastX DNA_PiggyBac 91646 91822 61 + . . scaffold1703 GLEAN mRNA 88691 94932 1 + . ID=CGI_10023040; scaffold22 WUBlastX LINE_RTE-X 882221 883114 106 - . . scaffold22 GLEAN mRNA 852632 884943 0.996367 + . ID=CGI_10028880; scaffold286 WUBlastX DNA_TcMar-Tc1 435167 435682 161 - . . scaffold286 GLEAN mRNA 423114 437338 0.999999 - . ID=CGI_10015973; scaffold286 WUBlastX DNA_TcMar-Tc1 435167 435682 161 - . . scaffold286 GLEAN mRNA 433158 447481 0.525246 + . ID=CGI_10015974; scaffold1631 WUBlastX LTR_Pao 166002 167453 1164 - . . scaffold1631 GLEAN mRNA 163195 172842 0.969546 - . ID=CGI_10007204; scaffold352 WUBlastX DNA_TcMar-Marin 73649 73732 34 - . . scaffold352 GLEAN mRNA 55040 89183 0.972718 + . ID=CGI_10012244; scaffold1154 WUBlastX DNA_Harbinger 403774 404304 220 + . . scaffold1154 GLEAN mRNA 400669 406858 0.774692 - . ID=CGI_10026168; scaffold58 WUBlastX LINE_L1-Tx1 738475 738615 69 + . . scaffold58 GLEAN mRNA 729182 751705 0.472398 + . ID=CGI_10023162; scaffold58 WUBlastX LINE_L1-Tx1 738630 738845 31 + . . scaffold58 GLEAN mRNA 729182 751705 0.472398 + . ID=CGI_10023162; scaffold1409 WUBlastX LINE_RTE-BovB 139016 140464 1949 - . . scaffold1409 GLEAN mRNA 123560 153776 0.210676 - . ID=CGI_10013783; scaffold1409 WUBlastX LINE_RTE-BovB 140466 140522 41 - . . scaffold1409 GLEAN mRNA 123560 153776 0.210676 - . ID=CGI_10013783; scaffold1179 WUBlastX LTR_Gypsy 23544 23819 54 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold635 WUBlastX LTR_Gypsy 115861 116391 221 - . . scaffold635 GLEAN mRNA 115264 124278 0.98729 - . ID=CGI_10008922; scaffold635 WUBlastX LTR_Gypsy 116354 116488 98 - . . scaffold635 GLEAN mRNA 115264 124278 0.98729 - . ID=CGI_10008922; scaffold43844 WUBlastX DNA_TcMar-Marin 185935 186333 96 + . . scaffold43844 GLEAN mRNA 182095 193587 0.917611 + . ID=CGI_10013151; scaffold43150 WUBlastX LINE_RTE-X 105479 107569 1253 + . . scaffold43150 GLEAN mRNA 101388 111532 0.998791 - . ID=CGI_10009032; scaffold43150 WUBlastX LINE_RTE-X 107964 109241 872 + . . scaffold43150 GLEAN mRNA 101388 111532 0.998791 - . ID=CGI_10009032; scaffold1335 WUBlastX LINE_Penelope 12557 13180 96 - . . scaffold1335 GLEAN mRNA 497 21134 0.65089 + . ID=CGI_10001395; scaffold599 WUBlastX LTR_Ngaro 32397 32705 199 - . . scaffold599 GLEAN mRNA 29083 62122 0.696781 + . ID=CGI_10021706; scaffold1277 WUBlastX LTR_Gypsy 192015 193082 228 - . . scaffold1277 GLEAN mRNA 180148 200196 1 + . ID=CGI_10008024; scaffold37760 WUBlastX LTR_DIRS 20866 21078 92 - . . scaffold37760 GLEAN mRNA 11272 38265 0.979677 + . ID=CGI_10002466; scaffold1792 WUBlastX LINE_L2 259229 259279 26 + . . scaffold1792 GLEAN mRNA 252899 271519 0.999949 - . ID=CGI_10012749; scaffold1077 WUBlastX LTR_Gypsy 347420 351349 2705 + . . scaffold1077 GLEAN mRNA 344081 378528 0.82291 + . ID=CGI_10017829; scaffold35902 WUBlastX LINE_L1 27520 28107 310 + . . scaffold35902 GLEAN mRNA 22250 28263 0.990718 - . ID=CGI_10001652; scaffold413 WUBlastX LINE_CR1-L2 736542 736811 183 + . . scaffold413 GLEAN mRNA 729457 747893 0.897312 - . ID=CGI_10022826; scaffold43500 WUBlastX LINE_RTE-X 70600 71295 234 - . . scaffold43500 GLEAN mRNA 67492 74179 0.830032 - . ID=CGI_10010614; scaffold784 WUBlastX LTR_Gypsy 306501 306614 27 - . . scaffold784 GLEAN mRNA 298825 308897 0.999951 - . ID=CGI_10024422; scaffold43182 WUBlastX DNA_En-Spm 187518 187877 64 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold38026 WUBlastX LTR_Gypsy 26921 27808 26 + . . scaffold38026 GLEAN mRNA 24330 29871 1 - . ID=CGI_10002428; scaffold396 WUBlastX LTR_Ngaro 143541 143732 82 - . . scaffold396 GLEAN mRNA 135948 145670 0.499792 + . ID=CGI_10018099; scaffold396 WUBlastX LTR_Ngaro 143749 144321 407 - . . scaffold396 GLEAN mRNA 135948 145670 0.499792 + . ID=CGI_10018099; scaffold140 WUBlastX LINE_L1-Tx1 365294 365515 45 - . . scaffold140 GLEAN mRNA 344940 369951 0.671174 - . ID=CGI_10020136; scaffold852 WUBlastX LTR_Gypsy 66624 67109 27 - . . scaffold852 GLEAN mRNA 66203 74351 1 + . ID=CGI_10012036; scaffold22 WUBlastX LTR_Pao 1073172 1073321 78 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold40836 WUBlastX LINE_RTE-X 84332 84646 41 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold54 WUBlastX LTR_Gypsy 81199 81288 31 + . . scaffold54 GLEAN mRNA 79485 84388 0.939929 + . ID=CGI_10023654; scaffold44008 WUBlastX DNA_Harbinger 36972 37076 50 - . . scaffold44008 GLEAN mRNA 36940 62806 0.508026 - . ID=CGI_10015282; scaffold406 WUBlastX LTR_Gypsy 136523 137239 74 + . . scaffold406 GLEAN mRNA 128241 151323 0.854188 - . ID=CGI_10023840; scaffold204 WUBlastX LINE_CR1-L2 320821 320964 26 + . . scaffold204 GLEAN mRNA 318709 324303 0.610548 - . ID=CGI_10026103; scaffold1286 WUBlastX LINE_CR1 114432 114674 61 - . . scaffold1286 GLEAN mRNA 98601 123345 0.396375 - . ID=CGI_10009514; scaffold58 WUBlastX DNA_Kolobok-IS4 551443 551504 38 - . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; scaffold38464 WUBlastX LINE_CR1 29156 29329 73 - . . scaffold38464 GLEAN mRNA 29156 32869 1 - . ID=CGI_10002793; scaffold541 WUBlastX LINE_L1 106056 106652 43 + . . scaffold541 GLEAN mRNA 106056 107192 0.777728 + . ID=CGI_10022378; C34726 WUBlastX DNA_Maverick 9908 10402 42 + . . C34726 GLEAN mRNA 9188 12912 0.93708 - . ID=CGI_10001353; scaffold41970 WUBlastX LINE_RTE-BovB 70760 71140 33 + . . scaffold41970 GLEAN mRNA 69893 74463 0.996819 + . ID=CGI_10005887; scaffold354 WUBlastX LINE_RTE-X 73262 73519 38 + . . scaffold354 GLEAN mRNA 46016 92159 0.140194 - . ID=CGI_10025696; scaffold698 WUBlastX LINE_RTE-X 51277 51423 76 - . . scaffold698 GLEAN mRNA 47494 76860 0.800424 + . ID=CGI_10020726; scaffold524 WUBlastX LINE_L2 450514 451032 46 - . . scaffold524 GLEAN mRNA 445295 466161 1 + . ID=CGI_10016612; scaffold236 WUBlastX LINE_L2 37740 38174 51 + . . scaffold236 GLEAN mRNA 37193 44540 0.565289 + . ID=CGI_10018135; scaffold1366 WUBlastX LTR_Gypsy 31635 31955 50 + . . scaffold1366 GLEAN mRNA 30390 31955 0.743724 + . ID=CGI_10012283; scaffold354 WUBlastX LTR_Gypsy 397485 397691 44 - . . scaffold354 GLEAN mRNA 397434 397808 0.999212 - . ID=CGI_10025719; scaffold241 WUBlastX DNA_TcMar-Tc2 288022 288378 76 - . . scaffold241 GLEAN mRNA 288013 288459 0.999802 - . ID=CGI_10025101; scaffold1247 WUBlastX LINE_L1-Tx1 112766 113230 25 + . . scaffold1247 GLEAN mRNA 96036 115392 0.95838 - . ID=CGI_10008945; scaffold1244 WUBlastX LINE_L1-Tx1 99539 99787 56 + . . scaffold1244 GLEAN mRNA 89223 101617 0.299139 + . ID=CGI_10020820; scaffold101 WUBlastX LINE_RTE-X 328629 328638 25 + . . scaffold101 GLEAN mRNA 308692 328638 0.999351 + . ID=CGI_10021645; scaffold43526 WUBlastX LINE_RTE-X 38453 38632 26 + . . scaffold43526 GLEAN mRNA 36766 62971 0.985699 + . ID=CGI_10010784; scaffold43406 WUBlastX LINE_RTE-BovB 82202 82612 68 - . . scaffold43406 GLEAN mRNA 81497 87547 0.998098 + . ID=CGI_10010210; scaffold1730 WUBlastX DNA_Maverick 115633 115959 64 + . . scaffold1730 GLEAN mRNA 113542 117424 0.494862 - . ID=CGI_10012254; scaffold626 WUBlastX DNA_hAT 189267 189407 55 + . . scaffold626 GLEAN mRNA 185398 190939 0.996819 + . ID=CGI_10019986; scaffold514 WUBlastX LTR_Gypsy 471605 471691 20 + . . scaffold514 GLEAN mRNA 444665 473776 0.661186 - . ID=CGI_10018365; scaffold164 WUBlastX LTR_Gypsy 53065 53130 20 - . . scaffold164 GLEAN mRNA 40628 54980 0.99473 - . ID=CGI_10021845; scaffold1174 WUBlastX DNA_MuDR 1072564 1072608 32 + . . scaffold1174 GLEAN mRNA 1072564 1077795 0.506907 + . ID=CGI_10026080; scaffold533 WUBlastX LINE_L1 98269 98457 67 - . . scaffold533 GLEAN mRNA 82717 99405 0.998409 - . ID=CGI_10005555; scaffold41164 WUBlastX LINE_RTE-X 86755 87042 45 + . . scaffold41164 GLEAN mRNA 83753 104051 0.95986 - . ID=CGI_10004764; scaffold1301 WUBlastX LINE_RTE-X 1244784 1244984 51 + . . scaffold1301 GLEAN mRNA 1240763 1263950 0.99974 - . ID=CGI_10027768; scaffold631 WUBlastX LINE_RTE-X 224578 224931 31 + . . scaffold631 GLEAN mRNA 219246 234334 0.970776 - . ID=CGI_10014178; scaffold1831 WUBlastX LINE_RTE-X 31785 31892 91 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-X 31785 31892 91 - . . scaffold1831 GLEAN mRNA 30321 42527 0.595655 - . ID=CGI_10002913; scaffold712 WUBlastX DNA_TcMar-Tc1 440753 441223 62 - . . scaffold712 GLEAN mRNA 407397 462275 0.613636 - . ID=CGI_10016489; scaffold41786 WUBlastX DNA_hAT-Tip100 111550 111768 59 + . . scaffold41786 GLEAN mRNA 109063 112441 0.994534 + . ID=CGI_10005626; scaffold610 WUBlastX LTR_Gypsy 129318 129509 116 - . . scaffold610 GLEAN mRNA 126484 141606 0.728666 + . ID=CGI_10021092; scaffold40134 WUBlastX LINE_RTE-X 69860 69964 40 + . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold1715 WUBlastX LINE_RTE-X 337575 337763 36 - . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold885 WUBlastX LINE_RTE-BovB 505041 505181 68 + . . scaffold885 GLEAN mRNA 501162 507823 1 + . ID=CGI_10025210; scaffold1097 WUBlastX LINE_L1 682203 682691 111 - . . scaffold1097 GLEAN mRNA 671182 687187 0.811238 + . ID=CGI_10024541; scaffold43134 WUBlastX LINE_RTE-BovB 138303 138962 58 - . . scaffold43134 GLEAN mRNA 126924 141486 0.498925 + . ID=CGI_10008896; scaffold695 WUBlastX LINE_L1 90325 90444 37 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold1651 WUBlastX DNA_TcMar-Tc1 67261 67590 91 - . . scaffold1651 GLEAN mRNA 64291 72997 0.999027 + . ID=CGI_10007888; scaffold36898 WUBlastX LTR_Pao 712 837 110 + . . scaffold36898 GLEAN mRNA 700 1422 0.573259 - . ID=CGI_10002175; scaffold1323 WUBlastX LTR_DIRS 77405 78091 69 - . . scaffold1323 GLEAN mRNA 62759 90642 0.99865 + . ID=CGI_10009082; scaffold689 WUBlastX LTR_Gypsy 355254 356144 88 + . . scaffold689 GLEAN mRNA 335137 371615 0.991732 - . ID=CGI_10014831; scaffold557 WUBlastX LINE_Jockey 401696 401776 21 + . . scaffold557 GLEAN mRNA 401528 413927 0.99928 + . ID=CGI_10017980; scaffold222 WUBlastX LINE_RTE-BovB 139578 139772 25 - . . scaffold222 GLEAN mRNA 134195 141016 0.626444 - . ID=CGI_10007124; scaffold1233 WUBlastX LTR_Ngaro 7663 7875 119 - . . scaffold1233 GLEAN mRNA 818 16086 0.387616 - . ID=CGI_10003098; scaffold802 WUBlastX LINE_L1-Tx1 141216 141674 81 + . . scaffold802 GLEAN mRNA 137512 196873 0.499283 - . ID=CGI_10015727; C33148 WUBlastX DNA_hAT 10045 10938 68 - . . C33148 GLEAN mRNA 5142 11739 0.999994 - . ID=CGI_10001003; scaffold38058 WUBlastX LTR_Gypsy 4882 4995 70 - . . scaffold38058 GLEAN mRNA 3486 8173 0.999159 - . ID=CGI_10002595; scaffold865 WUBlastX LTR_Ngaro 19112 19495 125 - . . scaffold865 GLEAN mRNA 7384 21120 0.465325 - . ID=CGI_10002639; scaffold631 WUBlastX LINE_RTE-X 96791 97177 100 + . . scaffold631 GLEAN mRNA 95661 117923 0.999624 - . ID=CGI_10014170; scaffold1249 WUBlastX LINE_CR1 260159 260878 55 - . . scaffold1249 GLEAN mRNA 253670 268651 0.545459 - . ID=CGI_10019058; scaffold1066 WUBlastX LTR_Gypsy-Cigr 168620 169012 131 + . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold1831 WUBlastX LINE_RTE-BovB 1153 1416 86 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold106 WUBlastX LTR_Gypsy 654779 654970 28 - . . scaffold106 GLEAN mRNA 650785 658770 0.999129 - . ID=CGI_10022052; scaffold1670 WUBlastX LTR_DIRS 456585 456908 152 + . . scaffold1670 GLEAN mRNA 448842 475285 0.99939 + . ID=CGI_10017627; scaffold59 WUBlastX RC_Helitron 239340 239564 104 + . . scaffold59 GLEAN mRNA 230821 243525 0.988711 - . ID=CGI_10011278; scaffold1237 WUBlastX LTR_Gypsy 222557 223474 182 - . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold1237 WUBlastX LTR_Gypsy 225997 226269 148 - . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold38374 WUBlastX LTR_Gypsy-Cigr 17159 17557 97 + . . scaffold38374 GLEAN mRNA 8302 17987 0.957619 + . ID=CGI_10002746; scaffold1188 WUBlastX LTR_Ngaro 289167 290327 735 + . . scaffold1188 GLEAN mRNA 281129 295835 0.924496 + . ID=CGI_10025467; scaffold145 WUBlastX LTR_DIRS 1152507 1154252 908 + . . scaffold145 GLEAN mRNA 1139972 1169601 0.998984 + . ID=CGI_10026576; scaffold240 WUBlastX LINE_Penelope 170763 171167 106 + . . scaffold240 GLEAN mRNA 169762 171676 1 + . ID=CGI_10007851; scaffold1558 WUBlastX LINE_L1 41701 41799 52 - . . scaffold1558 GLEAN mRNA 34398 73907 0.517269 - . ID=CGI_10004094; scaffold334 WUBlastX LTR_Ngaro 788851 789570 521 - . . scaffold334 GLEAN mRNA 767755 789598 0.645847 - . ID=CGI_10025962; scaffold334 WUBlastX LTR_Ngaro 789572 789598 520 - . . scaffold334 GLEAN mRNA 767755 789598 0.645847 - . ID=CGI_10025962; scaffold619 WUBlastX LINE_Jockey 145152 145508 27 - . . scaffold619 GLEAN mRNA 133305 165039 0.859619 - . ID=CGI_10025755; scaffold1565 WUBlastX LINE_L1-Tx1 6999 7469 30 - . . scaffold1565 GLEAN mRNA 460 9199 1 + . ID=CGI_10000778; scaffold6 WUBlastX LINE_L2 671555 672604 463 - . . scaffold6 GLEAN mRNA 669450 677435 1 + . ID=CGI_10022331; scaffold6 WUBlastX LINE_L2 672558 673292 535 - . . scaffold6 GLEAN mRNA 669450 677435 1 + . ID=CGI_10022331; scaffold43358 WUBlastX LTR_Gypsy 133879 134970 137 + . . scaffold43358 GLEAN mRNA 123775 136005 0.949704 + . ID=CGI_10009976; scaffold113 WUBlastX DNA_MuDR 590020 590142 20 - . . scaffold113 GLEAN mRNA 582017 590807 0.980826 - . ID=CGI_10021294; scaffold86 WUBlastX LINE_L1-Tx1 218060 218227 30 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold507 WUBlastX LTR_Ngaro 41925 42806 76 - . . scaffold507 GLEAN mRNA 41380 65568 0.398486 - . ID=CGI_10019084; scaffold37760 WUBlastX LTR_DIRS 20495 20941 188 - . . scaffold37760 GLEAN mRNA 11272 38265 0.979677 + . ID=CGI_10002466; scaffold1301 WUBlastX DNA_MuDR 796383 796631 110 - . . scaffold1301 GLEAN mRNA 795655 798380 0.702584 - . ID=CGI_10027744; scaffold1301 WUBlastX DNA_MuDR 796383 796631 110 - . . scaffold1301 GLEAN mRNA 781075 819646 0.518044 + . ID=CGI_10027743; scaffold780 WUBlastX LTR_Ngaro 966317 966928 125 - . . scaffold780 GLEAN mRNA 959842 972028 0.999936 - . ID=CGI_10024749; scaffold1799 WUBlastX LTR_Ngaro 57876 58031 81 - . . scaffold1799 GLEAN mRNA 46929 66946 0.999949 - . ID=CGI_10003631; scaffold1578 WUBlastX LTR_Pao 65811 65909 34 + . . scaffold1578 GLEAN mRNA 44226 72498 0.998909 - . ID=CGI_10008160; scaffold43686 WUBlastX LTR_Gypsy 187115 187630 206 - . . scaffold43686 GLEAN mRNA 172665 193661 0.978405 - . ID=CGI_10011758; scaffold39974 WUBlastX LTR_Ngaro 69172 69630 149 + . . scaffold39974 GLEAN mRNA 67732 80297 0.969362 + . ID=CGI_10003760; scaffold773 WUBlastX DNA_Maverick 239008 239511 207 - . . scaffold773 GLEAN mRNA 235107 267865 0.138953 - . ID=CGI_10011348; scaffold459 WUBlastX DNA_Merlin 52354 52896 117 - . . scaffold459 GLEAN mRNA 48177 82844 0.45554 + . ID=CGI_10018167; scaffold90 WUBlastX DNA_Harbinger 269903 270115 35 - . . scaffold90 GLEAN mRNA 265227 282021 0.629226 + . ID=CGI_10015170; scaffold90 WUBlastX DNA_Harbinger 270241 270378 102 - . . scaffold90 GLEAN mRNA 265227 282021 0.629226 + . ID=CGI_10015170; scaffold90 WUBlastX DNA_Harbinger 270805 270996 129 - . . scaffold90 GLEAN mRNA 265227 282021 0.629226 + . ID=CGI_10015170; scaffold1532 WUBlastX LTR_Gypsy 393539 393670 31 + . . scaffold1532 GLEAN mRNA 391874 403369 0.462643 + . ID=CGI_10028249; scaffold126 WUBlastX LINE_Rex-Babar 219076 220056 156 + . . scaffold126 GLEAN mRNA 215728 221364 0.491639 + . ID=CGI_10019186; scaffold142 WUBlastX LINE_CR1 157681 157685 220 - . . scaffold142 GLEAN mRNA 157089 157685 0.986937 - . ID=CGI_10026755; scaffold86 WUBlastX DNA_Academ 399876 400295 182 + . . scaffold86 GLEAN mRNA 398522 403007 0.217037 + . ID=CGI_10028152; scaffold964 WUBlastX LTR_Ngaro 223368 223991 185 + . . scaffold964 GLEAN mRNA 212100 240231 0.999794 - . ID=CGI_10009735; scaffold143 WUBlastX LINE_L1-Tx1 193769 194134 279 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold1186 WUBlastX LINE_L1-Tx1 236970 237062 25 + . . scaffold1186 GLEAN mRNA 224167 244631 0.351511 - . ID=CGI_10010599; scaffold1318 WUBlastX DNA_TcMar-Tc1 48585 48773 72 + . . scaffold1318 GLEAN mRNA 47679 59079 0.328272 + . ID=CGI_10008644; scaffold784 WUBlastX LINE_RTE-BovB 303602 303985 493 + . . scaffold784 GLEAN mRNA 298825 308897 0.999951 - . ID=CGI_10024422; scaffold784 WUBlastX LINE_RTE-BovB 304251 304310 23 + . . scaffold784 GLEAN mRNA 298825 308897 0.999951 - . ID=CGI_10024422; scaffold784 WUBlastX LINE_RTE-BovB 301210 302145 699 + . . scaffold784 GLEAN mRNA 298825 308897 0.999951 - . ID=CGI_10024422; scaffold784 WUBlastX LINE_RTE-BovB 302142 303272 544 + . . scaffold784 GLEAN mRNA 298825 308897 0.999951 - . ID=CGI_10024422; scaffold784 WUBlastX LINE_RTE-BovB 303159 303419 287 + . . scaffold784 GLEAN mRNA 298825 308897 0.999951 - . ID=CGI_10024422; scaffold1532 WUBlastX LTR_Gypsy 988094 988651 218 + . . scaffold1532 GLEAN mRNA 980578 997386 0.999875 - . ID=CGI_10028278; scaffold962 WUBlastX LINE_RTE-BovB 898522 898845 151 - . . scaffold962 GLEAN mRNA 895122 910659 0.455688 + . ID=CGI_10027670; scaffold1244 WUBlastX LINE_Penelope 570992 572014 163 - . . scaffold1244 GLEAN mRNA 508938 634898 0.0392589 - . ID=CGI_10020838; scaffold933 WUBlastX LINE_RTE-X 321382 321417 23 + . . scaffold933 GLEAN mRNA 320919 329030 0.990126 + . ID=CGI_10016722; scaffold42890 WUBlastX DNA_Sola 183876 184016 26 - . . scaffold42890 GLEAN mRNA 182304 199068 0.438528 - . ID=CGI_10008045; scaffold40154 WUBlastX LTR_Ngaro 27378 27485 21 - . . scaffold40154 GLEAN mRNA 26301 32486 0.434456 - . ID=CGI_10003875; scaffold737 WUBlastX LINE_L1-Tx1 294014 294955 142 - . . scaffold737 GLEAN mRNA 290958 298439 0.807998 - . ID=CGI_10014317; scaffold1179 WUBlastX LTR_Gypsy 23550 23741 69 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold39758 WUBlastX LINE_RTE-BovB 63049 63354 36 - . . scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold1322 WUBlastX LTR_Ngaro 299932 300048 49 - . . scaffold1322 GLEAN mRNA 265135 302274 0.499623 + . ID=CGI_10019472; scaffold1191 WUBlastX DNA_NOF 76952 77119 101 - . . scaffold1191 GLEAN mRNA 65394 88286 0.517666 - . ID=CGI_10005211; scaffold1191 WUBlastX DNA_NOF 77314 77529 96 - . . scaffold1191 GLEAN mRNA 65394 88286 0.517666 - . ID=CGI_10005211; scaffold1191 WUBlastX DNA_NOF 77532 77597 51 - . . scaffold1191 GLEAN mRNA 65394 88286 0.517666 - . ID=CGI_10005211; scaffold1191 WUBlastX DNA_NOF 78155 78322 59 - . . scaffold1191 GLEAN mRNA 65394 88286 0.517666 - . ID=CGI_10005211; scaffold588 WUBlastX DNA_Harbinger 135034 136002 338 + . . scaffold588 GLEAN mRNA 132834 155339 0.82921 + . ID=CGI_10016211; scaffold1670 WUBlastX LINE_L1 463663 465120 22 - . . scaffold1670 GLEAN mRNA 448842 475285 0.99939 + . ID=CGI_10017627; scaffold1670 WUBlastX LINE_L1-Tx1 465350 465709 72 - . . scaffold1670 GLEAN mRNA 448842 475285 0.99939 + . ID=CGI_10017627; scaffold1706 WUBlastX LINE_L1-Tx1 45834 46430 261 + . . scaffold1706 GLEAN mRNA 37786 56373 0.330403 - . ID=CGI_10003662; scaffold1706 WUBlastX LINE_L1-Tx1 47066 47497 94 + . . scaffold1706 GLEAN mRNA 37786 56373 0.330403 - . ID=CGI_10003662; scaffold1324 WUBlastX DNA_TcMar-Tc1 323866 324840 318 + . . scaffold1324 GLEAN mRNA 312434 327926 0.84986 - . ID=CGI_10018395; scaffold37712 WUBlastX DNA_Harbinger 15906 16007 48 - . . scaffold37712 GLEAN mRNA 15194 37462 0.403354 - . ID=CGI_10002463; scaffold610 WUBlastX LTR_Gypsy 568603 569244 105 + . . scaffold610 GLEAN mRNA 561259 570035 0.686247 - . ID=CGI_10021130; scaffold145 WUBlastX LINE_RTE-BovB 1137477 1137575 56 - . . scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold145 WUBlastX LINE_RTE-BovB 1138259 1138369 95 - . . scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold145 WUBlastX LINE_RTE-BovB 1139296 1139721 32 - . . scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold251 WUBlastX LTR_DIRS 38592 39527 403 + . . scaffold251 GLEAN mRNA 16871 39741 0.998838 - . ID=CGI_10005216; scaffold251 WUBlastX LTR_DIRS 38592 39527 403 + . . scaffold251 GLEAN mRNA 27105 44764 0.0632149 + . ID=CGI_10005217; scaffold1897 WUBlastX LINE_RTE-X 200171 201295 333 + . . scaffold1897 GLEAN mRNA 190471 249775 0.317357 - . ID=CGI_10020917; scaffold43868 WUBlastX DNA_hAT 16516 16689 103 + . . scaffold43868 GLEAN mRNA 12276 17376 0.993028 - . ID=CGI_10013648; scaffold43868 WUBlastX DNA_hAT 16516 16689 103 + . . scaffold43868 GLEAN mRNA 14140 17333 1 + . ID=CGI_10013649; scaffold43868 WUBlastX DNA_hAT 15843 16211 283 + . . scaffold43868 GLEAN mRNA 12276 17376 0.993028 - . ID=CGI_10013648; scaffold43868 WUBlastX DNA_hAT 15843 16211 283 + . . scaffold43868 GLEAN mRNA 14140 17333 1 + . ID=CGI_10013649; scaffold1214 WUBlastX LTR_Ngaro 249910 250071 40 - . . scaffold1214 GLEAN mRNA 241265 253884 0.274712 + . ID=CGI_10015480; scaffold1067 WUBlastX DNA_Sola 102599 102775 107 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold1067 WUBlastX DNA_Sola 104287 104616 44 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold57 WUBlastX DNA_hAT 292608 292799 104 - . . scaffold57 GLEAN mRNA 289160 294391 1 - . ID=CGI_10020549; scaffold57 WUBlastX DNA_hAT 291582 291908 120 - . . scaffold57 GLEAN mRNA 289160 294391 1 - . ID=CGI_10020549; scaffold1123 WUBlastX LINE_RTE-BovB 13920 14234 226 + . . scaffold1123 GLEAN mRNA 4950 19691 0.554793 + . ID=CGI_10018729; scaffold337 WUBlastX RC_Helitron 915301 916155 604 - . . scaffold337 GLEAN mRNA 912502 926173 0.999981 - . ID=CGI_10028087; scaffold39472 WUBlastX LTR_DIRS 37385 37957 54 + . . scaffold39472 GLEAN mRNA 36257 64378 0.862936 + . ID=CGI_10003397; scaffold39472 WUBlastX LTR_DIRS 38040 38555 320 + . . scaffold39472 GLEAN mRNA 36257 64378 0.862936 + . ID=CGI_10003397; scaffold39472 WUBlastX LTR_DIRS 38525 38902 186 + . . scaffold39472 GLEAN mRNA 36257 64378 0.862936 + . ID=CGI_10003397; scaffold39472 WUBlastX LTR_DIRS 38899 39846 118 + . . scaffold39472 GLEAN mRNA 36257 64378 0.862936 + . ID=CGI_10003397; scaffold43396 WUBlastX LTR_Ngaro 235909 236871 394 - . . scaffold43396 GLEAN mRNA 229822 241717 0.993815 + . ID=CGI_10010156; scaffold619 WUBlastX LINE_RTE-X 144633 145454 441 - . . scaffold619 GLEAN mRNA 133305 165039 0.859619 - . ID=CGI_10025755; scaffold39758 WUBlastX LINE_RTE-BovB 63049 63201 71 - . . scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold40134 WUBlastX LTR_Gypsy 42459 42632 21 - . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold1813 WUBlastX LINE_L2 113302 113505 35 - . . scaffold1813 GLEAN mRNA 106186 113865 0.957305 + . ID=CGI_10005994; scaffold1262 WUBlastX LTR_Gypsy 378165 378323 75 + . . scaffold1262 GLEAN mRNA 371816 387218 0.801532 - . ID=CGI_10018947; scaffold165 WUBlastX LINE_L2 36214 36663 31 - . . scaffold165 GLEAN mRNA 35293 36948 0.531436 - . ID=CGI_10015310; scaffold1317 WUBlastX DNA_Crypton 63271 63528 39 + . . scaffold1317 GLEAN mRNA 63271 63657 0.481188 + . ID=CGI_10006055; scaffold1123 WUBlastX DNA_IS4EU 335225 335551 26 - . . scaffold1123 GLEAN mRNA 333329 335551 0.999996 - . ID=CGI_10018737; scaffold39120 WUBlastX DNA_Kolobok-IS4 47978 48259 27 - . . scaffold39120 GLEAN mRNA 36514 50111 0.858496 + . ID=CGI_10003188; scaffold517 WUBlastX LINE_CR1 200528 200929 46 - . . scaffold517 GLEAN mRNA 188444 202746 0.541804 + . ID=CGI_10008984; scaffold42770 WUBlastX LINE_L1 16943 17152 35 - . . scaffold42770 GLEAN mRNA 14131 34729 0.562742 - . ID=CGI_10007687; scaffold547 WUBlastX DNA_TcMar-Tigge 206733 207044 64 - . . scaffold547 GLEAN mRNA 206215 217037 0.996504 + . ID=CGI_10018847; scaffold305 WUBlastX DNA_MuDR 440183 440494 43 - . . scaffold305 GLEAN mRNA 436325 448362 0.78661 - . ID=CGI_10019140; scaffold352 WUBlastX LINE_Penelope 177272 177526 55 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold146 WUBlastX LINE_L1 588959 589111 40 + . . scaffold146 GLEAN mRNA 588959 589360 0.999984 + . ID=CGI_10024914; scaffold1834 WUBlastX LINE_L1 42165 42383 61 + . . scaffold1834 GLEAN mRNA 40709 65850 0.846288 + . ID=CGI_10016651; scaffold1066 WUBlastX LTR_Pao 192745 193107 80 - . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold634 WUBlastX LTR_Gypsy 14255 14755 66 - . . scaffold634 GLEAN mRNA 13613 16152 0.502171 - . ID=CGI_10004699; scaffold634 WUBlastX LTR_Gypsy 14255 14755 66 - . . scaffold634 GLEAN mRNA 12476 30002 0.999899 + . ID=CGI_10004698; scaffold1862 WUBlastX DNA_IS4EU 658552 658866 51 + . . scaffold1862 GLEAN mRNA 655247 661635 1 - . ID=CGI_10021923; scaffold150 WUBlastX DNA_Kolobok-Hyd 1216149 1216373 25 + . . scaffold150 GLEAN mRNA 1213916 1217122 0.630659 + . ID=CGI_10028662; scaffold150 WUBlastX DNA_Kolobok-Hyd 1216149 1216373 25 + . . scaffold150 GLEAN mRNA 1205286 1224549 1 - . ID=CGI_10028661; scaffold1831 WUBlastX LINE_L1 26579 26896 25 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold39778 WUBlastX LINE_RTE-X 62794 63021 69 - . . scaffold39778 GLEAN mRNA 56712 68685 0.806384 - . ID=CGI_10003612; scaffold368 WUBlastX DNA_Harbinger 31236 31544 48 + . . scaffold368 GLEAN mRNA 27692 45024 0.754759 - . ID=CGI_10018691; scaffold150 WUBlastX DNA_Kolobok-Hyd 1214982 1215266 30 + . . scaffold150 GLEAN mRNA 1213916 1217122 0.630659 + . ID=CGI_10028662; scaffold150 WUBlastX DNA_Kolobok-Hyd 1214982 1215266 30 + . . scaffold150 GLEAN mRNA 1205286 1224549 1 - . ID=CGI_10028661; scaffold853 WUBlastX DNA_Kolobok-Hyd 206865 207149 30 + . . scaffold853 GLEAN mRNA 204099 212863 1 - . ID=CGI_10017494; scaffold853 WUBlastX DNA_Kolobok-Hyd 206865 207149 30 + . . scaffold853 GLEAN mRNA 206619 210945 0.253956 + . ID=CGI_10017495; scaffold40928 WUBlastX LINE_CR1 40924 41166 71 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold1533 WUBlastX LINE_CR1-L2 95240 95596 20 - . . scaffold1533 GLEAN mRNA 91991 98571 1 + . ID=CGI_10012868; scaffold760 WUBlastX DNA_hAT 812593 813084 80 + . . scaffold760 GLEAN mRNA 811669 818661 0.54434 + . ID=CGI_10024016; scaffold1188 WUBlastX LTR_Copia 170517 170732 20 - . . scaffold1188 GLEAN mRNA 159311 176924 0.555609 - . ID=CGI_10025460; scaffold1682 WUBlastX LINE_RTE-X 206377 206724 58 + . . scaffold1682 GLEAN mRNA 191866 233299 0.316426 - . ID=CGI_10016049; scaffold606 WUBlastX LINE_RTE-BovB 296802 297104 104 + . . scaffold606 GLEAN mRNA 296790 297152 1 + . ID=CGI_10012954; scaffold784 WUBlastX LINE_CR1-L2 624445 624489 45 - . . scaffold784 GLEAN mRNA 624445 639860 0.999415 + . ID=CGI_10024437; scaffold1442 WUBlastX LINE_CR1 38562 38698 32 - . . scaffold1442 GLEAN mRNA 28034 38698 1 - . ID=CGI_10003584; scaffold42770 WUBlastX LINE_L1 16555 16707 35 - . . scaffold42770 GLEAN mRNA 14131 34729 0.562742 - . ID=CGI_10007687; scaffold41358 WUBlastX DNA_TcMar-Tc1 110732 110905 31 + . . scaffold41358 GLEAN mRNA 104455 115098 0.650923 - . ID=CGI_10004976; scaffold41358 WUBlastX DNA_TcMar-Tc1 112017 112046 20 + . . scaffold41358 GLEAN mRNA 104455 115098 0.650923 - . ID=CGI_10004976; scaffold121 WUBlastX LINE_L1-Tx1 509658 510074 97 - . . scaffold121 GLEAN mRNA 504967 519244 0.995336 - . ID=CGI_10025657; scaffold1698 WUBlastX LINE_Penelope 558782 559057 83 - . . scaffold1698 GLEAN mRNA 555176 595908 0.182915 - . ID=CGI_10019393; scaffold43396 WUBlastX LINE_Penelope 186391 186744 75 + . . scaffold43396 GLEAN mRNA 168401 199028 0.999996 + . ID=CGI_10010150; scaffold1669 WUBlastX DNA_Kolobok 9876 9923 40 + . . scaffold1669 GLEAN mRNA 1110 11588 0.999673 - . ID=CGI_10001412; scaffold1136 WUBlastX LINE_RTE-X 46774 46827 21 + . . scaffold1136 GLEAN mRNA 45613 63125 0.999895 + . ID=CGI_10003080; scaffold532 WUBlastX LINE_RTE-X 166086 166289 99 + . . scaffold532 GLEAN mRNA 155713 169161 0.907096 - . ID=CGI_10012528; scaffold1036 WUBlastX DNA_Harbinger 597286 597642 131 + . . scaffold1036 GLEAN mRNA 594409 600469 0.995654 - . ID=CGI_10019975; scaffold1101 WUBlastX LINE_RTE-X 527659 528369 61 - . . scaffold1101 GLEAN mRNA 521845 536003 0.859729 + . ID=CGI_10023031; scaffold43726 WUBlastX LINE_RTE-X 160480 160785 90 - . . scaffold43726 GLEAN mRNA 145496 185415 0.997652 - . ID=CGI_10012023; scaffold35180 WUBlastX LINE_RTE-X 10423 10476 21 + . . scaffold35180 GLEAN mRNA 904 21932 0.992496 - . ID=CGI_10001433; scaffold42 WUBlastX LINE_CR1 205173 205307 31 + . . scaffold42 GLEAN mRNA 204584 223955 0.545569 + . ID=CGI_10018912; scaffold501 WUBlastX LINE_L2 267968 268126 87 + . . scaffold501 GLEAN mRNA 267968 268585 0.999995 + . ID=CGI_10027511; scaffold240 WUBlastX LINE_Penelope 170639 170818 58 + . . scaffold240 GLEAN mRNA 169762 171676 1 + . ID=CGI_10007851; scaffold578 WUBlastX LINE_RTE-X 355807 356352 24 + . . scaffold578 GLEAN mRNA 348664 361929 0.458006 + . ID=CGI_10015130; scaffold962 WUBlastX LINE_RTE-X 975104 975370 102 + . . scaffold962 GLEAN mRNA 965990 978537 0.921741 - . ID=CGI_10027674; scaffold496 WUBlastX LTR_Ngaro 285553 286002 94 + . . scaffold496 GLEAN mRNA 284554 289142 0.934292 + . ID=CGI_10022451; scaffold496 WUBlastX LTR_Ngaro 286095 286247 39 + . . scaffold496 GLEAN mRNA 284554 289142 0.934292 + . ID=CGI_10022451; scaffold789 WUBlastX LINE_R2-Hero 95750 96331 139 + . . scaffold789 GLEAN mRNA 76148 97050 0.642884 - . ID=CGI_10017181; scaffold733 WUBlastX LINE_Penelope 513415 513837 127 - . . scaffold733 GLEAN mRNA 408619 548638 0.684241 + . ID=CGI_10025876; scaffold1066 WUBlastX LTR_Ngaro 179464 179769 129 - . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold39196 WUBlastX DNA_Merlin 50161 50250 34 + . . scaffold39196 GLEAN mRNA 18014 59804 0.5589 - . ID=CGI_10003215; scaffold39196 WUBlastX DNA_Merlin 50161 50250 34 + . . scaffold39196 GLEAN mRNA 39677 52332 0.583111 + . ID=CGI_10003218; scaffold664 WUBlastX DNA_TcMar-Tc1 393946 394209 128 - . . scaffold664 GLEAN mRNA 373118 396523 0.330346 - . ID=CGI_10021447; scaffold1788 WUBlastX LINE_CR1-L2 17847 18014 89 + . . scaffold1788 GLEAN mRNA 1232 23874 0.618655 + . ID=CGI_10019910; scaffold1792 WUBlastX LTR_Gypsy 331097 331663 316 + . . scaffold1792 GLEAN mRNA 322843 336201 0.992772 - . ID=CGI_10012752; scaffold1188 WUBlastX LTR_Ngaro 288746 289171 238 + . . scaffold1188 GLEAN mRNA 281129 295835 0.924496 + . ID=CGI_10025467; scaffold1525 WUBlastX LINE_L1-Tx1 40070 40690 389 + . . scaffold1525 GLEAN mRNA 22768 58796 0.21079 + . ID=CGI_10013853; scaffold1525 WUBlastX LINE_L1-Tx1 40692 41075 232 + . . scaffold1525 GLEAN mRNA 22768 58796 0.21079 + . ID=CGI_10013853; scaffold1525 WUBlastX LINE_L1-Tx1 41165 41992 162 + . . scaffold1525 GLEAN mRNA 22768 58796 0.21079 + . ID=CGI_10013853; scaffold42364 WUBlastX LINE_Rex-Babar 76010 76390 35 - . . scaffold42364 GLEAN mRNA 72172 88504 0.999923 + . ID=CGI_10006723; scaffold597 WUBlastX LINE_CR1 35579 35911 109 - . . scaffold597 GLEAN mRNA 30096 40610 0.999676 + . ID=CGI_10004927; scaffold597 WUBlastX LINE_CR1 37267 37599 109 - . . scaffold597 GLEAN mRNA 30096 40610 0.999676 + . ID=CGI_10004927; scaffold401 WUBlastX LINE_RTE-X 156382 156531 33 - . . scaffold401 GLEAN mRNA 151217 157765 0.728444 + . ID=CGI_10006994; scaffold1066 WUBlastX LTR_Gypsy 175237 175908 203 + . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold1132 WUBlastX LINE_CR1 423205 423516 136 + . . scaffold1132 GLEAN mRNA 413110 426704 0.743295 - . ID=CGI_10023318; scaffold191 WUBlastX LINE_I 209083 209229 21 - . . scaffold191 GLEAN mRNA 205783 209379 0.997333 - . ID=CGI_10022416; scaffold35406 WUBlastX DNA_P 17929 18162 54 - . . scaffold35406 GLEAN mRNA 1505 18996 0.688101 - . ID=CGI_10001499; scaffold113 WUBlastX LINE_L2-Hydra 616232 616393 23 - . . scaffold113 GLEAN mRNA 609492 622798 0.993341 - . ID=CGI_10021297; scaffold38210 WUBlastX LINE_L2 22291 22977 110 + . . scaffold38210 GLEAN mRNA 7747 30035 0.24289 - . ID=CGI_10002673; scaffold1360 WUBlastX LINE_RTE-X 734269 734706 141 - . . scaffold1360 GLEAN mRNA 732870 739512 0.95405 + . ID=CGI_10022670; scaffold1189 WUBlastX LINE_RTE-X 774029 774160 27 - . . scaffold1189 GLEAN mRNA 763568 774596 0.392072 + . ID=CGI_10023832; scaffold352 WUBlastX DNA_TcMar-Marin 73726 74361 123 - . . scaffold352 GLEAN mRNA 55040 89183 0.972718 + . ID=CGI_10012244; scaffold827 WUBlastX LINE_I 49030 49060 21 - . . scaffold827 GLEAN mRNA 49030 49467 0.615967 - . ID=CGI_10007009; scaffold86 WUBlastX DNA_Kolobok 151163 151312 56 - . . scaffold86 GLEAN mRNA 141744 153852 0.999675 - . ID=CGI_10028139; scaffold43708 WUBlastX LINE_CR1 131971 132642 170 - . . scaffold43708 GLEAN mRNA 129367 163757 0.948572 + . ID=CGI_10011970; scaffold164 WUBlastX LINE_RTE-X 167302 167973 149 + . . scaffold164 GLEAN mRNA 165506 168961 1 - . ID=CGI_10021852; scaffold474 WUBlastX LTR_Pao 41714 42400 237 - . . scaffold474 GLEAN mRNA 31807 44448 0.711345 + . ID=CGI_10007591; scaffold352 WUBlastX LTR_Gypsy-Cigr 151374 153461 1279 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold1179 WUBlastX LTR_Gypsy 22183 22875 202 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold597 WUBlastX LINE_RTE-X 37616 38089 143 - . . scaffold597 GLEAN mRNA 30096 40610 0.999676 + . ID=CGI_10004927; scaffold102 WUBlastX LTR_Pao 713371 714630 130 + . . scaffold102 GLEAN mRNA 701339 715746 0.984575 + . ID=CGI_10028447; scaffold40134 WUBlastX DNA_Harbinger 29537 29767 83 + . . scaffold40134 GLEAN mRNA 26792 31648 0.922114 - . ID=CGI_10003881; scaffold43122 WUBlastX LINE_Penelope 135339 135494 46 + . . scaffold43122 GLEAN mRNA 115837 148634 0.68095 - . ID=CGI_10008940; scaffold43122 WUBlastX LINE_Penelope 135500 136057 182 + . . scaffold43122 GLEAN mRNA 115837 148634 0.68095 - . ID=CGI_10008940; scaffold601 WUBlastX LINE_L2 1229529 1232717 1742 + . . scaffold601 GLEAN mRNA 1228306 1237789 1 - . ID=CGI_10026862; scaffold544 WUBlastX LTR_Gypsy-Cigr 728492 731581 2080 - . . scaffold544 GLEAN mRNA 727518 748903 0.982522 - . ID=CGI_10022583; scaffold1800 WUBlastX LTR_Gypsy 309587 309925 235 + . . scaffold1800 GLEAN mRNA 309587 323793 0.999996 + . ID=CGI_10016406; scaffold1800 WUBlastX LTR_Gypsy 310155 312197 1308 + . . scaffold1800 GLEAN mRNA 309587 323793 0.999996 + . ID=CGI_10016406; scaffold780 WUBlastX LTR_Ngaro 967427 967678 83 - . . scaffold780 GLEAN mRNA 959842 972028 0.999936 - . ID=CGI_10024749; scaffold1821 WUBlastX LINE_RTE-BovB 171559 171858 290 + . . scaffold1821 GLEAN mRNA 167929 177659 0.681651 - . ID=CGI_10011291; scaffold175 WUBlastX LINE_Penelope 160455 161198 274 + . . scaffold175 GLEAN mRNA 158189 167433 0.999624 + . ID=CGI_10021311; scaffold43920 WUBlastX LINE_L1-Tx1 183485 183775 140 - . . scaffold43920 GLEAN mRNA 174629 203515 0.493317 + . ID=CGI_10013994; scaffold43920 WUBlastX LINE_L1-Tx1 183772 184209 173 - . . scaffold43920 GLEAN mRNA 174629 203515 0.493317 + . ID=CGI_10013994; scaffold252 WUBlastX LINE_L1-Tx1 194395 194766 93 + . . scaffold252 GLEAN mRNA 193535 212637 0.650781 - . ID=CGI_10010768; scaffold252 WUBlastX LINE_L1-Tx1 196213 196467 43 + . . scaffold252 GLEAN mRNA 193535 212637 0.650781 - . ID=CGI_10010768; scaffold569 WUBlastX LTR_DIRS 40848 41591 99 + . . scaffold569 GLEAN mRNA 32554 62247 0.974978 + . ID=CGI_10009494; scaffold569 WUBlastX LTR_DIRS 41549 42334 205 + . . scaffold569 GLEAN mRNA 32554 62247 0.974978 + . ID=CGI_10009494; scaffold219 WUBlastX LINE_L1-Tx1 129251 129643 77 + . . scaffold219 GLEAN mRNA 124764 139591 0.613723 - . ID=CGI_10016614; scaffold41660 WUBlastX LINE_L1-Tx1 113735 114370 131 - . . scaffold41660 GLEAN mRNA 108736 121603 0.999676 + . ID=CGI_10005401; scaffold117 WUBlastX LINE_CR1 52014 52403 176 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold1154 WUBlastX LTR_Ngaro 368833 369360 247 + . . scaffold1154 GLEAN mRNA 360464 375818 0.544657 - . ID=CGI_10026164; scaffold1154 WUBlastX LTR_Ngaro 368833 369360 247 + . . scaffold1154 GLEAN mRNA 365982 369978 0.558383 + . ID=CGI_10026165; scaffold40928 WUBlastX LINE_CR1 40616 40774 101 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold37532 WUBlastX LTR_Gypsy 31746 32144 133 - . . scaffold37532 GLEAN mRNA 24867 43092 0.82218 + . ID=CGI_10002401; scaffold37532 WUBlastX LTR_Gypsy 32165 32374 126 - . . scaffold37532 GLEAN mRNA 24867 43092 0.82218 + . ID=CGI_10002401; scaffold37532 WUBlastX LTR_Gypsy 32395 32598 150 - . . scaffold37532 GLEAN mRNA 24867 43092 0.82218 + . ID=CGI_10002401; scaffold756 WUBlastX LINE_L2 423332 423931 27 - . . scaffold756 GLEAN mRNA 412445 424957 0.468321 - . ID=CGI_10016466; scaffold1132 WUBlastX LINE_RTE-X 424793 424888 60 + . . scaffold1132 GLEAN mRNA 413110 426704 0.743295 - . ID=CGI_10023318; scaffold847 WUBlastX LTR_Pao 279310 280368 155 - . . scaffold847 GLEAN mRNA 273681 282893 0.998253 - . ID=CGI_10022270; scaffold230 WUBlastX LTR_Gypsy 251973 252386 252 + . . scaffold230 GLEAN mRNA 249649 283875 0.439776 - . ID=CGI_10011254; scaffold230 WUBlastX LTR_Gypsy 252391 252714 274 + . . scaffold230 GLEAN mRNA 249649 283875 0.439776 - . ID=CGI_10011254; scaffold230 WUBlastX LTR_Gypsy 252704 252826 66 + . . scaffold230 GLEAN mRNA 249649 283875 0.439776 - . ID=CGI_10011254; scaffold410 WUBlastX LINE_CR1 265586 265630 22 + . . scaffold410 GLEAN mRNA 261101 270903 0.399222 + . ID=CGI_10020632; scaffold82 WUBlastX LINE_CR1-L2 213923 215800 370 - . . scaffold82 GLEAN mRNA 207536 221128 0.649891 + . ID=CGI_10025248; scaffold305 WUBlastX LINE_L1 463758 464045 20 - . . scaffold305 GLEAN mRNA 449845 466663 0.999234 + . ID=CGI_10019141; scaffold1774 WUBlastX DNA_Kolobok 48375 49025 120 + . . scaffold1774 GLEAN mRNA 36391 50061 0.563353 + . ID=CGI_10006376; scaffold321 WUBlastX LTR_Gypsy 478257 478757 191 + . . scaffold321 GLEAN mRNA 474717 485753 0.439448 - . ID=CGI_10020812; scaffold471 WUBlastX DNA_MuDR 1229420 1229671 83 - . . scaffold471 GLEAN mRNA 1226022 1238861 0.423333 - . ID=CGI_10027038; scaffold481 WUBlastX LTR_Copia 1217687 1218016 25 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold1066 WUBlastX LTR_Copia 169258 169797 71 + . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold784 WUBlastX LTR_Copia 306410 306478 30 - . . scaffold784 GLEAN mRNA 298825 308897 0.999951 - . ID=CGI_10024422; scaffold1698 WUBlastX DNA_Harbinger 389458 389610 62 + . . scaffold1698 GLEAN mRNA 386388 395042 0.549917 + . ID=CGI_10019385; scaffold1061 WUBlastX DNA_Kolobok-Hyd 72148 72186 24 - . . scaffold1061 GLEAN mRNA 71667 73216 0.999996 - . ID=CGI_10017241; C29788 WUBlastX LINE_L1 5843 6376 64 + . . C29788 GLEAN mRNA 5498 6724 0.72793 + . ID=CGI_10000560; scaffold140 WUBlastX LINE_L2 366854 366943 26 - . . scaffold140 GLEAN mRNA 344940 369951 0.671174 - . ID=CGI_10020136; scaffold1831 WUBlastX LINE_I-Nimb 33543 34238 52 + . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_I-Nimb 33543 34238 52 + . . scaffold1831 GLEAN mRNA 30321 42527 0.595655 - . ID=CGI_10002913; scaffold1449 WUBlastX DNA_TcMar-Tc1 51718 52119 23 - . . scaffold1449 GLEAN mRNA 47527 52497 0.806919 - . ID=CGI_10010690; scaffold1849 WUBlastX LINE_CR1-L2 349596 349658 49 - . . scaffold1849 GLEAN mRNA 345198 370191 0.662499 + . ID=CGI_10015920; scaffold113 WUBlastX DNA_hAT-Ac 590418 590606 73 - . . scaffold113 GLEAN mRNA 582017 590807 0.980826 - . ID=CGI_10021294; scaffold1272 WUBlastX LTR_Ngaro 166458 166682 50 - . . scaffold1272 GLEAN mRNA 155957 203314 0.324986 - . ID=CGI_10008310; scaffold39134 WUBlastX LTR_Gypsy 45350 45676 91 + . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold1588 WUBlastX LINE_I 75595 75903 31 + . . scaffold1588 GLEAN mRNA 56027 117187 0.840099 - . ID=CGI_10014772; scaffold43920 WUBlastX DNA_MuDR 307722 308189 44 + . . scaffold43920 GLEAN mRNA 301272 308189 0.985601 + . ID=CGI_10013998; C36680 WUBlastX LINE_CR1 9303 9650 80 - . . C36680 GLEAN mRNA 2216 22548 0.727902 - . ID=CGI_10002070; scaffold1020 WUBlastX DNA_IS4EU 202396 202974 91 - . . scaffold1020 GLEAN mRNA 186471 206717 0.999666 - . ID=CGI_10012855; scaffold317 WUBlastX DNA_Kolobok-Hyd 108550 108571 60 - . . scaffold317 GLEAN mRNA 108550 108783 0.998263 - . ID=CGI_10019342; scaffold1186 WUBlastX LINE_Penelope 240991 241101 42 + . . scaffold1186 GLEAN mRNA 224167 244631 0.351511 - . ID=CGI_10010599; scaffold184 WUBlastX DNA_TcMar-Tc1 193881 194294 26 + . . scaffold184 GLEAN mRNA 186538 196154 0.912721 - . ID=CGI_10014797; scaffold37148 WUBlastX LINE_L1-Tx1 12533 12868 62 + . . scaffold37148 GLEAN mRNA 9385 30637 0.645987 - . ID=CGI_10002291; scaffold36 WUBlastX LTR_ERV1 2519 2527 59 + . . scaffold36 GLEAN mRNA 2519 8438 0.614104 + . ID=CGI_10001028; scaffold42770 WUBlastX LINE_L1-Tx1 16692 16916 43 - . . scaffold42770 GLEAN mRNA 14131 34729 0.562742 - . ID=CGI_10007687; scaffold365 WUBlastX DNA_Kolobok 285171 285419 104 + . . scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; scaffold146 WUBlastX LINE_Penelope 643774 644052 60 - . . scaffold146 GLEAN mRNA 638309 652967 0.499837 - . ID=CGI_10024916; scaffold619 WUBlastX DNA_MuDR 875957 876022 20 - . . scaffold619 GLEAN mRNA 870805 880758 0.920529 - . ID=CGI_10025790; scaffold61 WUBlastX DNA_Sola 189931 190515 31 + . . scaffold61 GLEAN mRNA 189931 192038 1 + . ID=CGI_10016347; scaffold43076 WUBlastX DNA_IS4EU 66578 66685 33 + . . scaffold43076 GLEAN mRNA 66506 68912 0.997439 + . ID=CGI_10008761; scaffold728 WUBlastX DNA_hAT-Blackja 168400 168705 88 - . . scaffold728 GLEAN mRNA 164455 204088 0.997729 + . ID=CGI_10018231; scaffold507 WUBlastX LINE_L1-Tx1 37951 38259 38 + . . scaffold507 GLEAN mRNA 28082 39253 0.563608 + . ID=CGI_10019083; scaffold99 WUBlastX DNA_Kolobok-IS4 107906 108352 83 + . . scaffold99 GLEAN mRNA 106780 117604 0.544851 - . ID=CGI_10021191; scaffold925 WUBlastX LINE_L2 198795 199334 96 + . . scaffold925 GLEAN mRNA 185655 201680 0.878781 - . ID=CGI_10017418; scaffold42866 WUBlastX DNA_IS4EU 71251 72201 102 - . . scaffold42866 GLEAN mRNA 43150 93731 0.871395 + . ID=CGI_10007991; scaffold962 WUBlastX LINE_L1 900263 900526 63 - . . scaffold962 GLEAN mRNA 895122 910659 0.455688 + . ID=CGI_10027670; scaffold211 WUBlastX LINE_RTE-X 986558 986866 82 + . . scaffold211 GLEAN mRNA 978840 989319 0.74015 + . ID=CGI_10026972; scaffold1024 WUBlastX DNA_Zator 97818 98165 135 + . . scaffold1024 GLEAN mRNA 87362 100892 0.557329 - . ID=CGI_10028520; scaffold635 WUBlastX LTR_Gypsy 116683 116775 22 - . . scaffold635 GLEAN mRNA 115264 124278 0.98729 - . ID=CGI_10008922; scaffold1018 WUBlastX LINE_RTE-X 262409 262504 62 - . . scaffold1018 GLEAN mRNA 242940 268764 0.606365 + . ID=CGI_10019762; scaffold203 WUBlastX LINE_RTE-X 629373 629537 71 - . . scaffold203 GLEAN mRNA 599632 671214 0.810319 + . ID=CGI_10021081; scaffold1532 WUBlastX LINE_RTE-X 974994 975323 135 - . . scaffold1532 GLEAN mRNA 970227 975953 0.953998 - . ID=CGI_10028277; scaffold288 WUBlastX LINE_L1-Tx1 209594 209788 34 - . . scaffold288 GLEAN mRNA 165543 215886 0.392804 - . ID=CGI_10020660; scaffold36450 WUBlastX RC_Helitron 4151 4417 37 + . . scaffold36450 GLEAN mRNA 3992 12302 0.990019 + . ID=CGI_10001979; scaffold301 WUBlastX LINE_RTE-X 395780 396844 632 - . . scaffold301 GLEAN mRNA 385076 401217 0.811406 + . ID=CGI_10026720; scaffold1004 WUBlastX DNA_IS4EU 10803 11345 153 + . . scaffold1004 GLEAN mRNA 10032 23372 0.57306 + . ID=CGI_10020759; scaffold1004 WUBlastX DNA_IS4EU 10803 11345 153 + . . scaffold1004 GLEAN mRNA 10170 36067 1 - . ID=CGI_10020760; scaffold1264 WUBlastX LINE_L1-Tx1 37129 37626 42 + . . scaffold1264 GLEAN mRNA 25666 41185 0.612594 + . ID=CGI_10007170; scaffold156 WUBlastX LINE_L2 274507 274830 68 + . . scaffold156 GLEAN mRNA 272710 277708 0.558302 - . ID=CGI_10026489; scaffold156 WUBlastX LINE_L2 275181 275453 37 + . . scaffold156 GLEAN mRNA 272710 277708 0.558302 - . ID=CGI_10026489; scaffold271 WUBlastX LINE_L1-Tx1 470602 470874 65 - . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold271 WUBlastX LINE_L1-Tx1 471253 471414 54 - . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold1696 WUBlastX LTR_Pao 2760 3203 270 + . . scaffold1696 GLEAN mRNA 261 23562 0.414457 - . ID=CGI_10003674; scaffold1554 WUBlastX LTR_Gypsy 4700 6520 1113 - . . scaffold1554 GLEAN mRNA 977 22779 0.529783 + . ID=CGI_10017354; scaffold502 WUBlastX LINE_L1-Tx1 74373 74756 250 + . . scaffold502 GLEAN mRNA 66995 88059 0.642831 + . ID=CGI_10024313; scaffold502 WUBlastX LINE_L1-Tx1 74762 75472 340 + . . scaffold502 GLEAN mRNA 66995 88059 0.642831 + . ID=CGI_10024313; scaffold502 WUBlastX LINE_L1-Tx1 75777 76385 320 + . . scaffold502 GLEAN mRNA 66995 88059 0.642831 + . ID=CGI_10024313; scaffold502 WUBlastX LINE_L1-Tx1 77315 77977 282 + . . scaffold502 GLEAN mRNA 66995 88059 0.642831 + . ID=CGI_10024313; scaffold896 WUBlastX LINE_L1 247982 248740 41 + . . scaffold896 GLEAN mRNA 238310 251019 0.969948 - . ID=CGI_10022839; scaffold801 WUBlastX DNA_TcMar-Tc1 633081 633446 133 + . . scaffold801 GLEAN mRNA 629688 677591 0.460193 - . ID=CGI_10024093; scaffold1860 WUBlastX LINE_L1-Tx1 97229 97372 49 - . . scaffold1860 GLEAN mRNA 86890 98787 0.482927 + . ID=CGI_10013940; scaffold1860 WUBlastX LINE_L1-Tx1 97420 97605 54 - . . scaffold1860 GLEAN mRNA 86890 98787 0.482927 + . ID=CGI_10013940; scaffold1785 WUBlastX LINE_L2 22271 22798 152 + . . scaffold1785 GLEAN mRNA 6322 29997 0.294917 - . ID=CGI_10024349; scaffold481 WUBlastX LINE_L2 1208958 1209881 88 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold676 WUBlastX LINE_RTE-X 576220 576435 38 - . . scaffold676 GLEAN mRNA 560023 599101 0.378138 + . ID=CGI_10021432; scaffold621 WUBlastX LINE_RTE-X 72300 72998 115 - . . scaffold621 GLEAN mRNA 65448 89925 0.549323 - . ID=CGI_10017670; scaffold143 WUBlastX LINE_L1-Tx1 186818 187315 90 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold833 WUBlastX LINE_L1-Tx1 465889 467277 592 - . . scaffold833 GLEAN mRNA 463710 469468 0.999591 - . ID=CGI_10016746; scaffold833 WUBlastX LINE_L1-Tx1 467279 467689 412 - . . scaffold833 GLEAN mRNA 463710 469468 0.999591 - . ID=CGI_10016746; scaffold833 WUBlastX LINE_L1-Tx1 467906 468598 350 - . . scaffold833 GLEAN mRNA 463710 469468 0.999591 - . ID=CGI_10016746; scaffold156 WUBlastX LTR_Gypsy-Cigr 1100653 1103382 1878 - . . scaffold156 GLEAN mRNA 1094153 1105194 0.982183 - . ID=CGI_10026543; scaffold413 WUBlastX LINE_CR1-L2 736088 737068 109 + . . scaffold413 GLEAN mRNA 729457 747893 0.897312 - . ID=CGI_10022826; scaffold925 WUBlastX LTR_DIRS 441891 442088 125 + . . scaffold925 GLEAN mRNA 430454 444048 0.986598 + . ID=CGI_10017428; scaffold714 WUBlastX DNA_TcMar-Tc1 88385 88765 78 - . . scaffold714 GLEAN mRNA 72326 94511 0.727136 + . ID=CGI_10016640; scaffold794 WUBlastX LTR_Gypsy 280988 281248 80 + . . scaffold794 GLEAN mRNA 271227 282643 0.491343 - . ID=CGI_10017153; scaffold43702 WUBlastX LINE_RTE-X 80217 80966 168 - . . scaffold43702 GLEAN mRNA 66519 92177 0.245591 - . ID=CGI_10011903; scaffold237 WUBlastX LINE_RTE-X 319359 320393 182 - . . scaffold237 GLEAN mRNA 315225 321061 0.999786 + . ID=CGI_10021581; scaffold40836 WUBlastX LINE_CR1-L2 82564 82719 68 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold502 WUBlastX LTR_Ngaro 797610 798503 202 - . . scaffold502 GLEAN mRNA 778874 801211 0.91725 + . ID=CGI_10024346; scaffold1299 WUBlastX LINE_RTE-BovB 139995 140450 296 - . . scaffold1299 GLEAN mRNA 132868 184987 0.923911 + . ID=CGI_10007586; scaffold223 WUBlastX DNA_Harbinger 283616 284278 260 + . . scaffold223 GLEAN mRNA 275585 285591 0.814847 - . ID=CGI_10012923; scaffold419 WUBlastX LINE_RTE-BovB 251911 252153 141 + . . scaffold419 GLEAN mRNA 243081 266501 0.999183 - . ID=CGI_10028337; scaffold406 WUBlastX LTR_Gypsy 64021 64149 29 - . . scaffold406 GLEAN mRNA 63105 78647 0.760341 - . ID=CGI_10023839; scaffold39088 WUBlastX DNA_TcMar-Tc1 40219 40566 96 + . . scaffold39088 GLEAN mRNA 31554 48725 0.999086 - . ID=CGI_10003173; scaffold79 WUBlastX DNA_TcMar-Tc1 873314 873559 25 - . . scaffold79 GLEAN mRNA 869143 880340 0.999287 - . ID=CGI_10024652; scaffold88 WUBlastX DNA_TcMar-Tc1 19238 19369 37 - . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold723 WUBlastX LTR_Gypsy 208111 209526 979 - . . scaffold723 GLEAN mRNA 194118 214562 0.999791 - . ID=CGI_10015263; scaffold723 WUBlastX LTR_Gypsy 209616 209957 292 - . . scaffold723 GLEAN mRNA 194118 214562 0.999791 - . ID=CGI_10015263; scaffold128 WUBlastX LINE_L2 91094 91849 313 + . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; scaffold453 WUBlastX LTR_Gypsy 305022 305639 87 + . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold453 WUBlastX LTR_Gypsy 305886 306542 171 + . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold535 WUBlastX LTR_Gypsy 557243 558244 303 + . . scaffold535 GLEAN mRNA 556071 562996 0.477113 + . ID=CGI_10020299; scaffold37532 WUBlastX LTR_Gypsy 33073 33516 92 - . . scaffold37532 GLEAN mRNA 24867 43092 0.82218 + . ID=CGI_10002401; scaffold292 WUBlastX DNA_TcMar-Marin 37940 38083 63 + . . scaffold292 GLEAN mRNA 29262 46507 0.999144 + . ID=CGI_10003527; scaffold1464 WUBlastX LTR_Gypsy 2423 2977 235 + . . scaffold1464 GLEAN mRNA 1479 25035 0.549445 + . ID=CGI_10003234; scaffold37430 WUBlastX LTR_Pao 38048 38206 79 - . . scaffold37430 GLEAN mRNA 25525 41907 0.539363 + . ID=CGI_10002358; scaffold621 WUBlastX LTR_DIRS 151191 152090 389 - . . scaffold621 GLEAN mRNA 127381 238205 0.796035 + . ID=CGI_10017672; scaffold1583 WUBlastX DNA_Maverick 757569 758177 406 - . . scaffold1583 GLEAN mRNA 756798 766988 0.512265 - . ID=CGI_10025840; scaffold1350 WUBlastX LINE_RTE-X 398590 398688 26 - . . scaffold1350 GLEAN mRNA 393414 411683 0.728523 + . ID=CGI_10017317; scaffold507 WUBlastX LINE_L1-Tx1 178046 178381 171 + . . scaffold507 GLEAN mRNA 176329 186367 0.999675 - . ID=CGI_10019089; scaffold507 WUBlastX LINE_L1-Tx1 178392 178607 88 + . . scaffold507 GLEAN mRNA 176329 186367 0.999675 - . ID=CGI_10019089; scaffold507 WUBlastX LINE_L1-Tx1 178604 179119 149 + . . scaffold507 GLEAN mRNA 176329 186367 0.999675 - . ID=CGI_10019089; scaffold1103 WUBlastX LINE_L2 11747 11803 21 + . . scaffold1103 GLEAN mRNA 2927 17962 0.836195 - . ID=CGI_10004868; scaffold257 WUBlastX LTR_DIRS 1605445 1605858 179 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold1357 WUBlastX DNA_Maverick 79560 80312 384 - . . scaffold1357 GLEAN mRNA 78358 86116 0.978973 - . ID=CGI_10004038; scaffold1222 WUBlastX LINE_CR1-L2 76656 77159 181 + . . scaffold1222 GLEAN mRNA 68719 82791 0.648135 - . ID=CGI_10016236; scaffold39640 WUBlastX DNA_IS4EU 51245 51808 348 - . . scaffold39640 GLEAN mRNA 51087 54120 0.557203 - . ID=CGI_10003501; scaffold1831 WUBlastX LINE_RTE-X 25595 25741 70 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold226 WUBlastX LTR_Ngaro 468325 468417 43 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold40614 WUBlastX LINE_L2 62290 62694 141 - . . scaffold40614 GLEAN mRNA 56089 69167 0.972217 + . ID=CGI_10004259; scaffold583 WUBlastX LINE_CR1 746077 747150 319 - . . scaffold583 GLEAN mRNA 741499 750992 0.999674 - . ID=CGI_10023643; scaffold583 WUBlastX LINE_CR1 746077 747150 319 - . . scaffold583 GLEAN mRNA 742000 755299 0.5 + . ID=CGI_10023644; scaffold1665 WUBlastX LTR_Gypsy 222388 222915 183 + . . scaffold1665 GLEAN mRNA 220836 229215 0.994598 - . ID=CGI_10015206; scaffold1009 WUBlastX DNA_IS4EU 431572 431709 45 + . . scaffold1009 GLEAN mRNA 430368 431934 1 + . ID=CGI_10028733; scaffold99 WUBlastX LINE_L1-Tx1 358707 360314 163 + . . scaffold99 GLEAN mRNA 358334 365567 0.999675 + . ID=CGI_10021202; scaffold363 WUBlastX DNA_Harbinger 97875 98753 595 + . . scaffold363 GLEAN mRNA 95165 111779 0.789891 - . ID=CGI_10019289; scaffold1794 WUBlastX DNA_Academ 551706 552011 226 - . . scaffold1794 GLEAN mRNA 551697 552194 0.854769 - . ID=CGI_10019596; scaffold1188 WUBlastX LTR_Gypsy 173475 174059 298 - . . scaffold1188 GLEAN mRNA 159311 176924 0.555609 - . ID=CGI_10025460; scaffold53 WUBlastX LINE_RTE-X 112083 114446 585 + . . scaffold53 GLEAN mRNA 69197 125241 0.981118 + . ID=CGI_10026649; scaffold248 WUBlastX LTR_Pao 483654 484151 25 + . . scaffold248 GLEAN mRNA 483285 484196 0.965913 + . ID=CGI_10017238; C30058 WUBlastX LINE_L2 1567 1830 58 + . . C30058 GLEAN mRNA 650 4812 0.700712 - . ID=CGI_10000592; scaffold621 WUBlastX LTR_DIRS 360524 360820 66 - . . scaffold621 GLEAN mRNA 360060 382748 0.996965 - . ID=CGI_10017688; scaffold1533 WUBlastX DNA_Harbinger 94238 94450 76 + . . scaffold1533 GLEAN mRNA 91991 98571 1 + . ID=CGI_10012868; scaffold1101 WUBlastX LINE_L1 151725 151877 64 - . . scaffold1101 GLEAN mRNA 141921 154245 0.479315 + . ID=CGI_10023014; scaffold1245 WUBlastX DNA_TcMar-Marin 104433 104660 53 - . . scaffold1245 GLEAN mRNA 102403 119670 0.989696 - . ID=CGI_10009226; scaffold336 WUBlastX LINE_RTE-X 216135 216251 49 - . . scaffold336 GLEAN mRNA 208327 217851 1 - . ID=CGI_10012569; scaffold1599 WUBlastX LINE_RTE-X 543062 543208 34 + . . scaffold1599 GLEAN mRNA 541949 554448 0.648153 + . ID=CGI_10027151; scaffold43920 WUBlastX LINE_RTE-X 357959 358171 70 - . . scaffold43920 GLEAN mRNA 342007 379534 0.562069 - . ID=CGI_10014001; scaffold43964 WUBlastX LINE_RTE-X 134806 134952 74 - . . scaffold43964 GLEAN mRNA 134421 152513 0.996559 - . ID=CGI_10014643; scaffold585 WUBlastX LINE_RTE-RTE 106920 107138 91 + . . scaffold585 GLEAN mRNA 91313 107443 0.999351 - . ID=CGI_10005541; scaffold42302 WUBlastX DNA_PiggyBac 42078 42248 36 - . . scaffold42302 GLEAN mRNA 42006 46479 0.986322 - . ID=CGI_10006568; scaffold34732 WUBlastX LINE_L1-Tx1 16367 16708 31 + . . scaffold34732 GLEAN mRNA 11726 18752 1 - . ID=CGI_10001335; scaffold1232 WUBlastX LTR_Ngaro 62444 62680 53 + . . scaffold1232 GLEAN mRNA 53895 66601 0.999898 - . ID=CGI_10014987; scaffold1687 WUBlastX DNA_P 175933 176172 38 + . . scaffold1687 GLEAN mRNA 175921 180780 0.898283 + . ID=CGI_10008394; scaffold40454 WUBlastX LINE_RTE-BovB 83347 83617 33 + . . scaffold40454 GLEAN mRNA 83347 90444 1 - . ID=CGI_10004122; scaffold1098 WUBlastX DNA_Sola 127185 127313 26 - . . scaffold1098 GLEAN mRNA 127164 127730 0.999983 - . ID=CGI_10010797; scaffold1098 WUBlastX DNA_Sola 127368 127688 53 - . . scaffold1098 GLEAN mRNA 127164 127730 0.999983 - . ID=CGI_10010797; scaffold39258 WUBlastX DNA_hAT-Tip100 23489 23620 35 - . . scaffold39258 GLEAN mRNA 21383 23695 0.999661 - . ID=CGI_10003263; scaffold1143 WUBlastX DNA_Kolobok-IS4 123305 123835 87 - . . scaffold1143 GLEAN mRNA 121955 124624 0.796524 - . ID=CGI_10009141; scaffold1665 WUBlastX LINE_RTE-X 134131 134367 69 + . . scaffold1665 GLEAN mRNA 129924 142467 0.651132 - . ID=CGI_10015200; scaffold1186 WUBlastX LINE_RTE-X 71791 71904 45 + . . scaffold1186 GLEAN mRNA 62909 95132 0.584728 + . ID=CGI_10010593; scaffold102 WUBlastX LINE_RTE-BovB 984589 985008 72 + . . scaffold102 GLEAN mRNA 961541 993549 0.838657 - . ID=CGI_10028460; C35952 WUBlastX DNA_Sola 448 651 69 + . . C35952 GLEAN mRNA 195 8083 0.544487 + . ID=CGI_10001669; scaffold412 WUBlastX LINE_Jockey 380809 380856 27 + . . scaffold412 GLEAN mRNA 380663 381094 0.999998 + . ID=CGI_10018577; scaffold117 WUBlastX LTR_Gypsy 381802 382515 48 + . . scaffold117 GLEAN mRNA 381424 383832 0.991601 + . ID=CGI_10016969; scaffold43954 WUBlastX DNA_MuDR 334847 335032 82 + . . scaffold43954 GLEAN mRNA 334847 335729 0.999507 + . ID=CGI_10014586; C28258 WUBlastX LINE_L1-Tx1 3417 3584 49 + . . C28258 GLEAN mRNA 3417 4139 0.593325 + . ID=CGI_10000414; scaffold1247 WUBlastX DNA_TcMar-Tc1 182961 183137 58 + . . scaffold1247 GLEAN mRNA 173109 184348 0.886383 - . ID=CGI_10008950; C29388 WUBlastX LTR_Gypsy 3690 4307 99 + . . C29388 GLEAN mRNA 1255 5572 0.998536 + . ID=CGI_10000526; scaffold117 WUBlastX LTR_Gypsy 382663 383148 80 + . . scaffold117 GLEAN mRNA 381424 383832 0.991601 + . ID=CGI_10016969; scaffold42364 WUBlastX LINE_L2 74166 74375 31 - . . scaffold42364 GLEAN mRNA 72172 88504 0.999923 + . ID=CGI_10006723; scaffold336 WUBlastX LINE_L2 216227 216301 28 - . . scaffold336 GLEAN mRNA 208327 217851 1 - . ID=CGI_10012569; scaffold44008 WUBlastX DNA_hAT-Tip100 354420 354809 128 + . . scaffold44008 GLEAN mRNA 353787 363820 0.499838 + . ID=CGI_10015300; scaffold337 WUBlastX LINE_RTE-BovB 570716 571153 42 + . . scaffold337 GLEAN mRNA 562237 577539 1 - . ID=CGI_10028070; scaffold1748 WUBlastX LINE_L2 22722 22844 103 - . . scaffold1748 GLEAN mRNA 17962 26532 0.999389 + . ID=CGI_10002255; scaffold164 WUBlastX LTR_Gypsy 53501 53899 108 - . . scaffold164 GLEAN mRNA 40628 54980 0.99473 - . ID=CGI_10021845; scaffold1036 WUBlastX DNA_Kolobok-IS4 71116 71235 25 + . . scaffold1036 GLEAN mRNA 62334 73775 0.755696 - . ID=CGI_10019943; scaffold1036 WUBlastX DNA_Kolobok-IS4 71226 71438 76 + . . scaffold1036 GLEAN mRNA 62334 73775 0.755696 - . ID=CGI_10019943; scaffold576 WUBlastX LTR_Gypsy 444434 444490 21 - . . scaffold576 GLEAN mRNA 442615 444769 0.841376 - . ID=CGI_10018782; scaffold983 WUBlastX DNA_NOF? 247678 247986 102 + . . scaffold983 GLEAN mRNA 244830 248843 1 - . ID=CGI_10014030; scaffold1589 WUBlastX LINE_L1 381478 381546 22 + . . scaffold1589 GLEAN mRNA 370243 390217 0.643157 + . ID=CGI_10024115; scaffold828 WUBlastX LINE_L2 53732 53923 76 + . . scaffold828 GLEAN mRNA 15085 78014 0.596994 - . ID=CGI_10007364; scaffold86 WUBlastX DNA_Kolobok 149857 150057 69 + . . scaffold86 GLEAN mRNA 141744 153852 0.999675 - . ID=CGI_10028139; scaffold286 WUBlastX LINE_L1-Tx1 71809 72180 72 - . . scaffold286 GLEAN mRNA 70101 79780 0.990881 + . ID=CGI_10015958; scaffold542 WUBlastX LINE_L1-Tx1 231791 232381 60 + . . scaffold542 GLEAN mRNA 230390 250299 0.926479 - . ID=CGI_10014766; scaffold1670 WUBlastX LINE_CR1 399215 399331 30 + . . scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; scaffold315 WUBlastX LINE_RTE-X 317905 318000 21 + . . scaffold315 GLEAN mRNA 296779 330061 0.935948 + . ID=CGI_10020417; scaffold1777 WUBlastX LTR_Ngaro 8333 8647 63 + . . scaffold1777 GLEAN mRNA 5363 10416 0.999547 + . ID=CGI_10003152; scaffold42 WUBlastX DNA_Kolobok 367455 367664 87 + . . scaffold42 GLEAN mRNA 366625 368271 0.99869 + . ID=CGI_10018915; scaffold660 WUBlastX LINE_RTE-X 107646 107798 66 + . . scaffold660 GLEAN mRNA 98549 108257 0.999675 - . ID=CGI_10013750; scaffold828 WUBlastX LINE_L2 74830 75552 97 + . . scaffold828 GLEAN mRNA 15085 78014 0.596994 - . ID=CGI_10007364; scaffold1771 WUBlastX LTR_Gypsy-Cigr 94387 94953 151 - . . scaffold1771 GLEAN mRNA 88638 95441 0.521534 - . ID=CGI_10004387; scaffold1773 WUBlastX LINE_Penelope 115460 115624 69 + . . scaffold1773 GLEAN mRNA 113483 121773 0.995285 + . ID=CGI_10011228; scaffold1773 WUBlastX LINE_Penelope 115638 116210 133 + . . scaffold1773 GLEAN mRNA 113483 121773 0.995285 + . ID=CGI_10011228; scaffold219 WUBlastX LINE_L1-Tx1 132001 132138 37 + . . scaffold219 GLEAN mRNA 124764 139591 0.613723 - . ID=CGI_10016614; scaffold496 WUBlastX LINE_L1-Tx1 725276 725512 69 + . . scaffold496 GLEAN mRNA 713503 727921 0.615833 - . ID=CGI_10022473; scaffold839 WUBlastX LINE_L1 86311 86733 56 - . . scaffold839 GLEAN mRNA 78755 87937 0.999546 - . ID=CGI_10004337; scaffold407 WUBlastX LINE_L2 14495 14896 80 + . . scaffold407 GLEAN mRNA 13072 17204 0.999998 + . ID=CGI_10002626; scaffold37010 WUBlastX LTR_DIRS 31240 31632 91 - . . scaffold37010 GLEAN mRNA 9826 38663 0.529667 + . ID=CGI_10002196; scaffold37010 WUBlastX LTR_DIRS 31735 31896 22 - . . scaffold37010 GLEAN mRNA 9826 38663 0.529667 + . ID=CGI_10002196; scaffold39730 WUBlastX DNA_TcMar-Marin 17258 17419 48 + . . scaffold39730 GLEAN mRNA 3685 28743 0.191255 - . ID=CGI_10003588; scaffold39730 WUBlastX DNA_TcMar-Marin 17258 17419 48 + . . scaffold39730 GLEAN mRNA 16282 30561 0.999947 + . ID=CGI_10003589; scaffold544 WUBlastX LINE_L2 617614 618411 110 + . . scaffold544 GLEAN mRNA 615493 630959 0.537216 - . ID=CGI_10022576; scaffold1221 WUBlastX LINE_L1-Tx1 523662 524054 93 + . . scaffold1221 GLEAN mRNA 522455 543272 0.967384 + . ID=CGI_10019749; scaffold165 WUBlastX LTR_Gypsy 111145 112086 433 + . . scaffold165 GLEAN mRNA 100697 128503 0.998921 + . ID=CGI_10015315; scaffold1459 WUBlastX LINE_L1 10652 10987 60 + . . scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; scaffold43648 WUBlastX DNA_Kolobok 232227 232643 152 + . . scaffold43648 GLEAN mRNA 231599 237776 0.973881 - . ID=CGI_10011593; scaffold1335 WUBlastX LINE_Penelope 14866 15423 149 - . . scaffold1335 GLEAN mRNA 497 21134 0.65089 + . ID=CGI_10001395; scaffold1462 WUBlastX DNA_Zator 134344 136353 1133 + . . scaffold1462 GLEAN mRNA 126068 169270 0.382353 + . ID=CGI_10014372; scaffold1462 WUBlastX DNA_Zator 137249 137395 107 + . . scaffold1462 GLEAN mRNA 126068 169270 0.382353 + . ID=CGI_10014372; scaffold1462 WUBlastX DNA_Zator 137492 138046 101 + . . scaffold1462 GLEAN mRNA 126068 169270 0.382353 + . ID=CGI_10014372; scaffold1054 WUBlastX LINE_L2 312831 313205 77 + . . scaffold1054 GLEAN mRNA 312606 322566 0.968602 + . ID=CGI_10012967; scaffold412 WUBlastX LINE_L1-Tx1 144786 145418 191 + . . scaffold412 GLEAN mRNA 141227 160730 0.499998 - . ID=CGI_10018560; scaffold412 WUBlastX LINE_L1-Tx1 147285 147956 74 + . . scaffold412 GLEAN mRNA 141227 160730 0.499998 - . ID=CGI_10018560; scaffold412 WUBlastX LINE_L1-Tx1 148042 148443 29 + . . scaffold412 GLEAN mRNA 141227 160730 0.499998 - . ID=CGI_10018560; scaffold43446 WUBlastX LINE_CR1 163235 163363 41 + . . scaffold43446 GLEAN mRNA 154155 168433 0.907649 - . ID=CGI_10010403; scaffold410 WUBlastX LTR_DIRS 300343 302370 1294 - . . scaffold410 GLEAN mRNA 298599 310174 0.996652 + . ID=CGI_10020635; scaffold544 WUBlastX LINE_L2 154794 155111 160 + . . scaffold544 GLEAN mRNA 151326 160758 0.999999 - . ID=CGI_10022551; scaffold35406 WUBlastX RC_Helitron 14003 14485 144 + . . scaffold35406 GLEAN mRNA 1505 18996 0.688101 - . ID=CGI_10001499; scaffold43302 WUBlastX DNA_PiggyBac 57665 58399 144 + . . scaffold43302 GLEAN mRNA 44692 96293 0.992844 + . ID=CGI_10009758; scaffold43686 WUBlastX LINE_CR1 15536 16489 742 - . . scaffold43686 GLEAN mRNA 15165 50110 0.498897 + . ID=CGI_10011753; scaffold43686 WUBlastX LINE_CR1 17581 17829 121 - . . scaffold43686 GLEAN mRNA 15165 50110 0.498897 + . ID=CGI_10011753; scaffold41816 WUBlastX LINE_L2 88683 89183 149 - . . scaffold41816 GLEAN mRNA 84334 89370 0.999542 + . ID=CGI_10005649; scaffold1518 WUBlastX LTR_Ngaro 270928 271764 162 - . . scaffold1518 GLEAN mRNA 258241 287104 0.241996 + . ID=CGI_10017803; scaffold40928 WUBlastX LINE_CR1 40261 40704 152 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold140 WUBlastX LINE_CR1-L2 345064 345348 74 - . . scaffold140 GLEAN mRNA 327930 353126 0.379108 + . ID=CGI_10020135; scaffold140 WUBlastX LINE_CR1-L2 345064 345348 74 - . . scaffold140 GLEAN mRNA 344940 369951 0.671174 - . ID=CGI_10020136; scaffold41998 WUBlastX LINE_RTE-BovB 42038 44089 1798 - . . scaffold41998 GLEAN mRNA 32389 44944 0.999949 - . ID=CGI_10005911; scaffold780 WUBlastX LINE_L2 150164 150481 151 - . . scaffold780 GLEAN mRNA 138989 166483 0.986281 + . ID=CGI_10024719; scaffold504 WUBlastX LINE_L2 177047 177403 103 - . . scaffold504 GLEAN mRNA 176392 179041 1 - . ID=CGI_10016023; scaffold504 WUBlastX LINE_L2 177381 177569 36 - . . scaffold504 GLEAN mRNA 176392 179041 1 - . ID=CGI_10016023; scaffold504 WUBlastX LINE_L2 177586 177873 82 - . . scaffold504 GLEAN mRNA 176392 179041 1 - . ID=CGI_10016023; scaffold522 WUBlastX LTR_Gypsy 555972 556106 93 - . . scaffold522 GLEAN mRNA 555460 561290 0.999999 + . ID=CGI_10020338; C31322 WUBlastX LINE_RTE-X 7288 8130 239 - . . C31322 GLEAN mRNA 2728 8628 1 - . ID=CGI_10000731; scaffold79 WUBlastX DNA_Harbinger 257413 257628 20 + . . scaffold79 GLEAN mRNA 257196 271359 0.644901 + . ID=CGI_10024620; scaffold79 WUBlastX DNA_Harbinger 257691 258185 179 + . . scaffold79 GLEAN mRNA 257196 271359 0.644901 + . ID=CGI_10024620; scaffold1897 WUBlastX LINE_RTE-X 201296 201643 69 + . . scaffold1897 GLEAN mRNA 190471 249775 0.317357 - . ID=CGI_10020917; scaffold950 WUBlastX LINE_L2 390058 391149 141 - . . scaffold950 GLEAN mRNA 384027 397632 0.588964 + . ID=CGI_10022929; scaffold393 WUBlastX LINE_RTE-X 1042835 1042951 66 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold308 WUBlastX DNA_hAT-Tip100 103710 104438 141 - . . scaffold308 GLEAN mRNA 89849 109933 0.990769 - . ID=CGI_10011007; scaffold563 WUBlastX LINE_R2-Hero 558410 558874 337 - . . scaffold563 GLEAN mRNA 542480 589820 0.135238 + . ID=CGI_10019846; scaffold292 WUBlastX DNA_TcMar-Marin 37462 37749 191 + . . scaffold292 GLEAN mRNA 29262 46507 0.999144 + . ID=CGI_10003527; scaffold38678 WUBlastX DNA_Kolobok-IS4 278 1021 413 - . . scaffold38678 GLEAN mRNA 233 1096 1 - . ID=CGI_10002904; scaffold1670 WUBlastX LINE_L1-Tx1 464680 465027 150 - . . scaffold1670 GLEAN mRNA 448842 475285 0.99939 + . ID=CGI_10017627; scaffold1749 WUBlastX DNA_Maverick 109495 109620 68 + . . scaffold1749 GLEAN mRNA 104860 117950 0.57225 + . ID=CGI_10008256; scaffold976 WUBlastX LINE_L1-Tx1 116726 117409 426 + . . scaffold976 GLEAN mRNA 100649 120076 0.999949 + . ID=CGI_10014006; scaffold38966 WUBlastX DNA_TcMar-Tc1 52817 53455 305 + . . scaffold38966 GLEAN mRNA 40711 56502 0.505852 + . ID=CGI_10003113; scaffold593 WUBlastX LINE_RTE-X 274506 275384 252 - . . scaffold593 GLEAN mRNA 274494 275384 0.999999 - . ID=CGI_10022520; scaffold1445 WUBlastX LINE_L1-Tx1 216492 218138 369 - . . scaffold1445 GLEAN mRNA 215438 231778 0.644744 - . ID=CGI_10010374; scaffold1213 WUBlastX LINE_L1-Tx1 417654 418061 101 - . . scaffold1213 GLEAN mRNA 408300 423198 0.400191 - . ID=CGI_10027450; scaffold534 WUBlastX LINE_L1-Tx1 73828 74352 168 + . . scaffold534 GLEAN mRNA 66095 75550 0.716363 + . ID=CGI_10005164; scaffold534 WUBlastX LINE_L1-Tx1 74255 75427 139 + . . scaffold534 GLEAN mRNA 66095 75550 0.716363 + . ID=CGI_10005164; scaffold79 WUBlastX DNA_TcMar-Tc1 872781 873314 299 - . . scaffold79 GLEAN mRNA 869143 880340 0.999287 - . ID=CGI_10024652; scaffold40512 WUBlastX DNA_IS4EU 53892 54428 446 - . . scaffold40512 GLEAN mRNA 53892 54428 0.999999 - . ID=CGI_10004194; scaffold40512 WUBlastX DNA_IS4EU 53550 54464 446 - . . scaffold40512 GLEAN mRNA 32163 58255 0.783329 + . ID=CGI_10004193; scaffold40512 WUBlastX DNA_IS4EU 55327 55611 46 - . . scaffold40512 GLEAN mRNA 32163 58255 0.783329 + . ID=CGI_10004193; scaffold31 WUBlastX DNA_Maverick 209048 209113 22 - . . scaffold31 GLEAN mRNA 202867 210562 0.991871 - . ID=CGI_10013561; scaffold1703 WUBlastX DNA_Maverick 222264 223553 140 - . . scaffold1703 GLEAN mRNA 215396 234951 0.309503 + . ID=CGI_10023049; scaffold43084 WUBlastX LINE_Penelope 2887 3426 258 - . . scaffold43084 GLEAN mRNA 1752 8491 0.988218 - . ID=CGI_10008563; scaffold1722 WUBlastX LINE_RTE-X 310365 311876 561 - . . scaffold1722 GLEAN mRNA 308195 316246 0.999949 - . ID=CGI_10014888; scaffold630 WUBlastX LTR_Gypsy 373614 373658 20 - . . scaffold630 GLEAN mRNA 373403 389900 0.98161 - . ID=CGI_10018333; scaffold619 WUBlastX LINE_RTE-X 143876 144619 183 - . . scaffold619 GLEAN mRNA 133305 165039 0.859619 - . ID=CGI_10025755; scaffold433 WUBlastX DNA_P 408795 409943 265 - . . scaffold433 GLEAN mRNA 407360 429733 0.877924 + . ID=CGI_10027068; scaffold1333 WUBlastX LTR_Ngaro 55292 56503 807 - . . scaffold1333 GLEAN mRNA 51293 57849 0.723221 - . ID=CGI_10009674; scaffold1792 WUBlastX LINE_RTE-X 262359 264071 692 + . . scaffold1792 GLEAN mRNA 252899 271519 0.999949 - . ID=CGI_10012749; scaffold286 WUBlastX LTR_Pao 288316 288804 83 - . . scaffold286 GLEAN mRNA 282191 289004 0.700364 - . ID=CGI_10015966; scaffold773 WUBlastX LTR_Gypsy 266699 267247 28 + . . scaffold773 GLEAN mRNA 235107 267865 0.138953 - . ID=CGI_10011348; scaffold387 WUBlastX LTR_Gypsy 35135 35368 55 - . . scaffold387 GLEAN mRNA 27360 40673 0.998991 + . ID=CGI_10004497; scaffold1481 WUBlastX LINE_L1-Tx1 28284 28559 73 + . . scaffold1481 GLEAN mRNA 18084 39742 0.999949 - . ID=CGI_10003892; scaffold447 WUBlastX LINE_L1-Tx1 29440 29808 45 + . . scaffold447 GLEAN mRNA 1608 38607 0.995957 + . ID=CGI_10014216; scaffold502 WUBlastX LINE_Penelope 280394 280507 47 - . . scaffold502 GLEAN mRNA 265921 292012 0.339102 + . ID=CGI_10024318; scaffold678 WUBlastX LINE_RTE-X 225118 225426 51 - . . scaffold678 GLEAN mRNA 217063 237953 0.926398 - . ID=CGI_10026343; scaffold1154 WUBlastX LINE_RTE-X 663186 663467 25 - . . scaffold1154 GLEAN mRNA 649267 674582 0.695104 - . ID=CGI_10026182; scaffold1671 WUBlastX RC_Helitron 221760 221864 21 + . . scaffold1671 GLEAN mRNA 221124 227498 0.633477 + . ID=CGI_10015147; scaffold1157 WUBlastX LINE_L2 229176 229319 29 - . . scaffold1157 GLEAN mRNA 212503 240416 0.462871 - . ID=CGI_10011221; scaffold1551 WUBlastX LTR_Gypsy-Cigr 54977 55156 71 - . . scaffold1551 GLEAN mRNA 48041 86336 0.263167 + . ID=CGI_10011471; scaffold392 WUBlastX LINE_CR1-L2 788996 789214 96 + . . scaffold392 GLEAN mRNA 784797 793663 0.791625 - . ID=CGI_10024236; scaffold852 WUBlastX DNA_IS4EU 127389 127541 52 + . . scaffold852 GLEAN mRNA 121104 128274 1 + . ID=CGI_10012039; scaffold332 WUBlastX DNA_TcMar-Marin 368182 368427 34 - . . scaffold332 GLEAN mRNA 366757 371898 1 - . ID=CGI_10020884; scaffold332 WUBlastX DNA_TcMar-Marin 368609 368776 36 - . . scaffold332 GLEAN mRNA 366757 371898 1 - . ID=CGI_10020884; scaffold1093 WUBlastX LINE_Penelope 405408 405791 37 - . . scaffold1093 GLEAN mRNA 404049 410721 0.987785 + . ID=CGI_10019807; scaffold866 WUBlastX LINE_L2 95251 95469 32 + . . scaffold866 GLEAN mRNA 85549 108844 0.993209 + . ID=CGI_10004749; scaffold149 WUBlastX LINE_RTE-BovB 233753 233881 80 - . . scaffold149 GLEAN mRNA 233711 233881 0.960172 - . ID=CGI_10025296; scaffold422 WUBlastX LINE_RTE-X 189685 189942 40 - . . scaffold422 GLEAN mRNA 175950 190221 0.980281 + . ID=CGI_10018798; C29438 WUBlastX LINE_RTE-X 2504 2878 37 + . . C29438 GLEAN mRNA 533 5889 1 + . ID=CGI_10000534; scaffold38780 WUBlastX DNA_PiggyBac 6648 6794 70 - . . scaffold38780 GLEAN mRNA 2671 16848 0.959487 - . ID=CGI_10002959; scaffold783 WUBlastX LINE_RTE-X 135984 136460 73 - . . scaffold783 GLEAN mRNA 131104 140635 0.99762 + . ID=CGI_10011677; scaffold41816 WUBlastX LTR_Ngaro 25070 25231 68 - . . scaffold41816 GLEAN mRNA 6032 28025 0.728522 - . ID=CGI_10005647; scaffold41816 WUBlastX LTR_Ngaro 25377 25496 27 - . . scaffold41816 GLEAN mRNA 6032 28025 0.728522 - . ID=CGI_10005647; scaffold41684 WUBlastX LTR_Ngaro 42120 42767 30 + . . scaffold41684 GLEAN mRNA 27935 49740 0.93781 - . ID=CGI_10005434; scaffold43964 WUBlastX DNA_hAT 131300 131416 62 + . . scaffold43964 GLEAN mRNA 129296 131440 1 + . ID=CGI_10014642; scaffold585 WUBlastX LINE_RTE-BovB 127806 128669 59 + . . scaffold585 GLEAN mRNA 123270 129092 1 - . ID=CGI_10005544; scaffold1682 WUBlastX LINE_L2 206326 206649 80 + . . scaffold1682 GLEAN mRNA 191866 233299 0.316426 - . ID=CGI_10016049; scaffold773 WUBlastX LINE_L2 151156 151680 64 + . . scaffold773 GLEAN mRNA 136190 154303 0.840493 - . ID=CGI_10011344; scaffold1650 WUBlastX LTR_DIRS 13432 13650 56 - . . scaffold1650 GLEAN mRNA 11438 15410 0.647114 - . ID=CGI_10017768; scaffold34732 WUBlastX LINE_L1-Tx1 16104 16385 47 + . . scaffold34732 GLEAN mRNA 11726 18752 1 - . ID=CGI_10001335; scaffold1448 WUBlastX LINE_RTE-X 4050 4229 102 - . . scaffold1448 GLEAN mRNA 631 18510 0.999948 + . ID=CGI_10011852; scaffold1447 WUBlastX LINE_RTE-X 149743 150027 115 - . . scaffold1447 GLEAN mRNA 145066 154561 0.838589 - . ID=CGI_10013818; scaffold631 WUBlastX LINE_RTE-X 224656 224961 69 + . . scaffold631 GLEAN mRNA 219246 234334 0.970776 - . ID=CGI_10014178; scaffold1670 WUBlastX LINE_CR1 398765 399175 104 + . . scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; scaffold40916 WUBlastX LINE_L2 38182 38928 80 + . . scaffold40916 GLEAN mRNA 5250 52256 0.246631 + . ID=CGI_10004570; scaffold40828 WUBlastX LTR_Gypsy 57493 57741 87 - . . scaffold40828 GLEAN mRNA 28348 61048 0.605765 + . ID=CGI_10004502; scaffold42030 WUBlastX LTR_Gypsy 14224 14346 31 + . . scaffold42030 GLEAN mRNA 13387 15078 0.965896 + . ID=CGI_10006041; scaffold38978 WUBlastX DNA_Harbinger 8441 8863 77 - . . scaffold38978 GLEAN mRNA 443 10686 0.499437 + . ID=CGI_10003126; scaffold38978 WUBlastX DNA_Harbinger 8441 8521 77 - . . scaffold38978 GLEAN mRNA 7539 8521 0.655792 - . ID=CGI_10003127; scaffold43242 WUBlastX DNA_TcMar-Tc1 28617 28739 58 + . . scaffold43242 GLEAN mRNA 27154 33595 0.878599 + . ID=CGI_10009544; scaffold419 WUBlastX DNA_IS4EU 191231 191386 107 - . . scaffold419 GLEAN mRNA 187518 193297 1 - . ID=CGI_10028330; scaffold659 WUBlastX DNA_IS4EU 14258 14575 77 - . . scaffold659 GLEAN mRNA 29 26278 0.692942 + . ID=CGI_10014692; scaffold38210 WUBlastX LINE_RTE-X 23150 23869 144 + . . scaffold38210 GLEAN mRNA 7747 30035 0.24289 - . ID=CGI_10002673; scaffold38210 WUBlastX LINE_RTE-X 24588 24764 140 + . . scaffold38210 GLEAN mRNA 7747 30035 0.24289 - . ID=CGI_10002673; scaffold38210 WUBlastX LINE_RTE-X 24776 25924 305 + . . scaffold38210 GLEAN mRNA 7747 30035 0.24289 - . ID=CGI_10002673; scaffold204 WUBlastX DNA_Crypton 595826 596782 109 + . . scaffold204 GLEAN mRNA 573438 596887 0.209879 + . ID=CGI_10026118; scaffold1231 WUBlastX LINE_RTE-BovB 106436 106615 57 + . . scaffold1231 GLEAN mRNA 79934 107425 0.93438 + . ID=CGI_10004703; scaffold1584 WUBlastX LINE_RTE-X 91995 92426 94 + . . scaffold1584 GLEAN mRNA 73868 96669 0.999351 - . ID=CGI_10015073; scaffold82 WUBlastX LINE_L1-Tx1 686689 687372 148 - . . scaffold82 GLEAN mRNA 671230 690151 0.999877 - . ID=CGI_10025267; scaffold82 WUBlastX LINE_L1-Tx1 687516 687845 169 - . . scaffold82 GLEAN mRNA 671230 690151 0.999877 - . ID=CGI_10025267; scaffold82 WUBlastX LINE_L1-Tx1 687827 688393 197 - . . scaffold82 GLEAN mRNA 671230 690151 0.999877 - . ID=CGI_10025267; scaffold82 WUBlastX LINE_L1-Tx1 688612 688911 89 - . . scaffold82 GLEAN mRNA 671230 690151 0.999877 - . ID=CGI_10025267; scaffold82 WUBlastX LINE_L1-Tx1 688929 689171 152 - . . scaffold82 GLEAN mRNA 671230 690151 0.999877 - . ID=CGI_10025267; scaffold580 WUBlastX LTR_Gypsy-Troyk 547518 547784 72 + . . scaffold580 GLEAN mRNA 534985 547949 0.999377 + . ID=CGI_10020515; scaffold481 WUBlastX LINE_L2 1209299 1209541 98 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold43660 WUBlastX DNA_IS4EU 82470 82760 143 + . . scaffold43660 GLEAN mRNA 73296 94423 0.650662 - . ID=CGI_10011661; scaffold1244 WUBlastX LINE_L1 100098 100226 24 + . . scaffold1244 GLEAN mRNA 89223 101617 0.299139 + . ID=CGI_10020820; scaffold599 WUBlastX LINE_RTE-X 375462 375719 166 - . . scaffold599 GLEAN mRNA 372668 382241 0.88989 - . ID=CGI_10021718; scaffold1350 WUBlastX LTR_DIRS 470092 471486 746 + . . scaffold1350 GLEAN mRNA 448816 473345 0.450856 - . ID=CGI_10017319; scaffold1213 WUBlastX LINE_L1-Tx1 414832 415284 170 - . . scaffold1213 GLEAN mRNA 408300 423198 0.400191 - . ID=CGI_10027450; scaffold950 WUBlastX LINE_L1-Tx1 101197 101556 151 + . . scaffold950 GLEAN mRNA 86388 112962 1 - . ID=CGI_10022920; scaffold1024 WUBlastX LINE_CR1 70811 71029 195 + . . scaffold1024 GLEAN mRNA 70811 87216 0.389681 + . ID=CGI_10028519; scaffold90 WUBlastX DNA_Harbinger 270999 271142 23 - . . scaffold90 GLEAN mRNA 265227 282021 0.629226 + . ID=CGI_10015170; scaffold456 WUBlastX LTR_Gypsy 141402 141776 73 + . . scaffold456 GLEAN mRNA 102025 155096 0.577611 + . ID=CGI_10006863; scaffold40832 WUBlastX LINE_RTE-BovB 81845 81904 25 - . . scaffold40832 GLEAN mRNA 51373 82869 0.350561 + . ID=CGI_10004457; scaffold433 WUBlastX DNA_Maverick 1261563 1261664 27 + . . scaffold433 GLEAN mRNA 1258038 1264095 0.626587 - . ID=CGI_10027122; scaffold1644 WUBlastX DNA_Academ 59113 59634 164 - . . scaffold1644 GLEAN mRNA 59083 88105 0.250771 - . ID=CGI_10004214; scaffold1644 WUBlastX DNA_Academ 60830 61432 135 - . . scaffold1644 GLEAN mRNA 59083 88105 0.250771 - . ID=CGI_10004214; scaffold1644 WUBlastX DNA_Academ 62122 62364 57 - . . scaffold1644 GLEAN mRNA 59083 88105 0.250771 - . ID=CGI_10004214; scaffold1644 WUBlastX DNA_Academ 62342 62539 67 - . . scaffold1644 GLEAN mRNA 59083 88105 0.250771 - . ID=CGI_10004214; scaffold42530 WUBlastX LINE_L2 46387 46458 27 + . . scaffold42530 GLEAN mRNA 44450 55395 0.966018 + . ID=CGI_10007161; scaffold1532 WUBlastX DNA_PiggyBac 609026 609265 35 - . . scaffold1532 GLEAN mRNA 606606 610636 0.502786 - . ID=CGI_10028261; scaffold35336 WUBlastX DNA_En-Spm 5616 7898 1261 + . . scaffold35336 GLEAN mRNA 20 10310 0.999999 - . ID=CGI_10001479; scaffold35336 WUBlastX DNA_En-Spm 6372 7898 1261 + . . scaffold35336 GLEAN mRNA 6372 7910 0.999785 + . ID=CGI_10001480; scaffold1108 WUBlastX DNA_En-Spm 63562 64854 1258 - . . scaffold1108 GLEAN mRNA 63550 64854 0.999999 - . ID=CGI_10021958; scaffold39196 WUBlastX DNA_Merlin 50391 50810 158 + . . scaffold39196 GLEAN mRNA 18014 59804 0.5589 - . ID=CGI_10003215; scaffold39196 WUBlastX DNA_Merlin 50391 50810 158 + . . scaffold39196 GLEAN mRNA 39677 52332 0.583111 + . ID=CGI_10003218; scaffold1373 WUBlastX LINE_RTE-X 1285 1884 147 + . . scaffold1373 GLEAN mRNA 600 7221 1 - . ID=CGI_10007903; scaffold602 WUBlastX LINE_RTE-X 41600 42073 202 - . . scaffold602 GLEAN mRNA 13092 44157 0.909253 + . ID=CGI_10023171; scaffold829 WUBlastX DNA_TcMar-Pogo 592274 592804 112 - . . scaffold829 GLEAN mRNA 577056 600770 0.812815 + . ID=CGI_10021152; scaffold404 WUBlastX LTR_DIRS 317796 318140 168 + . . scaffold404 GLEAN mRNA 311425 335048 0.297334 - . ID=CGI_10013607; scaffold404 WUBlastX LTR_DIRS 318101 318646 34 + . . scaffold404 GLEAN mRNA 311425 335048 0.297334 - . ID=CGI_10013607; scaffold1067 WUBlastX DNA_Sola 101968 102288 124 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold1599 WUBlastX LTR_Gypsy 240504 240791 137 - . . scaffold1599 GLEAN mRNA 238916 249872 0.993706 - . ID=CGI_10027143; scaffold588 WUBlastX LINE_L2 72036 72578 264 + . . scaffold588 GLEAN mRNA 27826 75048 0.701659 + . ID=CGI_10016209; scaffold425 WUBlastX DNA_IS4EU 128047 128349 145 - . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold1186 WUBlastX LTR_Pao 203845 205638 1384 + . . scaffold1186 GLEAN mRNA 187396 222353 0.578632 + . ID=CGI_10010597; scaffold619 WUBlastX DNA_hAT 745837 747360 277 + . . scaffold619 GLEAN mRNA 741975 747474 1 + . ID=CGI_10025783; scaffold1188 WUBlastX LTR_Ngaro 290760 291329 302 + . . scaffold1188 GLEAN mRNA 281129 295835 0.924496 + . ID=CGI_10025467; scaffold142 WUBlastX LINE_I 237191 239224 241 + . . scaffold142 GLEAN mRNA 226750 254431 0.969071 + . ID=CGI_10026760; scaffold42348 WUBlastX LINE_RTE-X 101194 101268 27 - . . scaffold42348 GLEAN mRNA 96568 107151 0.643244 - . ID=CGI_10006683; scaffold867 WUBlastX LINE_I 490722 490925 22 - . . scaffold867 GLEAN mRNA 490506 500925 0.812964 - . ID=CGI_10026232; scaffold36904 WUBlastX LINE_L2 26951 27760 345 - . . scaffold36904 GLEAN mRNA 10005 31731 0.991888 - . ID=CGI_10002168; scaffold43552 WUBlastX LTR_Gypsy 223501 224043 135 - . . scaffold43552 GLEAN mRNA 204428 227902 0.829194 - . ID=CGI_10011023; scaffold1097 WUBlastX LTR_Gypsy 862489 862953 165 + . . scaffold1097 GLEAN mRNA 848149 863853 0.999116 + . ID=CGI_10024555; scaffold347 WUBlastX LINE_CR1 130246 130407 105 + . . scaffold347 GLEAN mRNA 127096 135007 0.556255 - . ID=CGI_10021779; scaffold351 WUBlastX DNA_Sola 313642 314280 210 + . . scaffold351 GLEAN mRNA 306790 315103 0.777625 + . ID=CGI_10022605; scaffold351 WUBlastX DNA_Sola 314933 315085 108 + . . scaffold351 GLEAN mRNA 306790 315103 0.777625 + . ID=CGI_10022605; scaffold347 WUBlastX LTR_Pao 596347 598155 500 - . . scaffold347 GLEAN mRNA 592653 598604 0.749141 + . ID=CGI_10021803; scaffold222 WUBlastX LINE_L2 137512 137652 26 - . . scaffold222 GLEAN mRNA 134195 141016 0.626444 - . ID=CGI_10007124; scaffold544 WUBlastX LTR_Gypsy 729011 732565 579 - . . scaffold544 GLEAN mRNA 727518 748903 0.982522 - . ID=CGI_10022583; scaffold1423 WUBlastX LINE_RTE-BovB 714322 714444 33 + . . scaffold1423 GLEAN mRNA 702823 732700 0.440207 - . ID=CGI_10025438; scaffold1423 WUBlastX LINE_RTE-BovB 714696 715832 418 + . . scaffold1423 GLEAN mRNA 702823 732700 0.440207 - . ID=CGI_10025438; C35068 WUBlastX DNA_hAT-Tip100 5680 6423 428 + . . C35068 GLEAN mRNA 2139 13943 0.995001 + . ID=CGI_10001414; C35068 WUBlastX DNA_hAT-Tip100 7296 7610 187 + . . C35068 GLEAN mRNA 2139 13943 0.995001 + . ID=CGI_10001414; scaffold479 WUBlastX LTR_Ngaro 86158 86448 176 + . . scaffold479 GLEAN mRNA 82405 99723 0.898056 + . ID=CGI_10015682; scaffold479 WUBlastX LTR_Ngaro 86451 86630 66 + . . scaffold479 GLEAN mRNA 82405 99723 0.898056 + . ID=CGI_10015682; scaffold479 WUBlastX LTR_Ngaro 86630 87454 278 + . . scaffold479 GLEAN mRNA 82405 99723 0.898056 + . ID=CGI_10015682; scaffold583 WUBlastX LINE_CR1 746077 746562 368 - . . scaffold583 GLEAN mRNA 741499 750992 0.999674 - . ID=CGI_10023643; scaffold583 WUBlastX LINE_CR1 746077 746562 368 - . . scaffold583 GLEAN mRNA 742000 755299 0.5 + . ID=CGI_10023644; scaffold1009 WUBlastX LTR_Pao 251705 253387 633 - . . scaffold1009 GLEAN mRNA 246787 271005 0.99497 - . ID=CGI_10028723; scaffold41954 WUBlastX LINE_RTE-X 130568 131029 80 - . . scaffold41954 GLEAN mRNA 128673 136852 1 + . ID=CGI_10005855; scaffold43280 WUBlastX LTR_Gypsy 168040 168201 52 + . . scaffold43280 GLEAN mRNA 132335 177835 0.651964 - . ID=CGI_10009657; scaffold1186 WUBlastX LTR_Pao 200264 202597 735 + . . scaffold1186 GLEAN mRNA 187396 222353 0.578632 + . ID=CGI_10010597; scaffold577 WUBlastX DNA_Harbinger 182196 182564 383 + . . scaffold577 GLEAN mRNA 118575 184181 0.72743 - . ID=CGI_10009918; scaffold577 WUBlastX DNA_Harbinger 182642 183133 328 + . . scaffold577 GLEAN mRNA 118575 184181 0.72743 - . ID=CGI_10009918; scaffold43280 WUBlastX LTR_Gypsy 169721 170158 226 + . . scaffold43280 GLEAN mRNA 132335 177835 0.651964 - . ID=CGI_10009657; scaffold592 WUBlastX DNA_Academ 18749 18910 27 + . . scaffold592 GLEAN mRNA 3363 19316 0.499918 + . ID=CGI_10010700; scaffold977 WUBlastX LINE_CR1-L2 156277 156516 40 + . . scaffold977 GLEAN mRNA 146070 167200 0.562252 - . ID=CGI_10017163; scaffold38884 WUBlastX DNA?_Crypton? 49300 49533 57 + . . scaffold38884 GLEAN mRNA 44613 50381 1 - . ID=CGI_10003004; scaffold612 WUBlastX LTR_Gypsy 98419 98469 53 - . . scaffold612 GLEAN mRNA 97858 98469 0.449004 - . ID=CGI_10009462; scaffold772 WUBlastX DNA_hAT-Charlie 242445 242873 63 + . . scaffold772 GLEAN mRNA 238963 261048 0.714694 - . ID=CGI_10016587; scaffold481 WUBlastX DNA_IS4EU 1222899 1223114 50 + . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold37500 WUBlastX LTR_Gypsy 18299 18514 24 - . . scaffold37500 GLEAN mRNA 16467 40519 0.193393 - . ID=CGI_10002382; scaffold43954 WUBlastX DNA_TcMar-Tc1 190268 190501 75 - . . scaffold43954 GLEAN mRNA 188330 194166 0.997744 + . ID=CGI_10014580; scaffold1154 WUBlastX DNA_MuDR 401284 401583 39 - . . scaffold1154 GLEAN mRNA 400669 406858 0.774692 - . ID=CGI_10026168; scaffold1637 WUBlastX LTR_Gypsy 13563 14048 40 + . . scaffold1637 GLEAN mRNA 6795 17183 0.409292 + . ID=CGI_10010272; scaffold36998 WUBlastX LINE_L1 37296 37700 28 + . . scaffold36998 GLEAN mRNA 37104 39058 0.558395 + . ID=CGI_10002247; scaffold70 WUBlastX LTR_Gypsy 452799 453017 46 - . . scaffold70 GLEAN mRNA 452424 453119 0.996819 - . ID=CGI_10024770; scaffold552 WUBlastX LTR_DIRS 70424 70669 100 + . . scaffold552 GLEAN mRNA 69612 73670 0.367121 + . ID=CGI_10009321; scaffold1377 WUBlastX DNA_IS4EU 183339 183527 47 + . . scaffold1377 GLEAN mRNA 179618 201716 0.456444 + . ID=CGI_10008623; C34270 WUBlastX DNA_hAT-Blackja 7870 8055 30 + . . C34270 GLEAN mRNA 1937 17133 0.990126 - . ID=CGI_10001262; scaffold39134 WUBlastX RC_Helitron 54674 55141 43 - . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold547 WUBlastX LTR_Ngaro 429517 429600 28 + . . scaffold547 GLEAN mRNA 419498 445830 0.497938 - . ID=CGI_10018857; scaffold672 WUBlastX LINE_RTE-BovB 129733 130164 48 + . . scaffold672 GLEAN mRNA 126321 133472 0.990434 + . ID=CGI_10021024; scaffold40106 WUBlastX LINE_RTE-X 51049 51279 72 - . . scaffold40106 GLEAN mRNA 43451 51495 0.999465 - . ID=CGI_10003856; scaffold1409 WUBlastX LINE_L2 337570 337902 70 - . . scaffold1409 GLEAN mRNA 329296 337932 0.994281 + . ID=CGI_10013793; scaffold1409 WUBlastX LINE_L2 337570 337902 70 - . . scaffold1409 GLEAN mRNA 324495 351305 0.918932 - . ID=CGI_10013791; scaffold1050 WUBlastX LINE_L2 115644 115997 96 + . . scaffold1050 GLEAN mRNA 110488 131637 0.740819 + . ID=CGI_10009172; scaffold41242 WUBlastX LTR_Gypsy 29405 29434 47 + . . scaffold41242 GLEAN mRNA 28835 29434 0.478775 + . ID=CGI_10004880; scaffold41242 WUBlastX LTR_Gypsy 29519 30064 47 + . . scaffold41242 GLEAN mRNA 29519 30064 0.480836 + . ID=CGI_10004881; scaffold41242 WUBlastX LTR_Gypsy 30075 30290 47 + . . scaffold41242 GLEAN mRNA 30075 30290 0.999372 + . ID=CGI_10004882; scaffold1333 WUBlastX LTR_ERV1 56872 56934 23 - . . scaffold1333 GLEAN mRNA 51293 57849 0.723221 - . ID=CGI_10009674; scaffold335 WUBlastX DNA_MuDR 479784 479813 34 + . . scaffold335 GLEAN mRNA 469736 479813 0.288148 + . ID=CGI_10017112; scaffold1227 WUBlastX DNA_Kolobok-Hyd 210463 211035 43 + . . scaffold1227 GLEAN mRNA 209453 211287 0.982351 + . ID=CGI_10010056; scaffold419 WUBlastX LINE_CR1 1269810 1269941 22 - . . scaffold419 GLEAN mRNA 1266298 1276946 0.922495 + . ID=CGI_10028402; scaffold751 WUBlastX LINE_L2 411625 411837 79 + . . scaffold751 GLEAN mRNA 408046 415763 1 - . ID=CGI_10017403; scaffold192 WUBlastX LTR_Gypsy 665462 665587 50 + . . scaffold192 GLEAN mRNA 655198 676504 0.999922 - . ID=CGI_10023723; scaffold35712 WUBlastX LINE_L1 8249 8287 22 + . . scaffold35712 GLEAN mRNA 3858 24173 0.47659 + . ID=CGI_10001589; scaffold191 WUBlastX DNA_MuDR 551857 552282 68 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold203 WUBlastX DNA_TcMar-Marin 111409 111600 23 - . . scaffold203 GLEAN mRNA 85709 116665 0.258685 + . ID=CGI_10021064; scaffold48 WUBlastX LINE_L1-Tx1 139943 140296 85 - . . scaffold48 GLEAN mRNA 124474 140752 0.924637 + . ID=CGI_10023885; scaffold40564 WUBlastX LINE_L1 8342 8851 34 + . . scaffold40564 GLEAN mRNA 6674 28756 0.488599 + . ID=CGI_10004207; scaffold36898 WUBlastX LTR_Pao 709 810 112 + . . scaffold36898 GLEAN mRNA 700 1422 0.573259 - . ID=CGI_10002175; scaffold31382 WUBlastX LTR_Pao 6178 6279 112 + . . scaffold31382 GLEAN mRNA 6169 6891 0.573096 - . ID=CGI_10000732; scaffold1349 WUBlastX LINE_CR1-L2 101342 101686 96 + . . scaffold1349 GLEAN mRNA 98417 106130 0.988431 - . ID=CGI_10009938; scaffold1345 WUBlastX LTR_Gypsy 240081 240335 145 - . . scaffold1345 GLEAN mRNA 239892 251479 1 - . ID=CGI_10016283; scaffold36598 WUBlastX DNA_IS4EU 12892 13779 61 - . . scaffold36598 GLEAN mRNA 10870 17380 0.999993 + . ID=CGI_10002012; scaffold1870 WUBlastX LINE_RTE-X 109683 110138 79 + . . scaffold1870 GLEAN mRNA 96078 123718 0.283709 - . ID=CGI_10013182; C33654 WUBlastX LINE_RTE-X 11885 12190 66 + . . C33654 GLEAN mRNA 2501 14319 0.999996 + . ID=CGI_10001111; scaffold156 WUBlastX LTR_Gypsy 25513 25593 21 + . . scaffold156 GLEAN mRNA 14763 25823 0.782343 + . ID=CGI_10026471; scaffold1589 WUBlastX LINE_Penelope 128421 129014 63 + . . scaffold1589 GLEAN mRNA 111686 137363 0.668529 + . ID=CGI_10024108; scaffold304 WUBlastX LTR_Ngaro 334073 334357 116 + . . scaffold304 GLEAN mRNA 327782 339627 0.999019 - . ID=CGI_10016567; scaffold152 WUBlastX LINE_L1-Tx1 335072 335674 103 - . . scaffold152 GLEAN mRNA 326766 349856 0.295405 + . ID=CGI_10014899; scaffold853 WUBlastX LTR_Gypsy-Troyk 452054 452149 37 - . . scaffold853 GLEAN mRNA 448693 455013 0.999949 - . ID=CGI_10017517; scaffold3 WUBlastX LTR_Ngaro 1317717 1317779 26 - . . scaffold3 GLEAN mRNA 1314645 1318382 0.999612 - . ID=CGI_10027337; scaffold3 WUBlastX LTR_Ngaro 1317781 1318104 102 - . . scaffold3 GLEAN mRNA 1314645 1318382 0.999612 - . ID=CGI_10027337; scaffold1532 WUBlastX DNA_Kolobok-IS4 397397 397744 94 + . . scaffold1532 GLEAN mRNA 391874 403369 0.462643 + . ID=CGI_10028249; scaffold587 WUBlastX DNA_TcMar-ISRm1 2789 3472 104 + . . scaffold587 GLEAN mRNA 1966 7737 0.999375 - . ID=CGI_10006887; scaffold38058 WUBlastX LTR_Gypsy 4666 5133 67 - . . scaffold38058 GLEAN mRNA 3486 8173 0.999159 - . ID=CGI_10002595; scaffold780 WUBlastX LINE_L2 149823 150161 93 - . . scaffold780 GLEAN mRNA 138989 166483 0.986281 + . ID=CGI_10024719; scaffold578 WUBlastX LINE_RTE-X 357827 358039 90 + . . scaffold578 GLEAN mRNA 348664 361929 0.458006 + . ID=CGI_10015130; scaffold451 WUBlastX LTR_Gypsy 64351 66273 1003 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold39096 WUBlastX LTR_Gypsy-Cigr 50963 51553 169 + . . scaffold39096 GLEAN mRNA 50582 58209 0.813277 + . ID=CGI_10003149; C31366 WUBlastX DNA_Academ 1807 2079 87 - . . C31366 GLEAN mRNA 393 6299 0.999547 - . ID=CGI_10000739; scaffold43008 WUBlastX DNA_Kolobok 54859 55020 89 + . . scaffold43008 GLEAN mRNA 53966 64440 0.597586 + . ID=CGI_10008461; scaffold39966 WUBlastX DNA_Zator 7739 8734 131 + . . scaffold39966 GLEAN mRNA 5670 20559 0.999675 + . ID=CGI_10003724; scaffold1831 WUBlastX LINE_RTE-X 23335 24765 944 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold412 WUBlastX LINE_L1-Tx1 145355 147283 650 + . . scaffold412 GLEAN mRNA 141227 160730 0.499998 - . ID=CGI_10018560; scaffold40076 WUBlastX LTR_Gypsy-Cigr 62600 62827 89 + . . scaffold40076 GLEAN mRNA 50026 69256 0.72657 + . ID=CGI_10003787; scaffold40584 WUBlastX LINE_CR1 58430 58894 133 + . . scaffold40584 GLEAN mRNA 39320 59449 0.702301 + . ID=CGI_10004249; scaffold42392 WUBlastX LTR_Gypsy 147606 148058 170 - . . scaffold42392 GLEAN mRNA 146946 151067 0.782062 + . ID=CGI_10006786; scaffold43574 WUBlastX LINE_RTE-BovB 246241 246798 126 + . . scaffold43574 GLEAN mRNA 246020 254223 1 - . ID=CGI_10010884; scaffold601 WUBlastX LINE_RTE-X 834209 834331 67 + . . scaffold601 GLEAN mRNA 814190 834629 0.512568 + . ID=CGI_10026849; scaffold678 WUBlastX LTR_Ngaro 89942 90610 41 - . . scaffold678 GLEAN mRNA 85525 97631 0.702112 + . ID=CGI_10026333; scaffold401 WUBlastX LINE_RTE-X 156159 156374 102 - . . scaffold401 GLEAN mRNA 151217 157765 0.728444 + . ID=CGI_10006994; scaffold43538 WUBlastX LTR_Gypsy-Cigr 32075 32515 178 + . . scaffold43538 GLEAN mRNA 31086 35366 0.988787 - . ID=CGI_10010813; scaffold1588 WUBlastX LINE_RTE-X 75733 75993 28 + . . scaffold1588 GLEAN mRNA 56027 117187 0.840099 - . ID=CGI_10014772; scaffold751 WUBlastX LINE_RTE-X 246410 246955 104 + . . scaffold751 GLEAN mRNA 235635 247422 0.327254 - . ID=CGI_10017389; scaffold655 WUBlastX LINE_L2 316428 316733 62 - . . scaffold655 GLEAN mRNA 288551 322246 0.783926 + . ID=CGI_10014958; scaffold655 WUBlastX LINE_L2 317070 318479 427 - . . scaffold655 GLEAN mRNA 288551 322246 0.783926 + . ID=CGI_10014958; scaffold655 WUBlastX LINE_L2 318302 318766 239 - . . scaffold655 GLEAN mRNA 288551 322246 0.783926 + . ID=CGI_10014958; scaffold655 WUBlastX LINE_L2 318970 319449 148 - . . scaffold655 GLEAN mRNA 288551 322246 0.783926 + . ID=CGI_10014958; scaffold655 WUBlastX LINE_L2 319454 319960 128 - . . scaffold655 GLEAN mRNA 288551 322246 0.783926 + . ID=CGI_10014958; scaffold1670 WUBlastX LINE_CR1 404065 404610 160 + . . scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; scaffold109 WUBlastX DNA_TcMar-Tc1 252374 253243 185 - . . scaffold109 GLEAN mRNA 221861 297851 0.997753 - . ID=CGI_10022112; scaffold1579 WUBlastX LINE_L1 324997 325464 39 + . . scaffold1579 GLEAN mRNA 320598 331843 0.999956 + . ID=CGI_10016869; scaffold695 WUBlastX LINE_L1-Tx1 88604 88663 26 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold1322 WUBlastX LTR_Ngaro 588850 589128 49 - . . scaffold1322 GLEAN mRNA 571511 590238 0.999351 - . ID=CGI_10019486; scaffold453 WUBlastX DNA_Harbinger 310814 310972 94 - . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold392 WUBlastX DNA_Kolobok 898456 898650 35 - . . scaffold392 GLEAN mRNA 896113 900283 0.782453 - . ID=CGI_10024239; scaffold38306 WUBlastX LINE_L1-Tx1 7256 7525 192 + . . scaffold38306 GLEAN mRNA 6272 12349 0.99842 - . ID=CGI_10002711; scaffold1054 WUBlastX LINE_L2 313351 315762 1402 + . . scaffold1054 GLEAN mRNA 312606 322566 0.968602 + . ID=CGI_10012967; scaffold1104 WUBlastX DNA_IS4EU 525979 526422 182 - . . scaffold1104 GLEAN mRNA 524853 533185 0.523865 + . ID=CGI_10020392; scaffold1104 WUBlastX DNA_IS4EU 525979 526422 182 - . . scaffold1104 GLEAN mRNA 502059 528268 0.99448 - . ID=CGI_10020391; scaffold1191 WUBlastX LTR_DIRS 84999 85310 238 - . . scaffold1191 GLEAN mRNA 65394 88286 0.517666 - . ID=CGI_10005211; scaffold1788 WUBlastX DNA_hAT-Tip100 6482 8131 265 + . . scaffold1788 GLEAN mRNA 1232 23874 0.618655 + . ID=CGI_10019910; scaffold459 WUBlastX LINE_RTE-X 22894 23619 209 + . . scaffold459 GLEAN mRNA 19846 31339 0.918956 - . ID=CGI_10018165; scaffold459 WUBlastX LINE_RTE-X 22894 23619 209 + . . scaffold459 GLEAN mRNA 19774 37824 0.650564 + . ID=CGI_10018164; scaffold1402 WUBlastX DNA_TcMar-Tc1 404565 404864 155 + . . scaffold1402 GLEAN mRNA 402740 419521 0.863535 + . ID=CGI_10017593; scaffold1036 WUBlastX DNA_Maverick 202433 202915 187 - . . scaffold1036 GLEAN mRNA 202062 206192 0.444605 - . ID=CGI_10019953; scaffold1714 WUBlastX LINE_L2 311338 311820 183 - . . scaffold1714 GLEAN mRNA 306589 325335 0.999557 + . ID=CGI_10013680; scaffold1188 WUBlastX LINE_Penelope 164809 165408 205 - . . scaffold1188 GLEAN mRNA 159311 176924 0.555609 - . ID=CGI_10025460; scaffold1188 WUBlastX LINE_Penelope 165395 165580 73 - . . scaffold1188 GLEAN mRNA 159311 176924 0.555609 - . ID=CGI_10025460; scaffold40928 WUBlastX LINE_CR1 40607 40849 65 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold425 WUBlastX DNA_Kolobok-IS4 128047 128514 141 - . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold41242 WUBlastX LINE_L1-Tx1 99802 100092 40 + . . scaffold41242 GLEAN mRNA 97496 109439 0.170639 - . ID=CGI_10004889; scaffold914 WUBlastX DNA_TcMar-Tc1 256668 257072 120 - . . scaffold914 GLEAN mRNA 255125 272585 0.997448 + . ID=CGI_10018883; scaffold513 WUBlastX DNA_Kolobok-IS4 155792 156529 371 + . . scaffold513 GLEAN mRNA 149609 156857 0.819622 - . ID=CGI_10022138; scaffold664 WUBlastX LTR_Pao 648781 649170 289 + . . scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold733 WUBlastX DNA_TcMar-Tc1 268580 269611 374 - . . scaffold733 GLEAN mRNA 240072 273270 0.998744 + . ID=CGI_10025870; scaffold42364 WUBlastX LINE_CR1-L2 73859 74110 36 - . . scaffold42364 GLEAN mRNA 72172 88504 0.999923 + . ID=CGI_10006723; scaffold42364 WUBlastX LINE_CR1-L2 74590 76053 189 - . . scaffold42364 GLEAN mRNA 72172 88504 0.999923 + . ID=CGI_10006723; scaffold40264 WUBlastX LINE_RTE-X 49754 51316 413 - . . scaffold40264 GLEAN mRNA 10435 67637 0.512371 + . ID=CGI_10004012; scaffold42836 WUBlastX LINE_RTE-X 167153 168379 392 + . . scaffold42836 GLEAN mRNA 143632 181424 1 + . ID=CGI_10007862; scaffold321 WUBlastX LTR_Gypsy 479049 479135 36 + . . scaffold321 GLEAN mRNA 474717 485753 0.439448 - . ID=CGI_10020812; scaffold39134 WUBlastX LTR_Gypsy 49013 49435 189 + . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold42274 WUBlastX DNA_hAT 11905 12012 71 - . . scaffold42274 GLEAN mRNA 8593 13901 0.722974 - . ID=CGI_10006509; scaffold976 WUBlastX LTR_Gypsy-Cigr 41451 42443 524 - . . scaffold976 GLEAN mRNA 40652 60127 0.884558 - . ID=CGI_10014002; scaffold976 WUBlastX LTR_Gypsy-Cigr 42410 42889 209 - . . scaffold976 GLEAN mRNA 40652 60127 0.884558 - . ID=CGI_10014002; scaffold94 WUBlastX LTR_Gypsy 66488 66799 121 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold1663 WUBlastX DNA_MuDR 106829 108034 377 - . . scaffold1663 GLEAN mRNA 68504 119090 0.88293 - . ID=CGI_10009864; scaffold1663 WUBlastX DNA_MuDR 108075 108521 178 - . . scaffold1663 GLEAN mRNA 68504 119090 0.88293 - . ID=CGI_10009864; scaffold1663 WUBlastX DNA_MuDR 108473 108913 29 - . . scaffold1663 GLEAN mRNA 68504 119090 0.88293 - . ID=CGI_10009864; scaffold550 WUBlastX LTR_Gypsy 194008 194847 132 - . . scaffold550 GLEAN mRNA 192301 204322 0.634785 + . ID=CGI_10012493; scaffold1104 WUBlastX LINE_R2-Hero 427462 427665 105 + . . scaffold1104 GLEAN mRNA 427462 427692 0.999372 + . ID=CGI_10020385; scaffold39642 WUBlastX DNA_Maverick 13146 13319 106 - . . scaffold39642 GLEAN mRNA 12930 17873 0.634289 + . ID=CGI_10003495; scaffold39642 WUBlastX DNA_Maverick 13403 13714 144 - . . scaffold39642 GLEAN mRNA 12930 17873 0.634289 + . ID=CGI_10003495; scaffold39642 WUBlastX DNA_Maverick 13717 14328 88 - . . scaffold39642 GLEAN mRNA 12930 17873 0.634289 + . ID=CGI_10003495; scaffold39642 WUBlastX DNA_Maverick 14386 15114 26 - . . scaffold39642 GLEAN mRNA 12930 17873 0.634289 + . ID=CGI_10003495; scaffold714 WUBlastX DNA_TcMar-Marin 87952 88245 26 - . . scaffold714 GLEAN mRNA 72326 94511 0.727136 + . ID=CGI_10016640; scaffold501 WUBlastX LINE_L2 1210962 1211111 86 + . . scaffold501 GLEAN mRNA 1202814 1224035 0.789617 + . ID=CGI_10027546; scaffold1877 WUBlastX LINE_Rex-Babar 298001 298309 47 + . . scaffold1877 GLEAN mRNA 295978 306967 1 + . ID=CGI_10011963; scaffold723 WUBlastX LINE_L1 313507 313758 46 + . . scaffold723 GLEAN mRNA 313507 313764 0.481188 + . ID=CGI_10015269; scaffold1820 WUBlastX DNA_IS4EU 10438 10632 21 - . . scaffold1820 GLEAN mRNA 4378 12719 0.840322 + . ID=CGI_10002445; scaffold1017 WUBlastX LINE_L1 3071 3406 28 + . . scaffold1017 GLEAN mRNA 2075 8937 1 - . ID=CGI_10024977; scaffold323 WUBlastX DNA_Kolobok-Hyd 123085 123402 58 - . . scaffold323 GLEAN mRNA 122863 123402 0.649599 - . ID=CGI_10009779; scaffold1867 WUBlastX DNA_Kolobok-Hyd 106707 106868 21 + . . scaffold1867 GLEAN mRNA 102678 111179 0.989687 + . ID=CGI_10006446; scaffold99 WUBlastX DNA_MuDR 240685 240960 26 + . . scaffold99 GLEAN mRNA 235492 241625 0.649382 + . ID=CGI_10021195; scaffold99 WUBlastX DNA_MuDR 241548 241625 34 + . . scaffold99 GLEAN mRNA 235492 241625 0.649382 + . ID=CGI_10021195; C33864 WUBlastX LINE_Jockey 7549 7686 20 - . . C33864 GLEAN mRNA 4487 13917 0.999834 - . ID=CGI_10001156; scaffold1024 WUBlastX LINE_CR1 896943 896963 24 - . . scaffold1024 GLEAN mRNA 896685 896963 0.999372 - . ID=CGI_10028552; scaffold1286 WUBlastX LINE_L2 4242 4367 29 - . . scaffold1286 GLEAN mRNA 2541 6494 0.999936 - . ID=CGI_10009504; scaffold20 WUBlastX DNA_TcMar-Pogo 86062 86337 45 - . . scaffold20 GLEAN mRNA 85901 95584 0.999992 + . ID=CGI_10023562; scaffold549 WUBlastX LINE_RTE-X 8122 8202 36 - . . scaffold549 GLEAN mRNA 463 9456 0.999993 + . ID=CGI_10004100; scaffold1301 WUBlastX LINE_RTE-X 1244784 1245041 33 + . . scaffold1301 GLEAN mRNA 1240763 1263950 0.99974 - . ID=CGI_10027768; scaffold451 WUBlastX LINE_L1-Tx1 88494 88589 26 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold41928 WUBlastX DNA_Zator 35796 36233 42 + . . scaffold41928 GLEAN mRNA 28917 39705 0.734554 - . ID=CGI_10005836; scaffold210 WUBlastX DNA_Crypton 427140 427637 28 + . . scaffold210 GLEAN mRNA 426681 440258 0.999993 - . ID=CGI_10015907; scaffold1671 WUBlastX RC_Helitron 221739 221831 32 + . . scaffold1671 GLEAN mRNA 221124 227498 0.633477 + . ID=CGI_10015147; scaffold1671 WUBlastX RC_Helitron 222795 222857 37 + . . scaffold1671 GLEAN mRNA 221124 227498 0.633477 + . ID=CGI_10015147; scaffold42770 WUBlastX DNA_Harbinger 53297 53331 22 + . . scaffold42770 GLEAN mRNA 53297 53668 0.618185 + . ID=CGI_10007689; scaffold42770 WUBlastX DNA_Harbinger 53297 53668 24 + . . scaffold42770 GLEAN mRNA 53297 53668 0.618185 + . ID=CGI_10007689; scaffold44098 WUBlastX LINE_RTE-X 119701 119952 28 - . . scaffold44098 GLEAN mRNA 115382 139154 0.999935 - . ID=CGI_10017702; scaffold1743 WUBlastX LINE_RTE-X 233986 234471 41 - . . scaffold1743 GLEAN mRNA 225368 248286 0.742801 - . ID=CGI_10011658; scaffold695 WUBlastX DNA_Sola 681165 681380 39 + . . scaffold695 GLEAN mRNA 679649 687382 0.99962 - . ID=CGI_10023301; scaffold1233 WUBlastX LTR_Ngaro 7666 7947 66 - . . scaffold1233 GLEAN mRNA 818 16086 0.387616 - . ID=CGI_10003098; scaffold626 WUBlastX RC_Helitron 54144 54431 119 - . . scaffold626 GLEAN mRNA 35526 64232 0.361303 - . ID=CGI_10019977; scaffold750 WUBlastX DNA_IS4EU 110096 110302 68 + . . scaffold750 GLEAN mRNA 95673 121067 0.651358 - . ID=CGI_10022212; scaffold317 WUBlastX DNA_Kolobok 206631 206939 33 - . . scaffold317 GLEAN mRNA 202383 206966 0.755515 - . ID=CGI_10019348; scaffold149 WUBlastX LINE_L1-Tx1 958976 959122 28 - . . scaffold149 GLEAN mRNA 948392 959761 0.932291 - . ID=CGI_10025333; scaffold35538 WUBlastX LINE_RTE-X 20932 21357 20 - . . scaffold35538 GLEAN mRNA 14229 24935 0.828916 + . ID=CGI_10001559; scaffold606 WUBlastX LTR_Gypsy-Troyk 6984 7067 81 + . . scaffold606 GLEAN mRNA 6984 7199 0.73346 + . ID=CGI_10012937; scaffold90 WUBlastX DNA_TcMar-Marin 384849 385406 83 + . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold40560 WUBlastX DNA_Harbinger 60566 60757 39 - . . scaffold40560 GLEAN mRNA 52941 60910 0.709835 - . ID=CGI_10004230; scaffold35138 WUBlastX DNA_Sola 23323 23490 65 + . . scaffold35138 GLEAN mRNA 21236 24231 0.999675 + . ID=CGI_10001519; scaffold41344 WUBlastX LINE_L1-Tx1 6527 6538 32 + . . scaffold41344 GLEAN mRNA 6527 6937 1 + . ID=CGI_10004978; scaffold39120 WUBlastX LTR_Ngaro 45981 46208 102 - . . scaffold39120 GLEAN mRNA 36514 50111 0.858496 + . ID=CGI_10003188; scaffold38532 WUBlastX LTR_Ngaro 56511 56702 83 - . . scaffold38532 GLEAN mRNA 48785 56819 0.999998 - . ID=CGI_10002832; scaffold37794 WUBlastX DNA_hAT-Tip100 34767 34964 115 - . . scaffold37794 GLEAN mRNA 31174 37793 0.544852 + . ID=CGI_10002501; scaffold316 WUBlastX LTR_Gypsy 16554 16790 49 + . . scaffold316 GLEAN mRNA 23 25141 0.301379 - . ID=CGI_10001602; scaffold313 WUBlastX LINE_RTE-X 134319 134557 77 + . . scaffold313 GLEAN mRNA 134319 135998 0.83601 - . ID=CGI_10026584; scaffold723 WUBlastX DNA_Sola 76391 76759 86 + . . scaffold723 GLEAN mRNA 67351 82227 0.542233 + . ID=CGI_10015256; scaffold211 WUBlastX DNA_Sola 1274697 1275065 83 + . . scaffold211 GLEAN mRNA 1267052 1275741 1 - . ID=CGI_10026994; scaffold43182 WUBlastX LTR_Gypsy 168404 168475 30 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold780 WUBlastX LTR_Ngaro 965152 965664 45 + . . scaffold780 GLEAN mRNA 959842 972028 0.999936 - . ID=CGI_10024749; scaffold675 WUBlastX DNA_TcMar-Marin 115406 115804 80 - . . scaffold675 GLEAN mRNA 109657 116904 0.999611 - . ID=CGI_10017856; scaffold146 WUBlastX LINE_RTE-X 453034 453384 96 - . . scaffold146 GLEAN mRNA 445752 454994 0.544479 - . ID=CGI_10024906; scaffold986 WUBlastX LINE_RTE-BovB 232839 233090 74 - . . scaffold986 GLEAN mRNA 229802 234961 0.889891 - . ID=CGI_10009965; scaffold507 WUBlastX DNA_Sola 29326 29385 32 + . . scaffold507 GLEAN mRNA 28082 39253 0.563608 + . ID=CGI_10019083; scaffold507 WUBlastX DNA_Sola 29739 29858 107 + . . scaffold507 GLEAN mRNA 28082 39253 0.563608 + . ID=CGI_10019083; scaffold1777 WUBlastX LTR_Ngaro 8763 8855 55 + . . scaffold1777 GLEAN mRNA 5363 10416 0.999547 + . ID=CGI_10003152; scaffold113 WUBlastX LTR_Ngaro 117182 117922 59 + . . scaffold113 GLEAN mRNA 112752 117970 0.458528 + . ID=CGI_10021286; scaffold1722 WUBlastX LINE_L2 112386 112679 75 + . . scaffold1722 GLEAN mRNA 110785 118897 0.558395 + . ID=CGI_10014874; scaffold1722 WUBlastX LINE_L2 112386 112679 75 + . . scaffold1722 GLEAN mRNA 111167 115218 0.99733 - . ID=CGI_10014875; scaffold1094 WUBlastX DNA_Kolobok-IS4 638093 638497 72 - . . scaffold1094 GLEAN mRNA 609558 640373 0.531771 - . ID=CGI_10021838; scaffold392 WUBlastX DNA_Kolobok 46125 46229 24 + . . scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; scaffold161 WUBlastX LTR_DIRS 112465 112689 133 + . . scaffold161 GLEAN mRNA 106688 117037 0.832376 + . ID=CGI_10008589; scaffold42326 WUBlastX LINE_RTE-BovB 72088 72285 106 - . . scaffold42326 GLEAN mRNA 66289 74276 1 + . ID=CGI_10006692; scaffold366 WUBlastX DNA_Harbinger 119074 119382 79 - . . scaffold366 GLEAN mRNA 106879 123133 0.490969 + . ID=CGI_10007776; scaffold1490 WUBlastX DNA_NOF 206842 207033 70 + . . scaffold1490 GLEAN mRNA 170500 224827 0.659104 + . ID=CGI_10014912; scaffold1490 WUBlastX DNA_NOF 207395 208099 88 + . . scaffold1490 GLEAN mRNA 170500 224827 0.659104 + . ID=CGI_10014912; scaffold1423 WUBlastX LTR_Ngaro 726990 728552 946 - . . scaffold1423 GLEAN mRNA 702823 732700 0.440207 - . ID=CGI_10025438; scaffold599 WUBlastX LTR_Pao 31237 31500 167 + . . scaffold599 GLEAN mRNA 29083 62122 0.696781 + . ID=CGI_10021706; scaffold43134 WUBlastX DNA_IS4EU 211417 211920 177 + . . scaffold43134 GLEAN mRNA 205984 218530 0.990712 + . ID=CGI_10008898; scaffold34106 WUBlastX LTR_DIRS 11729 12319 420 + . . scaffold34106 GLEAN mRNA 1207 14937 0.504518 - . ID=CGI_10001211; scaffold34106 WUBlastX LTR_DIRS 12869 13531 412 + . . scaffold34106 GLEAN mRNA 1207 14937 0.504518 - . ID=CGI_10001211; scaffold1769 WUBlastX DNA_Crypton 194019 194324 176 + . . scaffold1769 GLEAN mRNA 194019 207786 0.990769 + . ID=CGI_10009243; scaffold853 WUBlastX LTR_Gypsy 452364 452669 98 - . . scaffold853 GLEAN mRNA 448693 455013 0.999949 - . ID=CGI_10017517; scaffold149 WUBlastX DNA_Harbinger 998912 999298 158 + . . scaffold149 GLEAN mRNA 989278 1013104 0.999502 - . ID=CGI_10025337; scaffold149 WUBlastX DNA_Harbinger 998912 999298 158 + . . scaffold149 GLEAN mRNA 998861 1001294 1 + . ID=CGI_10025338; scaffold1097 WUBlastX LTR_Ngaro 577862 578173 78 + . . scaffold1097 GLEAN mRNA 566282 590466 0.579339 - . ID=CGI_10024535; scaffold588 WUBlastX LTR_Gypsy-Cigr 400920 403151 1104 - . . scaffold588 GLEAN mRNA 392510 405723 0.983024 + . ID=CGI_10016225; scaffold163 WUBlastX LTR_Ngaro 109614 110210 131 + . . scaffold163 GLEAN mRNA 103633 112444 0.895517 + . ID=CGI_10018610; scaffold1174 WUBlastX DNA_hAT-Blackja 1074693 1074815 55 - . . scaffold1174 GLEAN mRNA 1072564 1077795 0.506907 + . ID=CGI_10026080; scaffold1255 WUBlastX LTR_Gypsy 393448 393915 94 + . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold271 WUBlastX LINE_L2 201391 202701 89 + . . scaffold271 GLEAN mRNA 188870 219899 0.29689 - . ID=CGI_10024460; scaffold12 WUBlastX LTR_Gypsy 295322 295633 65 - . . scaffold12 GLEAN mRNA 290334 319375 0.793549 - . ID=CGI_10018039; scaffold1376 WUBlastX LINE_L1 42655 42720 20 - . . scaffold1376 GLEAN mRNA 39109 52499 0.502849 - . ID=CGI_10002795; C33658 WUBlastX DNA_Sola 10953 11453 59 + . . C33658 GLEAN mRNA 10027 15037 0.499831 - . ID=CGI_10001113; C33658 WUBlastX DNA_Sola 11642 12106 108 + . . C33658 GLEAN mRNA 10027 15037 0.499831 - . ID=CGI_10001113; scaffold1447 WUBlastX DNA_TcMar-Tc1 152966 153091 63 - . . scaffold1447 GLEAN mRNA 145066 154561 0.838589 - . ID=CGI_10013818; scaffold41816 WUBlastX LTR_Ngaro 23906 24235 111 - . . scaffold41816 GLEAN mRNA 6032 28025 0.728522 - . ID=CGI_10005647; scaffold40424 WUBlastX DNA_Sola 25065 25292 160 - . . scaffold40424 GLEAN mRNA 14342 47521 0.651302 - . ID=CGI_10004127; scaffold1589 WUBlastX LTR_Gypsy-Cigr 282617 284251 888 - . . scaffold1589 GLEAN mRNA 279757 287553 0.968345 - . ID=CGI_10024110; scaffold934 WUBlastX LTR_Ngaro 407125 407646 232 + . . scaffold934 GLEAN mRNA 385356 409492 0.99982 + . ID=CGI_10015451; scaffold1281 WUBlastX LTR_DIRS 10416 10940 214 + . . scaffold1281 GLEAN mRNA 6818 22494 0.72874 + . ID=CGI_10001420; scaffold1281 WUBlastX LTR_DIRS 11742 12266 214 - . . scaffold1281 GLEAN mRNA 6818 22494 0.72874 + . ID=CGI_10001420; scaffold513 WUBlastX LTR_Pao 12870 13070 178 + . . scaffold513 GLEAN mRNA 2113 39536 0.917684 + . ID=CGI_10022134; scaffold453 WUBlastX DNA_Harbinger 310250 310681 180 - . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold38626 WUBlastX LINE_CR1 27131 27427 156 - . . scaffold38626 GLEAN mRNA 19577 33145 1 - . ID=CGI_10002868; scaffold1532 WUBlastX DNA_PiggyBac 606633 607109 160 - . . scaffold1532 GLEAN mRNA 606606 610636 0.502786 - . ID=CGI_10028261; scaffold1532 WUBlastX DNA_PiggyBac 607338 607526 105 - . . scaffold1532 GLEAN mRNA 606606 610636 0.502786 - . ID=CGI_10028261; scaffold1526 WUBlastX DNA_TcMar-Tc2 89085 89255 52 - . . scaffold1526 GLEAN mRNA 83330 93705 0.632332 - . ID=CGI_10006187; scaffold1788 WUBlastX LINE_Rex-Babar 17721 17987 49 + . . scaffold1788 GLEAN mRNA 1232 23874 0.618655 + . ID=CGI_10019910; scaffold633 WUBlastX LINE_L1-Tx1 19991 21067 158 + . . scaffold633 GLEAN mRNA 18015 46855 0.77454 - . ID=CGI_10004268; scaffold847 WUBlastX LINE_L1-Tx1 707577 707807 89 - . . scaffold847 GLEAN mRNA 701746 708200 0.916724 - . ID=CGI_10022288; scaffold1054 WUBlastX DNA_Kolobok 332074 332523 62 + . . scaffold1054 GLEAN mRNA 331138 333504 0.999415 + . ID=CGI_10012969; scaffold1253 WUBlastX LTR_Gypsy 41178 41243 29 + . . scaffold1253 GLEAN mRNA 16186 44891 0.331456 + . ID=CGI_10004818; scaffold1546 WUBlastX DNA_Kolobok 184454 184582 70 - . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold1277 WUBlastX LINE_RTE-X 82874 83008 59 + . . scaffold1277 GLEAN mRNA 76656 92744 0.765999 - . ID=CGI_10008022; scaffold1574 WUBlastX LINE_RTE-X 456630 457619 334 - . . scaffold1574 GLEAN mRNA 452128 459537 0.999957 + . ID=CGI_10016335; scaffold1188 WUBlastX LINE_L1-Tx1 173931 175250 183 + . . scaffold1188 GLEAN mRNA 159311 176924 0.555609 - . ID=CGI_10025460; scaffold425 WUBlastX DNA_Kolobok-IS4 136709 137503 187 + . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold191 WUBlastX DNA_Kolobok 206517 206717 76 - . . scaffold191 GLEAN mRNA 205783 209379 0.997333 - . ID=CGI_10022416; scaffold42648 WUBlastX LTR_Gypsy-Cigr 168725 169135 236 - . . scaffold42648 GLEAN mRNA 167771 174774 0.98388 - . ID=CGI_10007395; scaffold34106 WUBlastX LTR_DIRS 13417 14337 485 + . . scaffold34106 GLEAN mRNA 1207 14937 0.504518 - . ID=CGI_10001211; scaffold853 WUBlastX LINE_L2 431402 432679 631 - . . scaffold853 GLEAN mRNA 427674 436320 0.99996 - . ID=CGI_10017516; scaffold1004 WUBlastX LINE_RTE-BovB 485553 486074 99 - . . scaffold1004 GLEAN mRNA 463295 491476 0.997732 - . ID=CGI_10020781; scaffold1004 WUBlastX LINE_RTE-BovB 486256 487689 513 - . . scaffold1004 GLEAN mRNA 463295 491476 0.997732 - . ID=CGI_10020781; scaffold38934 WUBlastX DNA_Kolobok 46366 47082 411 - . . scaffold38934 GLEAN mRNA 26982 47955 0.375661 + . ID=CGI_10003097; scaffold1806 WUBlastX LTR_Gypsy 84677 86050 509 - . . scaffold1806 GLEAN mRNA 70668 89122 0.54485 - . ID=CGI_10006158; scaffold481 WUBlastX LTR_Gypsy 1227733 1227825 62 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold719 WUBlastX LTR_Pao 352022 352354 70 + . . scaffold719 GLEAN mRNA 352016 396683 0.96406 + . ID=CGI_10016008; scaffold576 WUBlastX DNA_hAT 317774 317989 60 - . . scaffold576 GLEAN mRNA 315203 324696 0.999395 - . ID=CGI_10018773; scaffold506 WUBlastX LINE_CR1 563794 563909 79 + . . scaffold506 GLEAN mRNA 555361 563909 0.886004 + . ID=CGI_10019282; scaffold192 WUBlastX LTR_Gypsy 665028 665255 72 + . . scaffold192 GLEAN mRNA 655198 676504 0.999922 - . ID=CGI_10023723; scaffold41766 WUBlastX LTR_Gypsy 32174 32359 61 - . . scaffold41766 GLEAN mRNA 24624 37050 0.752559 - . ID=CGI_10005601; scaffold412 WUBlastX LTR_Ngaro 124922 125329 45 + . . scaffold412 GLEAN mRNA 49163 134272 0.261275 - . ID=CGI_10018559; scaffold43552 WUBlastX LTR_Gypsy 225974 226159 22 - . . scaffold43552 GLEAN mRNA 204428 227902 0.829194 - . ID=CGI_10011023; scaffold1794 WUBlastX LINE_Penelope 591347 591451 81 + . . scaffold1794 GLEAN mRNA 591161 591451 0.999372 - . ID=CGI_10019600; scaffold86 WUBlastX DNA_Sola 577054 577470 29 + . . scaffold86 GLEAN mRNA 577054 579340 0.999999 + . ID=CGI_10028160; scaffold102 WUBlastX DNA_TcMar-Tc2 257608 257847 47 - . . scaffold102 GLEAN mRNA 251987 267295 0.910885 - . ID=CGI_10028430; scaffold1157 WUBlastX LINE_CR1 228982 229176 80 - . . scaffold1157 GLEAN mRNA 212503 240416 0.462871 - . ID=CGI_10011221; scaffold40828 WUBlastX LTR_Gypsy 57920 58102 25 - . . scaffold40828 GLEAN mRNA 28348 61048 0.605765 + . ID=CGI_10004502; scaffold41344 WUBlastX LINE_L1 6009 6085 54 + . . scaffold41344 GLEAN mRNA 5867 6085 0.733461 + . ID=CGI_10004977; scaffold535 WUBlastX LTR_Copia 556185 556580 22 + . . scaffold535 GLEAN mRNA 556071 562996 0.477113 + . ID=CGI_10020299; scaffold885 WUBlastX LTR_DIRS 1017448 1017633 55 + . . scaffold885 GLEAN mRNA 1005329 1048267 0.991835 - . ID=CGI_10025234; scaffold602 WUBlastX DNA_Harbinger 613031 613201 78 + . . scaffold602 GLEAN mRNA 583910 615175 0.1397 + . ID=CGI_10023196; C34270 WUBlastX DNA_hAT-Blackja 8183 8503 55 + . . C34270 GLEAN mRNA 1937 17133 0.990126 - . ID=CGI_10001262; scaffold42408 WUBlastX LINE_L1 112656 113069 54 + . . scaffold42408 GLEAN mRNA 111494 115012 0.832978 - . ID=CGI_10006751; scaffold115 WUBlastX LINE_L1 130639 131175 65 - . . scaffold115 GLEAN mRNA 126783 131612 1 - . ID=CGI_10021378; scaffold70 WUBlastX LINE_RTE-X 515356 515493 29 - . . scaffold70 GLEAN mRNA 505766 521255 0.349382 + . ID=CGI_10024775; scaffold70 WUBlastX LINE_RTE-X 515356 515493 29 - . . scaffold70 GLEAN mRNA 501356 529120 0.998611 - . ID=CGI_10024774; scaffold70 WUBlastX LINE_RTE-X 515656 515790 48 - . . scaffold70 GLEAN mRNA 505766 521255 0.349382 + . ID=CGI_10024775; scaffold70 WUBlastX LINE_RTE-X 515656 515790 48 - . . scaffold70 GLEAN mRNA 501356 529120 0.998611 - . ID=CGI_10024774; scaffold113 WUBlastX LTR_Ngaro 116906 117685 20 + . . scaffold113 GLEAN mRNA 112752 117970 0.458528 + . ID=CGI_10021286; scaffold499 WUBlastX LINE_L2-Hydra 101065 102165 26 - . . scaffold499 GLEAN mRNA 88831 107103 0.615404 + . ID=CGI_10015763; scaffold1024 WUBlastX DNA_hAT-Hobo 135326 135408 20 + . . scaffold1024 GLEAN mRNA 124695 135408 0.992138 - . ID=CGI_10028523; scaffold22 WUBlastX DNA_TcMar-Marin 90567 90803 69 + . . scaffold22 GLEAN mRNA 89502 123774 0.856288 - . ID=CGI_10028828; scaffold780 WUBlastX LINE_RTE-X 229655 229840 74 + . . scaffold780 GLEAN mRNA 205875 237446 0.523885 + . ID=CGI_10024723; scaffold780 WUBlastX LINE_RTE-X 232423 232608 74 + . . scaffold780 GLEAN mRNA 205875 237446 0.523885 + . ID=CGI_10024723; scaffold569 WUBlastX LINE_RTE-X 113299 113475 54 + . . scaffold569 GLEAN mRNA 93334 114910 0.803638 - . ID=CGI_10009496; scaffold40080 WUBlastX LINE_RTE-BovB 24514 25059 68 + . . scaffold40080 GLEAN mRNA 23516 25927 0.997813 - . ID=CGI_10003844; scaffold43076 WUBlastX LTR_Copia 187757 187885 29 - . . scaffold43076 GLEAN mRNA 177922 191367 0.98946 - . ID=CGI_10008769; scaffold43076 WUBlastX LTR_Copia 187757 187885 29 - . . scaffold43076 GLEAN mRNA 186716 211039 0.795025 + . ID=CGI_10008770; scaffold1262 WUBlastX DNA_Sola 69957 70133 112 + . . scaffold1262 GLEAN mRNA 67104 77376 1 - . ID=CGI_10018928; scaffold204 WUBlastX LINE_L1-Tx1 638346 638654 59 - . . scaffold204 GLEAN mRNA 632848 639424 1 + . ID=CGI_10026121; scaffold730 WUBlastX LINE_RTE-X 267198 267452 61 - . . scaffold730 GLEAN mRNA 262816 271880 0.998589 - . ID=CGI_10019892; scaffold36410 WUBlastX RC_Helitron 14880 15173 75 + . . scaffold36410 GLEAN mRNA 4689 21980 0.354487 - . ID=CGI_10001887; scaffold867 WUBlastX LINE_L1 254362 254490 64 + . . scaffold867 GLEAN mRNA 253182 264678 0.938203 - . ID=CGI_10026215; scaffold586 WUBlastX LINE_RTE-X 178005 178151 101 - . . scaffold586 GLEAN mRNA 158543 182219 0.249413 - . ID=CGI_10018000; scaffold1132 WUBlastX DNA_TcMar-Tc1 210320 210826 74 + . . scaffold1132 GLEAN mRNA 207782 231438 0.973884 - . ID=CGI_10023314; scaffold1826 WUBlastX LTR_Gypsy 40861 41163 72 + . . scaffold1826 GLEAN mRNA 39665 57424 0.756838 + . ID=CGI_10006241; scaffold35014 WUBlastX DNA_PiggyBac 15397 15465 48 + . . scaffold35014 GLEAN mRNA 9316 21495 0.996281 + . ID=CGI_10001389; scaffold117 WUBlastX LINE_CR1 53134 53319 45 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold1866 WUBlastX LINE_CR1-L2 221201 221419 133 - . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold40836 WUBlastX LINE_I 87916 88005 32 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold12 WUBlastX LTR_Gypsy 336484 336567 22 + . . scaffold12 GLEAN mRNA 326477 354530 0.999321 + . ID=CGI_10018042; scaffold633 WUBlastX LINE_L2 56924 57457 134 + . . scaffold633 GLEAN mRNA 49171 62840 0.82948 + . ID=CGI_10004269; scaffold733 WUBlastX DNA_Kolobok 377953 378198 145 - . . scaffold733 GLEAN mRNA 372581 407469 0.843432 + . ID=CGI_10025875; scaffold1093 WUBlastX LINE_Penelope 404667 404882 58 - . . scaffold1093 GLEAN mRNA 404049 410721 0.987785 + . ID=CGI_10019807; scaffold36202 WUBlastX LTR_Ngaro 20871 21449 71 - . . scaffold36202 GLEAN mRNA 3245 23503 0.999232 + . ID=CGI_10001812; scaffold1222 WUBlastX LINE_RTE-X 136789 136980 165 - . . scaffold1222 GLEAN mRNA 134214 152280 0.999999 + . ID=CGI_10016238; scaffold976 WUBlastX LTR_Gypsy 54923 55180 43 + . . scaffold976 GLEAN mRNA 40652 60127 0.884558 - . ID=CGI_10014002; scaffold54 WUBlastX DNA_Sola 668716 668856 33 + . . scaffold54 GLEAN mRNA 665380 671765 0.174144 + . ID=CGI_10023688; scaffold54 WUBlastX DNA_Sola 669714 669866 35 + . . scaffold54 GLEAN mRNA 665380 671765 0.174144 + . ID=CGI_10023688; scaffold54 WUBlastX DNA_Sola 670780 671223 115 + . . scaffold54 GLEAN mRNA 665380 671765 0.174144 + . ID=CGI_10023688; scaffold1067 WUBlastX DNA_En-Spm 98805 99824 98 + . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold1362 WUBlastX RC_Helitron 501855 502067 177 - . . scaffold1362 GLEAN mRNA 501660 502067 1 - . ID=CGI_10023944; scaffold580 WUBlastX LTR_Gypsy-Troyk 545642 547507 1229 + . . scaffold580 GLEAN mRNA 534985 547949 0.999377 + . ID=CGI_10020515; scaffold580 WUBlastX LTR_Gypsy-Troyk 547530 547856 32 + . . scaffold580 GLEAN mRNA 534985 547949 0.999377 + . ID=CGI_10020515; scaffold1894 WUBlastX LINE_L1-Tx1 318567 318827 25 - . . scaffold1894 GLEAN mRNA 303181 340585 0.788071 + . ID=CGI_10013342; scaffold1894 WUBlastX LINE_L1-Tx1 318833 319354 128 - . . scaffold1894 GLEAN mRNA 303181 340585 0.788071 + . ID=CGI_10013342; scaffold933 WUBlastX LINE_L1 321833 322237 117 + . . scaffold933 GLEAN mRNA 320919 329030 0.990126 + . ID=CGI_10016722; scaffold1097 WUBlastX LINE_RTE-X 717740 718000 102 - . . scaffold1097 GLEAN mRNA 684510 718767 0.99504 - . ID=CGI_10024542; scaffold1097 WUBlastX LINE_RTE-X 718009 718314 105 - . . scaffold1097 GLEAN mRNA 684510 718767 0.99504 - . ID=CGI_10024542; scaffold42236 WUBlastX DNA_hAT 119031 119102 35 + . . scaffold42236 GLEAN mRNA 112501 136266 0.999117 + . ID=CGI_10006406; scaffold42236 WUBlastX DNA_hAT 119339 119560 160 + . . scaffold42236 GLEAN mRNA 112501 136266 0.999117 + . ID=CGI_10006406; scaffold165 WUBlastX LTR_Pao 197614 198042 153 - . . scaffold165 GLEAN mRNA 195130 200984 1 + . ID=CGI_10015323; scaffold1 WUBlastX DNA_TcMar-Tc1 252414 252653 142 - . . scaffold1 GLEAN mRNA 239740 257002 0.998426 - . ID=CGI_10013473; scaffold162 WUBlastX LINE_RTE-X 54314 55303 151 + . . scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; scaffold343 WUBlastX LINE_RTE-X 339211 339765 45 - . . scaffold343 GLEAN mRNA 339184 340140 0.999999 - . ID=CGI_10021750; scaffold1231 WUBlastX LINE_RTE-BovB 105771 105983 152 + . . scaffold1231 GLEAN mRNA 79934 107425 0.93438 + . ID=CGI_10004703; scaffold1231 WUBlastX LINE_RTE-BovB 106116 106328 74 + . . scaffold1231 GLEAN mRNA 79934 107425 0.93438 + . ID=CGI_10004703; scaffold448 WUBlastX LTR_DIRS 28731 29282 131 - . . scaffold448 GLEAN mRNA 15813 30397 0.727338 + . ID=CGI_10024928; scaffold448 WUBlastX LTR_DIRS 29356 29727 59 - . . scaffold448 GLEAN mRNA 15813 30397 0.727338 + . ID=CGI_10024928; scaffold448 WUBlastX LTR_DIRS 29861 29962 22 - . . scaffold448 GLEAN mRNA 15813 30397 0.727338 + . ID=CGI_10024928; scaffold1789 WUBlastX DNA_Kolobok 15280 15531 43 + . . scaffold1789 GLEAN mRNA 10291 23583 0.974284 + . ID=CGI_10003175; scaffold790 WUBlastX LINE_L2 240489 240740 50 - . . scaffold790 GLEAN mRNA 239122 257283 0.83657 + . ID=CGI_10013172; scaffold168 WUBlastX LINE_L2 586906 587757 186 - . . scaffold168 GLEAN mRNA 580127 599947 0.430988 + . ID=CGI_10025600; scaffold26 WUBlastX LTR_Gypsy 38442 38723 279 - . . scaffold26 GLEAN mRNA 37184 39443 0.783788 + . ID=CGI_10002298; scaffold3 WUBlastX LTR_Ngaro 972496 973029 139 - . . scaffold3 GLEAN mRNA 958982 982969 0.663393 + . ID=CGI_10027317; scaffold1583 WUBlastX LINE_RTE-X 330196 330585 99 + . . scaffold1583 GLEAN mRNA 329253 340870 0.998703 - . ID=CGI_10025825; scaffold1896 WUBlastX LTR_Ngaro 485453 485989 175 + . . scaffold1896 GLEAN mRNA 482993 491454 0.999947 + . ID=CGI_10019652; scaffold165 WUBlastX LTR_Pao 198867 198983 28 - . . scaffold165 GLEAN mRNA 195130 200984 1 + . ID=CGI_10015323; scaffold1174 WUBlastX DNA_IS4EU 929658 930080 44 - . . scaffold1174 GLEAN mRNA 917037 939462 0.964473 + . ID=CGI_10026072; scaffold77 WUBlastX DNA_TcMar-Tigge 96791 96928 40 - . . scaffold77 GLEAN mRNA 92627 103108 0.416789 - . ID=CGI_10027966; scaffold39196 WUBlastX LTR_Gypsy 22444 24036 1043 + . . scaffold39196 GLEAN mRNA 20999 26289 0.999968 + . ID=CGI_10003216; scaffold39196 WUBlastX LTR_Gypsy 22444 24036 1043 + . . scaffold39196 GLEAN mRNA 18014 59804 0.5589 - . ID=CGI_10003215; scaffold39196 WUBlastX LTR_Gypsy 24003 25796 1285 + . . scaffold39196 GLEAN mRNA 20999 26289 0.999968 + . ID=CGI_10003216; scaffold39196 WUBlastX LTR_Gypsy 24003 25796 1285 + . . scaffold39196 GLEAN mRNA 18014 59804 0.5589 - . ID=CGI_10003215; scaffold1382 WUBlastX LINE_RTE-X 138692 139549 248 + . . scaffold1382 GLEAN mRNA 113082 142955 0.812933 - . ID=CGI_10011173; scaffold1625 WUBlastX LINE_RTE-X 170191 170367 20 - . . scaffold1625 GLEAN mRNA 163230 175754 0.999993 - . ID=CGI_10007533; scaffold146 WUBlastX LINE_L1-Tx1 624937 625695 152 - . . scaffold146 GLEAN mRNA 617556 637446 0.912862 - . ID=CGI_10024915; scaffold578 WUBlastX DNA_Kolobok 23722 23895 84 - . . scaffold578 GLEAN mRNA 19761 26602 0.244564 - . ID=CGI_10015109; scaffold1179 WUBlastX LINE_L1 1212986 1213156 71 + . . scaffold1179 GLEAN mRNA 1211321 1215235 0.457085 - . ID=CGI_10027415; scaffold1179 WUBlastX LINE_L1 1213967 1214215 51 + . . scaffold1179 GLEAN mRNA 1211321 1215235 0.457085 - . ID=CGI_10027415; scaffold37760 WUBlastX LTR_DIRS 20489 20872 244 - . . scaffold37760 GLEAN mRNA 11272 38265 0.979677 + . ID=CGI_10002466; scaffold41652 WUBlastX LINE_L1-Tx1 5653 6723 119 + . . scaffold41652 GLEAN mRNA 3816 27737 0.770849 - . ID=CGI_10005379; scaffold40264 WUBlastX LINE_CR1 49499 51058 201 - . . scaffold40264 GLEAN mRNA 10435 67637 0.512371 + . ID=CGI_10004012; scaffold1253 WUBlastX LTR_Gypsy 41190 41243 38 + . . scaffold1253 GLEAN mRNA 16186 44891 0.331456 + . ID=CGI_10004818; scaffold1727 WUBlastX DNA_hAT-hATw 37442 38917 184 + . . scaffold1727 GLEAN mRNA 27437 43036 0.635377 + . ID=CGI_10002672; scaffold41452 WUBlastX LINE_L2 62790 63128 215 + . . scaffold41452 GLEAN mRNA 56340 65838 0.524499 + . ID=CGI_10005081; scaffold210 WUBlastX LTR_Ngaro 225375 226229 258 + . . scaffold210 GLEAN mRNA 223042 231005 0.552757 + . ID=CGI_10015889; scaffold120 WUBlastX DNA_Crypton 219356 219910 117 - . . scaffold120 GLEAN mRNA 195224 226189 0.999675 - . ID=CGI_10017534; scaffold120 WUBlastX DNA_Crypton 220262 220918 244 - . . scaffold120 GLEAN mRNA 195224 226189 0.999675 - . ID=CGI_10017534; scaffold815 WUBlastX LINE_RTE-X 9479 9802 103 + . . scaffold815 GLEAN mRNA 3623 27508 0.999835 - . ID=CGI_10001932; scaffold632 WUBlastX LINE_CR1 511304 511612 40 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold41568 WUBlastX LTR_Gypsy 84989 85408 266 + . . scaffold41568 GLEAN mRNA 75182 91109 0.978007 + . ID=CGI_10005300; scaffold41568 WUBlastX LTR_Gypsy 85441 85632 98 + . . scaffold41568 GLEAN mRNA 75182 91109 0.978007 + . ID=CGI_10005300; scaffold41568 WUBlastX LTR_Gypsy 85661 85885 50 + . . scaffold41568 GLEAN mRNA 75182 91109 0.978007 + . ID=CGI_10005300; scaffold409 WUBlastX DNA_TcMar-Marin 60454 60624 74 + . . scaffold409 GLEAN mRNA 51142 66968 0.990811 + . ID=CGI_10004317; scaffold847 WUBlastX RC_Helitron 438746 438952 131 - . . scaffold847 GLEAN mRNA 435807 447835 0.572478 + . ID=CGI_10022278; C29438 WUBlastX LINE_RTE-X 3631 4029 182 + . . C29438 GLEAN mRNA 533 5889 1 + . ID=CGI_10000534; scaffold99 WUBlastX LINE_L2 32079 32372 175 - . . scaffold99 GLEAN mRNA 22545 38354 0.404855 + . ID=CGI_10021189; scaffold1464 WUBlastX LTR_Gypsy 2378 2596 88 + . . scaffold1464 GLEAN mRNA 1479 25035 0.549445 + . ID=CGI_10003234; scaffold33082 WUBlastX LINE_RTE-X 6219 6572 85 - . . scaffold33082 GLEAN mRNA 1046 12947 0.584166 + . ID=CGI_10000988; scaffold288 WUBlastX DNA_TcMar-Tc1 158671 159126 262 - . . scaffold288 GLEAN mRNA 144555 164915 0.948447 + . ID=CGI_10020659; scaffold288 WUBlastX DNA_TcMar-Tc1 159110 159565 195 - . . scaffold288 GLEAN mRNA 144555 164915 0.948447 + . ID=CGI_10020659; scaffold35438 WUBlastX LINE_L1 11535 12023 46 - . . scaffold35438 GLEAN mRNA 3327 22372 0.999028 - . ID=CGI_10001514; scaffold1402 WUBlastX LINE_CR1 342024 342188 74 + . . scaffold1402 GLEAN mRNA 333924 347546 0.999947 - . ID=CGI_10017589; scaffold150 WUBlastX LTR_DIRS 1353824 1354636 369 - . . scaffold150 GLEAN mRNA 1351630 1358824 0.998084 - . ID=CGI_10028676; scaffold150 WUBlastX LTR_DIRS 1354612 1355247 275 - . . scaffold150 GLEAN mRNA 1351630 1358824 0.998084 - . ID=CGI_10028676; scaffold77 WUBlastX DNA_TcMar-Pogo 95306 96658 741 - . . scaffold77 GLEAN mRNA 92627 103108 0.416789 - . ID=CGI_10027966; scaffold1589 WUBlastX LTR_Gypsy-Cigr 594935 595033 51 + . . scaffold1589 GLEAN mRNA 592118 603104 0.965132 - . ID=CGI_10024122; scaffold41568 WUBlastX LTR_Gypsy 86124 86213 29 + . . scaffold41568 GLEAN mRNA 75182 91109 0.978007 + . ID=CGI_10005300; scaffold42570 WUBlastX LINE_CR1 15287 15418 29 + . . scaffold42570 GLEAN mRNA 8098 32477 0.949085 + . ID=CGI_10007233; scaffold890 WUBlastX LINE_L2 290577 290780 52 - . . scaffold890 GLEAN mRNA 287435 312343 0.999997 - . ID=CGI_10014480; scaffold22 WUBlastX DNA_MuDR 1316335 1316706 56 + . . scaffold22 GLEAN mRNA 1296873 1324907 0.541396 + . ID=CGI_10028906; scaffold1836 WUBlastX LTR_Gypsy 715537 715650 81 + . . scaffold1836 GLEAN mRNA 712795 721764 0.843575 + . ID=CGI_10026300; scaffold90 WUBlastX DNA_Harbinger 256713 256862 74 + . . scaffold90 GLEAN mRNA 256704 258219 0.982419 + . ID=CGI_10015169; scaffold42790 WUBlastX DNA_Harbinger 184363 184527 58 - . . scaffold42790 GLEAN mRNA 181485 188091 0.999947 - . ID=CGI_10007719; scaffold1750 WUBlastX DNA_Harbinger 686277 686450 48 - . . scaffold1750 GLEAN mRNA 679453 687752 0.873959 - . ID=CGI_10021501; scaffold39268 WUBlastX DNA_Harbinger 45842 46000 71 - . . scaffold39268 GLEAN mRNA 37983 58849 0.736622 - . ID=CGI_10003275; scaffold1255 WUBlastX RC_Helitron 211554 211826 31 - . . scaffold1255 GLEAN mRNA 211548 212816 0.999998 - . ID=CGI_10018068; scaffold1562 WUBlastX DNA_TcMar-Marin 105859 106077 48 - . . scaffold1562 GLEAN mRNA 73157 112953 0.997511 - . ID=CGI_10005776; scaffold1061 WUBlastX LTR_Caulimoviru 252992 253768 34 - . . scaffold1061 GLEAN mRNA 252587 259902 0.757948 - . ID=CGI_10017252; scaffold1061 WUBlastX LTR_Caulimoviru 252992 253768 34 - . . scaffold1061 GLEAN mRNA 244234 289069 0.85922 + . ID=CGI_10017251; scaffold4 WUBlastX LINE_RTE-X 53470 53664 37 - . . scaffold4 GLEAN mRNA 42612 56029 0.999937 + . ID=CGI_10021161; scaffold1377 WUBlastX LTR_DIRS 8057 8824 35 - . . scaffold1377 GLEAN mRNA 4634 19279 0.99195 + . ID=CGI_10008617; scaffold352 WUBlastX LINE_CR1-L2 157738 157890 42 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold43182 WUBlastX LTR_Ngaro 98620 98982 62 - . . scaffold43182 GLEAN mRNA 97443 102816 0.800679 + . ID=CGI_10009200; scaffold43076 WUBlastX DNA_IS4EU 124379 124456 56 + . . scaffold43076 GLEAN mRNA 124379 125530 0.999606 + . ID=CGI_10008765; scaffold43076 WUBlastX DNA_IS4EU 124647 124808 27 + . . scaffold43076 GLEAN mRNA 124379 125530 0.999606 + . ID=CGI_10008765; scaffold313 WUBlastX LINE_L1-Tx1 1019050 1019100 20 - . . scaffold313 GLEAN mRNA 1014206 1026476 0.354197 - . ID=CGI_10026633; scaffold493 WUBlastX LINE_RTE-X 36106 36345 44 + . . scaffold493 GLEAN mRNA 33582 40988 0.999595 + . ID=CGI_10007246; scaffold575 WUBlastX DNA_Sola 159454 159531 41 - . . scaffold575 GLEAN mRNA 145353 162107 0.486824 - . ID=CGI_10007002; scaffold533 WUBlastX LINE_L1-Tx1 98266 98493 44 - . . scaffold533 GLEAN mRNA 82717 99405 0.998409 - . ID=CGI_10005555; scaffold1286 WUBlastX DNA_TcMar-Tc2 31515 31649 71 - . . scaffold1286 GLEAN mRNA 25687 35466 0.660843 + . ID=CGI_10009508; scaffold496 WUBlastX DNA_hAT 266395 266652 73 + . . scaffold496 GLEAN mRNA 181480 266652 0.248463 - . ID=CGI_10022448; scaffold496 WUBlastX DNA_hAT 266395 266859 73 + . . scaffold496 GLEAN mRNA 250677 267390 0.749037 + . ID=CGI_10022449; scaffold222 WUBlastX DNA_Crypton 140198 140767 75 - . . scaffold222 GLEAN mRNA 134195 141016 0.626444 - . ID=CGI_10007124; scaffold1670 WUBlastX LINE_L2 399500 399838 44 + . . scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; scaffold1097 WUBlastX LINE_RTE-X 796933 797088 26 + . . scaffold1097 GLEAN mRNA 796138 800546 1 + . ID=CGI_10024550; scaffold321 WUBlastX LINE_RTE-X 476993 477397 42 - . . scaffold321 GLEAN mRNA 474717 485753 0.439448 - . ID=CGI_10020812; scaffold1849 WUBlastX LTR_Gypsy 132893 133384 57 - . . scaffold1849 GLEAN mRNA 132203 140711 0.7781 + . ID=CGI_10015917; scaffold1575 WUBlastX RC_Helitron 75707 75988 117 + . . scaffold1575 GLEAN mRNA 73929 76913 0.544627 + . ID=CGI_10004721; scaffold780 WUBlastX LINE_RTE-X 229607 229846 50 + . . scaffold780 GLEAN mRNA 205875 237446 0.523885 + . ID=CGI_10024723; scaffold780 WUBlastX LINE_RTE-X 232375 232614 50 + . . scaffold780 GLEAN mRNA 205875 237446 0.523885 + . ID=CGI_10024723; scaffold377 WUBlastX LINE_L1-Tx1 144775 144953 24 + . . scaffold377 GLEAN mRNA 140445 144953 0.80154 - . ID=CGI_10019404; scaffold1267 WUBlastX DNA_TcMar-Tc2 873129 873485 101 - . . scaffold1267 GLEAN mRNA 864385 877176 0.648545 - . ID=CGI_10025174; scaffold392 WUBlastX DNA_Kolobok 46396 46590 28 + . . scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; scaffold22 WUBlastX DNA_NOF 1318312 1318968 52 + . . scaffold22 GLEAN mRNA 1296873 1324907 0.541396 + . ID=CGI_10028906; scaffold1180 WUBlastX LTR_DIRS 25727 25783 40 + . . scaffold1180 GLEAN mRNA 13672 45655 0.485788 + . ID=CGI_10005979; scaffold97 WUBlastX DNA_IS4EU 88684 88803 21 + . . scaffold97 GLEAN mRNA 72894 92330 0.60683 - . ID=CGI_10005686; scaffold42766 WUBlastX DNA_hAT-Charlie 4016 5185 33 - . . scaffold42766 GLEAN mRNA 582 5602 0.982593 - . ID=CGI_10007660; scaffold1578 WUBlastX LINE_L1-Tx1 63793 64236 91 - . . scaffold1578 GLEAN mRNA 44226 72498 0.998909 - . ID=CGI_10008160; scaffold1106 WUBlastX LINE_L1-Tx1 13929 14030 34 - . . scaffold1106 GLEAN mRNA 13450 22985 0.482682 + . ID=CGI_10002425; scaffold794 WUBlastX LTR_Gypsy 281499 282110 83 + . . scaffold794 GLEAN mRNA 271227 282643 0.491343 - . ID=CGI_10017153; scaffold911 WUBlastX DNA_hAT-Tip100 108812 109015 27 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold211 WUBlastX LINE_RTE-X 986498 986995 51 + . . scaffold211 GLEAN mRNA 978840 989319 0.74015 + . ID=CGI_10026972; scaffold37712 WUBlastX LTR_Gypsy 36136 36333 82 + . . scaffold37712 GLEAN mRNA 15194 37462 0.403354 - . ID=CGI_10002463; scaffold41954 WUBlastX LINE_L1 101975 102082 25 - . . scaffold41954 GLEAN mRNA 93049 113682 0.989895 + . ID=CGI_10005853; scaffold358 WUBlastX LINE_RTE-X 137549 137704 40 + . . scaffold358 GLEAN mRNA 127311 138997 0.861912 - . ID=CGI_10013024; scaffold143 WUBlastX LINE_L1-Tx1 182843 185035 872 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold211 WUBlastX LINE_RTE-BovB 704072 704149 21 + . . scaffold211 GLEAN mRNA 691120 715917 0.0754063 + . ID=CGI_10026960; scaffold54 WUBlastX LTR_Gypsy-Cigr 83087 83428 115 + . . scaffold54 GLEAN mRNA 79485 84388 0.939929 + . ID=CGI_10023654; scaffold1785 WUBlastX LINE_L1 20431 20874 151 + . . scaffold1785 GLEAN mRNA 6322 29997 0.294917 - . ID=CGI_10024349; scaffold334 WUBlastX LINE_RTE-X 343414 343836 132 + . . scaffold334 GLEAN mRNA 333257 357250 0.999478 + . ID=CGI_10025933; scaffold143 WUBlastX LINE_L1-Tx1 190279 190581 162 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold504 WUBlastX LINE_L2 253968 254294 91 - . . scaffold504 GLEAN mRNA 245472 293737 0.367349 + . ID=CGI_10016028; scaffold504 WUBlastX LINE_L2 254354 256138 1108 - . . scaffold504 GLEAN mRNA 245472 293737 0.367349 + . ID=CGI_10016028; scaffold1123 WUBlastX LINE_RTE-BovB 14905 15474 54 + . . scaffold1123 GLEAN mRNA 4950 19691 0.554793 + . ID=CGI_10018729; scaffold79 WUBlastX LINE_L1-Tx1 886641 887588 20 - . . scaffold79 GLEAN mRNA 880710 892247 1 + . ID=CGI_10024653; scaffold695 WUBlastX DNA_Sola 240416 240517 34 - . . scaffold695 GLEAN mRNA 240354 243330 0.990093 - . ID=CGI_10023276; scaffold1373 WUBlastX LINE_RTE-X 1297 2019 107 + . . scaffold1373 GLEAN mRNA 600 7221 1 - . ID=CGI_10007903; scaffold942 WUBlastX DNA_TcMar-Tc1 396847 397074 87 + . . scaffold942 GLEAN mRNA 390660 406366 0.734087 - . ID=CGI_10019170; scaffold165 WUBlastX LTR_Gypsy 112520 113827 971 + . . scaffold165 GLEAN mRNA 100697 128503 0.998921 + . ID=CGI_10015315; scaffold42648 WUBlastX LTR_Gypsy 168626 169135 98 - . . scaffold42648 GLEAN mRNA 167771 174774 0.98388 - . ID=CGI_10007395; scaffold772 WUBlastX DNA_PiggyBac 281926 282408 93 + . . scaffold772 GLEAN mRNA 277746 285976 1 + . ID=CGI_10016590; scaffold1898 WUBlastX LTR_Pao 311606 311746 127 - . . scaffold1898 GLEAN mRNA 306186 312813 0.889712 + . ID=CGI_10012220; scaffold596 WUBlastX DNA_TcMar-Tc1 213767 214351 156 - . . scaffold596 GLEAN mRNA 209515 220415 0.999343 + . ID=CGI_10009578; scaffold1512 WUBlastX LTR_Gypsy 109814 109969 25 - . . scaffold1512 GLEAN mRNA 103804 112617 0.999842 - . ID=CGI_10019851; scaffold1429 WUBlastX DNA_IS4EU 14565 15194 234 - . . scaffold1429 GLEAN mRNA 13458 17611 0.727726 + . ID=CGI_10001355; C30458 WUBlastX LINE_L1 5525 5845 96 + . . C30458 GLEAN mRNA 986 6010 1 - . ID=CGI_10000625; scaffold1249 WUBlastX LINE_RTE-X 129970 130338 106 + . . scaffold1249 GLEAN mRNA 124551 131714 0.558382 + . ID=CGI_10019051; scaffold550 WUBlastX LTR_Gypsy 195197 195304 24 - . . scaffold550 GLEAN mRNA 192301 204322 0.634785 + . ID=CGI_10012493; scaffold22 WUBlastX LINE_L1-Tx1 271306 272304 179 + . . scaffold22 GLEAN mRNA 264482 280480 0.644868 - . ID=CGI_10028838; scaffold39212 WUBlastX DNA_Sola 46480 47265 76 - . . scaffold39212 GLEAN mRNA 30679 56961 0.415387 - . ID=CGI_10003233; scaffold37740 WUBlastX DNA_NOF 11054 11374 251 - . . scaffold37740 GLEAN mRNA 280 12182 0.630216 - . ID=CGI_10002468; scaffold37740 WUBlastX DNA_NOF 12057 12155 34 - . . scaffold37740 GLEAN mRNA 280 12182 0.630216 - . ID=CGI_10002468; scaffold41816 WUBlastX LINE_RTE-X 86557 86922 154 - . . scaffold41816 GLEAN mRNA 84334 89370 0.999542 + . ID=CGI_10005649; scaffold1174 WUBlastX DNA_Harbinger 979421 979681 145 - . . scaffold1174 GLEAN mRNA 969973 990165 0.301625 + . ID=CGI_10026076; scaffold292 WUBlastX LTR_Pao 17968 18999 370 - . . scaffold292 GLEAN mRNA 5287 26747 0.497399 + . ID=CGI_10003526; scaffold501 WUBlastX LTR_Gypsy 724362 724787 47 + . . scaffold501 GLEAN mRNA 690007 761178 0.748134 - . ID=CGI_10027530; scaffold36790 WUBlastX LTR_Ngaro 26094 26501 198 + . . scaffold36790 GLEAN mRNA 14645 35591 0.936014 - . ID=CGI_10002141; scaffold751 WUBlastX DNA_IS4EU 95933 96994 363 + . . scaffold751 GLEAN mRNA 94947 97024 0.999415 + . ID=CGI_10017382; scaffold343 WUBlastX LINE_RTE-BovB 647014 647877 354 - . . scaffold343 GLEAN mRNA 643828 662585 1 - . ID=CGI_10021771; scaffold343 WUBlastX LINE_RTE-BovB 647891 648127 99 - . . scaffold343 GLEAN mRNA 643828 662585 1 - . ID=CGI_10021771; scaffold1154 WUBlastX LTR_DIRS 328523 329119 208 + . . scaffold1154 GLEAN mRNA 300263 342126 0.0862783 - . ID=CGI_10026162; scaffold343 WUBlastX LINE_RTE-X 339295 340140 430 - . . scaffold343 GLEAN mRNA 339184 340140 0.999999 - . ID=CGI_10021750; scaffold39972 WUBlastX LINE_L1 40444 41259 409 + . . scaffold39972 GLEAN mRNA 35765 49275 0.995966 + . ID=CGI_10003708; scaffold39972 WUBlastX LINE_L1 42046 42297 29 + . . scaffold39972 GLEAN mRNA 35765 49275 0.995966 + . ID=CGI_10003708; scaffold632 WUBlastX LINE_CR1-L2 511602 511799 98 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold41954 WUBlastX LINE_RTE-X 130736 130936 122 - . . scaffold41954 GLEAN mRNA 128673 136852 1 + . ID=CGI_10005855; scaffold1900 WUBlastX LINE_L1-Tx1 391200 391724 286 + . . scaffold1900 GLEAN mRNA 384856 401407 0.999777 - . ID=CGI_10017347; scaffold1900 WUBlastX LINE_L1-Tx1 391739 393091 233 + . . scaffold1900 GLEAN mRNA 384856 401407 0.999777 - . ID=CGI_10017347; scaffold509 WUBlastX LINE_L1-Tx1 256043 256222 59 + . . scaffold509 GLEAN mRNA 253981 269937 0.999344 + . ID=CGI_10018647; scaffold42210 WUBlastX LINE_L1-Tx1 100436 101128 161 + . . scaffold42210 GLEAN mRNA 98005 111760 0.591926 + . ID=CGI_10006389; scaffold77 WUBlastX DNA_hAT-hATw 657104 658756 651 + . . scaffold77 GLEAN mRNA 654725 664026 0.999581 + . ID=CGI_10027987; scaffold43008 WUBlastX LINE_RTE-X 2760 2891 78 + . . scaffold43008 GLEAN mRNA 2147 17942 0.982229 + . ID=CGI_10008457; scaffold43008 WUBlastX LINE_RTE-X 2896 3327 197 + . . scaffold43008 GLEAN mRNA 2147 17942 0.982229 + . ID=CGI_10008457; scaffold43008 WUBlastX LINE_RTE-X 3315 4439 55 + . . scaffold43008 GLEAN mRNA 2147 17942 0.982229 + . ID=CGI_10008457; scaffold63 WUBlastX LINE_CR1-L2 450595 450819 72 - . . scaffold63 GLEAN mRNA 449094 452628 1 + . ID=CGI_10017284; scaffold145 WUBlastX LINE_L2 834833 835276 33 - . . scaffold145 GLEAN mRNA 832787 840125 0.97533 - . ID=CGI_10026566; scaffold1741 WUBlastX LTR_Gypsy 144116 144502 78 + . . scaffold1741 GLEAN mRNA 144116 145129 0.999285 + . ID=CGI_10024025; scaffold364 WUBlastX DNA_Crypton 354782 355231 68 + . . scaffold364 GLEAN mRNA 354713 358226 0.333666 + . ID=CGI_10022692; scaffold315 WUBlastX LINE_L2 304265 304489 77 + . . scaffold315 GLEAN mRNA 296779 330061 0.935948 + . ID=CGI_10020417; scaffold38494 WUBlastX LINE_L2 54841 55077 75 + . . scaffold38494 GLEAN mRNA 8485 55173 0.992441 + . ID=CGI_10002806; scaffold583 WUBlastX LTR_Gypsy 266361 266834 26 - . . scaffold583 GLEAN mRNA 266361 266834 0.53608 - . ID=CGI_10023615; scaffold1321 WUBlastX LTR_Gypsy 129814 130011 29 - . . scaffold1321 GLEAN mRNA 124908 130065 0.986166 - . ID=CGI_10010661; scaffold292 WUBlastX LINE_Jockey 5287 5391 28 + . . scaffold292 GLEAN mRNA 5287 26747 0.497399 + . ID=CGI_10003526; scaffold416 WUBlastX LINE_Penelope 16545 16664 88 - . . scaffold416 GLEAN mRNA 11110 24454 0.716094 - . ID=CGI_10014735; scaffold44054 WUBlastX LINE_RTE-X 307400 307654 49 - . . scaffold44054 GLEAN mRNA 306696 317315 0.999734 + . ID=CGI_10016171; scaffold223 WUBlastX LINE_RTE-BovB 232262 232567 59 + . . scaffold223 GLEAN mRNA 221696 232581 0.850648 + . ID=CGI_10012918; scaffold1570 WUBlastX DNA_PiggyBac 14565 14747 42 + . . scaffold1570 GLEAN mRNA 10930 17344 0.990546 + . ID=CGI_10002599; scaffold581 WUBlastX DNA_Sola 188844 189065 78 - . . scaffold581 GLEAN mRNA 181853 194211 0.517038 - . ID=CGI_10013740; scaffold934 WUBlastX RC_Helitron 271497 271604 45 + . . scaffold934 GLEAN mRNA 262254 282098 1 - . ID=CGI_10015446; scaffold1352 WUBlastX LINE_L2 401497 401757 75 + . . scaffold1352 GLEAN mRNA 400458 408667 0.333165 + . ID=CGI_10018425; C25496 WUBlastX LINE_CR1 2006 2074 27 + . . C25496 GLEAN mRNA 1853 2074 0.998748 + . ID=CGI_10000243; scaffold1653 WUBlastX DNA_TcMar-ISRm1 29753 29953 97 - . . scaffold1653 GLEAN mRNA 29747 39764 0.980452 - . ID=CGI_10002252; scaffold1322 WUBlastX LTR_Gypsy 269916 270824 47 + . . scaffold1322 GLEAN mRNA 265135 302274 0.499623 + . ID=CGI_10019472; scaffold1188 WUBlastX LTR_Gypsy 205588 205800 76 - . . scaffold1188 GLEAN mRNA 201691 209926 0.974251 - . ID=CGI_10025462; C35840 WUBlastX DNA_Harbinger 3715 3924 29 - . . C35840 GLEAN mRNA 655 3933 0.500738 - . ID=CGI_10001630; scaffold191 WUBlastX LINE_Penelope 578145 578312 67 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold1350 WUBlastX LINE_L1 207526 207780 65 - . . scaffold1350 GLEAN mRNA 200904 214641 0.523236 - . ID=CGI_10017304; scaffold1810 WUBlastX LINE_Proto2 35404 35715 88 + . . scaffold1810 GLEAN mRNA 35071 35736 0.59015 + . ID=CGI_10007557; scaffold57 WUBlastX LINE_RTE-BovB 445899 446036 47 - . . scaffold57 GLEAN mRNA 444980 452251 1 + . ID=CGI_10020561; scaffold1213 WUBlastX LINE_RTE-X 51920 52234 31 + . . scaffold1213 GLEAN mRNA 37787 69926 0.920174 - . ID=CGI_10027426; scaffold1877 WUBlastX LINE_RTE-BovB 275468 275677 45 - . . scaffold1877 GLEAN mRNA 260700 282474 0.629158 + . ID=CGI_10011961; scaffold36158 WUBlastX LINE_L1-Tx1 18432 18671 37 - . . scaffold36158 GLEAN mRNA 15216 24760 0.784797 + . ID=CGI_10001808; scaffold1473 WUBlastX LINE_L1-Tx1 15282 15560 71 - . . scaffold1473 GLEAN mRNA 13162 33966 0.99911 + . ID=CGI_10003509; scaffold1583 WUBlastX LTR_Gypsy 822207 822452 41 - . . scaffold1583 GLEAN mRNA 822207 822614 0.999365 - . ID=CGI_10025843; scaffold1825 WUBlastX LINE_CR1-L2 166811 167113 43 - . . scaffold1825 GLEAN mRNA 165468 177148 0.695303 - . ID=CGI_10011147; scaffold1834 WUBlastX LINE_L1-Tx1 42120 42260 77 + . . scaffold1834 GLEAN mRNA 40709 65850 0.846288 + . ID=CGI_10016651; scaffold1834 WUBlastX LINE_L1-Tx1 42704 42802 24 + . . scaffold1834 GLEAN mRNA 40709 65850 0.846288 + . ID=CGI_10016651; scaffold1157 WUBlastX LINE_L1-Tx1 206927 207049 20 - . . scaffold1157 GLEAN mRNA 206927 207331 0.618241 + . ID=CGI_10011219; scaffold257 WUBlastX LTR_Gypsy 1606452 1606646 31 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold789 WUBlastX LINE_R2-Hero 96646 96738 24 + . . scaffold789 GLEAN mRNA 76148 97050 0.642884 - . ID=CGI_10017181; scaffold1554 WUBlastX DNA_Kolobok-Hyd 55373 55843 44 - . . scaffold1554 GLEAN mRNA 55077 66633 0.275944 - . ID=CGI_10017356; scaffold1554 WUBlastX DNA_Kolobok-Hyd 56561 56698 30 - . . scaffold1554 GLEAN mRNA 55077 66633 0.275944 - . ID=CGI_10017356; scaffold42408 WUBlastX LINE_L1-Tx1 113084 113272 60 + . . scaffold42408 GLEAN mRNA 111494 115012 0.832978 - . ID=CGI_10006751; scaffold1221 WUBlastX DNA_PiggyBac 512102 512206 30 - . . scaffold1221 GLEAN mRNA 505287 514877 0.549954 - . ID=CGI_10019748; scaffold12 WUBlastX LTR_Gypsy 307677 307892 48 - . . scaffold12 GLEAN mRNA 290334 319375 0.793549 - . ID=CGI_10018039; scaffold226 WUBlastX LTR_DIRS 463178 463921 118 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold43146 WUBlastX DNA_Kolobok-IS4 104181 104381 97 - . . scaffold43146 GLEAN mRNA 80112 107835 0.644637 + . ID=CGI_10009042; scaffold39966 WUBlastX LTR_Gypsy 10854 10925 20 + . . scaffold39966 GLEAN mRNA 5670 20559 0.999675 + . ID=CGI_10003724; scaffold780 WUBlastX LINE_L2 149927 150487 101 - . . scaffold780 GLEAN mRNA 138989 166483 0.986281 + . ID=CGI_10024719; scaffold1024 WUBlastX DNA_PiggyBac 1080178 1080270 56 - . . scaffold1024 GLEAN mRNA 1078261 1083838 0.826098 - . ID=CGI_10028565; scaffold54 WUBlastX LINE_RTE-X 699498 699818 79 - . . scaffold54 GLEAN mRNA 691256 701357 0.651135 + . ID=CGI_10023690; scaffold1335 WUBlastX LINE_Penelope 14980 15543 75 - . . scaffold1335 GLEAN mRNA 497 21134 0.65089 + . ID=CGI_10001395; scaffold1286 WUBlastX LINE_CR1 114146 114373 99 - . . scaffold1286 GLEAN mRNA 98601 123345 0.396375 - . ID=CGI_10009514; scaffold86 WUBlastX LINE_Penelope 244297 244599 149 - . . scaffold86 GLEAN mRNA 234944 244974 0.760974 - . ID=CGI_10028144; scaffold1385 WUBlastX LINE_RTE-X 268949 269323 88 - . . scaffold1385 GLEAN mRNA 265685 273877 0.994335 - . ID=CGI_10013848; scaffold35014 WUBlastX DNA_PiggyBac 14617 14832 55 + . . scaffold35014 GLEAN mRNA 9316 21495 0.996281 + . ID=CGI_10001389; scaffold267 WUBlastX DNA_Kolobok 493296 493439 87 - . . scaffold267 GLEAN mRNA 493275 498578 0.739869 - . ID=CGI_10018314; scaffold1423 WUBlastX LTR_Ngaro 1059099 1060418 935 + . . scaffold1423 GLEAN mRNA 1057538 1060967 0.980388 + . ID=CGI_10025454; scaffold926 WUBlastX DNA_Sola 203688 204248 164 + . . scaffold926 GLEAN mRNA 203498 204323 0.999996 + . ID=CGI_10011367; scaffold1286 WUBlastX LINE_CR1 4412 4600 36 - . . scaffold1286 GLEAN mRNA 2541 6494 0.999936 - . ID=CGI_10009504; scaffold1286 WUBlastX LINE_CR1 4826 5056 90 - . . scaffold1286 GLEAN mRNA 2541 6494 0.999936 - . ID=CGI_10009504; scaffold30814 WUBlastX LINE_RTE-X 7661 7807 69 - . . scaffold30814 GLEAN mRNA 3529 8232 0.998023 - . ID=CGI_10000671; scaffold41816 WUBlastX LINE_RTE-BovB 86569 86988 29 - . . scaffold41816 GLEAN mRNA 84334 89370 0.999542 + . ID=CGI_10005649; scaffold1736 WUBlastX LINE_RTE-X 627585 627815 82 - . . scaffold1736 GLEAN mRNA 617815 628143 0.537791 - . ID=CGI_10020987; scaffold914 WUBlastX LINE_CR1 384548 385525 406 + . . scaffold914 GLEAN mRNA 383322 392651 0.969071 - . ID=CGI_10018890; scaffold914 WUBlastX LINE_CR1 386245 386994 625 + . . scaffold914 GLEAN mRNA 383322 392651 0.969071 - . ID=CGI_10018890; scaffold1021 WUBlastX RC_Helitron 694086 695504 553 + . . scaffold1021 GLEAN mRNA 692304 699453 0.992587 + . ID=CGI_10022506; scaffold198 WUBlastX LTR_Gypsy 552572 553378 136 + . . scaffold198 GLEAN mRNA 532542 554203 0.338011 + . ID=CGI_10027815; scaffold962 WUBlastX LINE_CR1-L2 1087725 1087898 97 + . . scaffold962 GLEAN mRNA 1078349 1089726 1 - . ID=CGI_10027683; scaffold980 WUBlastX LINE_L2 78927 79571 108 - . . scaffold980 GLEAN mRNA 43953 80997 0.883179 - . ID=CGI_10019204; scaffold695 WUBlastX LINE_L1 90590 90736 104 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold847 WUBlastX LINE_L1 705725 706129 100 - . . scaffold847 GLEAN mRNA 701746 708200 0.916724 - . ID=CGI_10022288; scaffold40346 WUBlastX DNA_TcMar-Tc1 24273 25001 114 - . . scaffold40346 GLEAN mRNA 23217 29434 0.99961 - . ID=CGI_10004041; scaffold211 WUBlastX LINE_L1-Tx1 703018 703929 251 + . . scaffold211 GLEAN mRNA 691120 715917 0.0754063 + . ID=CGI_10026960; scaffold839 WUBlastX LINE_L1-Tx1 84118 85494 666 - . . scaffold839 GLEAN mRNA 78755 87937 0.999546 - . ID=CGI_10004337; scaffold839 WUBlastX LINE_L1-Tx1 86717 87676 185 - . . scaffold839 GLEAN mRNA 78755 87937 0.999546 - . ID=CGI_10004337; scaffold42508 WUBlastX LTR_Copia 135483 135812 169 + . . scaffold42508 GLEAN mRNA 132335 147112 0.99201 - . ID=CGI_10007033; scaffold678 WUBlastX LTR_Ngaro 89625 89816 33 - . . scaffold678 GLEAN mRNA 85525 97631 0.702112 + . ID=CGI_10026333; scaffold695 WUBlastX LINE_L1-Tx1 89200 89310 29 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; C36680 WUBlastX LINE_CR1 8669 8938 92 - . . C36680 GLEAN mRNA 2216 22548 0.727902 - . ID=CGI_10002070; scaffold97 WUBlastX DNA_IS4EU 88758 89123 145 + . . scaffold97 GLEAN mRNA 72894 92330 0.60683 - . ID=CGI_10005686; scaffold41650 WUBlastX LINE_L2 5943 6074 35 - . . scaffold41650 GLEAN mRNA 2732 34982 0.998592 + . ID=CGI_10005337; scaffold1322 WUBlastX LTR_Ngaro 588359 588862 189 - . . scaffold1322 GLEAN mRNA 571511 590238 0.999351 - . ID=CGI_10019486; scaffold288 WUBlastX LTR_DIRS 145203 145346 47 - . . scaffold288 GLEAN mRNA 144555 164915 0.948447 + . ID=CGI_10020659; scaffold288 WUBlastX LTR_DIRS 145366 145617 96 - . . scaffold288 GLEAN mRNA 144555 164915 0.948447 + . ID=CGI_10020659; scaffold288 WUBlastX LTR_DIRS 145859 146263 24 - . . scaffold288 GLEAN mRNA 144555 164915 0.948447 + . ID=CGI_10020659; scaffold43574 WUBlastX LINE_R2-Hero 266453 267079 143 - . . scaffold43574 GLEAN mRNA 264140 268252 0.775763 + . ID=CGI_10010886; scaffold58 WUBlastX LTR_Gypsy-Cigr 567173 568219 286 - . . scaffold58 GLEAN mRNA 565797 572122 0.982335 - . ID=CGI_10023152; scaffold58 WUBlastX LTR_Gypsy-Cigr 567173 568219 286 - . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; scaffold59 WUBlastX LTR_Ngaro 73403 74212 160 - . . scaffold59 GLEAN mRNA 68986 78873 0.61656 - . ID=CGI_10011272; scaffold194 WUBlastX LTR_Gypsy 94729 95004 87 + . . scaffold194 GLEAN mRNA 88923 103343 0.864939 + . ID=CGI_10011059; scaffold194 WUBlastX LTR_Gypsy 95896 96330 244 + . . scaffold194 GLEAN mRNA 88923 103343 0.864939 + . ID=CGI_10011059; scaffold194 WUBlastX LTR_Gypsy 96338 98047 1420 + . . scaffold194 GLEAN mRNA 88923 103343 0.864939 + . ID=CGI_10011059; scaffold44008 WUBlastX LINE_L2 179007 179570 68 - . . scaffold44008 GLEAN mRNA 176056 181412 0.761228 - . ID=CGI_10015290; scaffold44008 WUBlastX LINE_L2 179597 179869 112 - . . scaffold44008 GLEAN mRNA 176056 181412 0.761228 - . ID=CGI_10015290; scaffold86 WUBlastX DNA_Kolobok 151789 151899 29 - . . scaffold86 GLEAN mRNA 141744 153852 0.999675 - . ID=CGI_10028139; scaffold86 WUBlastX DNA_Kolobok 152021 152110 37 - . . scaffold86 GLEAN mRNA 141744 153852 0.999675 - . ID=CGI_10028139; scaffold86 WUBlastX DNA_Kolobok 152706 153047 137 - . . scaffold86 GLEAN mRNA 141744 153852 0.999675 - . ID=CGI_10028139; scaffold1473 WUBlastX LINE_L2 19105 19857 127 - . . scaffold1473 GLEAN mRNA 13162 33966 0.99911 + . ID=CGI_10003509; scaffold22 WUBlastX LTR_Pao 1073744 1073971 76 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold406 WUBlastX LTR_Gypsy 63912 64025 61 - . . scaffold406 GLEAN mRNA 63105 78647 0.760341 - . ID=CGI_10023839; scaffold772 WUBlastX LINE_RTE-X 57921 58634 192 + . . scaffold772 GLEAN mRNA 32739 66911 0.999897 - . ID=CGI_10016575; scaffold42674 WUBlastX LINE_RTE-X 177974 178741 206 + . . scaffold42674 GLEAN mRNA 169493 180850 0.544647 + . ID=CGI_10007448; scaffold43842 WUBlastX LINE_L2 191790 192554 273 - . . scaffold43842 GLEAN mRNA 186219 196229 0.99996 + . ID=CGI_10013104; scaffold1179 WUBlastX LTR_Gypsy 23541 23708 79 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold4 WUBlastX LINE_L1 474827 475012 42 - . . scaffold4 GLEAN mRNA 463325 481913 0.998731 + . ID=CGI_10021180; scaffold760 WUBlastX LTR_Gypsy 800303 800416 74 - . . scaffold760 GLEAN mRNA 798582 806606 0.999169 - . ID=CGI_10024013; scaffold1464 WUBlastX LTR_Gypsy 3016 3591 187 + . . scaffold1464 GLEAN mRNA 1479 25035 0.549445 + . ID=CGI_10003234; scaffold82 WUBlastX LINE_RTE-X 185134 185610 232 - . . scaffold82 GLEAN mRNA 181182 187437 1 + . ID=CGI_10025244; scaffold507 WUBlastX LINE_L1-Tx1 38244 38888 82 + . . scaffold507 GLEAN mRNA 28082 39253 0.563608 + . ID=CGI_10019083; scaffold1715 WUBlastX DNA_IS4EU 455052 455708 320 + . . scaffold1715 GLEAN mRNA 440859 458026 0.998814 + . ID=CGI_10019678; scaffold1301 WUBlastX DNA_TcMar-Tigge 958039 958431 61 + . . scaffold1301 GLEAN mRNA 940827 961246 0.536299 + . ID=CGI_10027751; scaffold140 WUBlastX LINE_L1-Tx1 73921 74118 77 + . . scaffold140 GLEAN mRNA 45423 78027 0.362757 - . ID=CGI_10020123; scaffold794 WUBlastX LTR_Gypsy-Cigr 280858 281007 116 + . . scaffold794 GLEAN mRNA 271227 282643 0.491343 - . ID=CGI_10017153; scaffold794 WUBlastX LTR_Gypsy-Cigr 282134 282292 33 + . . scaffold794 GLEAN mRNA 271227 282643 0.491343 - . ID=CGI_10017153; scaffold191 WUBlastX DNA_Kolobok 206833 207351 226 - . . scaffold191 GLEAN mRNA 205783 209379 0.997333 - . ID=CGI_10022416; scaffold43702 WUBlastX LINE_RTE-BovB 75811 76236 355 + . . scaffold43702 GLEAN mRNA 66519 92177 0.245591 - . ID=CGI_10011903; scaffold43702 WUBlastX LINE_RTE-BovB 75611 75799 138 + . . scaffold43702 GLEAN mRNA 66519 92177 0.245591 - . ID=CGI_10011903; scaffold1277 WUBlastX LTR_Gypsy 192063 192755 433 - . . scaffold1277 GLEAN mRNA 180148 200196 1 + . ID=CGI_10008024; scaffold506 WUBlastX LTR_DIRS 522625 523338 456 + . . scaffold506 GLEAN mRNA 522445 523350 0.999997 + . ID=CGI_10019280; scaffold1814 WUBlastX LINE_RTE-X 18517 19611 370 + . . scaffold1814 GLEAN mRNA 14118 21091 0.753154 - . ID=CGI_10003975; scaffold1888 WUBlastX DNA_TcMar-Pogo 51199 51414 90 + . . scaffold1888 GLEAN mRNA 49981 53887 0.998764 + . ID=CGI_10013292; scaffold36728 WUBlastX LINE_Penelope 671 1699 422 - . . scaffold36728 GLEAN mRNA 432 7345 0.999672 - . ID=CGI_10002097; scaffold977 WUBlastX DNA_hAT 165664 166140 150 + . . scaffold977 GLEAN mRNA 164557 166422 1 + . ID=CGI_10017164; scaffold977 WUBlastX DNA_hAT 165664 166140 150 + . . scaffold977 GLEAN mRNA 146070 167200 0.562252 - . ID=CGI_10017163; scaffold977 WUBlastX DNA_hAT 164557 165288 372 + . . scaffold977 GLEAN mRNA 164557 166422 1 + . ID=CGI_10017164; scaffold977 WUBlastX DNA_hAT 164539 165288 372 + . . scaffold977 GLEAN mRNA 146070 167200 0.562252 - . ID=CGI_10017163; scaffold1900 WUBlastX LINE_L1-Tx1 393126 393341 48 + . . scaffold1900 GLEAN mRNA 384856 401407 0.999777 - . ID=CGI_10017347; scaffold210 WUBlastX LTR_Ngaro 224167 224769 379 + . . scaffold210 GLEAN mRNA 223042 231005 0.552757 + . ID=CGI_10015889; scaffold38884 WUBlastX LTR_DIRS 48548 49297 538 + . . scaffold38884 GLEAN mRNA 44613 50381 1 - . ID=CGI_10003004; scaffold38884 WUBlastX LTR_DIRS 49339 49539 149 + . . scaffold38884 GLEAN mRNA 44613 50381 1 - . ID=CGI_10003004; scaffold6 WUBlastX LINE_L1-Tx1 188393 189628 134 + . . scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; scaffold223 WUBlastX Unknown 283323 283451 25 + . . scaffold223 GLEAN mRNA 275585 285591 0.814847 - . ID=CGI_10012923; scaffold42994 WUBlastX LINE_RTE-BovB 5441 5572 69 + . . scaffold42994 GLEAN mRNA 5441 10039 0.836758 + . ID=CGI_10008312; scaffold1773 WUBlastX LTR_Copia 83933 84175 67 - . . scaffold1773 GLEAN mRNA 83391 85072 0.980126 - . ID=CGI_10011225; scaffold459 WUBlastX DNA_TcMar-Marin 131821 132531 29 - . . scaffold459 GLEAN mRNA 130507 139915 0.650578 - . ID=CGI_10018170; scaffold1157 WUBlastX LINE_L2 229084 229206 46 - . . scaffold1157 GLEAN mRNA 212503 240416 0.462871 - . ID=CGI_10011221; scaffold374 WUBlastX DNA_hAT-Tip100 166679 166951 45 - . . scaffold374 GLEAN mRNA 164183 170659 0.970084 - . ID=CGI_10018719; scaffold461 WUBlastX LTR_Gypsy 501700 501897 24 - . . scaffold461 GLEAN mRNA 501442 501951 0.618241 - . ID=CGI_10020116; scaffold145 WUBlastX LTR_Gypsy 1152318 1153244 32 + . . scaffold145 GLEAN mRNA 1139972 1169601 0.998984 + . ID=CGI_10026576; scaffold814 WUBlastX LTR_Gypsy 86461 86604 27 - . . scaffold814 GLEAN mRNA 83997 88485 0.997298 + . ID=CGI_10008194; scaffold619 WUBlastX DNA_IS4EU 563624 563821 72 - . . scaffold619 GLEAN mRNA 562382 563821 1 - . ID=CGI_10025775; scaffold109 WUBlastX DNA_hAT-Ac 239996 240154 59 + . . scaffold109 GLEAN mRNA 221861 297851 0.997753 - . ID=CGI_10022112; scaffold267 WUBlastX DNA_TcMar-Marin 367282 367413 20 + . . scaffold267 GLEAN mRNA 365338 373963 1 + . ID=CGI_10018307; scaffold70 WUBlastX LINE_RTE-X 611424 611684 41 + . . scaffold70 GLEAN mRNA 605933 624830 0.814164 - . ID=CGI_10024778; scaffold41356 WUBlastX LINE_RTE-X 58018 58242 32 - . . scaffold41356 GLEAN mRNA 49810 66673 0.811456 + . ID=CGI_10004995; scaffold42890 WUBlastX LINE_RTE-X 86432 86557 47 + . . scaffold42890 GLEAN mRNA 82665 91191 0.716263 - . ID=CGI_10008040; scaffold42890 WUBlastX LINE_RTE-X 86432 86557 47 + . . scaffold42890 GLEAN mRNA 76174 91402 0.99612 + . ID=CGI_10008039; scaffold683 WUBlastX LINE_CR1-L2 160265 160474 65 - . . scaffold683 GLEAN mRNA 156724 197942 0.700222 + . ID=CGI_10010360; scaffold40182 WUBlastX LINE_L2 18675 18797 39 + . . scaffold40182 GLEAN mRNA 7136 27863 0.492081 + . ID=CGI_10003936; scaffold1210 WUBlastX DNA_hAT-Ac 293871 294242 72 + . . scaffold1210 GLEAN mRNA 285896 306998 0.325296 + . ID=CGI_10014610; scaffold469 WUBlastX LINE_L1-Tx1 695282 695497 59 + . . scaffold469 GLEAN mRNA 673707 700737 0.794331 - . ID=CGI_10024692; scaffold1334 WUBlastX LINE_RTE-X 12515 12649 50 + . . scaffold1334 GLEAN mRNA 1383 27081 0.666269 - . ID=CGI_10003403; scaffold1334 WUBlastX LINE_RTE-X 12703 12798 32 + . . scaffold1334 GLEAN mRNA 1383 27081 0.666269 - . ID=CGI_10003403; scaffold186 WUBlastX LINE_L1-Tx1 240584 240847 23 + . . scaffold186 GLEAN mRNA 224585 255140 0.999343 - . ID=CGI_10012616; scaffold1858 WUBlastX LINE_CR1-L2 72140 72586 44 + . . scaffold1858 GLEAN mRNA 68859 77379 0.839673 + . ID=CGI_10010443; scaffold1800 WUBlastX LINE_CR1 106857 107192 52 + . . scaffold1800 GLEAN mRNA 94548 111010 0.999101 - . ID=CGI_10016398; scaffold393 WUBlastX LTR_Gypsy 1069223 1069399 27 + . . scaffold393 GLEAN mRNA 1064716 1077682 0.999605 + . ID=CGI_10026920; scaffold1097 WUBlastX LTR_Ngaro 575785 576003 107 + . . scaffold1097 GLEAN mRNA 566282 590466 0.579339 - . ID=CGI_10024535; scaffold499 WUBlastX LTR_Gypsy 251150 251269 23 + . . scaffold499 GLEAN mRNA 249813 257188 0.581333 - . ID=CGI_10015767; scaffold1554 WUBlastX LINE_L1 486039 486188 61 + . . scaffold1554 GLEAN mRNA 475769 486188 0.34149 + . ID=CGI_10017375; scaffold1686 WUBlastX LINE_L1-Tx1 59363 59689 20 - . . scaffold1686 GLEAN mRNA 58573 59710 0.792752 - . ID=CGI_10005075; scaffold37732 WUBlastX DNA_MuDR 46263 46430 95 - . . scaffold37732 GLEAN mRNA 41329 46430 0.987958 + . ID=CGI_10002485; scaffold1132 WUBlastX LTR_Gypsy 718827 719204 95 - . . scaffold1132 GLEAN mRNA 715893 721077 0.813716 - . ID=CGI_10023330; scaffold5 WUBlastX LINE_RTE-X 62418 62666 84 + . . scaffold5 GLEAN mRNA 46548 64040 0.730165 - . ID=CGI_10012925; scaffold378 WUBlastX LINE_RTE-X 377181 377360 111 - . . scaffold378 GLEAN mRNA 365035 378834 0.825862 - . ID=CGI_10017655; scaffold552 WUBlastX LINE_RTE-X 179228 179470 48 - . . scaffold552 GLEAN mRNA 158159 180316 1 + . ID=CGI_10009325; scaffold186 WUBlastX DNA_TcMar-Tc2 230739 231161 120 + . . scaffold186 GLEAN mRNA 224356 240570 0.99998 + . ID=CGI_10012615; scaffold186 WUBlastX DNA_TcMar-Tc2 230739 231161 120 + . . scaffold186 GLEAN mRNA 224585 255140 0.999343 - . ID=CGI_10012616; scaffold226 WUBlastX LTR_DIRS 464105 464329 34 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold40282 WUBlastX LTR_Gypsy 30930 30983 39 + . . scaffold40282 GLEAN mRNA 26181 34807 1 + . ID=CGI_10004001; scaffold386 WUBlastX DNA_Kolobok-IS4 212543 213097 32 + . . scaffold386 GLEAN mRNA 207482 239068 0.43817 - . ID=CGI_10012689; scaffold738 WUBlastX DNA_hAT-Tip100 1929 2162 107 + . . scaffold738 GLEAN mRNA 1336 4448 1 + . ID=CGI_10000540; scaffold43562 WUBlastX LINE_R2-Hero 63080 63223 25 + . . scaffold43562 GLEAN mRNA 921 63783 0.694747 + . ID=CGI_10011029; scaffold138 WUBlastX LINE_RTE-X 86694 86969 66 - . . scaffold138 GLEAN mRNA 84559 99053 1 + . ID=CGI_10008428; scaffold1427 WUBlastX DNA_Harbinger 105790 106092 41 - . . scaffold1427 GLEAN mRNA 100689 106671 0.382647 + . ID=CGI_10005232; scaffold722 WUBlastX DNA_TcMar-Marin 242682 242927 70 - . . scaffold722 GLEAN mRNA 213107 274814 0.920529 - . ID=CGI_10012201; scaffold39134 WUBlastX LINE_RTE-X 42064 42348 89 - . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold42528 WUBlastX LINE_CR1-L2 132697 133080 112 - . . scaffold42528 GLEAN mRNA 99418 143145 0.451859 - . ID=CGI_10007209; scaffold1 WUBlastX LINE_CR1-L2 169915 170229 147 + . . scaffold1 GLEAN mRNA 163980 185527 0.742263 + . ID=CGI_10013469; scaffold169 WUBlastX DNA_Sola 803790 804809 70 + . . scaffold169 GLEAN mRNA 802679 805184 0.636202 + . ID=CGI_10022966; scaffold1599 WUBlastX DNA_IS4EU 556940 557020 43 + . . scaffold1599 GLEAN mRNA 554525 590190 0.924419 + . ID=CGI_10027152; scaffold1599 WUBlastX DNA_IS4EU 558411 558614 83 + . . scaffold1599 GLEAN mRNA 554525 590190 0.924419 + . ID=CGI_10027152; scaffold42770 WUBlastX LINE_L1-Tx1 16273 16968 29 - . . scaffold42770 GLEAN mRNA 14131 34729 0.562742 - . ID=CGI_10007687; scaffold461 WUBlastX LTR_Ngaro 515704 516180 104 + . . scaffold461 GLEAN mRNA 510838 522193 0.712865 + . ID=CGI_10020118; scaffold1032 WUBlastX LINE_RTE-X 568213 568431 42 - . . scaffold1032 GLEAN mRNA 545471 568883 0.969277 - . ID=CGI_10021693; scaffold1032 WUBlastX LINE_RTE-X 568213 568431 42 - . . scaffold1032 GLEAN mRNA 560649 579952 0.932371 + . ID=CGI_10021694; scaffold474 WUBlastX LINE_RTE-BovB 176392 176556 95 + . . scaffold474 GLEAN mRNA 173461 184050 0.256829 - . ID=CGI_10007598; scaffold35336 WUBlastX DNA_IS4EU 8734 9189 119 - . . scaffold35336 GLEAN mRNA 20 10310 0.999999 - . ID=CGI_10001479; scaffold1036 WUBlastX DNA_Maverick 204877 205002 48 - . . scaffold1036 GLEAN mRNA 202062 206192 0.444605 - . ID=CGI_10019953; scaffold1036 WUBlastX DNA_Maverick 205028 205279 26 - . . scaffold1036 GLEAN mRNA 202062 206192 0.444605 - . ID=CGI_10019953; scaffold1036 WUBlastX DNA_Maverick 205739 205936 91 - . . scaffold1036 GLEAN mRNA 202062 206192 0.444605 - . ID=CGI_10019953; scaffold1036 WUBlastX DNA_TcMar-Tc1 174736 175119 22 + . . scaffold1036 GLEAN mRNA 165168 179169 0.593142 - . ID=CGI_10019951; scaffold833 WUBlastX LTR_ERV1 369149 370366 189 - . . scaffold833 GLEAN mRNA 336322 390734 0.191045 + . ID=CGI_10016744; scaffold632 WUBlastX LINE_RTE-X 272585 274468 957 + . . scaffold632 GLEAN mRNA 271859 278767 0.999129 + . ID=CGI_10018450; scaffold354 WUBlastX LTR_Ngaro 141037 141276 109 + . . scaffold354 GLEAN mRNA 139508 142225 0.54483 - . ID=CGI_10025700; scaffold354 WUBlastX LTR_Ngaro 141037 141276 109 + . . scaffold354 GLEAN mRNA 139640 141904 0.996603 + . ID=CGI_10025701; scaffold36642 WUBlastX LINE_L1 3077 3268 25 - . . scaffold36642 GLEAN mRNA 976 27657 0.999986 + . ID=CGI_10002025; scaffold987 WUBlastX LINE_CR1 77887 78513 147 - . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold1825 WUBlastX LINE_L2 158585 159199 173 + . . scaffold1825 GLEAN mRNA 146338 162532 0.790331 + . ID=CGI_10011146; scaffold301 WUBlastX DNA_Sola 946578 947273 199 - . . scaffold301 GLEAN mRNA 935860 957762 0.976661 - . ID=CGI_10026737; scaffold601 WUBlastX LINE_CR1 602502 602576 22 + . . scaffold601 GLEAN mRNA 586023 611758 0.912594 - . ID=CGI_10026838; scaffold38272 WUBlastX LINE_L1-Tx1 51377 51619 68 + . . scaffold38272 GLEAN mRNA 12040 52169 0.605388 + . ID=CGI_10002702; scaffold1352 WUBlastX LINE_RTE-X 403072 403155 38 + . . scaffold1352 GLEAN mRNA 400458 408667 0.333165 + . ID=CGI_10018425; scaffold1345 WUBlastX LTR_Gypsy 242261 242401 24 - . . scaffold1345 GLEAN mRNA 239892 251479 1 - . ID=CGI_10016283; scaffold280 WUBlastX LINE_CR1-L2 589113 589568 204 - . . scaffold280 GLEAN mRNA 579437 592170 0.977964 - . ID=CGI_10024596; scaffold750 WUBlastX LINE_CR1-L2 15138 15839 190 + . . scaffold750 GLEAN mRNA 5241 30687 0.971968 + . ID=CGI_10022205; scaffold854 WUBlastX LTR_Pao 703378 704277 229 + . . scaffold854 GLEAN mRNA 698978 729843 0.21294 + . ID=CGI_10022264; scaffold41344 WUBlastX LINE_L2 113094 113459 246 - . . scaffold41344 GLEAN mRNA 105897 115468 0.999612 + . ID=CGI_10004984; scaffold1671 WUBlastX LINE_RTE-BovB 412934 413908 225 + . . scaffold1671 GLEAN mRNA 411663 422714 0.51142 + . ID=CGI_10015159; scaffold42674 WUBlastX LINE_RTE-X 172423 173298 112 - . . scaffold42674 GLEAN mRNA 169493 180850 0.544647 + . ID=CGI_10007448; scaffold427 WUBlastX LTR_Gypsy 78177 80045 1070 + . . scaffold427 GLEAN mRNA 74413 82948 0.777732 - . ID=CGI_10006661; scaffold39358 WUBlastX DNA_IS4EU 37704 37958 64 + . . scaffold39358 GLEAN mRNA 36445 38443 0.716437 + . ID=CGI_10003326; scaffold705 WUBlastX DNA_Kolobok-IS4 402700 403773 133 + . . scaffold705 GLEAN mRNA 397843 425733 0.998279 - . ID=CGI_10015520; scaffold847 WUBlastX LINE_RTE-X 281182 281667 151 - . . scaffold847 GLEAN mRNA 273681 282893 0.998253 - . ID=CGI_10022270; scaffold847 WUBlastX LINE_RTE-X 281693 282259 67 - . . scaffold847 GLEAN mRNA 273681 282893 0.998253 - . ID=CGI_10022270; scaffold6 WUBlastX LTR_Pao 128783 129556 549 + . . scaffold6 GLEAN mRNA 120164 144778 0.978215 - . ID=CGI_10022297; scaffold334 WUBlastX LINE_L1 1048227 1048457 58 + . . scaffold334 GLEAN mRNA 1033963 1069994 0.961302 - . ID=CGI_10025971; scaffold35994 WUBlastX LINE_Penelope 9739 10764 116 + . . scaffold35994 GLEAN mRNA 1476 13595 0.650997 + . ID=CGI_10001674; scaffold22 WUBlastX LTR_Gypsy 934730 935083 98 - . . scaffold22 GLEAN mRNA 924261 941065 0.999814 - . ID=CGI_10028884; scaffold22 WUBlastX LTR_Gypsy 935536 935907 229 - . . scaffold22 GLEAN mRNA 924261 941065 0.999814 - . ID=CGI_10028884; scaffold1554 WUBlastX LTR_Gypsy 6254 6574 38 - . . scaffold1554 GLEAN mRNA 977 22779 0.529783 + . ID=CGI_10017354; scaffold1352 WUBlastX LINE_RTE-X 402007 402435 85 + . . scaffold1352 GLEAN mRNA 400458 408667 0.333165 + . ID=CGI_10018425; scaffold1352 WUBlastX LINE_RTE-X 403387 404196 165 + . . scaffold1352 GLEAN mRNA 400458 408667 0.333165 + . ID=CGI_10018425; scaffold39134 WUBlastX LTR_Gypsy 50197 50379 117 + . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold142 WUBlastX DNA_MuDR 980749 982617 440 + . . scaffold142 GLEAN mRNA 963818 985587 0.999623 - . ID=CGI_10026782; scaffold498 WUBlastX DNA_Sola 232021 233472 432 - . . scaffold498 GLEAN mRNA 228451 286019 0.470322 + . ID=CGI_10012431; scaffold1500 WUBlastX LTR_Gypsy 185276 185683 147 - . . scaffold1500 GLEAN mRNA 171651 188068 0.692586 - . ID=CGI_10007900; scaffold1844 WUBlastX LINE_RTE-X 125499 125591 25 + . . scaffold1844 GLEAN mRNA 108283 134853 0.924542 + . ID=CGI_10006619; scaffold191 WUBlastX LINE_L1 557044 558720 308 + . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold39268 WUBlastX LINE_L2 19319 20764 494 + . . scaffold39268 GLEAN mRNA 16420 27530 0.768779 - . ID=CGI_10003274; scaffold1583 WUBlastX DNA_Maverick 759064 759594 289 - . . scaffold1583 GLEAN mRNA 756798 766988 0.512265 - . ID=CGI_10025840; scaffold1583 WUBlastX DNA_Maverick 760038 760841 299 - . . scaffold1583 GLEAN mRNA 756798 766988 0.512265 - . ID=CGI_10025840; scaffold38026 WUBlastX LTR_Gypsy 24717 24962 72 + . . scaffold38026 GLEAN mRNA 24330 29871 1 - . ID=CGI_10002428; scaffold38026 WUBlastX LTR_Gypsy 26409 26708 181 + . . scaffold38026 GLEAN mRNA 24330 29871 1 - . ID=CGI_10002428; scaffold38026 WUBlastX LTR_Gypsy 27278 27835 161 + . . scaffold38026 GLEAN mRNA 24330 29871 1 - . ID=CGI_10002428; scaffold35438 WUBlastX LINE_L1-Tx1 10027 10398 62 - . . scaffold35438 GLEAN mRNA 3327 22372 0.999028 - . ID=CGI_10001514; scaffold1448 WUBlastX LTR_Ngaro 29798 30106 66 - . . scaffold1448 GLEAN mRNA 28289 31614 0.624176 - . ID=CGI_10011853; scaffold695 WUBlastX LINE_RTE-BovB 715568 716314 559 + . . scaffold695 GLEAN mRNA 705983 727911 0.988963 - . ID=CGI_10023304; scaffold39652 WUBlastX LINE_L2 64383 64450 27 - . . scaffold39652 GLEAN mRNA 64383 64817 0.999372 - . ID=CGI_10003506; scaffold1241 WUBlastX LTR_Gypsy 158256 158948 29 - . . scaffold1241 GLEAN mRNA 158229 159365 0.555898 - . ID=CGI_10016428; scaffold1009 WUBlastX DNA_hAT-hATw 1267554 1268387 21 - . . scaffold1009 GLEAN mRNA 1266990 1268708 0.528485 - . ID=CGI_10028792; scaffold43388 WUBlastX DNA_IS4EU 225812 225952 42 - . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold987 WUBlastX LINE_L1-Tx1 76117 76371 32 - . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold1877 WUBlastX DNA_NOF? 98822 98962 35 - . . scaffold1877 GLEAN mRNA 86728 98983 0.999922 - . ID=CGI_10011956; scaffold271 WUBlastX DNA_MuDR 366787 367122 23 + . . scaffold271 GLEAN mRNA 360008 371496 0.33399 + . ID=CGI_10024471; scaffold4 WUBlastX LINE_Dong-R4 473498 473944 22 - . . scaffold4 GLEAN mRNA 463325 481913 0.998731 + . ID=CGI_10021180; scaffold38780 WUBlastX DNA_PiggyBac 6612 6794 63 - . . scaffold38780 GLEAN mRNA 2671 16848 0.959487 - . ID=CGI_10002959; scaffold94 WUBlastX LTR_Copia 105126 105176 25 - . . scaffold94 GLEAN mRNA 104546 105247 0.99999 - . ID=CGI_10013912; scaffold541 WUBlastX LTR_Gypsy 62287 62532 69 + . . scaffold541 GLEAN mRNA 50245 65351 0.650911 - . ID=CGI_10022375; scaffold43242 WUBlastX DNA_TcMar-Tc2 155202 155405 93 + . . scaffold43242 GLEAN mRNA 154565 157582 0.118333 + . ID=CGI_10009546; scaffold828 WUBlastX DNA_IS4EU 171103 171381 20 - . . scaffold828 GLEAN mRNA 167866 174886 0.999415 - . ID=CGI_10007370; scaffold43302 WUBlastX DNA_IS4EU 15684 15950 99 + . . scaffold43302 GLEAN mRNA 6372 24073 0.277786 - . ID=CGI_10009755; scaffold152 WUBlastX LINE_CR1-L2 74261 74626 78 + . . scaffold152 GLEAN mRNA 60138 75351 0.999676 - . ID=CGI_10014894; scaffold1462 WUBlastX DNA_IS4EU 396186 396497 54 + . . scaffold1462 GLEAN mRNA 396186 396948 0.759958 + . ID=CGI_10014389; scaffold27654 WUBlastX DNA_IS4EU 2371 2682 54 + . . scaffold27654 GLEAN mRNA 2371 2694 0.999068 + . ID=CGI_10000368; scaffold34 WUBlastX DNA_IS4EU 292455 292814 62 - . . scaffold34 GLEAN mRNA 290500 292814 0.678889 - . ID=CGI_10015943; scaffold43134 WUBlastX DNA_IS4EU 214645 214956 54 - . . scaffold43134 GLEAN mRNA 205984 218530 0.990712 + . ID=CGI_10008898; scaffold43134 WUBlastX DNA_IS4EU 214645 214956 54 - . . scaffold43134 GLEAN mRNA 212178 214956 0.948909 - . ID=CGI_10008899; scaffold750 WUBlastX LINE_CR1 14908 15126 35 + . . scaffold750 GLEAN mRNA 5241 30687 0.971968 + . ID=CGI_10022205; C29788 WUBlastX LINE_L1 5576 6241 80 + . . C29788 GLEAN mRNA 5498 6724 0.72793 + . ID=CGI_10000560; scaffold1558 WUBlastX LINE_L1-Tx1 41203 41463 53 - . . scaffold1558 GLEAN mRNA 34398 73907 0.517269 - . ID=CGI_10004094; scaffold1094 WUBlastX DNA_IS4EU 639356 639910 65 - . . scaffold1094 GLEAN mRNA 609558 640373 0.531771 - . ID=CGI_10021838; scaffold3 WUBlastX DNA_Kolobok-Hyd 289365 289541 52 - . . scaffold3 GLEAN mRNA 287358 293038 0.456262 - . ID=CGI_10027289; scaffold3 WUBlastX DNA_Kolobok-Hyd 289961 290182 38 - . . scaffold3 GLEAN mRNA 287358 293038 0.456262 - . ID=CGI_10027289; scaffold801 WUBlastX LINE_RTE-X 638252 638563 82 + . . scaffold801 GLEAN mRNA 629688 677591 0.460193 - . ID=CGI_10024093; scaffold39730 WUBlastX DNA_TcMar-Marin 16649 16900 90 + . . scaffold39730 GLEAN mRNA 3685 28743 0.191255 - . ID=CGI_10003588; scaffold39730 WUBlastX DNA_TcMar-Marin 16649 16900 90 + . . scaffold39730 GLEAN mRNA 16282 30561 0.999947 + . ID=CGI_10003589; scaffold41598 WUBlastX DNA_PiggyBac 66009 66413 94 - . . scaffold41598 GLEAN mRNA 59426 74794 0.449575 - . ID=CGI_10005304; scaffold41568 WUBlastX LINE_RTE-X 77939 78112 42 - . . scaffold41568 GLEAN mRNA 75182 91109 0.978007 + . ID=CGI_10005300; scaffold987 WUBlastX LTR_DIRS 85985 86347 275 - . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold987 WUBlastX LTR_DIRS 87137 87964 622 - . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold449 WUBlastX LINE_CR1-L2 185579 186016 119 - . . scaffold449 GLEAN mRNA 184691 200379 0.558382 - . ID=CGI_10010963; scaffold94 WUBlastX LTR_Gypsy 63482 64069 93 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold1233 WUBlastX DNA_IS4EU 13152 13433 170 - . . scaffold1233 GLEAN mRNA 818 16086 0.387616 - . ID=CGI_10003098; scaffold269 WUBlastX LINE_RTE-X 455977 456306 82 + . . scaffold269 GLEAN mRNA 436625 461028 0.269378 - . ID=CGI_10019006; scaffold1018 WUBlastX LTR_Gypsy 551251 552066 112 - . . scaffold1018 GLEAN mRNA 547902 567181 0.39343 + . ID=CGI_10019779; scaffold191 WUBlastX DNA_MuDR 551142 551546 93 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold1789 WUBlastX DNA_Kolobok 15566 15820 92 + . . scaffold1789 GLEAN mRNA 10291 23583 0.974284 + . ID=CGI_10003175; C33658 WUBlastX DNA_Sola 10759 10881 23 + . . C33658 GLEAN mRNA 10027 15037 0.499831 - . ID=CGI_10001113; scaffold49 WUBlastX DNA_IS 254181 255044 1443 + . . scaffold49 GLEAN mRNA 244358 267681 0.992812 - . ID=CGI_10013285; scaffold1222 WUBlastX LINE_RTE-X 136384 136731 183 - . . scaffold1222 GLEAN mRNA 134214 152280 0.999999 + . ID=CGI_10016238; scaffold950 WUBlastX DNA_TcMar-Tc2 108094 108936 139 - . . scaffold950 GLEAN mRNA 86388 112962 1 - . ID=CGI_10022920; scaffold1599 WUBlastX LTR_Gypsy 678293 679456 1110 - . . scaffold1599 GLEAN mRNA 676136 688286 0.501311 - . ID=CGI_10027155; scaffold1749 WUBlastX LTR_DIRS 93800 94207 109 - . . scaffold1749 GLEAN mRNA 92161 94954 0.876214 - . ID=CGI_10008254; scaffold1036 WUBlastX DNA_Maverick 596417 596524 43 + . . scaffold1036 GLEAN mRNA 594409 600469 0.995654 - . ID=CGI_10019975; scaffold1036 WUBlastX DNA_Maverick 596556 596873 163 + . . scaffold1036 GLEAN mRNA 594409 600469 0.995654 - . ID=CGI_10019975; scaffold513 WUBlastX LTR_Pao 10642 11019 42 + . . scaffold513 GLEAN mRNA 2113 39536 0.917684 + . ID=CGI_10022134; scaffold352 WUBlastX LTR_Gypsy-Cigr 151332 153071 1327 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold94 WUBlastX LTR_Gypsy 65751 66698 175 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold808 WUBlastX LINE_L1-Tx1 185609 188149 1187 - . . scaffold808 GLEAN mRNA 163011 189170 0.494982 - . ID=CGI_10019018; scaffold808 WUBlastX LINE_L1-Tx1 188722 188982 160 - . . scaffold808 GLEAN mRNA 163011 189170 0.494982 - . ID=CGI_10019018; scaffold828 WUBlastX DNA_TcMar-Fot1 171297 172394 158 - . . scaffold828 GLEAN mRNA 167866 174886 0.999415 - . ID=CGI_10007370; scaffold41560 WUBlastX LINE_RTE-X 110217 110426 66 + . . scaffold41560 GLEAN mRNA 106439 114729 1 + . ID=CGI_10005285; scaffold43396 WUBlastX LTR_Ngaro 235445 235765 100 - . . scaffold43396 GLEAN mRNA 229822 241717 0.993815 + . ID=CGI_10010156; scaffold976 WUBlastX LTR_Gypsy 54977 56803 1099 + . . scaffold976 GLEAN mRNA 40652 60127 0.884558 - . ID=CGI_10014002; scaffold41174 WUBlastX LINE_RTE-X 69562 70299 103 + . . scaffold41174 GLEAN mRNA 37943 88980 0.479824 - . ID=CGI_10004794; scaffold22 WUBlastX LINE_L1-Tx1 1081990 1082523 121 + . . scaffold22 GLEAN mRNA 1079633 1088835 0.644932 - . ID=CGI_10028896; scaffold22 WUBlastX LINE_L1-Tx1 1082950 1083744 115 + . . scaffold22 GLEAN mRNA 1079633 1088835 0.644932 - . ID=CGI_10028896; scaffold40556 WUBlastX LTR_Ngaro 10204 10968 248 - . . scaffold40556 GLEAN mRNA 9810 16493 0.715629 - . ID=CGI_10004250; scaffold1891 WUBlastX DNA_Harbinger 151116 151211 46 - . . scaffold1891 GLEAN mRNA 133537 158573 0.499706 - . ID=CGI_10008737; scaffold1891 WUBlastX DNA_Harbinger 151411 151569 37 - . . scaffold1891 GLEAN mRNA 133537 158573 0.499706 - . ID=CGI_10008737; scaffold1891 WUBlastX DNA_Harbinger 152089 152433 129 - . . scaffold1891 GLEAN mRNA 133537 158573 0.499706 - . ID=CGI_10008737; scaffold1054 WUBlastX DNA_Kolobok 332850 333041 66 + . . scaffold1054 GLEAN mRNA 331138 333504 0.999415 + . ID=CGI_10012969; scaffold43686 WUBlastX DNA_Zator 185000 185242 83 - . . scaffold43686 GLEAN mRNA 172665 193661 0.978405 - . ID=CGI_10011758; scaffold550 WUBlastX DNA_Harbinger 56147 56266 66 - . . scaffold550 GLEAN mRNA 42295 70110 0.723644 + . ID=CGI_10012483; scaffold86 WUBlastX LINE_L1-Tx1 216521 217057 151 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold86 WUBlastX LINE_L1-Tx1 217068 217220 92 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold973 WUBlastX DNA_IS4EU 482976 483332 163 - . . scaffold973 GLEAN mRNA 459812 495219 0.606957 - . ID=CGI_10021557; scaffold973 WUBlastX DNA_IS4EU 483756 484178 114 - . . scaffold973 GLEAN mRNA 459812 495219 0.606957 - . ID=CGI_10021557; scaffold973 WUBlastX DNA_IS4EU 484449 484619 76 - . . scaffold973 GLEAN mRNA 459812 495219 0.606957 - . ID=CGI_10021557; scaffold973 WUBlastX DNA_IS4EU 484809 484901 56 - . . scaffold973 GLEAN mRNA 459812 495219 0.606957 - . ID=CGI_10021557; scaffold973 WUBlastX DNA_IS4EU 485240 485359 29 - . . scaffold973 GLEAN mRNA 459812 495219 0.606957 - . ID=CGI_10021557; scaffold1862 WUBlastX LINE_L1 190891 191364 47 + . . scaffold1862 GLEAN mRNA 170077 209119 0.953083 - . ID=CGI_10021893; scaffold43388 WUBlastX DNA_IS4EU 218291 219073 414 - . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold43630 WUBlastX DNA_TcMar-Tc1 243880 244899 370 - . . scaffold43630 GLEAN mRNA 172610 245452 0.0301586 + . ID=CGI_10011528; scaffold1171 WUBlastX LINE_L1 12753 14243 296 + . . scaffold1171 GLEAN mRNA 12089 17698 0.989581 + . ID=CGI_10002857; scaffold659 WUBlastX DNA_IS4EU 11805 12482 296 + . . scaffold659 GLEAN mRNA 29 26278 0.692942 + . ID=CGI_10014692; scaffold659 WUBlastX DNA_IS4EU 12473 12715 148 + . . scaffold659 GLEAN mRNA 29 26278 0.692942 + . ID=CGI_10014692; scaffold75 WUBlastX DNA_TcMar-Marin 48769 48909 55 + . . scaffold75 GLEAN mRNA 46839 68019 0.92374 - . ID=CGI_10005790; scaffold75 WUBlastX DNA_TcMar-Marin 49597 50001 232 + . . scaffold75 GLEAN mRNA 46839 68019 0.92374 - . ID=CGI_10005790; scaffold209 WUBlastX DNA_TcMar-Tc1 261392 261778 120 + . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold396 WUBlastX LTR_Ngaro 142048 142851 247 - . . scaffold396 GLEAN mRNA 135948 145670 0.499792 + . ID=CGI_10018099; scaffold126 WUBlastX DNA_IS4EU 387864 388868 601 + . . scaffold126 GLEAN mRNA 387636 399699 0.997493 + . ID=CGI_10019196; scaffold315 WUBlastX DNA_IS4EU 30717 31721 601 + . . scaffold315 GLEAN mRNA 30489 37096 0.901071 + . ID=CGI_10020398; scaffold603 WUBlastX LINE_L1 16477 16758 41 - . . scaffold603 GLEAN mRNA 13948 26603 0.533291 - . ID=CGI_10009894; scaffold449 WUBlastX LINE_L2 184691 185857 500 - . . scaffold449 GLEAN mRNA 184691 200379 0.558382 - . ID=CGI_10010963; scaffold337 WUBlastX RC_Helitron 915111 915239 76 - . . scaffold337 GLEAN mRNA 912502 926173 0.999981 - . ID=CGI_10028087; scaffold337 WUBlastX RC_Helitron 916100 916213 138 - . . scaffold337 GLEAN mRNA 912502 926173 0.999981 - . ID=CGI_10028087; scaffold660 WUBlastX LINE_RTE-BovB 155829 156029 235 + . . scaffold660 GLEAN mRNA 129253 184428 0.855126 - . ID=CGI_10013751; scaffold41568 WUBlastX LTR_Gypsy 86871 89534 636 + . . scaffold41568 GLEAN mRNA 75182 91109 0.978007 + . ID=CGI_10005300; scaffold35994 WUBlastX LINE_Penelope 9943 10767 326 + . . scaffold35994 GLEAN mRNA 1476 13595 0.650997 + . ID=CGI_10001674; scaffold35994 WUBlastX LINE_Penelope 10754 11227 224 + . . scaffold35994 GLEAN mRNA 1476 13595 0.650997 + . ID=CGI_10001674; scaffold35994 WUBlastX LINE_Penelope 11250 11513 158 + . . scaffold35994 GLEAN mRNA 1476 13595 0.650997 + . ID=CGI_10001674; scaffold43008 WUBlastX LINE_L1-Tx1 85383 86114 249 - . . scaffold43008 GLEAN mRNA 78684 87806 0.543465 - . ID=CGI_10008462; scaffold43008 WUBlastX LINE_L1-Tx1 86135 86500 99 - . . scaffold43008 GLEAN mRNA 78684 87806 0.543465 - . ID=CGI_10008462; scaffold632 WUBlastX LINE_L2 482321 482776 633 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold1171 WUBlastX LINE_L1-Tx1 16322 16627 47 + . . scaffold1171 GLEAN mRNA 12089 17698 0.989581 + . ID=CGI_10002857; scaffold1678 WUBlastX DNA_IS4EU 174224 174382 31 + . . scaffold1678 GLEAN mRNA 153695 176010 0.290685 - . ID=CGI_10010386; scaffold34106 WUBlastX LTR_Gypsy 11290 11325 29 + . . scaffold34106 GLEAN mRNA 1207 14937 0.504518 - . ID=CGI_10001211; scaffold206 WUBlastX LTR_ERV1 182142 182588 52 - . . scaffold206 GLEAN mRNA 180394 182705 0.998688 - . ID=CGI_10011379; scaffold280 WUBlastX LTR_ERV1 695453 695968 37 - . . scaffold280 GLEAN mRNA 692326 718784 0.731079 - . ID=CGI_10024602; scaffold752 WUBlastX LTR_ERV1 231492 231998 38 + . . scaffold752 GLEAN mRNA 231273 232436 0.996081 + . ID=CGI_10010043; scaffold1813 WUBlastX LINE_L1 39487 40065 42 + . . scaffold1813 GLEAN mRNA 39463 41634 0.702385 + . ID=CGI_10005990; scaffold178 WUBlastX LINE_Penelope 104707 104895 45 - . . scaffold178 GLEAN mRNA 95706 112577 0.461285 - . ID=CGI_10004828; scaffold599 WUBlastX LINE_RTE-X 292563 292724 27 + . . scaffold599 GLEAN mRNA 290478 340724 0.424971 - . ID=CGI_10021714; scaffold150 WUBlastX DNA_PiggyBac 237995 238162 50 + . . scaffold150 GLEAN mRNA 224010 241607 0.593383 + . ID=CGI_10028591; scaffold40172 WUBlastX LINE_L1-Tx1 37356 37520 31 - . . scaffold40172 GLEAN mRNA 6995 45177 0.895984 + . ID=CGI_10003930; scaffold38510 WUBlastX DNA_TcMar-Tc1 19997 20395 35 - . . scaffold38510 GLEAN mRNA 7470 20879 0.242516 - . ID=CGI_10002810; scaffold38510 WUBlastX DNA_TcMar-Tc1 19997 20395 35 - . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold42366 WUBlastX LINE_L1-Tx1 36496 36741 34 - . . scaffold42366 GLEAN mRNA 24937 76161 0.245386 + . ID=CGI_10006699; scaffold42366 WUBlastX LINE_L1-Tx1 36538 36741 47 - . . scaffold42366 GLEAN mRNA 24937 76161 0.245386 + . ID=CGI_10006699; scaffold86 WUBlastX LINE_L1-Tx1 217095 217250 76 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold1870 WUBlastX LINE_L1-Tx1 106335 106598 22 - . . scaffold1870 GLEAN mRNA 96078 123718 0.283709 - . ID=CGI_10013182; scaffold1578 WUBlastX LTR_Pao 66976 67035 26 + . . scaffold1578 GLEAN mRNA 44226 72498 0.998909 - . ID=CGI_10008160; scaffold1164 WUBlastX LINE_L2 92552 92992 65 - . . scaffold1164 GLEAN mRNA 91892 93484 0.836235 - . ID=CGI_10012999; scaffold378 WUBlastX LTR_Gypsy 344975 345214 34 - . . scaffold378 GLEAN mRNA 344618 345241 0.999372 - . ID=CGI_10017652; scaffold128 WUBlastX DNA_IS4EU 60626 60973 57 - . . scaffold128 GLEAN mRNA 54342 63516 0.993133 - . ID=CGI_10021504; scaffold37946 WUBlastX DNA_IS4EU 14533 14700 36 + . . scaffold37946 GLEAN mRNA 2025 20198 0.734311 + . ID=CGI_10002553; scaffold37946 WUBlastX DNA_IS4EU 14696 14851 31 + . . scaffold37946 GLEAN mRNA 2025 20198 0.734311 + . ID=CGI_10002553; scaffold730 WUBlastX DNA_Kolobok 135552 135671 31 + . . scaffold730 GLEAN mRNA 114725 144988 0.404014 + . ID=CGI_10019888; C33368 WUBlastX DNA_Kolobok-Hyd 7372 7908 44 + . . C33368 GLEAN mRNA 2894 7917 0.564757 + . ID=CGI_10001057; scaffold40680 WUBlastX DNA_TcMar-Tc1 10821 10985 25 + . . scaffold40680 GLEAN mRNA 16 36776 0.246623 - . ID=CGI_10004353; scaffold612 WUBlastX LTR_Gypsy 98215 98469 52 - . . scaffold612 GLEAN mRNA 97858 98469 0.449004 - . ID=CGI_10009462; scaffold1743 WUBlastX DNA_hAT-hAT5 208709 208915 34 + . . scaffold1743 GLEAN mRNA 206587 209579 0.614112 + . ID=CGI_10011657; scaffold1743 WUBlastX DNA_hAT-hAT5 209268 209414 43 + . . scaffold1743 GLEAN mRNA 206587 209579 0.614112 + . ID=CGI_10011657; scaffold43662 WUBlastX DNA_Kolobok-Hyd 217 393 63 - . . scaffold43662 GLEAN mRNA 16 393 0.836238 - . ID=CGI_10011602; scaffold924 WUBlastX DNA_Sola 39924 40133 48 + . . scaffold924 GLEAN mRNA 39924 42016 0.322694 + . ID=CGI_10006838; scaffold304 WUBlastX DNA_Kolobok-IS4 99360 99578 69 + . . scaffold304 GLEAN mRNA 99360 99893 0.999366 + . ID=CGI_10016550; scaffold43182 WUBlastX DNA_Kolobok 148862 149101 74 - . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold631 WUBlastX LINE_RTE-X 96701 97156 69 + . . scaffold631 GLEAN mRNA 95661 117923 0.999624 - . ID=CGI_10014170; scaffold358 WUBlastX LINE_RTE-X 137158 137346 37 + . . scaffold358 GLEAN mRNA 127311 138997 0.861912 - . ID=CGI_10013024; scaffold719 WUBlastX LTR_Pao 352494 352769 146 + . . scaffold719 GLEAN mRNA 352016 396683 0.96406 + . ID=CGI_10016008; scaffold274 WUBlastX LTR_Copia 136010 136702 150 + . . scaffold274 GLEAN mRNA 110645 138083 0.999675 + . ID=CGI_10017013; scaffold730 WUBlastX DNA_Crypton 387746 388087 72 - . . scaffold730 GLEAN mRNA 359674 389340 0.587782 - . ID=CGI_10019895; scaffold730 WUBlastX DNA_Crypton 388453 389073 65 - . . scaffold730 GLEAN mRNA 359674 389340 0.587782 - . ID=CGI_10019895; scaffold986 WUBlastX DNA_hAT-Ac 46590 47048 157 + . . scaffold986 GLEAN mRNA 30562 55582 0.15443 + . ID=CGI_10009957; scaffold499 WUBlastX LTR_DIRS 250489 251067 90 + . . scaffold499 GLEAN mRNA 249813 257188 0.581333 - . ID=CGI_10015767; scaffold1743 WUBlastX DNA_hAT-Blackja 207142 207870 133 + . . scaffold1743 GLEAN mRNA 206587 209579 0.614112 + . ID=CGI_10011657; scaffold35438 WUBlastX LINE_CR1 13545 13721 61 - . . scaffold35438 GLEAN mRNA 3327 22372 0.999028 - . ID=CGI_10001514; scaffold1749 WUBlastX LTR_DIRS 94233 94514 31 - . . scaffold1749 GLEAN mRNA 92161 94954 0.876214 - . ID=CGI_10008254; scaffold117 WUBlastX LTR_Gypsy 381961 382707 102 + . . scaffold117 GLEAN mRNA 381424 383832 0.991601 + . ID=CGI_10016969; scaffold1020 WUBlastX LINE_RTE-X 286369 286791 112 + . . scaffold1020 GLEAN mRNA 282198 287246 0.857946 + . ID=CGI_10012858; scaffold541 WUBlastX LTR_Gypsy-Cigr 62362 62544 179 + . . scaffold541 GLEAN mRNA 50245 65351 0.650911 - . ID=CGI_10022375; scaffold1448 WUBlastX LTR_Ngaro 29855 30106 81 - . . scaffold1448 GLEAN mRNA 28289 31614 0.624176 - . ID=CGI_10011853; scaffold597 WUBlastX LINE_CR1 35513 35911 77 - . . scaffold597 GLEAN mRNA 30096 40610 0.999676 + . ID=CGI_10004927; scaffold597 WUBlastX LINE_CR1 37201 37599 77 - . . scaffold597 GLEAN mRNA 30096 40610 0.999676 + . ID=CGI_10004927; scaffold168 WUBlastX LINE_L2 331042 331506 122 - . . scaffold168 GLEAN mRNA 320902 337238 0.996215 - . ID=CGI_10025590; scaffold1831 WUBlastX LINE_L1-Tx1 34880 34937 37 + . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_L1-Tx1 34880 35122 37 + . . scaffold1831 GLEAN mRNA 30321 42527 0.595655 - . ID=CGI_10002913; scaffold247 WUBlastX LINE_RTE-BovB 203682 203972 96 - . . scaffold247 GLEAN mRNA 197989 208519 0.419557 + . ID=CGI_10018593; scaffold1476 WUBlastX LINE_RTE-X 172510 172632 29 - . . scaffold1476 GLEAN mRNA 169615 179488 0.862141 + . ID=CGI_10009826; scaffold1032 WUBlastX LINE_L2 707715 708161 66 + . . scaffold1032 GLEAN mRNA 707458 710864 0.590104 - . ID=CGI_10021705; scaffold955 WUBlastX LINE_RTE-BovB 118510 118665 28 - . . scaffold955 GLEAN mRNA 102883 129964 0.99714 + . ID=CGI_10009853; scaffold955 WUBlastX LINE_RTE-BovB 119682 119981 29 - . . scaffold955 GLEAN mRNA 102883 129964 0.99714 + . ID=CGI_10009853; scaffold980 WUBlastX LINE_RTE-X 165590 165724 60 + . . scaffold980 GLEAN mRNA 163810 172327 0.499535 - . ID=CGI_10019213; scaffold1221 WUBlastX LINE_RTE-X 303511 303855 164 - . . scaffold1221 GLEAN mRNA 295053 306727 0.999196 + . ID=CGI_10019742; scaffold1322 WUBlastX LTR_Pao 408951 409178 119 - . . scaffold1322 GLEAN mRNA 394198 409376 0.999229 - . ID=CGI_10019477; scaffold43076 WUBlastX LTR_Gypsy 187822 188442 110 - . . scaffold43076 GLEAN mRNA 177922 191367 0.98946 - . ID=CGI_10008769; scaffold43076 WUBlastX LTR_Gypsy 187822 188442 110 - . . scaffold43076 GLEAN mRNA 186716 211039 0.795025 + . ID=CGI_10008770; scaffold43280 WUBlastX DNA_Sola 28276 28638 78 - . . scaffold43280 GLEAN mRNA 27245 29335 1 - . ID=CGI_10009653; scaffold43280 WUBlastX DNA_Sola 28669 29022 62 - . . scaffold43280 GLEAN mRNA 27245 29335 1 - . ID=CGI_10009653; scaffold38048 WUBlastX DNA_TcMar-Tc1 33173 33472 55 + . . scaffold38048 GLEAN mRNA 5473 39952 0.557382 + . ID=CGI_10002589; scaffold852 WUBlastX LTR_Gypsy-Cigr 70439 71098 209 - . . scaffold852 GLEAN mRNA 66203 74351 1 + . ID=CGI_10012036; scaffold1532 WUBlastX LTR_Gypsy-Cigr 232144 232836 178 + . . scaffold1532 GLEAN mRNA 231877 233427 0.438723 + . ID=CGI_10028239; scaffold88 WUBlastX DNA_hAT-Tip100 6003 6401 101 + . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX DNA_hAT-Tip100 6380 6748 113 + . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold67 WUBlastX DNA_hAT-Tip100 28846 29244 101 + . . scaffold67 GLEAN mRNA 22173 32149 1 - . ID=CGI_10018261; scaffold67 WUBlastX DNA_hAT-Tip100 29223 29591 113 + . . scaffold67 GLEAN mRNA 22173 32149 1 - . ID=CGI_10018261; scaffold43 WUBlastX LINE_RTE-X 393756 394301 173 - . . scaffold43 GLEAN mRNA 380222 414471 0.256408 - . ID=CGI_10021355; scaffold42128 WUBlastX DNA_TcMar-Tc1 12811 12948 78 + . . scaffold42128 GLEAN mRNA 1970 15266 0.99078 + . ID=CGI_10006194; scaffold1264 WUBlastX LINE_L1-Tx1 137531 139060 328 + . . scaffold1264 GLEAN mRNA 129263 151960 0.5 - . ID=CGI_10007176; scaffold1423 WUBlastX DNA_Harbinger 672839 673024 99 + . . scaffold1423 GLEAN mRNA 653919 675880 0.821976 - . ID=CGI_10025436; scaffold911 WUBlastX LTR_Gypsy 94369 94521 82 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX LTR_Gypsy 95656 95802 78 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold43280 WUBlastX LINE_L1-Tx1 111683 112192 253 - . . scaffold43280 GLEAN mRNA 92021 113272 0.543593 + . ID=CGI_10009655; scaffold43664 WUBlastX LINE_RTE-X 213931 214167 71 + . . scaffold43664 GLEAN mRNA 204407 215793 0.656307 - . ID=CGI_10011717; scaffold40832 WUBlastX LINE_RTE-X 82546 82632 22 - . . scaffold40832 GLEAN mRNA 51373 82869 0.350561 + . ID=CGI_10004457; scaffold117 WUBlastX DNA_Harbinger 36689 37099 202 - . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold117 WUBlastX DNA_Harbinger 37591 37782 44 - . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold19 WUBlastX DNA_TcMar-Tc1 152225 152536 190 - . . scaffold19 GLEAN mRNA 151397 159937 0.999878 + . ID=CGI_10010837; scaffold1705 WUBlastX LTR_Gypsy-Troyk 121657 122031 188 - . . scaffold1705 GLEAN mRNA 121657 122031 0.866433 - . ID=CGI_10007472; scaffold19 WUBlastX DNA_TcMar-Tc1 152524 152664 39 - . . scaffold19 GLEAN mRNA 151397 159937 0.999878 + . ID=CGI_10010837; scaffold1785 WUBlastX LINE_RTE-X 22066 22365 87 + . . scaffold1785 GLEAN mRNA 6322 29997 0.294917 - . ID=CGI_10024349; scaffold896 WUBlastX LINE_RTE-X 437616 438044 37 - . . scaffold896 GLEAN mRNA 429849 443777 0.584747 + . ID=CGI_10022849; scaffold896 WUBlastX LINE_RTE-X 437616 438044 37 - . . scaffold896 GLEAN mRNA 434715 450263 0.551142 - . ID=CGI_10022850; scaffold1440 WUBlastX DNA_Sola 188584 189777 232 + . . scaffold1440 GLEAN mRNA 175302 192419 0.333291 + . ID=CGI_10008358; scaffold784 WUBlastX LINE_L1-Tx1 186019 186837 225 + . . scaffold784 GLEAN mRNA 178600 195281 0.744931 - . ID=CGI_10024415; scaffold33980 WUBlastX DNA_hAT-Tip100 3187 3531 172 + . . scaffold33980 GLEAN mRNA 2151 15835 0.664854 + . ID=CGI_10001168; scaffold334 WUBlastX DNA_hAT 323491 324822 401 + . . scaffold334 GLEAN mRNA 323446 325161 0.945369 + . ID=CGI_10025931; scaffold1009 WUBlastX LTR_Ngaro 147562 147879 227 - . . scaffold1009 GLEAN mRNA 143472 160185 0.373363 + . ID=CGI_10028719; scaffold1009 WUBlastX LTR_Ngaro 147878 148510 182 - . . scaffold1009 GLEAN mRNA 143472 160185 0.373363 + . ID=CGI_10028719; scaffold242 WUBlastX LTR_Pao 79099 80460 314 + . . scaffold242 GLEAN mRNA 75832 84666 0.771995 + . ID=CGI_10007083; scaffold1402 WUBlastX LINE_CR1 341836 342000 51 + . . scaffold1402 GLEAN mRNA 333924 347546 0.999947 - . ID=CGI_10017589; C26936 WUBlastX LTR_Gypsy-Gmr1 2271 2831 413 - . . C26936 GLEAN mRNA 652 3529 1 - . ID=CGI_10000336; scaffold38210 WUBlastX LINE_RTE-X 23552 24565 158 + . . scaffold38210 GLEAN mRNA 7747 30035 0.24289 - . ID=CGI_10002673; scaffold595 WUBlastX LTR_Ngaro 90988 91254 170 - . . scaffold595 GLEAN mRNA 66058 94029 0.989948 - . ID=CGI_10005863; scaffold36140 WUBlastX LINE_L2 7974 8993 546 - . . scaffold36140 GLEAN mRNA 6624 23811 0.998174 + . ID=CGI_10001795; scaffold191 WUBlastX LINE_CR1 553023 553178 40 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold70 WUBlastX LINE_L2 612899 613273 42 + . . scaffold70 GLEAN mRNA 605933 624830 0.814164 - . ID=CGI_10024778; scaffold1766 WUBlastX DNA_hAT-hAT5 146082 146255 26 - . . scaffold1766 GLEAN mRNA 123917 148776 0.996199 - . ID=CGI_10006278; scaffold40680 WUBlastX DNA_Harbinger 25006 25263 46 + . . scaffold40680 GLEAN mRNA 16 36776 0.246623 - . ID=CGI_10004353; scaffold90 WUBlastX DNA_Harbinger 270241 270405 39 - . . scaffold90 GLEAN mRNA 265227 282021 0.629226 + . ID=CGI_10015170; scaffold1004 WUBlastX DNA_Kolobok-Hyd 463712 464392 35 - . . scaffold1004 GLEAN mRNA 463295 491476 0.997732 - . ID=CGI_10020781; scaffold115 WUBlastX DNA_TcMar-Marin 624012 624152 38 + . . scaffold115 GLEAN mRNA 617761 631483 0.999676 + . ID=CGI_10021409; scaffold138 WUBlastX LINE_L1 28047 28154 64 - . . scaffold138 GLEAN mRNA 800 34081 0.879441 + . ID=CGI_10008423; scaffold41358 WUBlastX DNA_TcMar-Tc1 111122 111208 36 + . . scaffold41358 GLEAN mRNA 104455 115098 0.650923 - . ID=CGI_10004976; scaffold149 WUBlastX LINE_L1-Tx1 958887 959000 36 - . . scaffold149 GLEAN mRNA 948392 959761 0.932291 - . ID=CGI_10025333; scaffold828 WUBlastX LINE_L2 53549 53971 45 + . . scaffold828 GLEAN mRNA 15085 78014 0.596994 - . ID=CGI_10007364; scaffold698 WUBlastX LINE_CR1-L2 246236 246514 36 - . . scaffold698 GLEAN mRNA 242867 252447 0.999676 + . ID=CGI_10020738; scaffold1024 WUBlastX RC_Helitron 81368 81586 64 - . . scaffold1024 GLEAN mRNA 70811 87216 0.389681 + . ID=CGI_10028519; scaffold41806 WUBlastX LINE_RTE-X 1478 1738 52 + . . scaffold41806 GLEAN mRNA 391 2493 0.999723 - . ID=CGI_10005641; scaffold1528 WUBlastX LINE_RTE-X 40326 40511 53 - . . scaffold1528 GLEAN mRNA 36206 41053 1 - . ID=CGI_10013212; scaffold198 WUBlastX LINE_CR1-L2 1171358 1171429 37 - . . scaffold198 GLEAN mRNA 1155548 1172013 0.535042 + . ID=CGI_10027850; scaffold198 WUBlastX LINE_CR1-L2 1171358 1171429 37 - . . scaffold198 GLEAN mRNA 1169314 1180690 0.99935 - . ID=CGI_10027851; scaffold117 WUBlastX LINE_L2 53687 53989 75 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold1656 WUBlastX LTR_Ngaro 122631 122903 50 - . . scaffold1656 GLEAN mRNA 116802 126372 0.949613 - . ID=CGI_10006145; scaffold852 WUBlastX DNA_IS4EU 51537 51707 74 - . . scaffold852 GLEAN mRNA 46446 54395 0.990384 - . ID=CGI_10012034; scaffold1788 WUBlastX DNA_IS4EU 64680 64763 23 + . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold1788 WUBlastX DNA_IS4EU 65034 65135 63 + . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold1603 WUBlastX RC_Helitron 59714 60229 99 + . . scaffold1603 GLEAN mRNA 44108 68236 0.999997 - . ID=CGI_10012816; scaffold368 WUBlastX DNA_Harbinger 31365 31544 60 + . . scaffold368 GLEAN mRNA 27692 45024 0.754759 - . ID=CGI_10018691; C35068 WUBlastX DNA_Harbinger 13095 13280 78 + . . C35068 GLEAN mRNA 2139 13943 0.995001 + . ID=CGI_10001414; scaffold204 WUBlastX DNA_Harbinger 411588 411800 91 + . . scaffold204 GLEAN mRNA 394042 414406 0.339936 + . ID=CGI_10026106; scaffold705 WUBlastX LTR_Gypsy 318781 318785 110 - . . scaffold705 GLEAN mRNA 315628 318785 0.810949 - . ID=CGI_10015515; scaffold1424 WUBlastX LINE_R1 53883 53963 23 + . . scaffold1424 GLEAN mRNA 53871 54215 0.99939 + . ID=CGI_10005350; scaffold1255 WUBlastX LTR_Gypsy-Cigr 352774 352870 68 - . . scaffold1255 GLEAN mRNA 352774 353274 0.927762 - . ID=CGI_10018079; scaffold39120 WUBlastX LTR_Ngaro 46147 46365 56 - . . scaffold39120 GLEAN mRNA 36514 50111 0.858496 + . ID=CGI_10003188; scaffold39120 WUBlastX LTR_Ngaro 46397 46558 33 - . . scaffold39120 GLEAN mRNA 36514 50111 0.858496 + . ID=CGI_10003188; scaffold601 WUBlastX DNA_IS4EU 851183 851398 36 + . . scaffold601 GLEAN mRNA 851147 851398 1 + . ID=CGI_10026850; scaffold670 WUBlastX LINE_CR1-L2 134387 134704 94 + . . scaffold670 GLEAN mRNA 126176 136910 0.999932 + . ID=CGI_10007410; scaffold1131 WUBlastX DNA_Kolobok 304143 304292 81 + . . scaffold1131 GLEAN mRNA 303691 304307 1 + . ID=CGI_10013506; scaffold257 WUBlastX LINE_RTE-X 319759 319830 40 + . . scaffold257 GLEAN mRNA 306483 324339 0.999073 + . ID=CGI_10027906; scaffold1094 WUBlastX LTR_Ngaro 49071 49259 118 - . . scaffold1094 GLEAN mRNA 39133 55977 0.999676 + . ID=CGI_10021808; scaffold1804 WUBlastX DNA_hAT-Blackja 285923 286309 93 + . . scaffold1804 GLEAN mRNA 280197 286439 0.354697 + . ID=CGI_10013383; scaffold175 WUBlastX LINE_Penelope 329677 330171 94 + . . scaffold175 GLEAN mRNA 321770 332822 0.999994 - . ID=CGI_10021321; scaffold99 WUBlastX DNA_MuDR 240673 240756 31 + . . scaffold99 GLEAN mRNA 235492 241625 0.649382 + . ID=CGI_10021195; scaffold99 WUBlastX DNA_MuDR 241083 241424 75 + . . scaffold99 GLEAN mRNA 235492 241625 0.649382 + . ID=CGI_10021195; scaffold479 WUBlastX LTR_Ngaro 421476 422201 97 + . . scaffold479 GLEAN mRNA 420249 425742 0.99319 + . ID=CGI_10015702; scaffold106 WUBlastX LTR_Gypsy 653521 653661 28 - . . scaffold106 GLEAN mRNA 650785 658770 0.999129 - . ID=CGI_10022052; scaffold298 WUBlastX LTR_Gypsy 281365 281703 147 - . . scaffold298 GLEAN mRNA 275559 284249 0.999682 - . ID=CGI_10018823; scaffold1885 WUBlastX LINE_L1 364632 364898 104 + . . scaffold1885 GLEAN mRNA 350853 371060 0.999501 + . ID=CGI_10013905; scaffold313 WUBlastX LINE_RTE-X 1189761 1189901 66 - . . scaffold313 GLEAN mRNA 1180096 1191800 0.492755 + . ID=CGI_10026643; scaffold1163 WUBlastX LINE_RTE-X 198290 198580 93 - . . scaffold1163 GLEAN mRNA 183718 207332 0.990122 - . ID=CGI_10009351; scaffold86 WUBlastX LINE_L1-Tx1 217685 217849 56 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold86 WUBlastX LINE_L1-Tx1 217917 218036 41 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold354 WUBlastX LINE_L2 489868 490329 119 - . . scaffold354 GLEAN mRNA 486223 493126 0.637462 - . ID=CGI_10025720; scaffold1119 WUBlastX DNA_TcMar-Tc2 162302 163141 141 - . . scaffold1119 GLEAN mRNA 141381 182559 0.993006 - . ID=CGI_10009605; scaffold41816 WUBlastX DNA_Academ 20415 20687 63 + . . scaffold41816 GLEAN mRNA 6032 28025 0.728522 - . ID=CGI_10005647; scaffold980 WUBlastX DNA_Academ 241948 242148 89 - . . scaffold980 GLEAN mRNA 241945 242148 0.518358 - . ID=CGI_10019216; scaffold980 WUBlastX DNA_Academ 242201 242283 89 - . . scaffold980 GLEAN mRNA 242201 242902 0.579788 - . ID=CGI_10019217; scaffold43630 WUBlastX LTR_Gypsy 173986 174753 148 - . . scaffold43630 GLEAN mRNA 172610 245452 0.0301586 + . ID=CGI_10011528; scaffold210 WUBlastX DNA_hAT-Ac 358406 358870 171 - . . scaffold210 GLEAN mRNA 357624 369316 1 + . ID=CGI_10015899; scaffold1221 WUBlastX LINE_RTE-X 303478 303939 128 - . . scaffold1221 GLEAN mRNA 295053 306727 0.999196 + . ID=CGI_10019742; scaffold298 WUBlastX LTR_Gypsy 277708 278682 169 - . . scaffold298 GLEAN mRNA 275559 284249 0.999682 - . ID=CGI_10018823; scaffold90 WUBlastX DNA_Harbinger 270808 271050 76 - . . scaffold90 GLEAN mRNA 265227 282021 0.629226 + . ID=CGI_10015170; scaffold198 WUBlastX DNA_NOF 1329469 1329555 48 - . . scaffold198 GLEAN mRNA 1312239 1337375 0.960179 - . ID=CGI_10027863; scaffold198 WUBlastX DNA_NOF 1330402 1330641 109 - . . scaffold198 GLEAN mRNA 1312239 1337375 0.960179 - . ID=CGI_10027863; scaffold82 WUBlastX LINE_RTE-X 556574 557023 133 - . . scaffold82 GLEAN mRNA 555436 563532 1 - . ID=CGI_10025265; scaffold1247 WUBlastX DNA_TcMar-Tc1 113982 114248 157 + . . scaffold1247 GLEAN mRNA 96036 115392 0.95838 - . ID=CGI_10008945; scaffold498 WUBlastX DNA_En-Spm 113773 115512 1160 - . . scaffold498 GLEAN mRNA 111798 119002 0.999546 - . ID=CGI_10012422; scaffold42 WUBlastX LTR_Ngaro 80430 80753 32 - . . scaffold42 GLEAN mRNA 77522 83143 0.592597 - . ID=CGI_10018905; scaffold1817 WUBlastX LTR_Gypsy-Cigr 24940 28668 1367 + . . scaffold1817 GLEAN mRNA 9897 44966 0.453567 - . ID=CGI_10005250; scaffold86 WUBlastX DNA_Kolobok 152250 152492 118 - . . scaffold86 GLEAN mRNA 141744 153852 0.999675 - . ID=CGI_10028139; scaffold334 WUBlastX LINE_RTE-X 343312 343848 96 + . . scaffold334 GLEAN mRNA 333257 357250 0.999478 + . ID=CGI_10025933; scaffold808 WUBlastX LINE_L1 185603 188719 1048 - . . scaffold808 GLEAN mRNA 163011 189170 0.494982 - . ID=CGI_10019018; scaffold43964 WUBlastX DNA_hAT 130986 131165 90 + . . scaffold43964 GLEAN mRNA 129296 131440 1 + . ID=CGI_10014642; scaffold453 WUBlastX DNA_Harbinger 310838 310996 49 - . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold1899 WUBlastX LINE_RTE-BovB 233535 233627 38 + . . scaffold1899 GLEAN mRNA 227915 236312 0.634371 - . ID=CGI_10013614; scaffold1899 WUBlastX LINE_RTE-BovB 233632 234381 161 + . . scaffold1899 GLEAN mRNA 227915 236312 0.634371 - . ID=CGI_10013614; scaffold829 WUBlastX DNA_TcMar-Pogo 592864 593028 101 - . . scaffold829 GLEAN mRNA 577056 600770 0.812815 + . ID=CGI_10021152; scaffold801 WUBlastX DNA_TcMar-Tc1 633141 633446 164 + . . scaffold801 GLEAN mRNA 629688 677591 0.460193 - . ID=CGI_10024093; scaffold879 WUBlastX LINE_RTE-BovB 95470 97410 1677 + . . scaffold879 GLEAN mRNA 83884 129121 0.946613 - . ID=CGI_10007573; scaffold1679 WUBlastX LTR_Gypsy 31174 32424 47 - . . scaffold1679 GLEAN mRNA 27427 41298 0.999999 - . ID=CGI_10002338; scaffold1885 WUBlastX LINE_CR1-L2 360515 360745 75 - . . scaffold1885 GLEAN mRNA 350853 371060 0.999501 + . ID=CGI_10013905; scaffold1160 WUBlastX LINE_RTE-X 262210 262947 131 + . . scaffold1160 GLEAN mRNA 253181 264437 0.999999 - . ID=CGI_10015353; scaffold1244 WUBlastX LINE_Penelope 571286 572017 166 - . . scaffold1244 GLEAN mRNA 508938 634898 0.0392589 - . ID=CGI_10020838; scaffold286 WUBlastX DNA_Kolobok 208878 209075 60 + . . scaffold286 GLEAN mRNA 207114 209601 0.577193 + . ID=CGI_10015965; scaffold43008 WUBlastX LINE_L1 85037 85351 138 - . . scaffold43008 GLEAN mRNA 78684 87806 0.543465 - . ID=CGI_10008462; scaffold145 WUBlastX DNA_TcMar-Fot1 648857 649141 80 + . . scaffold145 GLEAN mRNA 640130 678599 0.569648 - . ID=CGI_10026560; scaffold40614 WUBlastX LTR_DIRS 64546 64692 37 - . . scaffold40614 GLEAN mRNA 56089 69167 0.972217 + . ID=CGI_10004259; scaffold82 WUBlastX LINE_RTE-X 184363 184626 122 - . . scaffold82 GLEAN mRNA 181182 187437 1 + . ID=CGI_10025244; scaffold1101 WUBlastX LINE_RTE-X 149005 149589 139 - . . scaffold1101 GLEAN mRNA 141921 154245 0.479315 + . ID=CGI_10023014; scaffold41858 WUBlastX LINE_CR1 108590 110326 206 + . . scaffold41858 GLEAN mRNA 107447 123979 1 + . ID=CGI_10005770; scaffold1262 WUBlastX DNA_Kolobok-IS4 511476 511676 64 + . . scaffold1262 GLEAN mRNA 503446 523698 0.999351 - . ID=CGI_10018956; scaffold914 WUBlastX DNA_TcMar-Tc1 256049 256633 262 - . . scaffold914 GLEAN mRNA 255125 272585 0.997448 + . ID=CGI_10018883; scaffold563 WUBlastX LINE_L1 509094 509255 32 + . . scaffold563 GLEAN mRNA 469996 513756 0.653133 + . ID=CGI_10019843; C35172 WUBlastX DNA_En-Spm 2254 3498 417 + . . C35172 GLEAN mRNA 161 6399 0.907032 + . ID=CGI_10001431; scaffold579 WUBlastX LTR_Pao 214779 215618 346 + . . scaffold579 GLEAN mRNA 193436 221323 0.863149 + . ID=CGI_10011264; scaffold317 WUBlastX DNA_hAT-hATw 135603 136250 39 + . . scaffold317 GLEAN mRNA 123249 146317 0.852803 + . ID=CGI_10019345; scaffold1154 WUBlastX LTR_DIRS 330778 331749 514 + . . scaffold1154 GLEAN mRNA 300263 342126 0.0862783 - . ID=CGI_10026162; scaffold41162 WUBlastX LTR_Gypsy-Cigr 88697 89347 315 - . . scaffold41162 GLEAN mRNA 73852 107906 0.526733 + . ID=CGI_10004777; scaffold41162 WUBlastX LTR_Gypsy-Cigr 89332 89649 145 - . . scaffold41162 GLEAN mRNA 73852 107906 0.526733 + . ID=CGI_10004777; scaffold1299 WUBlastX LINE_RTE-BovB 139253 139909 42 - . . scaffold1299 GLEAN mRNA 132868 184987 0.923911 + . ID=CGI_10007586; scaffold42648 WUBlastX LTR_Pao 170521 170718 94 - . . scaffold42648 GLEAN mRNA 167771 174774 0.98388 - . ID=CGI_10007395; scaffold867 WUBlastX DNA_TcMar-Tc1 254820 255548 263 + . . scaffold867 GLEAN mRNA 253182 264678 0.938203 - . ID=CGI_10026215; scaffold867 WUBlastX DNA_TcMar-Tc1 255483 255596 48 + . . scaffold867 GLEAN mRNA 253182 264678 0.938203 - . ID=CGI_10026215; scaffold58 WUBlastX DNA_Kolobok-IS4 398241 398468 27 - . . scaffold58 GLEAN mRNA 395705 399423 0.999985 - . ID=CGI_10023143; scaffold143 WUBlastX LTR_Gypsy 39882 40259 27 - . . scaffold143 GLEAN mRNA 39157 75752 0.728522 + . ID=CGI_10010007; scaffold829 WUBlastX DNA_hAT-Tip100 99518 99745 61 - . . scaffold829 GLEAN mRNA 96076 100192 0.932887 + . ID=CGI_10021140; scaffold32470 WUBlastX LTR_Gypsy 1221 1442 95 - . . scaffold32470 GLEAN mRNA 176 4292 1 + . ID=CGI_10000898; scaffold1149 WUBlastX DNA_hAT-Ac 219947 220219 67 + . . scaffold1149 GLEAN mRNA 215463 220751 0.999395 - . ID=CGI_10023460; scaffold597 WUBlastX LINE_L1 80379 80453 26 + . . scaffold597 GLEAN mRNA 78607 89731 0.999999 - . ID=CGI_10004930; scaffold38438 WUBlastX DNA_TcMar-Marin 54086 54214 48 - . . scaffold38438 GLEAN mRNA 54044 54235 0.618241 - . ID=CGI_10002770; scaffold1480 WUBlastX LINE_R1 160162 160215 20 - . . scaffold1480 GLEAN mRNA 145751 160551 0.693127 - . ID=CGI_10008638; scaffold773 WUBlastX DNA_Maverick 239998 240576 28 - . . scaffold773 GLEAN mRNA 235107 267865 0.138953 - . ID=CGI_10011348; scaffold482 WUBlastX LINE_RTE-X 113198 113401 51 - . . scaffold482 GLEAN mRNA 106791 115709 0.887892 + . ID=CGI_10010996; scaffold1697 WUBlastX LTR_Gypsy-Cigr 12451 13140 41 + . . scaffold1697 GLEAN mRNA 140 13575 0.983491 + . ID=CGI_10007876; scaffold42584 WUBlastX LINE_CR1 100408 100683 62 + . . scaffold42584 GLEAN mRNA 87388 105090 0.998677 + . ID=CGI_10007309; scaffold43130 WUBlastX LINE_CR1-L2 166860 167051 52 + . . scaffold43130 GLEAN mRNA 158411 195443 0.532479 - . ID=CGI_10008964; scaffold368 WUBlastX DNA_IS4EU 89028 89342 46 + . . scaffold368 GLEAN mRNA 78208 92005 0.999415 - . ID=CGI_10018696; scaffold67 WUBlastX DNA_hAT-Tip100 30674 30766 30 + . . scaffold67 GLEAN mRNA 22173 32149 1 - . ID=CGI_10018261; scaffold156 WUBlastX LINE_L2 274820 275056 64 + . . scaffold156 GLEAN mRNA 272710 277708 0.558302 - . ID=CGI_10026489; scaffold116 WUBlastX LTR_Gypsy-Cigr 33800 34009 33 - . . scaffold116 GLEAN mRNA 33800 34222 1 - . ID=CGI_10009410; scaffold19 WUBlastX LTR_Gypsy 141409 141654 27 - . . scaffold19 GLEAN mRNA 112664 148277 0.596648 - . ID=CGI_10010836; scaffold58 WUBlastX DNA_TcMar-Marin 564768 564881 83 - . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; scaffold664 WUBlastX DNA_TcMar-Marin 655894 656010 33 - . . scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold1663 WUBlastX LINE_CR1 109695 109859 21 + . . scaffold1663 GLEAN mRNA 68504 119090 0.88293 - . ID=CGI_10009864; scaffold1000 WUBlastX LINE_CR1 147366 147653 91 + . . scaffold1000 GLEAN mRNA 146750 156759 0.989263 + . ID=CGI_10013075; scaffold1741 WUBlastX DNA_P 815598 815912 82 - . . scaffold1741 GLEAN mRNA 804296 818884 1 - . ID=CGI_10024052; scaffold186 WUBlastX DNA_Kolobok-Hyd 26381 26437 41 + . . scaffold186 GLEAN mRNA 25622 26612 0.366701 + . ID=CGI_10012602; scaffold186 WUBlastX DNA_Kolobok-Hyd 26567 26612 36 + . . scaffold186 GLEAN mRNA 25622 26612 0.366701 + . ID=CGI_10012602; scaffold186 WUBlastX DNA_Kolobok-Hyd 26657 26884 36 + . . scaffold186 GLEAN mRNA 26657 27313 0.617824 + . ID=CGI_10012603; scaffold169 WUBlastX LTR_Copia 632207 632455 21 + . . scaffold169 GLEAN mRNA 628224 637732 0.973288 - . ID=CGI_10022960; scaffold986 WUBlastX DNA_Harbinger 136279 136446 49 + . . scaffold986 GLEAN mRNA 135296 141072 0.877811 + . ID=CGI_10009960; scaffold1836 WUBlastX DNA_Harbinger 1028107 1028274 49 + . . scaffold1836 GLEAN mRNA 1025204 1064430 0.980298 - . ID=CGI_10026321; scaffold43660 WUBlastX LINE_Penelope 47015 47491 56 - . . scaffold43660 GLEAN mRNA 33653 62551 0.969554 - . ID=CGI_10011660; scaffold952 WUBlastX LINE_L1-Tx1 25021 25437 52 + . . scaffold952 GLEAN mRNA 12544 26052 0.999676 + . ID=CGI_10002898; scaffold204 WUBlastX LTR_Ngaro 300059 300184 88 + . . scaffold204 GLEAN mRNA 270844 308042 0.270192 - . ID=CGI_10026102; scaffold38736 WUBlastX DNA_Harbinger 50560 50781 103 + . . scaffold38736 GLEAN mRNA 50218 50844 1 + . ID=CGI_10002944; scaffold1785 WUBlastX DNA_IS4EU 33190 33297 23 - . . scaffold1785 GLEAN mRNA 32641 38261 0.430327 - . ID=CGI_10024350; scaffold290 WUBlastX LTR_Gypsy 552412 552849 95 + . . scaffold290 GLEAN mRNA 545890 556657 0.999676 + . ID=CGI_10018556; scaffold38272 WUBlastX LINE_L1-Tx1 37953 38063 38 + . . scaffold38272 GLEAN mRNA 12040 52169 0.605388 + . ID=CGI_10002702; scaffold301 WUBlastX DNA_TcMar-ISRm1 515236 516081 87 - . . scaffold301 GLEAN mRNA 515134 528114 0.999355 - . ID=CGI_10026723; scaffold1354 WUBlastX LINE_L2 174154 174267 21 - . . scaffold1354 GLEAN mRNA 170031 176711 0.9991 - . ID=CGI_10014934; scaffold120 WUBlastX RC_Helitron 492991 493599 70 + . . scaffold120 GLEAN mRNA 488674 498689 0.732746 + . ID=CGI_10017550; scaffold177 WUBlastX DNA_Harbinger 284677 284724 32 - . . scaffold177 GLEAN mRNA 240974 299351 0.498178 - . ID=CGI_10016064; scaffold177 WUBlastX DNA_Harbinger 284880 284993 73 - . . scaffold177 GLEAN mRNA 240974 299351 0.498178 - . ID=CGI_10016064; scaffold243 WUBlastX LINE_RTE-BovB 108387 108593 118 - . . scaffold243 GLEAN mRNA 107331 122281 0.913043 + . ID=CGI_10006817; scaffold1894 WUBlastX LINE_L1-Tx1 41668 41901 44 - . . scaffold1894 GLEAN mRNA 18177 67015 0.499328 - . ID=CGI_10013334; scaffold461 WUBlastX LTR_Gypsy-Cigr 508443 508961 158 + . . scaffold461 GLEAN mRNA 502998 509730 0.979735 + . ID=CGI_10020117; scaffold1771 WUBlastX DNA_TcMar-Tc2 43160 43573 96 + . . scaffold1771 GLEAN mRNA 24790 43934 0.998608 - . ID=CGI_10004384; scaffold1097 WUBlastX LINE_RTE-BovB 712004 712180 84 + . . scaffold1097 GLEAN mRNA 684510 718767 0.99504 - . ID=CGI_10024542; scaffold1831 WUBlastX LINE_CR1-L2 26318 26701 28 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold544 WUBlastX LTR_DIRS 563682 564251 106 + . . scaffold544 GLEAN mRNA 559869 574687 0.998045 - . ID=CGI_10022574; scaffold109 WUBlastX DNA_TcMar-Tc2 273700 275049 1088 + . . scaffold109 GLEAN mRNA 221861 297851 0.997753 - . ID=CGI_10022112; scaffold433 WUBlastX LTR_Ngaro 337705 338550 107 + . . scaffold433 GLEAN mRNA 321041 347867 0.999675 + . ID=CGI_10027064; scaffold806 WUBlastX LTR_DIRS 14191 14757 112 + . . scaffold806 GLEAN mRNA 6658 18169 0.934338 + . ID=CGI_10004919; scaffold635 WUBlastX LTR_Gypsy 115768 116355 172 - . . scaffold635 GLEAN mRNA 115264 124278 0.98729 - . ID=CGI_10008922; scaffold1138 WUBlastX DNA_En-Spm 274314 275024 397 + . . scaffold1138 GLEAN mRNA 273468 292780 0.221988 + . ID=CGI_10015375; scaffold44 WUBlastX DNA_IS4EU 349346 350083 139 - . . scaffold44 GLEAN mRNA 346940 353357 0.748127 - . ID=CGI_10016836; scaffold40512 WUBlastX DNA_IS4EU 51632 51919 53 + . . scaffold40512 GLEAN mRNA 32163 58255 0.783329 + . ID=CGI_10004193; scaffold1341 WUBlastX LINE_L2 21653 22537 93 - . . scaffold1341 GLEAN mRNA 4451 30218 0.992186 + . ID=CGI_10004662; scaffold145 WUBlastX LINE_RTE-BovB 1138196 1138411 67 - . . scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold481 WUBlastX LTR_Gypsy 1219310 1219873 562 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold165 WUBlastX LTR_Gypsy 111127 111189 22 + . . scaffold165 GLEAN mRNA 100697 128503 0.998921 + . ID=CGI_10015315; scaffold113 WUBlastX LINE_L1-Tx1 612491 616147 1090 - . . scaffold113 GLEAN mRNA 609492 622798 0.993341 - . ID=CGI_10021297; scaffold35180 WUBlastX LINE_L1-Tx1 18136 18543 146 - . . scaffold35180 GLEAN mRNA 904 21932 0.992496 - . ID=CGI_10001433; scaffold35180 WUBlastX LINE_L1-Tx1 18542 19594 593 - . . scaffold35180 GLEAN mRNA 904 21932 0.992496 - . ID=CGI_10001433; scaffold20 WUBlastX LINE_RTE-X 30325 30666 169 + . . scaffold20 GLEAN mRNA 25974 32204 0.614933 - . ID=CGI_10023556; scaffold20 WUBlastX LINE_RTE-X 30325 30666 169 + . . scaffold20 GLEAN mRNA 28495 32289 0.880534 + . ID=CGI_10023557; scaffold53 WUBlastX DNA_Sola 1161084 1161605 230 - . . scaffold53 GLEAN mRNA 1154714 1165146 0.994946 + . ID=CGI_10026702; scaffold942 WUBlastX LINE_Penelope 114725 115438 140 + . . scaffold942 GLEAN mRNA 113666 137722 0.300224 + . ID=CGI_10019154; scaffold854 WUBlastX LINE_L1-Tx1 597843 598088 81 + . . scaffold854 GLEAN mRNA 593945 607422 0.999735 + . ID=CGI_10022261; scaffold433 WUBlastX DNA_PiggyBac 1263332 1263790 180 - . . scaffold433 GLEAN mRNA 1258038 1264095 0.626587 - . ID=CGI_10027122; scaffold410 WUBlastX LTR_DIRS 302352 302960 199 - . . scaffold410 GLEAN mRNA 298599 310174 0.996652 + . ID=CGI_10020635; scaffold272 WUBlastX LINE_L2 45326 45781 157 + . . scaffold272 GLEAN mRNA 32744 62954 0.999882 + . ID=CGI_10003057; scaffold1891 WUBlastX DNA_Harbinger 151134 151250 47 - . . scaffold1891 GLEAN mRNA 133537 158573 0.499706 - . ID=CGI_10008737; scaffold1323 WUBlastX DNA_MuDR 69790 70371 169 - . . scaffold1323 GLEAN mRNA 62759 90642 0.99865 + . ID=CGI_10009082; scaffold1427 WUBlastX LTR_Gypsy 85070 86203 339 + . . scaffold1427 GLEAN mRNA 83286 88793 0.375742 + . ID=CGI_10005230; scaffold242 WUBlastX LTR_Pao 76722 77108 203 + . . scaffold242 GLEAN mRNA 75832 84666 0.771995 + . ID=CGI_10007083; scaffold1189 WUBlastX LINE_L1-Tx1 635437 635676 131 - . . scaffold1189 GLEAN mRNA 632624 639695 1 - . ID=CGI_10023828; scaffold63 WUBlastX DNA_En-Spm 417157 418191 301 + . . scaffold63 GLEAN mRNA 406163 425324 1 - . ID=CGI_10017281; scaffold1262 WUBlastX DNA_Kolobok-IS4 512090 513232 275 + . . scaffold1262 GLEAN mRNA 503446 523698 0.999351 - . ID=CGI_10018956; scaffold1753 WUBlastX LINE_L1-Tx1 266270 266428 50 - . . scaffold1753 GLEAN mRNA 261922 275452 0.949513 - . ID=CGI_10010811; scaffold1512 WUBlastX LTR_Gypsy 108350 109927 375 - . . scaffold1512 GLEAN mRNA 103804 112617 0.999842 - . ID=CGI_10019851; scaffold1862 WUBlastX LINE_L1 189690 190310 248 + . . scaffold1862 GLEAN mRNA 170077 209119 0.953083 - . ID=CGI_10021893; scaffold804 WUBlastX LTR_Gypsy 178849 178965 33 - . . scaffold804 GLEAN mRNA 171131 181585 0.935885 + . ID=CGI_10014858; scaffold804 WUBlastX LTR_Gypsy 179003 180130 373 - . . scaffold804 GLEAN mRNA 171131 181585 0.935885 + . ID=CGI_10014858; scaffold1214 WUBlastX DNA_TcMar-m44 134421 135365 588 - . . scaffold1214 GLEAN mRNA 123562 148526 0.642994 + . ID=CGI_10015477; scaffold57 WUBlastX DNA_hAT 292578 292751 98 - . . scaffold57 GLEAN mRNA 289160 294391 1 - . ID=CGI_10020549; scaffold57 WUBlastX DNA_hAT 291531 291824 150 - . . scaffold57 GLEAN mRNA 289160 294391 1 - . ID=CGI_10020549; scaffold57 WUBlastX DNA_hAT 293606 294391 499 - . . scaffold57 GLEAN mRNA 289160 294391 1 - . ID=CGI_10020549; scaffold39900 WUBlastX DNA_Maverick 64804 65271 287 + . . scaffold39900 GLEAN mRNA 63800 72994 0.885101 + . ID=CGI_10003685; scaffold39900 WUBlastX DNA_Maverick 65436 66224 433 + . . scaffold39900 GLEAN mRNA 63800 72994 0.885101 + . ID=CGI_10003685; scaffold492 WUBlastX LINE_L2 415783 415995 56 + . . scaffold492 GLEAN mRNA 405666 428334 0.820696 - . ID=CGI_10024834; scaffold626 WUBlastX LINE_L2 569125 569214 43 - . . scaffold626 GLEAN mRNA 566143 570342 0.433984 + . ID=CGI_10020005; scaffold419 WUBlastX LINE_CR1 1269979 1270245 60 - . . scaffold419 GLEAN mRNA 1266298 1276946 0.922495 + . ID=CGI_10028402; scaffold143 WUBlastX LINE_L2 194591 195247 27 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold593 WUBlastX LTR_Gypsy-Cigr 500902 500948 31 - . . scaffold593 GLEAN mRNA 500902 502632 0.997973 + . ID=CGI_10022533; scaffold610 WUBlastX LTR_Gypsy-Cigr 564051 564464 68 + . . scaffold610 GLEAN mRNA 561259 570035 0.686247 - . ID=CGI_10021130; scaffold40390 WUBlastX LTR_Gypsy 48526 48657 39 + . . scaffold40390 GLEAN mRNA 46698 56356 0.897316 + . ID=CGI_10004052; scaffold416 WUBlastX DNA_Harbinger 328181 328555 62 + . . scaffold416 GLEAN mRNA 325125 329486 0.999449 + . ID=CGI_10014749; scaffold99 WUBlastX DNA_Harbinger 524280 524489 57 + . . scaffold99 GLEAN mRNA 524280 524582 0.618241 + . ID=CGI_10021210; scaffold42528 WUBlastX LTR_ERV1 144171 144251 44 + . . scaffold42528 GLEAN mRNA 136401 146936 0.889923 + . ID=CGI_10007210; scaffold1449 WUBlastX DNA_Kolobok-Hyd 203791 204075 52 + . . scaffold1449 GLEAN mRNA 203791 204087 0.776794 + . ID=CGI_10010696; scaffold236 WUBlastX LTR_ERV1 37599 37994 41 + . . scaffold236 GLEAN mRNA 37193 44540 0.565289 + . ID=CGI_10018135; scaffold1132 WUBlastX LINE_R1 424141 424203 26 + . . scaffold1132 GLEAN mRNA 413110 426704 0.743295 - . ID=CGI_10023318; scaffold896 WUBlastX LINE_RTE-BovB 438187 438477 31 - . . scaffold896 GLEAN mRNA 429849 443777 0.584747 + . ID=CGI_10022849; scaffold896 WUBlastX LINE_RTE-BovB 438187 438477 31 - . . scaffold896 GLEAN mRNA 434715 450263 0.551142 - . ID=CGI_10022850; scaffold1454 WUBlastX DNA_TcMar-Tc1 8764 9120 37 - . . scaffold1454 GLEAN mRNA 4447 15298 0.999999 - . ID=CGI_10004310; scaffold1052 WUBlastX LINE_L2 75044 75394 87 - . . scaffold1052 GLEAN mRNA 59893 79725 0.988141 - . ID=CGI_10005470; scaffold42236 WUBlastX DNA_hAT 132561 132698 68 + . . scaffold42236 GLEAN mRNA 112501 136266 0.999117 + . ID=CGI_10006406; scaffold1174 WUBlastX DNA_Harbinger 975569 975712 77 + . . scaffold1174 GLEAN mRNA 969973 990165 0.301625 + . ID=CGI_10026076; scaffold1174 WUBlastX DNA_Harbinger 975896 975979 24 + . . scaffold1174 GLEAN mRNA 969973 990165 0.301625 + . ID=CGI_10026076; scaffold601 WUBlastX DNA_IS4EU 851189 851383 76 + . . scaffold601 GLEAN mRNA 851147 851398 1 + . ID=CGI_10026850; scaffold477 WUBlastX LINE_RTE-X 50770 51054 71 - . . scaffold477 GLEAN mRNA 46689 64755 0.855741 + . ID=CGI_10012309; scaffold683 WUBlastX LINE_RTE-X 193324 193476 23 - . . scaffold683 GLEAN mRNA 156724 197942 0.700222 + . ID=CGI_10010360; scaffold385 WUBlastX DNA_TcMar-Tc1 275556 275648 24 + . . scaffold385 GLEAN mRNA 273365 289522 0.998167 - . ID=CGI_10011601; scaffold907 WUBlastX LTR_Pao 12758 12862 22 + . . scaffold907 GLEAN mRNA 12639 12941 0.44891 + . ID=CGI_10003557; scaffold42570 WUBlastX LINE_L2 16581 16922 60 + . . scaffold42570 GLEAN mRNA 8098 32477 0.949085 + . ID=CGI_10007233; scaffold70 WUBlastX LINE_RTE-X 611466 611684 66 + . . scaffold70 GLEAN mRNA 605933 624830 0.814164 - . ID=CGI_10024778; scaffold591 WUBlastX LTR_ERVK 550818 550889 106 + . . scaffold591 GLEAN mRNA 550671 550889 0.638045 + . ID=CGI_10027574; scaffold39268 WUBlastX DNA_MuDR 63809 63976 80 + . . scaffold39268 GLEAN mRNA 61831 68309 0.898511 + . ID=CGI_10003276; scaffold1671 WUBlastX RC_Helitron 226405 226494 36 + . . scaffold1671 GLEAN mRNA 221124 227498 0.633477 + . ID=CGI_10015147; scaffold1322 WUBlastX LTR_Gypsy 270078 270824 76 + . . scaffold1322 GLEAN mRNA 265135 302274 0.499623 + . ID=CGI_10019472; scaffold855 WUBlastX DNA_Maverick 2320 3141 74 + . . scaffold855 GLEAN mRNA 754 11189 0.999983 + . ID=CGI_10001160; scaffold1794 WUBlastX LINE_L1-Tx1 32611 33075 48 - . . scaffold1794 GLEAN mRNA 20538 42560 0.51959 + . ID=CGI_10019565; scaffold461 WUBlastX LTR_Pao 515153 515593 116 + . . scaffold461 GLEAN mRNA 510838 522193 0.712865 + . ID=CGI_10020118; scaffold674 WUBlastX LTR_Ngaro 12178 12813 69 + . . scaffold674 GLEAN mRNA 11758 15607 0.993811 + . ID=CGI_10002488; scaffold41054 WUBlastX DNA_hAT-Tip100 20144 20590 101 - . . scaffold41054 GLEAN mRNA 15508 39181 0.98779 - . ID=CGI_10004673; scaffold1186 WUBlastX LINE_Penelope 240395 240985 55 + . . scaffold1186 GLEAN mRNA 224167 244631 0.351511 - . ID=CGI_10010599; scaffold43726 WUBlastX LINE_RTE-X 268441 268614 83 + . . scaffold43726 GLEAN mRNA 249575 275240 0.78038 + . ID=CGI_10012028; scaffold336 WUBlastX LINE_CR1 216807 217226 89 - . . scaffold336 GLEAN mRNA 208327 217851 1 - . ID=CGI_10012569; scaffold1 WUBlastX DNA_Harbinger 266706 266864 85 - . . scaffold1 GLEAN mRNA 264014 267684 0.995923 + . ID=CGI_10013474; C32578 WUBlastX LINE_L1 9396 9518 98 + . . C32578 GLEAN mRNA 9396 9944 0.649383 + . ID=CGI_10000916; scaffold1532 WUBlastX DNA_Kolobok 587374 587454 24 - . . scaffold1532 GLEAN mRNA 577371 590809 0.942324 - . ID=CGI_10028257; scaffold1532 WUBlastX DNA_Kolobok 587688 587897 92 - . . scaffold1532 GLEAN mRNA 577371 590809 0.942324 - . ID=CGI_10028257; scaffold400 WUBlastX LINE_L1-Tx1 196960 197313 88 - . . scaffold400 GLEAN mRNA 195909 223191 0.813725 - . ID=CGI_10011437; scaffold61 WUBlastX LINE_L2 185250 186302 59 - . . scaffold61 GLEAN mRNA 164819 186758 0.205101 - . ID=CGI_10016346; scaffold678 WUBlastX LTR_Ngaro 89655 89864 47 - . . scaffold678 GLEAN mRNA 85525 97631 0.702112 + . ID=CGI_10026333; scaffold1785 WUBlastX LINE_L2 20431 21000 110 + . . scaffold1785 GLEAN mRNA 6322 29997 0.294917 - . ID=CGI_10024349; scaffold198 WUBlastX DNA_Harbinger 130077 130199 74 - . . scaffold198 GLEAN mRNA 125037 150103 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_Harbinger 130077 130199 74 - . . scaffold198 GLEAN mRNA 129155 148314 0.927276 - . ID=CGI_10027796; scaffold41560 WUBlastX DNA_Kolobok 78385 78627 131 + . . scaffold41560 GLEAN mRNA 78173 78648 1 + . ID=CGI_10005281; scaffold767 WUBlastX LINE_L1-Tx1 280671 280916 85 + . . scaffold767 GLEAN mRNA 267592 288448 0.433091 + . ID=CGI_10014846; scaffold31538 WUBlastX DNA_Maverick 5809 6096 91 - . . scaffold31538 GLEAN mRNA 4012 9466 0.997845 - . ID=CGI_10000765; scaffold59 WUBlastX LTR_Ngaro 71689 73131 948 - . . scaffold59 GLEAN mRNA 68986 78873 0.61656 - . ID=CGI_10011272; scaffold59 WUBlastX LTR_Ngaro 71526 71690 106 - . . scaffold59 GLEAN mRNA 68986 78873 0.61656 - . ID=CGI_10011272; scaffold1717 WUBlastX LINE_L2 64699 65376 74 + . . scaffold1717 GLEAN mRNA 58116 75262 0.980383 + . ID=CGI_10013391; scaffold962 WUBlastX LINE_CR1-L2 747081 747368 64 + . . scaffold962 GLEAN mRNA 737761 749184 0.279681 - . ID=CGI_10027664; scaffold599 WUBlastX LINE_RTE-X 375339 375722 128 - . . scaffold599 GLEAN mRNA 372668 382241 0.88989 - . ID=CGI_10021718; scaffold1597 WUBlastX LINE_RTE-X 72327 72794 112 + . . scaffold1597 GLEAN mRNA 69157 83925 0.999715 - . ID=CGI_10011769; scaffold1066 WUBlastX LTR_Pao 193367 193852 129 - . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold1132 WUBlastX LINE_L1 79394 79897 143 + . . scaffold1132 GLEAN mRNA 47693 94911 0.303068 - . ID=CGI_10023311; scaffold42070 WUBlastX LINE_L1-Tx1 67837 68091 190 - . . scaffold42070 GLEAN mRNA 63527 73059 0.466285 + . ID=CGI_10006078; scaffold30814 WUBlastX LINE_RTE-X 7062 7637 101 - . . scaffold30814 GLEAN mRNA 3529 8232 0.998023 - . ID=CGI_10000671; scaffold1589 WUBlastX LTR_Gypsy 280536 282038 464 - . . scaffold1589 GLEAN mRNA 279757 287553 0.968345 - . ID=CGI_10024110; scaffold1024 WUBlastX DNA_PiggyBac 1076144 1076266 109 - . . scaffold1024 GLEAN mRNA 1070619 1077233 0.9551 - . ID=CGI_10028563; scaffold1024 WUBlastX DNA_PiggyBac 1076265 1076507 90 - . . scaffold1024 GLEAN mRNA 1070619 1077233 0.9551 - . ID=CGI_10028563; scaffold705 WUBlastX LINE_RTE-X 266827 267594 124 + . . scaffold705 GLEAN mRNA 254129 271765 0.501941 + . ID=CGI_10015510; scaffold1186 WUBlastX LTR_Gypsy 210694 210909 64 + . . scaffold1186 GLEAN mRNA 187396 222353 0.578632 + . ID=CGI_10010597; scaffold579 WUBlastX LTR_Pao 213821 214180 38 + . . scaffold579 GLEAN mRNA 193436 221323 0.863149 + . ID=CGI_10011264; scaffold681 WUBlastX LINE_RTE-X 44259 44786 132 - . . scaffold681 GLEAN mRNA 43221 46223 0.777767 + . ID=CGI_10014719; scaffold681 WUBlastX LINE_RTE-X 44259 44786 132 - . . scaffold681 GLEAN mRNA 42450 52406 0.356255 - . ID=CGI_10014718; scaffold1700 WUBlastX DNA_Academ 8019 8993 354 + . . scaffold1700 GLEAN mRNA 3279 10052 0.943718 + . ID=CGI_10012800; scaffold1700 WUBlastX DNA_Academ 8947 9732 390 + . . scaffold1700 GLEAN mRNA 3279 10052 0.943718 + . ID=CGI_10012800; scaffold1700 WUBlastX DNA_Academ 10028 10052 531 + . . scaffold1700 GLEAN mRNA 3279 10052 0.943718 + . ID=CGI_10012800; scaffold1738 WUBlastX LINE_L2 101617 102192 210 + . . scaffold1738 GLEAN mRNA 101617 114566 0.999676 + . ID=CGI_10008970; scaffold1717 WUBlastX LINE_CR1 41925 43280 75 - . . scaffold1717 GLEAN mRNA 33205 46915 0.558386 + . ID=CGI_10013390; scaffold43008 WUBlastX LTR_Gypsy 32769 33134 72 - . . scaffold43008 GLEAN mRNA 18841 33811 0.999674 - . ID=CGI_10008458; scaffold1132 WUBlastX LINE_I 424518 424811 23 + . . scaffold1132 GLEAN mRNA 413110 426704 0.743295 - . ID=CGI_10023318; scaffold1643 WUBlastX LTR_Pao 104920 105513 35 + . . scaffold1643 GLEAN mRNA 104668 107388 0.99993 + . ID=CGI_10008364; scaffold286 WUBlastX DNA_Kolobok 208534 208731 49 + . . scaffold286 GLEAN mRNA 207114 209601 0.577193 + . ID=CGI_10015965; scaffold925 WUBlastX LTR_Gypsy-Cigr 246439 249018 1667 - . . scaffold925 GLEAN mRNA 245750 251543 0.996749 - . ID=CGI_10017422; scaffold578 WUBlastX DNA_Kolobok 23961 24203 51 - . . scaffold578 GLEAN mRNA 19761 26602 0.244564 - . ID=CGI_10015109; scaffold525 WUBlastX DNA_IS4EU 58891 59064 23 + . . scaffold525 GLEAN mRNA 58067 60404 0.665804 + . ID=CGI_10008573; scaffold41660 WUBlastX LINE_RTE-X 80103 81062 161 - . . scaffold41660 GLEAN mRNA 76250 87688 0.999676 + . ID=CGI_10005399; scaffold1670 WUBlastX LINE_CR1 399593 399832 62 + . . scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; scaffold1670 WUBlastX LINE_CR1 399838 399957 46 + . . scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; scaffold1123 WUBlastX LINE_RTE-BovB 13959 14333 134 + . . scaffold1123 GLEAN mRNA 4950 19691 0.554793 + . ID=CGI_10018729; scaffold288 WUBlastX LINE_L1 210528 210878 81 - . . scaffold288 GLEAN mRNA 165543 215886 0.392804 - . ID=CGI_10020660; scaffold925 WUBlastX LTR_DIRS 441575 441886 99 + . . scaffold925 GLEAN mRNA 430454 444048 0.986598 + . ID=CGI_10017428; scaffold689 WUBlastX LTR_Gypsy-Cigr 357056 357790 335 + . . scaffold689 GLEAN mRNA 335137 371615 0.991732 - . ID=CGI_10014831; scaffold43170 WUBlastX LINE_RTE-BovB 28705 29094 280 + . . scaffold43170 GLEAN mRNA 562 49035 0.0513125 - . ID=CGI_10009100; scaffold1329 WUBlastX DNA_hAT 93862 94035 28 - . . scaffold1329 GLEAN mRNA 77218 94406 0.816606 - . ID=CGI_10015782; scaffold632 WUBlastX LINE_L2 512635 512727 64 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold334 WUBlastX LINE_L1-Tx1 1048230 1048769 44 + . . scaffold334 GLEAN mRNA 1033963 1069994 0.961302 - . ID=CGI_10025971; scaffold192 WUBlastX DNA_TcMar-Tc1 673365 673523 33 + . . scaffold192 GLEAN mRNA 655198 676504 0.999922 - . ID=CGI_10023723; scaffold396 WUBlastX LTR_Ngaro 143418 143765 71 - . . scaffold396 GLEAN mRNA 135948 145670 0.499792 + . ID=CGI_10018099; scaffold890 WUBlastX DNA_TcMar-Tc1 83473 84264 369 - . . scaffold890 GLEAN mRNA 81187 101968 1 - . ID=CGI_10014464; scaffold396 WUBlastX DNA_Academ 133558 133911 184 + . . scaffold396 GLEAN mRNA 133558 133911 0.64028 + . ID=CGI_10018098; scaffold43920 WUBlastX LINE_L1-Tx1 329323 329676 145 - . . scaffold43920 GLEAN mRNA 326902 340720 1 - . ID=CGI_10014000; scaffold43920 WUBlastX LINE_L1-Tx1 329600 330397 463 - . . scaffold43920 GLEAN mRNA 326902 340720 1 - . ID=CGI_10014000; scaffold823 WUBlastX LTR_Gypsy 59441 59995 386 + . . scaffold823 GLEAN mRNA 49313 67666 0.999676 - . ID=CGI_10004169; scaffold1448 WUBlastX LTR_Pao 217034 219055 675 + . . scaffold1448 GLEAN mRNA 205659 222787 0.97529 + . ID=CGI_10011856; scaffold1221 WUBlastX LTR_Gypsy 69153 69362 48 - . . scaffold1221 GLEAN mRNA 56411 69596 0.696179 + . ID=CGI_10019728; scaffold271 WUBlastX LINE_CR1-L2 476421 476987 403 + . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold271 WUBlastX LINE_CR1-L2 477516 477794 106 + . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; C35952 WUBlastX LINE_L2 2672 2842 36 + . . C35952 GLEAN mRNA 195 8083 0.544487 + . ID=CGI_10001669; scaffold264 WUBlastX LTR_Gypsy 63160 63261 23 + . . scaffold264 GLEAN mRNA 55806 65386 0.919425 + . ID=CGI_10003463; scaffold432 WUBlastX DNA_hAT 720897 721373 34 - . . scaffold432 GLEAN mRNA 720813 726190 0.996496 - . ID=CGI_10023119; scaffold70 WUBlastX LTR_Gypsy 452751 452999 44 - . . scaffold70 GLEAN mRNA 452424 453119 0.996819 - . ID=CGI_10024770; scaffold39804 WUBlastX LINE_CR1 53835 54164 28 - . . scaffold39804 GLEAN mRNA 45401 55574 0.999999 - . ID=CGI_10003620; scaffold756 WUBlastX DNA_Maverick 241208 241459 75 + . . scaffold756 GLEAN mRNA 233283 244530 0.261655 + . ID=CGI_10016461; scaffold1719 WUBlastX LINE_RTE-X 316221 316313 32 - . . scaffold1719 GLEAN mRNA 297152 319693 0.889105 - . ID=CGI_10014286; scaffold1307 WUBlastX LINE_RTE-X 437551 437934 77 + . . scaffold1307 GLEAN mRNA 426520 439623 0.999027 + . ID=CGI_10023759; scaffold1653 WUBlastX DNA_TcMar-Ant1 29747 30106 89 - . . scaffold1653 GLEAN mRNA 29747 39764 0.980452 - . ID=CGI_10002252; scaffold41766 WUBlastX LTR_Gypsy 32263 32484 93 - . . scaffold41766 GLEAN mRNA 24624 37050 0.752559 - . ID=CGI_10005601; scaffold1564 WUBlastX DNA_hAT-Ac 107842 107934 22 - . . scaffold1564 GLEAN mRNA 80148 112523 0.650997 - . ID=CGI_10005199; scaffold583 WUBlastX LINE_CR1-L2 388016 388180 59 - . . scaffold583 GLEAN mRNA 365612 390201 0.692695 - . ID=CGI_10023621; scaffold149 WUBlastX LINE_L2 233753 233881 43 - . . scaffold149 GLEAN mRNA 233711 233881 0.960172 - . ID=CGI_10025296; scaffold150 WUBlastX LINE_L2 1610519 1610620 32 + . . scaffold150 GLEAN mRNA 1609311 1613969 0.550073 + . ID=CGI_10028691; scaffold1087 WUBlastX LINE_CR1 8727 9248 43 - . . scaffold1087 GLEAN mRNA 1458 16224 0.544547 + . ID=CGI_10001183; scaffold143 WUBlastX LINE_Tad1? 184613 185119 68 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold1532 WUBlastX LINE_RTE-X 975120 975362 85 - . . scaffold1532 GLEAN mRNA 970227 975953 0.953998 - . ID=CGI_10028277; scaffold1179 WUBlastX LINE_L1-Tx1 939636 939917 81 + . . scaffold1179 GLEAN mRNA 936280 947260 0.224969 + . ID=CGI_10027393; scaffold1020 WUBlastX LINE_L2 197591 197992 68 - . . scaffold1020 GLEAN mRNA 186471 206717 0.999666 - . ID=CGI_10012855; scaffold22 WUBlastX DNA_TcMar-Marin 90834 90995 21 + . . scaffold22 GLEAN mRNA 89502 123774 0.856288 - . ID=CGI_10028828; scaffold1382 WUBlastX LINE_RTE-X 139337 139606 86 + . . scaffold1382 GLEAN mRNA 113082 142955 0.812933 - . ID=CGI_10011173; scaffold43182 WUBlastX DNA_TcMar-Tc1 99596 99808 34 + . . scaffold43182 GLEAN mRNA 97443 102816 0.800679 + . ID=CGI_10009200; scaffold42022 WUBlastX LINE_L2 34057 34272 22 + . . scaffold42022 GLEAN mRNA 12310 51169 0.982585 - . ID=CGI_10006049; scaffold756 WUBlastX DNA_IS4EU 342731 342898 44 - . . scaffold756 GLEAN mRNA 341736 353437 0.789635 - . ID=CGI_10016464; scaffold756 WUBlastX DNA_IS4EU 343080 343727 62 - . . scaffold756 GLEAN mRNA 341736 353437 0.789635 - . ID=CGI_10016464; scaffold241 WUBlastX LINE_L1 125817 126035 53 - . . scaffold241 GLEAN mRNA 108603 137659 0.55536 + . ID=CGI_10025092; scaffold1125 WUBlastX DNA_hAT 195933 196046 68 - . . scaffold1125 GLEAN mRNA 189933 228052 0.366465 - . ID=CGI_10012338; scaffold911 WUBlastX DNA_hAT-Tip100 108840 108911 31 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold3 WUBlastX DNA_Kolobok-Hyd 290346 290435 20 - . . scaffold3 GLEAN mRNA 287358 293038 0.456262 - . ID=CGI_10027289; scaffold535 WUBlastX LTR_Copia 556233 556478 28 + . . scaffold535 GLEAN mRNA 556071 562996 0.477113 + . ID=CGI_10020299; scaffold1861 WUBlastX DNA_Crypton 22826 23020 62 + . . scaffold1861 GLEAN mRNA 18142 27610 0.98495 - . ID=CGI_10004668; scaffold38306 WUBlastX DNA_Harbinger 10233 10745 89 - . . scaffold38306 GLEAN mRNA 6272 12349 0.99842 - . ID=CGI_10002711; scaffold1149 WUBlastX LTR_Ngaro 126468 126659 53 + . . scaffold1149 GLEAN mRNA 123566 144809 0.531581 + . ID=CGI_10023452; scaffold43608 WUBlastX DNA_TcMar-Marin 15096 15458 83 + . . scaffold43608 GLEAN mRNA 13222 18761 0.825558 - . ID=CGI_10011388; scaffold1896 WUBlastX LTR_Ngaro 483439 483903 68 + . . scaffold1896 GLEAN mRNA 482993 491454 0.999947 + . ID=CGI_10019652; scaffold286 WUBlastX LTR_Gypsy 183216 183932 129 - . . scaffold286 GLEAN mRNA 182912 187198 0.775448 - . ID=CGI_10015964; scaffold252 WUBlastX DNA_MuDR 93123 93467 101 - . . scaffold252 GLEAN mRNA 89598 102247 0.999676 + . ID=CGI_10010762; scaffold1024 WUBlastX DNA_TcMar-Tc1 223160 223306 107 - . . scaffold1024 GLEAN mRNA 191784 246938 0.99909 + . ID=CGI_10028528; scaffold784 WUBlastX LINE_L2 624445 624507 32 - . . scaffold784 GLEAN mRNA 624445 639860 0.999415 + . ID=CGI_10024437; scaffold784 WUBlastX LINE_L2 624519 624824 90 - . . scaffold784 GLEAN mRNA 624445 639860 0.999415 + . ID=CGI_10024437; scaffold42584 WUBlastX DNA_Crypton 95489 95995 71 - . . scaffold42584 GLEAN mRNA 87388 105090 0.998677 + . ID=CGI_10007309; scaffold42584 WUBlastX DNA_Crypton 96465 97043 71 - . . scaffold42584 GLEAN mRNA 87388 105090 0.998677 + . ID=CGI_10007309; scaffold660 WUBlastX LINE_RTE-X 107232 107825 30 + . . scaffold660 GLEAN mRNA 98549 108257 0.999675 - . ID=CGI_10013750; scaffold42598 WUBlastX LINE_RTE-X 52516 53160 346 - . . scaffold42598 GLEAN mRNA 51303 78059 0.0124996 + . ID=CGI_10007333; scaffold42598 WUBlastX LINE_RTE-X 53232 54407 626 - . . scaffold42598 GLEAN mRNA 51303 78059 0.0124996 + . ID=CGI_10007333; scaffold36202 WUBlastX LTR_Ngaro 20566 20757 34 - . . scaffold36202 GLEAN mRNA 3245 23503 0.999232 + . ID=CGI_10001812; scaffold674 WUBlastX LTR_Ngaro 12160 12567 182 + . . scaffold674 GLEAN mRNA 11758 15607 0.993811 + . ID=CGI_10002488; scaffold1551 WUBlastX LTR_Ngaro 72708 73511 147 + . . scaffold1551 GLEAN mRNA 48041 86336 0.263167 + . ID=CGI_10011471; scaffold40680 WUBlastX DNA_TcMar-Tc1 11478 11777 155 + . . scaffold40680 GLEAN mRNA 16 36776 0.246623 - . ID=CGI_10004353; scaffold934 WUBlastX LTR_Ngaro 407005 407682 182 + . . scaffold934 GLEAN mRNA 385356 409492 0.99982 + . ID=CGI_10015451; scaffold1097 WUBlastX LINE_RTE-X 797282 797473 30 + . . scaffold1097 GLEAN mRNA 796138 800546 1 + . ID=CGI_10024550; scaffold1097 WUBlastX LINE_RTE-X 797519 797710 30 + . . scaffold1097 GLEAN mRNA 796138 800546 1 + . ID=CGI_10024550; scaffold39268 WUBlastX LINE_L2 18870 19376 37 + . . scaffold39268 GLEAN mRNA 16420 27530 0.768779 - . ID=CGI_10003274; scaffold925 WUBlastX LTR_DIRS 441891 442487 27 + . . scaffold925 GLEAN mRNA 430454 444048 0.986598 + . ID=CGI_10017428; scaffold41560 WUBlastX LINE_RTE-X 109083 109541 111 + . . scaffold41560 GLEAN mRNA 106439 114729 1 + . ID=CGI_10005285; scaffold454 WUBlastX LINE_L2 98073 98726 501 - . . scaffold454 GLEAN mRNA 93341 108889 0.996665 - . ID=CGI_10011629; scaffold454 WUBlastX LINE_L2 98723 99685 515 - . . scaffold454 GLEAN mRNA 93341 108889 0.996665 - . ID=CGI_10011629; scaffold454 WUBlastX LINE_L2 99589 100530 301 - . . scaffold454 GLEAN mRNA 93341 108889 0.996665 - . ID=CGI_10011629; scaffold39974 WUBlastX LTR_Ngaro 68959 69642 147 + . . scaffold39974 GLEAN mRNA 67732 80297 0.969362 + . ID=CGI_10003760; scaffold43562 WUBlastX DNA_TcMar-Tc1 168745 169059 98 + . . scaffold43562 GLEAN mRNA 166638 176461 0.999676 + . ID=CGI_10011038; scaffold43562 WUBlastX DNA_TcMar-Tc1 168745 169059 98 + . . scaffold43562 GLEAN mRNA 156935 180007 0.944081 - . ID=CGI_10011037; scaffold43562 WUBlastX DNA_TcMar-Tc1 169062 169355 56 + . . scaffold43562 GLEAN mRNA 166638 176461 0.999676 + . ID=CGI_10011038; scaffold43562 WUBlastX DNA_TcMar-Tc1 169062 169355 56 + . . scaffold43562 GLEAN mRNA 156935 180007 0.944081 - . ID=CGI_10011037; scaffold630 WUBlastX LINE_RTE-X 85669 86178 101 + . . scaffold630 GLEAN mRNA 80549 90707 0.970045 - . ID=CGI_10018325; scaffold43920 WUBlastX LINE_L1 329678 330535 207 - . . scaffold43920 GLEAN mRNA 326902 340720 1 - . ID=CGI_10014000; scaffold1267 WUBlastX LINE_RTE-X 1044637 1045167 102 + . . scaffold1267 GLEAN mRNA 1030598 1050254 0.995555 + . ID=CGI_10025181; scaffold43708 WUBlastX LINE_L2 238080 238511 201 - . . scaffold43708 GLEAN mRNA 223509 253864 0.998643 + . ID=CGI_10011974; scaffold1551 WUBlastX LTR_Ngaro 76018 76131 24 + . . scaffold1551 GLEAN mRNA 48041 86336 0.263167 + . ID=CGI_10011471; scaffold335 WUBlastX LTR_DIRS 51229 51369 46 - . . scaffold335 GLEAN mRNA 36330 53474 0.791399 - . ID=CGI_10017083; scaffold165 WUBlastX LINE_RTE-X 33370 33930 126 + . . scaffold165 GLEAN mRNA 33307 33933 1 + . ID=CGI_10015309; scaffold165 WUBlastX LINE_RTE-X 33915 33933 67 + . . scaffold165 GLEAN mRNA 33307 33933 1 + . ID=CGI_10015309; scaffold1863 WUBlastX DNA_hAT-hATw 258705 259100 112 + . . scaffold1863 GLEAN mRNA 253566 292141 0.240564 - . ID=CGI_10016692; scaffold1896 WUBlastX LTR_Ngaro 486237 486332 25 + . . scaffold1896 GLEAN mRNA 482993 491454 0.999947 + . ID=CGI_10019652; scaffold393 WUBlastX LINE_RTE-BovB 1043487 1043588 24 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold36462 WUBlastX LINE_RTE-X 19543 20247 148 - . . scaffold36462 GLEAN mRNA 15214 26775 0.999351 - . ID=CGI_10001929; scaffold59 WUBlastX RC_Helitron 239331 239636 74 + . . scaffold59 GLEAN mRNA 230821 243525 0.988711 - . ID=CGI_10011278; scaffold1262 WUBlastX DNA_IS4EU 511314 511739 52 + . . scaffold1262 GLEAN mRNA 503446 523698 0.999351 - . ID=CGI_10018956; scaffold347 WUBlastX LINE_CR1 129100 129528 82 + . . scaffold347 GLEAN mRNA 127096 135007 0.556255 - . ID=CGI_10021779; scaffold191 WUBlastX LINE_RTE-X 554505 555029 196 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold305 WUBlastX LINE_L1-Tx1 141235 141339 24 + . . scaffold305 GLEAN mRNA 133464 157357 0.544675 - . ID=CGI_10019118; scaffold1080 WUBlastX DNA_En-Spm 262475 263020 169 - . . scaffold1080 GLEAN mRNA 255570 275608 0.591325 - . ID=CGI_10012678; scaffold38292 WUBlastX LTR_Ngaro 36200 36442 43 - . . scaffold38292 GLEAN mRNA 26899 37380 0.771739 - . ID=CGI_10002691; scaffold510 WUBlastX LTR_Ngaro 169019 169984 291 - . . scaffold510 GLEAN mRNA 163291 175111 0.785549 + . ID=CGI_10013769; scaffold410 WUBlastX LINE_L2 265574 265651 22 + . . scaffold410 GLEAN mRNA 261101 270903 0.399222 + . ID=CGI_10020632; scaffold42656 WUBlastX LINE_L1 99827 100510 223 + . . scaffold42656 GLEAN mRNA 97324 103656 1 - . ID=CGI_10007415; scaffold42648 WUBlastX LTR_Gypsy 169155 169568 409 - . . scaffold42648 GLEAN mRNA 167771 174774 0.98388 - . ID=CGI_10007395; scaffold534 WUBlastX LTR_Gypsy 67262 67864 341 - . . scaffold534 GLEAN mRNA 66095 75550 0.716363 + . ID=CGI_10005164; scaffold934 WUBlastX LTR_Ngaro 408782 408958 88 + . . scaffold934 GLEAN mRNA 385356 409492 0.99982 + . ID=CGI_10015451; scaffold230 WUBlastX LTR_DIRS 216185 217171 474 - . . scaffold230 GLEAN mRNA 178498 220276 0.270873 - . ID=CGI_10011252; C31096 WUBlastX LTR_Ngaro 5513 5776 151 - . . C31096 GLEAN mRNA 4535 6700 0.999978 - . ID=CGI_10000705; scaffold591 WUBlastX DNA_TcMar-Tc1 287221 287718 151 + . . scaffold591 GLEAN mRNA 266952 289677 0.460588 - . ID=CGI_10027562; scaffold591 WUBlastX DNA_TcMar-Tc1 287726 288232 340 + . . scaffold591 GLEAN mRNA 266952 289677 0.460588 - . ID=CGI_10027562; scaffold743 WUBlastX LINE_RTE-X 107342 107767 221 - . . scaffold743 GLEAN mRNA 83791 109134 0.449406 + . ID=CGI_10008614; scaffold210 WUBlastX LTR_Ngaro 224170 224676 389 + . . scaffold210 GLEAN mRNA 223042 231005 0.552757 + . ID=CGI_10015889; scaffold210 WUBlastX LTR_Ngaro 225153 225224 23 + . . scaffold210 GLEAN mRNA 223042 231005 0.552757 + . ID=CGI_10015889; scaffold631 WUBlastX LINE_CR1-L2 132599 133069 43 - . . scaffold631 GLEAN mRNA 131392 145592 0.831917 - . ID=CGI_10014172; scaffold634 WUBlastX LTR_Gypsy 14117 14698 54 - . . scaffold634 GLEAN mRNA 13613 16152 0.502171 - . ID=CGI_10004699; scaffold634 WUBlastX LTR_Gypsy 14117 14698 54 - . . scaffold634 GLEAN mRNA 12476 30002 0.999899 + . ID=CGI_10004698; scaffold481 WUBlastX DNA_TcMar-ISRm1 1038033 1038278 33 - . . scaffold481 GLEAN mRNA 1037973 1041355 0.978909 - . ID=CGI_10027258; scaffold42604 WUBlastX LTR_DIRS 29126 29245 54 + . . scaffold42604 GLEAN mRNA 28580 37433 1 + . ID=CGI_10007312; scaffold922 WUBlastX DNA_Harbinger 93484 94032 55 - . . scaffold922 GLEAN mRNA 65021 94381 0.690826 - . ID=CGI_10005662; scaffold1093 WUBlastX LINE_Penelope 405408 405659 61 - . . scaffold1093 GLEAN mRNA 404049 410721 0.987785 + . ID=CGI_10019807; scaffold141 WUBlastX LINE_L1 40123 40971 25 - . . scaffold141 GLEAN mRNA 34895 61533 0.989288 + . ID=CGI_10006580; scaffold290 WUBlastX LINE_RTE-X 185610 185699 24 + . . scaffold290 GLEAN mRNA 184166 208505 0.688957 - . ID=CGI_10018539; scaffold175 WUBlastX LINE_RTE-X 309251 309415 71 + . . scaffold175 GLEAN mRNA 302857 315268 1 + . ID=CGI_10021318; scaffold593 WUBlastX LINE_RTE-BovB 483435 483629 58 - . . scaffold593 GLEAN mRNA 482551 496845 0.997605 + . ID=CGI_10022532; scaffold1588 WUBlastX LINE_L1? 74421 74927 22 + . . scaffold1588 GLEAN mRNA 56027 117187 0.840099 - . ID=CGI_10014772; scaffold35988 WUBlastX DNA_Maverick 26179 26325 66 - . . scaffold35988 GLEAN mRNA 25841 29038 0.999996 - . ID=CGI_10001701; scaffold1858 WUBlastX LINE_L1 121974 122357 32 - . . scaffold1858 GLEAN mRNA 114362 126826 0.999351 - . ID=CGI_10010447; scaffold42770 WUBlastX LINE_L1-Tx1 16979 17152 40 - . . scaffold42770 GLEAN mRNA 14131 34729 0.562742 - . ID=CGI_10007687; scaffold621 WUBlastX LTR_DIRS 360825 360995 52 - . . scaffold621 GLEAN mRNA 360060 382748 0.996965 - . ID=CGI_10017688; scaffold705 WUBlastX LINE_Penelope 344995 345267 56 - . . scaffold705 GLEAN mRNA 340127 351838 0.495675 + . ID=CGI_10015517; scaffold149 WUBlastX LINE_L1-Tx1 347409 347561 24 - . . scaffold149 GLEAN mRNA 308246 356402 0.217101 + . ID=CGI_10025300; scaffold168 WUBlastX DNA_MuDR 178971 179180 56 - . . scaffold168 GLEAN mRNA 178276 183101 0.805771 - . ID=CGI_10025586; scaffold117 WUBlastX LINE_L2 53615 53998 57 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold866 WUBlastX DNA_TcMar-Tc2 47602 47970 89 + . . scaffold866 GLEAN mRNA 47434 48000 0.6496 + . ID=CGI_10004742; scaffold481 WUBlastX DNA_hAT-Tip100 1054023 1054388 85 + . . scaffold481 GLEAN mRNA 1047969 1057631 0.5 - . ID=CGI_10027259; scaffold922 WUBlastX LINE_CR1-L2 86966 87169 77 - . . scaffold922 GLEAN mRNA 65021 94381 0.690826 - . ID=CGI_10005662; scaffold1009 WUBlastX DNA_IS4EU 430368 430664 83 + . . scaffold1009 GLEAN mRNA 430368 431934 1 + . ID=CGI_10028733; scaffold419 WUBlastX DNA_IS4EU 191225 191440 54 - . . scaffold419 GLEAN mRNA 187518 193297 1 - . ID=CGI_10028330; scaffold481 WUBlastX DNA_Sola 1213639 1214187 38 + . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold363 WUBlastX DNA_Academ 109059 109349 49 - . . scaffold363 GLEAN mRNA 95165 111779 0.789891 - . ID=CGI_10019289; scaffold43146 WUBlastX LINE_L1 196277 196303 23 + . . scaffold43146 GLEAN mRNA 193579 199513 0.963019 - . ID=CGI_10009047; scaffold1408 WUBlastX LINE_RTE-X 3606 4085 22 - . . scaffold1408 GLEAN mRNA 1075 10794 0.650712 + . ID=CGI_10000933; scaffold39804 WUBlastX LINE_L1-Tx1 17767 18012 67 - . . scaffold39804 GLEAN mRNA 15936 20719 1 + . ID=CGI_10003618; scaffold1659 WUBlastX DNA_Harbinger 6877 7077 90 + . . scaffold1659 GLEAN mRNA 4365 18372 0.650917 + . ID=CGI_10001326; scaffold424 WUBlastX DNA_Kolobok 125093 125746 51 - . . scaffold424 GLEAN mRNA 124459 130627 0.999672 - . ID=CGI_10014354; scaffold482 WUBlastX LINE_RTE-X 113412 113603 27 - . . scaffold482 GLEAN mRNA 106791 115709 0.887892 + . ID=CGI_10010996; scaffold12 WUBlastX LTR_Gypsy 292114 292296 39 - . . scaffold12 GLEAN mRNA 290334 319375 0.793549 - . ID=CGI_10018039; scaffold619 WUBlastX LTR_Gypsy 1083472 1083654 39 - . . scaffold619 GLEAN mRNA 1081692 1094410 0.999676 - . ID=CGI_10025803; scaffold962 WUBlastX LINE_CR1-L2 1087901 1088092 63 + . . scaffold962 GLEAN mRNA 1078349 1089726 1 - . ID=CGI_10027683; scaffold274 WUBlastX DNA_En-Spm 53929 54348 25 - . . scaffold274 GLEAN mRNA 47250 68838 0.971857 - . ID=CGI_10017009; scaffold43064 WUBlastX DNA_Harbinger 51393 51764 98 - . . scaffold43064 GLEAN mRNA 50628 70232 0.808133 - . ID=CGI_10008627; scaffold696 WUBlastX LINE_RTE-X 11510 12019 74 + . . scaffold696 GLEAN mRNA 7653 15168 0.999968 + . ID=CGI_10003719; scaffold54 WUBlastX LTR_Gypsy-Cigr 79803 80291 151 + . . scaffold54 GLEAN mRNA 79485 84388 0.939929 + . ID=CGI_10023654; C34856 WUBlastX LTR_Gypsy 7723 7962 53 - . . C34856 GLEAN mRNA 131 10544 0.998639 + . ID=CGI_10001362; scaffold1532 WUBlastX LTR_Ngaro 1134217 1134363 45 - . . scaffold1532 GLEAN mRNA 1127066 1152811 0.992288 + . ID=CGI_10028283; scaffold1518 WUBlastX LTR_DIRS 467730 467927 106 - . . scaffold1518 GLEAN mRNA 454061 469419 0.622487 + . ID=CGI_10017815; scaffold1366 WUBlastX DNA_Crypton 163988 164344 122 - . . scaffold1366 GLEAN mRNA 163589 176739 0.942246 + . ID=CGI_10012296; scaffold143 WUBlastX LINE_L1-Tx1 193162 193410 154 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold1235 WUBlastX LINE_L1-Tx1 32897 33454 73 + . . scaffold1235 GLEAN mRNA 16837 34725 0.738057 - . ID=CGI_10011828; scaffold1872 WUBlastX LINE_RTE-X 97629 97961 99 - . . scaffold1872 GLEAN mRNA 81130 113506 0.586599 + . ID=CGI_10007184; scaffold1863 WUBlastX LINE_RTE-X 308920 309339 88 + . . scaffold1863 GLEAN mRNA 292710 321956 0.398552 - . ID=CGI_10016693; scaffold43708 WUBlastX LINE_RTE-X 130729 132540 932 - . . scaffold43708 GLEAN mRNA 129367 163757 0.948572 + . ID=CGI_10011970; scaffold1866 WUBlastX LINE_CR1 205960 206106 34 + . . scaffold1866 GLEAN mRNA 197037 209666 0.769721 - . ID=CGI_10017910; scaffold41346 WUBlastX DNA_TcMar-Marin 17688 18167 133 - . . scaffold41346 GLEAN mRNA 15464 31699 0.862252 + . ID=CGI_10004998; scaffold1663 WUBlastX LINE_RTE-X 17800 18027 52 + . . scaffold1663 GLEAN mRNA 14275 33810 0.998969 - . ID=CGI_10009863; scaffold461 WUBlastX LINE_L2 293061 293318 156 - . . scaffold461 GLEAN mRNA 287176 297048 0.67711 - . ID=CGI_10020108; scaffold789 WUBlastX LINE_CR1 452887 453750 576 + . . scaffold789 GLEAN mRNA 449746 456527 1 + . ID=CGI_10017205; scaffold1799 WUBlastX LTR_Ngaro 57855 58787 67 - . . scaffold1799 GLEAN mRNA 46929 66946 0.999949 - . ID=CGI_10003631; scaffold41380 WUBlastX LINE_RTE-BovB 66654 66746 41 - . . scaffold41380 GLEAN mRNA 65148 69310 0.636303 + . ID=CGI_10005041; scaffold41380 WUBlastX LINE_RTE-BovB 68021 68089 31 - . . scaffold41380 GLEAN mRNA 65148 69310 0.636303 + . ID=CGI_10005041; scaffold1767 WUBlastX LINE_RTE-BovB 93098 93199 23 + . . scaffold1767 GLEAN mRNA 93032 98652 0.99967 + . ID=CGI_10016907; scaffold242 WUBlastX LTR_Pao 79405 80487 992 + . . scaffold242 GLEAN mRNA 75832 84666 0.771995 + . ID=CGI_10007083; scaffold412 WUBlastX LINE_L1-Tx1 146273 147334 661 + . . scaffold412 GLEAN mRNA 141227 160730 0.499998 - . ID=CGI_10018560; scaffold412 WUBlastX LINE_L1-Tx1 147693 148022 72 + . . scaffold412 GLEAN mRNA 141227 160730 0.499998 - . ID=CGI_10018560; scaffold772 WUBlastX DNA_TcMar-Tc1 174656 175300 181 - . . scaffold772 GLEAN mRNA 173305 179319 1 + . ID=CGI_10016584; scaffold1186 WUBlastX DNA_Crypton 243848 244318 69 - . . scaffold1186 GLEAN mRNA 224167 244631 0.351511 - . ID=CGI_10010599; scaffold43302 WUBlastX DNA_Kolobok-IS4 15401 15583 24 + . . scaffold43302 GLEAN mRNA 6372 24073 0.277786 - . ID=CGI_10009755; scaffold1703 WUBlastX LINE_RTE-X 472323 472892 181 + . . scaffold1703 GLEAN mRNA 460683 476446 0.999324 - . ID=CGI_10023062; scaffold43076 WUBlastX LTR_Gypsy 188919 189164 73 - . . scaffold43076 GLEAN mRNA 177922 191367 0.98946 - . ID=CGI_10008769; scaffold43076 WUBlastX LTR_Gypsy 188919 189164 73 - . . scaffold43076 GLEAN mRNA 186716 211039 0.795025 + . ID=CGI_10008770; scaffold1249 WUBlastX LINE_DRE 127868 127942 23 + . . scaffold1249 GLEAN mRNA 124551 131714 0.558382 + . ID=CGI_10019051; scaffold1882 WUBlastX LTR_DIRS 148929 149618 156 - . . scaffold1882 GLEAN mRNA 139430 150969 0.999129 + . ID=CGI_10010506; scaffold143 WUBlastX LTR_Gypsy 73259 75634 2051 + . . scaffold143 GLEAN mRNA 39157 75752 0.728522 + . ID=CGI_10010007; scaffold794 WUBlastX LTR_Gypsy 280819 281007 44 + . . scaffold794 GLEAN mRNA 271227 282643 0.491343 - . ID=CGI_10017153; scaffold525 WUBlastX DNA_Kolobok-IS4 59853 60392 269 + . . scaffold525 GLEAN mRNA 58067 60404 0.665804 + . ID=CGI_10008573; scaffold1036 WUBlastX DNA_Maverick 596872 596991 68 + . . scaffold1036 GLEAN mRNA 594409 600469 0.995654 - . ID=CGI_10019975; scaffold40836 WUBlastX LINE_RTE-X 86542 86949 205 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold40836 WUBlastX LINE_RTE-X 87760 87981 20 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold1179 WUBlastX DNA_Harbinger 17090 17311 68 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold1179 WUBlastX DNA_Harbinger 18342 18506 151 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold150 WUBlastX LTR_Pao 441864 442571 336 + . . scaffold150 GLEAN mRNA 440940 442586 0.995484 + . ID=CGI_10028609; scaffold209 WUBlastX LTR_DIRS 252999 253778 119 + . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX LTR_DIRS 253767 254000 110 + . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX LTR_DIRS 254000 254143 33 + . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold117 WUBlastX LINE_CR1 51710 52060 253 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold1670 WUBlastX LINE_CR1 399043 399291 60 + . . scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; scaffold43210 WUBlastX DNA_TcMar-Tc1 190706 190918 53 + . . scaffold43210 GLEAN mRNA 171001 198787 0.693179 - . ID=CGI_10009448; scaffold1862 WUBlastX LINE_L1-Tx1 190181 190837 308 + . . scaffold1862 GLEAN mRNA 170077 209119 0.953083 - . ID=CGI_10021893; scaffold1532 WUBlastX LTR_Gypsy 1112145 1112501 81 - . . scaffold1532 GLEAN mRNA 1112130 1112501 0.979648 - . ID=CGI_10028281; scaffold143 WUBlastX LINE_L1-Tx1 211939 212289 78 - . . scaffold143 GLEAN mRNA 211939 221171 0.564856 - . ID=CGI_10010016; scaffold598 WUBlastX LTR_Ngaro 3064 3966 416 + . . scaffold598 GLEAN mRNA 1303 4771 0.992797 + . ID=CGI_10001778; scaffold269 WUBlastX LTR_Ngaro 198354 199337 466 - . . scaffold269 GLEAN mRNA 192453 200699 0.999993 + . ID=CGI_10018996; scaffold338 WUBlastX DNA_Academ 258409 258930 121 + . . scaffold338 GLEAN mRNA 258409 258933 0.999999 + . ID=CGI_10011189; scaffold413 WUBlastX LINE_L2 737068 737349 101 + . . scaffold413 GLEAN mRNA 729457 747893 0.897312 - . ID=CGI_10022826; scaffold905 WUBlastX LINE_L1 5787 6419 30 + . . scaffold905 GLEAN mRNA 3174 14725 0.840832 + . ID=CGI_10004338; scaffold678 WUBlastX DNA_Harbinger 746555 746917 274 - . . scaffold678 GLEAN mRNA 740088 752113 0.995705 - . ID=CGI_10026377; scaffold678 WUBlastX DNA_Harbinger 746555 746917 274 - . . scaffold678 GLEAN mRNA 742489 752098 0.987721 + . ID=CGI_10026378; scaffold678 WUBlastX DNA_Harbinger 747761 747919 111 - . . scaffold678 GLEAN mRNA 740088 752113 0.995705 - . ID=CGI_10026377; scaffold678 WUBlastX DNA_Harbinger 747761 747919 111 - . . scaffold678 GLEAN mRNA 742489 752098 0.987721 + . ID=CGI_10026378; scaffold37900 WUBlastX DNA_IS4EU 29448 30353 436 + . . scaffold37900 GLEAN mRNA 13260 48286 0.694403 - . ID=CGI_10002507; scaffold471 WUBlastX DNA_IS4EU 325404 326162 469 + . . scaffold471 GLEAN mRNA 325188 326174 0.636168 + . ID=CGI_10027009; scaffold1888 WUBlastX LINE_RTE-X 77295 78065 175 + . . scaffold1888 GLEAN mRNA 63277 86416 0.994729 - . ID=CGI_10013295; scaffold94 WUBlastX LTR_Gypsy 66667 66840 92 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold36906 WUBlastX LTR_DIRS 16256 17179 416 - . . scaffold36906 GLEAN mRNA 239 18767 0.841273 + . ID=CGI_10002185; scaffold36906 WUBlastX LTR_DIRS 17236 17844 428 - . . scaffold36906 GLEAN mRNA 239 18767 0.841273 + . ID=CGI_10002185; scaffold22 WUBlastX DNA_TcMar-Fot1 1863538 1863687 48 + . . scaffold22 GLEAN mRNA 1863347 1863687 0.647996 + . ID=CGI_10028937; scaffold22 WUBlastX DNA_TcMar-Fot1 1863760 1863921 48 + . . scaffold22 GLEAN mRNA 1863760 1864161 0.544455 + . ID=CGI_10028938; scaffold917 WUBlastX DNA_Harbinger 154683 154859 48 + . . scaffold917 GLEAN mRNA 150992 179733 0.207364 - . ID=CGI_10011084; scaffold298 WUBlastX DNA_IS4EU 451468 451968 34 + . . scaffold298 GLEAN mRNA 451450 453005 0.901953 + . ID=CGI_10018832; scaffold298 WUBlastX DNA_IS4EU 452298 452423 24 + . . scaffold298 GLEAN mRNA 451450 453005 0.901953 + . ID=CGI_10018832; scaffold1898 WUBlastX DNA_hAT-Ac 53180 53332 49 - . . scaffold1898 GLEAN mRNA 46863 55384 1 + . ID=CGI_10012206; scaffold1898 WUBlastX DNA_hAT-Ac 53180 53332 49 - . . scaffold1898 GLEAN mRNA 51712 80901 0.544574 - . ID=CGI_10012207; scaffold42236 WUBlastX LINE_L1 20969 21355 34 + . . scaffold42236 GLEAN mRNA 20606 22294 0.783967 + . ID=CGI_10006398; scaffold42236 WUBlastX LINE_L1 20969 21355 34 + . . scaffold42236 GLEAN mRNA 12895 32747 0.500069 - . ID=CGI_10006397; scaffold260 WUBlastX LINE_L2 62702 62884 56 + . . scaffold260 GLEAN mRNA 48314 65715 0.848653 - . ID=CGI_10003729; scaffold630 WUBlastX LINE_L2 352561 352818 38 - . . scaffold630 GLEAN mRNA 340806 353631 0.861539 - . ID=CGI_10018332; scaffold1730 WUBlastX DNA_Maverick 115876 116022 23 + . . scaffold1730 GLEAN mRNA 113542 117424 0.494862 - . ID=CGI_10012254; scaffold381 WUBlastX LINE_L1 442002 442592 29 - . . scaffold381 GLEAN mRNA 430162 460289 0.970742 - . ID=CGI_10017566; scaffold41358 WUBlastX DNA_TcMar-Tc1 111140 111226 29 + . . scaffold41358 GLEAN mRNA 104455 115098 0.650923 - . ID=CGI_10004976; scaffold1870 WUBlastX LTR_Gypsy 333298 333420 20 - . . scaffold1870 GLEAN mRNA 332737 333609 1 - . ID=CGI_10013192; scaffold31 WUBlastX LINE_L1-Tx1 14711 15043 36 - . . scaffold31 GLEAN mRNA 7584 16133 0.792688 - . ID=CGI_10013551; scaffold271 WUBlastX LINE_L1-Tx1 471220 471414 47 - . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold408 WUBlastX LTR_DIRS 564461 564772 45 - . . scaffold408 GLEAN mRNA 551872 569972 0.499918 - . ID=CGI_10023249; scaffold535 WUBlastX DNA_IS4EU 2848 2949 30 + . . scaffold535 GLEAN mRNA 109 7288 0.491277 + . ID=CGI_10020280; scaffold44 WUBlastX LINE_RTE-X 389221 389349 31 + . . scaffold44 GLEAN mRNA 377498 394536 0.863441 - . ID=CGI_10016839; scaffold43526 WUBlastX LINE_RTE-X 38453 38530 59 + . . scaffold43526 GLEAN mRNA 36766 62971 0.985699 + . ID=CGI_10010784; scaffold36278 WUBlastX DNA_PiggyBac 29290 29520 70 - . . scaffold36278 GLEAN mRNA 22300 32002 0.651135 - . ID=CGI_10001848; scaffold241 WUBlastX DNA_TcMar-Fot1 288181 288459 76 - . . scaffold241 GLEAN mRNA 288013 288459 0.999802 - . ID=CGI_10025101; scaffold1321 WUBlastX LTR_Gypsy 161592 161657 34 - . . scaffold1321 GLEAN mRNA 144678 167818 0.544485 + . ID=CGI_10010664; scaffold150 WUBlastX DNA_IS4EU 1760005 1760328 84 - . . scaffold150 GLEAN mRNA 1752956 1765015 0.80741 + . ID=CGI_10028702; scaffold419 WUBlastX DNA_IS4EU 894890 895069 70 + . . scaffold419 GLEAN mRNA 894890 897714 0.983071 + . ID=CGI_10028373; scaffold772 WUBlastX DNA_hAT-Blackja 242430 242954 58 + . . scaffold772 GLEAN mRNA 238963 261048 0.714694 - . ID=CGI_10016587; scaffold591 WUBlastX LINE_RTE-X 1289822 1290127 53 - . . scaffold591 GLEAN mRNA 1286959 1291687 1 - . ID=CGI_10027616; scaffold896 WUBlastX LINE_RTE-X 123486 123629 46 + . . scaffold896 GLEAN mRNA 120712 129433 0.394415 + . ID=CGI_10022834; scaffold39758 WUBlastX LINE_CR1 62211 62309 24 - . . scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold1200 WUBlastX LINE_CR1-L2 102057 102242 116 + . . scaffold1200 GLEAN mRNA 102018 102305 0.618241 + . ID=CGI_10007618; scaffold780 WUBlastX LINE_L2 216240 216683 34 + . . scaffold780 GLEAN mRNA 205875 237446 0.523885 + . ID=CGI_10024723; scaffold451 WUBlastX LINE_L1-Tx1 87696 88574 24 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold90 WUBlastX DNA_hAT-Tip100 399186 399938 110 - . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold502 WUBlastX LINE_L1 76587 76643 23 + . . scaffold502 GLEAN mRNA 66995 88059 0.642831 + . ID=CGI_10024313; scaffold1665 WUBlastX LINE_I 415348 415659 32 + . . scaffold1665 GLEAN mRNA 414201 417723 0.990268 - . ID=CGI_10015218; scaffold1221 WUBlastX DNA_PiggyBac 512126 512206 37 - . . scaffold1221 GLEAN mRNA 505287 514877 0.549954 - . ID=CGI_10019748; scaffold569 WUBlastX LINE_Jockey 153406 153948 134 - . . scaffold569 GLEAN mRNA 133999 168874 0.674144 + . ID=CGI_10009498; scaffold975 WUBlastX LINE_RTE-BovB 130099 130743 90 + . . scaffold975 GLEAN mRNA 123992 132770 1 - . ID=CGI_10013325; scaffold247 WUBlastX LINE_RTE-BovB 204567 204740 26 - . . scaffold247 GLEAN mRNA 197989 208519 0.419557 + . ID=CGI_10018593; scaffold1024 WUBlastX DNA_PiggyBac 1074626 1074850 66 - . . scaffold1024 GLEAN mRNA 1070619 1077233 0.9551 - . ID=CGI_10028563; scaffold550 WUBlastX RC_Helitron 149373 149684 41 - . . scaffold550 GLEAN mRNA 134556 152020 0.969581 - . ID=CGI_10012490; scaffold298 WUBlastX LTR_Gypsy-Cigr 281371 281655 151 - . . scaffold298 GLEAN mRNA 275559 284249 0.999682 - . ID=CGI_10018823; scaffold209 WUBlastX DNA_hAT-Tip100 259298 259972 44 - . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold481 WUBlastX DNA_Crypton 1210676 1210969 70 + . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX DNA_Crypton 1211520 1211816 74 + . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold1086 WUBlastX LINE_Jockey 102133 102612 104 - . . scaffold1086 GLEAN mRNA 71811 104849 0.15447 + . ID=CGI_10021931; scaffold343 WUBlastX DNA_Kolobok 624008 624271 141 - . . scaffold343 GLEAN mRNA 618238 636839 0.461317 - . ID=CGI_10021768; scaffold343 WUBlastX DNA_Kolobok 624008 624271 141 - . . scaffold343 GLEAN mRNA 618887 626946 0.427987 + . ID=CGI_10021769; scaffold695 WUBlastX LINE_L1 89242 89325 28 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold1558 WUBlastX LINE_L1-Tx1 41203 41394 57 - . . scaffold1558 GLEAN mRNA 34398 73907 0.517269 - . ID=CGI_10004094; scaffold599 WUBlastX LTR_Pao 29982 30164 25 + . . scaffold599 GLEAN mRNA 29083 62122 0.696781 + . ID=CGI_10021706; scaffold145 WUBlastX LINE_RTE-BovB 1137332 1137385 29 - . . scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold365 WUBlastX LTR_Pao 253983 254939 371 + . . scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; scaffold833 WUBlastX LINE_L1-Tx1 465422 465823 82 - . . scaffold833 GLEAN mRNA 463710 469468 0.999591 - . ID=CGI_10016746; scaffold1750 WUBlastX LTR_Pao 637807 638106 87 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold42890 WUBlastX LINE_L1 196453 196599 79 + . . scaffold42890 GLEAN mRNA 182304 199068 0.438528 - . ID=CGI_10008045; scaffold419 WUBlastX LINE_RTE-X 808182 808316 45 + . . scaffold419 GLEAN mRNA 806382 811629 0.999675 - . ID=CGI_10028368; scaffold269 WUBlastX LINE_RTE-X 456067 456309 110 + . . scaffold269 GLEAN mRNA 436625 461028 0.269378 - . ID=CGI_10019006; scaffold660 WUBlastX LINE_RTE-X 107646 107834 51 + . . scaffold660 GLEAN mRNA 98549 108257 0.999675 - . ID=CGI_10013750; scaffold847 WUBlastX LTR_DIRS 510163 511344 720 - . . scaffold847 GLEAN mRNA 507894 513184 0.74223 - . ID=CGI_10022280; scaffold847 WUBlastX LTR_DIRS 511355 511729 211 - . . scaffold847 GLEAN mRNA 507894 513184 0.74223 - . ID=CGI_10022280; scaffold1445 WUBlastX LTR_Gypsy-Cigr 192967 193578 164 - . . scaffold1445 GLEAN mRNA 192510 193966 0.699862 - . ID=CGI_10010372; scaffold630 WUBlastX LTR_Gypsy 342259 342489 251 - . . scaffold630 GLEAN mRNA 340806 353631 0.861539 - . ID=CGI_10018332; scaffold630 WUBlastX LTR_Gypsy 342483 342965 400 - . . scaffold630 GLEAN mRNA 340806 353631 0.861539 - . ID=CGI_10018332; scaffold162 WUBlastX LTR_Gypsy 271221 271409 58 - . . scaffold162 GLEAN mRNA 254328 277132 0.643433 - . ID=CGI_10014094; scaffold290 WUBlastX LTR_Gypsy 552732 552980 78 + . . scaffold290 GLEAN mRNA 545890 556657 0.999676 + . ID=CGI_10018556; scaffold854 WUBlastX LINE_L1-Tx1 615343 615735 144 + . . scaffold854 GLEAN mRNA 615007 630217 0.932456 + . ID=CGI_10022262; scaffold1880 WUBlastX LINE_RTE-X 52502 54811 1112 + . . scaffold1880 GLEAN mRNA 5602 92195 0.383639 - . ID=CGI_10008204; scaffold85 WUBlastX LTR_Gypsy-Cigr 351874 353313 809 - . . scaffold85 GLEAN mRNA 332841 357883 0.849566 - . ID=CGI_10020703; scaffold1866 WUBlastX LINE_CR1-L2 247746 248012 117 - . . scaffold1866 GLEAN mRNA 240570 251729 0.651094 - . ID=CGI_10017912; scaffold1532 WUBlastX LTR_Ngaro 1133631 1133750 33 - . . scaffold1532 GLEAN mRNA 1127066 1152811 0.992288 + . ID=CGI_10028283; scaffold1154 WUBlastX DNA_Kolobok-IS4 1080593 1080670 22 - . . scaffold1154 GLEAN mRNA 1080378 1140871 0.124336 - . ID=CGI_10026207; scaffold165 WUBlastX DNA_En-Spm 306997 307641 199 - . . scaffold165 GLEAN mRNA 293161 307887 0.249814 - . ID=CGI_10015330; scaffold689 WUBlastX LINE_R2-Hero 269912 270187 219 + . . scaffold689 GLEAN mRNA 268555 270351 0.998685 - . ID=CGI_10014829; scaffold1574 WUBlastX LINE_Penelope 92792 93305 172 + . . scaffold1574 GLEAN mRNA 78319 93305 0.677897 + . ID=CGI_10016320; scaffold44 WUBlastX DNA_IS4EU 349361 349987 226 - . . scaffold44 GLEAN mRNA 346940 353357 0.748127 - . ID=CGI_10016836; scaffold1898 WUBlastX LTR_Pao 309203 309916 673 - . . scaffold1898 GLEAN mRNA 306186 312813 0.889712 + . ID=CGI_10012220; scaffold1898 WUBlastX LTR_Pao 312140 312454 173 - . . scaffold1898 GLEAN mRNA 306186 312813 0.889712 + . ID=CGI_10012220; scaffold1241 WUBlastX LTR_Gypsy 40728 44750 2062 + . . scaffold1241 GLEAN mRNA 33172 55862 0.858231 - . ID=CGI_10016418; scaffold1670 WUBlastX LTR_Ngaro 317322 318041 243 - . . scaffold1670 GLEAN mRNA 315570 334176 0.999676 + . ID=CGI_10017618; scaffold890 WUBlastX DNA_TcMar-Tc1 83473 84408 115 - . . scaffold890 GLEAN mRNA 81187 101968 1 - . ID=CGI_10014464; scaffold317 WUBlastX DNA_Maverick 158673 159209 239 + . . scaffold317 GLEAN mRNA 153090 159310 0.520587 + . ID=CGI_10019347; scaffold70 WUBlastX DNA_TcMar-Tc1 701932 702669 92 - . . scaffold70 GLEAN mRNA 689757 708725 0.811083 - . ID=CGI_10024788; scaffold41344 WUBlastX LINE_L2 112848 113084 56 - . . scaffold41344 GLEAN mRNA 105897 115468 0.999612 + . ID=CGI_10004984; scaffold198 WUBlastX LTR_Gypsy 798354 802154 2181 + . . scaffold198 GLEAN mRNA 771982 806817 0.999999 + . ID=CGI_10027821; scaffold1518 WUBlastX LTR_Ngaro 268615 268911 142 - . . scaffold1518 GLEAN mRNA 258241 287104 0.241996 + . ID=CGI_10017803; scaffold1656 WUBlastX LTR_Gypsy-Troyk 74818 75384 117 + . . scaffold1656 GLEAN mRNA 73832 80261 0.912224 + . ID=CGI_10006143; scaffold1656 WUBlastX LTR_Gypsy-Troyk 75390 75638 87 + . . scaffold1656 GLEAN mRNA 73832 80261 0.912224 + . ID=CGI_10006143; scaffold490 WUBlastX DNA_TcMar-Fot1 116523 116996 166 - . . scaffold490 GLEAN mRNA 110595 119533 0.717521 + . ID=CGI_10009162; scaffold38272 WUBlastX LINE_L1 39449 39856 89 + . . scaffold38272 GLEAN mRNA 12040 52169 0.605388 + . ID=CGI_10002702; scaffold88 WUBlastX LINE_L1-Tx1 23145 23516 51 - . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX LINE_L1-Tx1 23145 23516 51 - . . scaffold88 GLEAN mRNA 22316 33699 0.444301 - . ID=CGI_10011115; scaffold1397 WUBlastX DNA_Sola 217787 219592 352 - . . scaffold1397 GLEAN mRNA 206907 222276 0.644927 - . ID=CGI_10017120; scaffold1036 WUBlastX DNA_Maverick 202080 202436 143 - . . scaffold1036 GLEAN mRNA 202062 206192 0.444605 - . ID=CGI_10019953; scaffold350 WUBlastX DNA_Academ 1105 1123 33 - . . scaffold350 GLEAN mRNA 1105 3206 0.996578 - . ID=CGI_10000780; scaffold350 WUBlastX DNA_Academ 1141 1863 356 - . . scaffold350 GLEAN mRNA 1105 3206 0.996578 - . ID=CGI_10000780; scaffold350 WUBlastX DNA_Academ 1810 2073 89 - . . scaffold350 GLEAN mRNA 1105 3206 0.996578 - . ID=CGI_10000780; scaffold1101 WUBlastX LINE_RTE-X 526248 526928 238 - . . scaffold1101 GLEAN mRNA 521845 536003 0.859729 + . ID=CGI_10023031; scaffold579 WUBlastX LINE_RTE-BovB 267213 267287 28 + . . scaffold579 GLEAN mRNA 263302 283849 0.988891 + . ID=CGI_10011268; scaffold1862 WUBlastX LINE_L1-Tx1 194792 195166 243 + . . scaffold1862 GLEAN mRNA 170077 209119 0.953083 - . ID=CGI_10021893; scaffold767 WUBlastX LINE_L2 320883 321731 623 + . . scaffold767 GLEAN mRNA 315899 380131 0.808127 - . ID=CGI_10014850; scaffold964 WUBlastX LTR_Ngaro 224436 225287 386 + . . scaffold964 GLEAN mRNA 212100 240231 0.999794 - . ID=CGI_10009735; scaffold94 WUBlastX LTR_Gypsy 64641 65012 62 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold163 WUBlastX LTR_Gypsy 476053 476913 38 + . . scaffold163 GLEAN mRNA 440738 483510 0.311673 + . ID=CGI_10018629; scaffold1174 WUBlastX DNA_Harbinger 975554 975730 57 + . . scaffold1174 GLEAN mRNA 969973 990165 0.301625 + . ID=CGI_10026076; scaffold784 WUBlastX LINE_I 850320 850745 31 + . . scaffold784 GLEAN mRNA 848886 854519 0.990187 - . ID=CGI_10024446; scaffold226 WUBlastX DNA_TcMar-Marin 1058010 1058081 20 - . . scaffold226 GLEAN mRNA 1050620 1061522 0.99513 - . ID=CGI_10025399; scaffold42070 WUBlastX LINE_L1 67834 68277 37 - . . scaffold42070 GLEAN mRNA 63527 73059 0.466285 + . ID=CGI_10006078; scaffold38466 WUBlastX DNA_Kolobok-Hyd 3170 3319 21 + . . scaffold38466 GLEAN mRNA 3170 4605 0.999675 + . ID=CGI_10002797; scaffold38466 WUBlastX DNA_Kolobok-Hyd 3590 3655 26 + . . scaffold38466 GLEAN mRNA 3170 4605 0.999675 + . ID=CGI_10002797; scaffold41356 WUBlastX LINE_RTE-X 57789 57959 55 - . . scaffold41356 GLEAN mRNA 49810 66673 0.811456 + . ID=CGI_10004995; scaffold29598 WUBlastX LINE_L2 3323 4000 49 - . . scaffold29598 GLEAN mRNA 1487 5790 0.999943 - . ID=CGI_10000548; scaffold504 WUBlastX LINE_L2 177574 177912 42 - . . scaffold504 GLEAN mRNA 176392 179041 1 - . ID=CGI_10016023; scaffold43608 WUBlastX DNA_TcMar-Marin 14610 14705 30 + . . scaffold43608 GLEAN mRNA 13222 18761 0.825558 - . ID=CGI_10011388; scaffold847 WUBlastX LTR_Gypsy 65259 65522 69 - . . scaffold847 GLEAN mRNA 61092 71360 0.999451 - . ID=CGI_10022265; scaffold675 WUBlastX DNA_TcMar-Marin 115319 115567 62 - . . scaffold675 GLEAN mRNA 109657 116904 0.999611 - . ID=CGI_10017856; scaffold1715 WUBlastX LINE_RTE-X 337611 337775 43 - . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold38750 WUBlastX LINE_RTE-X 4459 4758 62 + . . scaffold38750 GLEAN mRNA 2403 8066 0.927797 + . ID=CGI_10002953; scaffold40828 WUBlastX LTR_Gypsy 57463 57657 64 - . . scaffold40828 GLEAN mRNA 28348 61048 0.605765 + . ID=CGI_10004502; scaffold815 WUBlastX LINE_CR1 10487 10561 22 + . . scaffold815 GLEAN mRNA 3623 27508 0.999835 - . ID=CGI_10001932; scaffold301 WUBlastX DNA_TcMar-ISRm1 515194 515430 68 - . . scaffold301 GLEAN mRNA 515134 528114 0.999355 - . ID=CGI_10026723; scaffold257 WUBlastX LTR_DIRS 1604992 1605198 88 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold364 WUBlastX DNA_Crypton 715375 715635 69 - . . scaffold364 GLEAN mRNA 715375 716114 0.276063 - . ID=CGI_10022710; scaffold364 WUBlastX DNA_Crypton 716389 716417 21 - . . scaffold364 GLEAN mRNA 716389 716769 1 - . ID=CGI_10022711; scaffold364 WUBlastX DNA_Crypton 716410 716484 28 - . . scaffold364 GLEAN mRNA 716389 716769 1 - . ID=CGI_10022711; scaffold1603 WUBlastX RC_Helitron 59747 60184 107 + . . scaffold1603 GLEAN mRNA 44108 68236 0.999997 - . ID=CGI_10012816; scaffold70 WUBlastX LINE_L1-Tx1 612920 613168 90 + . . scaffold70 GLEAN mRNA 605933 624830 0.814164 - . ID=CGI_10024778; scaffold1031 WUBlastX DNA_hAT 387943 388623 75 - . . scaffold1031 GLEAN mRNA 387475 388722 0.970693 - . ID=CGI_10019708; scaffold829 WUBlastX DNA_TcMar-Pogo 592598 592846 113 - . . scaffold829 GLEAN mRNA 577056 600770 0.812815 + . ID=CGI_10021152; scaffold801 WUBlastX LINE_RTE-X 638252 638470 98 + . . scaffold801 GLEAN mRNA 629688 677591 0.460193 - . ID=CGI_10024093; scaffold1813 WUBlastX LINE_RTE-X 112714 113055 60 - . . scaffold1813 GLEAN mRNA 106186 113865 0.957305 + . ID=CGI_10005994; scaffold41546 WUBlastX LINE_L2 48906 49622 83 - . . scaffold41546 GLEAN mRNA 38795 60206 0.986293 + . ID=CGI_10005268; scaffold204 WUBlastX DNA_Harbinger 850752 850844 52 + . . scaffold204 GLEAN mRNA 840254 857007 0.756652 + . ID=CGI_10026136; scaffold204 WUBlastX DNA_Harbinger 851191 851376 89 + . . scaffold204 GLEAN mRNA 840254 857007 0.756652 + . ID=CGI_10026136; scaffold1024 WUBlastX DNA_PiggyBac 1075420 1075530 32 - . . scaffold1024 GLEAN mRNA 1070619 1077233 0.9551 - . ID=CGI_10028563; scaffold1219 WUBlastX LINE_L1-Tx1 870451 871062 46 - . . scaffold1219 GLEAN mRNA 868848 874682 0.999351 + . ID=CGI_10024304; scaffold1792 WUBlastX LTR_Gypsy 330399 330614 162 + . . scaffold1792 GLEAN mRNA 322843 336201 0.992772 - . ID=CGI_10012752; scaffold1792 WUBlastX LTR_Gypsy 330628 331044 207 + . . scaffold1792 GLEAN mRNA 322843 336201 0.992772 - . ID=CGI_10012752; scaffold773 WUBlastX LTR_Gypsy-Cigr 10393 10809 53 - . . scaffold773 GLEAN mRNA 9303 18869 0.52374 - . ID=CGI_10011341; scaffold773 WUBlastX LTR_Gypsy-Cigr 10823 11098 92 - . . scaffold773 GLEAN mRNA 9303 18869 0.52374 - . ID=CGI_10011341; scaffold976 WUBlastX LTR_Gypsy-Cigr 42972 43538 160 - . . scaffold976 GLEAN mRNA 40652 60127 0.884558 - . ID=CGI_10014002; scaffold43388 WUBlastX LINE_L2 230661 231284 115 + . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold1021 WUBlastX LTR_DIRS 102220 102507 68 + . . scaffold1021 GLEAN mRNA 100590 130334 0.994213 + . ID=CGI_10022484; scaffold41816 WUBlastX LINE_CR1 87116 87289 26 - . . scaffold41816 GLEAN mRNA 84334 89370 0.999542 + . ID=CGI_10005649; scaffold38492 WUBlastX DNA_TcMar-Tc2 22584 23594 202 - . . scaffold38492 GLEAN mRNA 22581 25357 0.777277 - . ID=CGI_10002800; scaffold271 WUBlastX DNA_Academ 189770 189880 23 - . . scaffold271 GLEAN mRNA 188870 219899 0.29689 - . ID=CGI_10024460; scaffold40282 WUBlastX LTR_Gypsy 73216 73563 108 - . . scaffold40282 GLEAN mRNA 56091 83549 0.539379 + . ID=CGI_10004002; scaffold336 WUBlastX LINE_L2 199104 199547 133 - . . scaffold336 GLEAN mRNA 195464 211672 0.66246 + . ID=CGI_10012568; scaffold88 WUBlastX LINE_L1-Tx1 24134 24529 143 - . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX LINE_L1-Tx1 24134 24529 143 - . . scaffold88 GLEAN mRNA 22316 33699 0.444301 - . ID=CGI_10011115; scaffold1819 WUBlastX LINE_L1 106096 106138 22 - . . scaffold1819 GLEAN mRNA 106096 109792 0.535448 - . ID=CGI_10007292; scaffold1704 WUBlastX LINE_RTE-X 149017 149574 37 + . . scaffold1704 GLEAN mRNA 130337 165249 0.994715 + . ID=CGI_10010170; scaffold37664 WUBlastX LINE_L2 30096 30839 182 + . . scaffold37664 GLEAN mRNA 26553 34965 0.581431 + . ID=CGI_10002440; scaffold37664 WUBlastX LINE_L2 31736 31831 26 + . . scaffold37664 GLEAN mRNA 26553 34965 0.581431 + . ID=CGI_10002440; scaffold1024 WUBlastX DNA_TcMar-Tc1 223342 224070 133 - . . scaffold1024 GLEAN mRNA 191784 246938 0.99909 + . ID=CGI_10028528; scaffold1532 WUBlastX LTR_Ngaro 640269 640919 202 + . . scaffold1532 GLEAN mRNA 638492 642462 0.995183 + . ID=CGI_10028264; scaffold1264 WUBlastX LINE_L1 136179 137522 839 + . . scaffold1264 GLEAN mRNA 129263 151960 0.5 - . ID=CGI_10007176; scaffold1750 WUBlastX LTR_Pao 637807 638235 61 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold517 WUBlastX DNA_Kolobok 191056 191277 51 + . . scaffold517 GLEAN mRNA 188444 202746 0.541804 + . ID=CGI_10008984; scaffold517 WUBlastX DNA_Kolobok 191411 191653 85 + . . scaffold517 GLEAN mRNA 188444 202746 0.541804 + . ID=CGI_10008984; scaffold517 WUBlastX DNA_Kolobok 192221 192526 80 + . . scaffold517 GLEAN mRNA 188444 202746 0.541804 + . ID=CGI_10008984; scaffold1862 WUBlastX DNA_IS4EU 658717 659691 141 + . . scaffold1862 GLEAN mRNA 655247 661635 1 - . ID=CGI_10021923; scaffold40680 WUBlastX DNA_Harbinger 27135 27329 132 + . . scaffold40680 GLEAN mRNA 27135 28116 0.500588 + . ID=CGI_10004354; scaffold40680 WUBlastX DNA_Harbinger 27042 27329 132 + . . scaffold40680 GLEAN mRNA 16 36776 0.246623 - . ID=CGI_10004353; scaffold925 WUBlastX LTR_DIRS 442486 442668 100 + . . scaffold925 GLEAN mRNA 430454 444048 0.986598 + . ID=CGI_10017428; scaffold40134 WUBlastX LINE_RTE-X 69439 69762 149 + . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold1087 WUBlastX LTR_Gypsy 13765 14775 352 + . . scaffold1087 GLEAN mRNA 1458 16224 0.544547 + . ID=CGI_10001183; scaffold858 WUBlastX LINE_L2 15203 16306 268 - . . scaffold858 GLEAN mRNA 10847 22761 0.93008 - . ID=CGI_10004935; scaffold858 WUBlastX LINE_L2 16512 16625 35 - . . scaffold858 GLEAN mRNA 10847 22761 0.93008 - . ID=CGI_10004935; scaffold1788 WUBlastX LINE_L1-Tx1 47210 47650 360 + . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold292 WUBlastX LINE_L1 7166 7435 145 + . . scaffold292 GLEAN mRNA 5287 26747 0.497399 + . ID=CGI_10003526; scaffold43836 WUBlastX LINE_RTE-X 248636 248827 128 + . . scaffold43836 GLEAN mRNA 242579 251086 0.650911 - . ID=CGI_10013062; scaffold1345 WUBlastX LTR_Gypsy 239985 240275 105 - . . scaffold1345 GLEAN mRNA 239892 251479 1 - . ID=CGI_10016283; scaffold1272 WUBlastX LTR_Ngaro 167091 168374 353 - . . scaffold1272 GLEAN mRNA 155957 203314 0.324986 - . ID=CGI_10008310; scaffold413 WUBlastX LINE_CR1-L2 736088 736555 186 + . . scaffold413 GLEAN mRNA 729457 747893 0.897312 - . ID=CGI_10022826; scaffold833 WUBlastX LINE_L1 467315 467770 118 - . . scaffold833 GLEAN mRNA 463710 469468 0.999591 - . ID=CGI_10016746; scaffold43008 WUBlastX LINE_L1-Tx1 85100 85351 176 - . . scaffold43008 GLEAN mRNA 78684 87806 0.543465 - . ID=CGI_10008462; scaffold1154 WUBlastX LTR_Ngaro 368379 368477 25 + . . scaffold1154 GLEAN mRNA 360464 375818 0.544657 - . ID=CGI_10026164; scaffold1154 WUBlastX LTR_Ngaro 368379 368477 25 + . . scaffold1154 GLEAN mRNA 365982 369978 0.558383 + . ID=CGI_10026165; scaffold241 WUBlastX LTR_DIRS 62770 63066 172 - . . scaffold241 GLEAN mRNA 57268 78429 0.9966 + . ID=CGI_10025090; scaffold241 WUBlastX LTR_DIRS 63030 63407 181 - . . scaffold241 GLEAN mRNA 57268 78429 0.9966 + . ID=CGI_10025090; scaffold241 WUBlastX LTR_DIRS 63402 63584 136 - . . scaffold241 GLEAN mRNA 57268 78429 0.9966 + . ID=CGI_10025090; scaffold1343 WUBlastX DNA_Maverick 98238 99761 140 + . . scaffold1343 GLEAN mRNA 94192 115140 0.999675 + . ID=CGI_10005048; scaffold88 WUBlastX LINE_L1 26382 26603 87 - . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX LINE_L1 26382 26603 87 - . . scaffold88 GLEAN mRNA 22316 33699 0.444301 - . ID=CGI_10011115; scaffold37430 WUBlastX LTR_Pao 40048 40560 218 - . . scaffold37430 GLEAN mRNA 25525 41907 0.539363 + . ID=CGI_10002358; scaffold817 WUBlastX LTR_Gypsy-Cigr 55167 56351 798 - . . scaffold817 GLEAN mRNA 54160 69177 0.983542 - . ID=CGI_10008657; scaffold40836 WUBlastX LINE_RTE-X 84079 84525 77 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold698 WUBlastX LTR_Gypsy 84824 84979 41 - . . scaffold698 GLEAN mRNA 81586 93981 0.592995 - . ID=CGI_10020727; scaffold26 WUBlastX LTR_Gypsy 38484 38774 67 - . . scaffold26 GLEAN mRNA 37184 39443 0.783788 + . ID=CGI_10002298; scaffold1518 WUBlastX DNA_hAT-Tip100 159448 159714 63 + . . scaffold1518 GLEAN mRNA 153424 166490 0.996783 + . ID=CGI_10017796; scaffold39258 WUBlastX DNA_hAT-Tip100 22763 23032 47 - . . scaffold39258 GLEAN mRNA 21383 23695 0.999661 - . ID=CGI_10003263; scaffold1639 WUBlastX DNA_Kolobok-IS4 82659 83189 42 - . . scaffold1639 GLEAN mRNA 82644 83780 1 - . ID=CGI_10005439; scaffold42990 WUBlastX LINE_RTE-X 188762 188941 56 - . . scaffold42990 GLEAN mRNA 185047 195604 0.999676 + . ID=CGI_10008386; scaffold604 WUBlastX LINE_RTE-X 45198 45338 54 - . . scaffold604 GLEAN mRNA 42759 53290 0.454666 + . ID=CGI_10005591; scaffold36808 WUBlastX LINE_RTE-X 35334 35486 33 + . . scaffold36808 GLEAN mRNA 30018 36587 1 - . ID=CGI_10002147; scaffold1682 WUBlastX LINE_RTE-X 207059 207241 22 + . . scaffold1682 GLEAN mRNA 191866 233299 0.316426 - . ID=CGI_10016049; scaffold76 WUBlastX LINE_RTE-X 225684 225980 25 + . . scaffold76 GLEAN mRNA 221391 229684 0.999675 - . ID=CGI_10009406; scaffold1682 WUBlastX LTR_Ngaro 425384 425620 48 - . . scaffold1682 GLEAN mRNA 421857 429054 0.325277 - . ID=CGI_10016058; scaffold683 WUBlastX LINE_Jockey 160190 160450 33 - . . scaffold683 GLEAN mRNA 156724 197942 0.700222 + . ID=CGI_10010360; scaffold165 WUBlastX DNA_En-Spm 306877 307470 36 - . . scaffold165 GLEAN mRNA 293161 307887 0.249814 - . ID=CGI_10015330; scaffold44006 WUBlastX DNA_En-Spm 117539 117586 20 + . . scaffold44006 GLEAN mRNA 95072 120906 0.949709 + . ID=CGI_10015574; scaffold1623 WUBlastX DNA_Harbinger 16030 16191 70 - . . scaffold1623 GLEAN mRNA 2672 21645 0.211469 + . ID=CGI_10002853; scaffold950 WUBlastX DNA_TcMar-Tc1 350700 351071 23 - . . scaffold950 GLEAN mRNA 320484 362683 0.981503 - . ID=CGI_10022928; scaffold1347 WUBlastX DNA_Maverick 326358 326495 29 + . . scaffold1347 GLEAN mRNA 315464 333991 0.924019 + . ID=CGI_10012984; scaffold1347 WUBlastX DNA_Maverick 326475 326669 32 + . . scaffold1347 GLEAN mRNA 315464 333991 0.924019 + . ID=CGI_10012984; scaffold1447 WUBlastX LINE_RTE-X 149647 150003 32 - . . scaffold1447 GLEAN mRNA 145066 154561 0.838589 - . ID=CGI_10013818; scaffold43064 WUBlastX LTR_Gypsy 53078 53473 86 + . . scaffold43064 GLEAN mRNA 50628 70232 0.808133 - . ID=CGI_10008627; scaffold854 WUBlastX LINE_L1-Tx1 615007 615261 46 + . . scaffold854 GLEAN mRNA 615007 630217 0.932456 + . ID=CGI_10022262; scaffold43920 WUBlastX DNA_MuDR 307962 308189 66 + . . scaffold43920 GLEAN mRNA 301272 308189 0.985601 + . ID=CGI_10013998; scaffold1599 WUBlastX LINE_Penelope 631116 631265 56 + . . scaffold1599 GLEAN mRNA 613504 641190 0.579802 + . ID=CGI_10027154; scaffold885 WUBlastX LTR_DIRS 1018461 1018628 83 + . . scaffold885 GLEAN mRNA 1005329 1048267 0.991835 - . ID=CGI_10025234; scaffold43388 WUBlastX DNA_IS4EU 214456 214974 58 + . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold43660 WUBlastX DNA_TcMar-Fot1 270661 271050 91 + . . scaffold43660 GLEAN mRNA 262639 273396 0.998201 - . ID=CGI_10011673; scaffold43660 WUBlastX LINE_Penelope 128223 128390 29 - . . scaffold43660 GLEAN mRNA 125748 138289 0.998274 + . ID=CGI_10011663; scaffold335 WUBlastX LINE_L1 385063 385233 25 - . . scaffold335 GLEAN mRNA 381520 394130 0.458743 - . ID=CGI_10017105; scaffold42 WUBlastX LINE_RTE-X 205631 205819 91 - . . scaffold42 GLEAN mRNA 204584 223955 0.545569 + . ID=CGI_10018912; scaffold54 WUBlastX LINE_L1-Tx1 89706 89984 38 + . . scaffold54 GLEAN mRNA 86464 97737 1 + . ID=CGI_10023655; scaffold41730 WUBlastX DNA_Zator 115227 115748 72 - . . scaffold41730 GLEAN mRNA 111235 126037 0.999676 + . ID=CGI_10005531; scaffold954 WUBlastX LINE_RTE-X 221374 221484 20 - . . scaffold954 GLEAN mRNA 220872 230195 0.904789 - . ID=CGI_10010745; scaffold510 WUBlastX LTR_DIRS 354817 355011 127 - . . scaffold510 GLEAN mRNA 352980 361330 0.999948 - . ID=CGI_10013775; scaffold43842 WUBlastX DNA_IS4EU 248475 248834 50 + . . scaffold43842 GLEAN mRNA 222782 252762 0.997279 - . ID=CGI_10013106; scaffold43842 WUBlastX DNA_IS4EU 248475 248834 50 + . . scaffold43842 GLEAN mRNA 238630 263260 0.526049 + . ID=CGI_10013107; scaffold315 WUBlastX DNA_Kolobok 39367 39582 92 + . . scaffold315 GLEAN mRNA 38585 42231 0.984467 + . ID=CGI_10020399; scaffold156 WUBlastX LTR_Gypsy 25552 25638 20 + . . scaffold156 GLEAN mRNA 14763 25823 0.782343 + . ID=CGI_10026471; scaffold402 WUBlastX LINE_L1 517328 517423 24 + . . scaffold402 GLEAN mRNA 514262 530560 0.999749 + . ID=CGI_10019333; scaffold402 WUBlastX LINE_L1 517629 517817 66 + . . scaffold402 GLEAN mRNA 514262 530560 0.999749 + . ID=CGI_10019333; scaffold1589 WUBlastX LINE_L1 380576 380629 27 + . . scaffold1589 GLEAN mRNA 370243 390217 0.643157 + . ID=CGI_10024115; scaffold1698 WUBlastX LINE_Penelope 558674 559171 59 - . . scaffold1698 GLEAN mRNA 555176 595908 0.182915 - . ID=CGI_10019393; scaffold469 WUBlastX LINE_RTE-X 937614 937961 81 - . . scaffold469 GLEAN mRNA 925100 941633 0.564574 + . ID=CGI_10024703; scaffold290 WUBlastX LINE_RTE-X 184739 185245 88 + . . scaffold290 GLEAN mRNA 184166 208505 0.688957 - . ID=CGI_10018539; scaffold42528 WUBlastX LINE_CR1-L2 132544 133080 67 - . . scaffold42528 GLEAN mRNA 99418 143145 0.451859 - . ID=CGI_10007209; scaffold412 WUBlastX LTR_Gypsy 477191 477412 54 - . . scaffold412 GLEAN mRNA 475444 479022 0.999922 - . ID=CGI_10018583; scaffold459 WUBlastX DNA_TcMar-Marin 462709 463251 96 + . . scaffold459 GLEAN mRNA 450027 467601 0.693067 - . ID=CGI_10018185; scaffold39804 WUBlastX LINE_L1-Tx1 17752 17973 69 - . . scaffold39804 GLEAN mRNA 15936 20719 1 + . ID=CGI_10003618; scaffold39804 WUBlastX LINE_L1-Tx1 18330 18596 50 - . . scaffold39804 GLEAN mRNA 15936 20719 1 + . ID=CGI_10003618; scaffold678 WUBlastX LINE_L2 647894 649093 814 + . . scaffold678 GLEAN mRNA 636648 664664 0.986036 - . ID=CGI_10026369; scaffold39470 WUBlastX LTR_Ngaro 21171 22466 948 - . . scaffold39470 GLEAN mRNA 18519 32880 0.998788 - . ID=CGI_10003379; scaffold1050 WUBlastX DNA_hAT 217362 217526 80 + . . scaffold1050 GLEAN mRNA 214951 218048 0.349007 + . ID=CGI_10009182; scaffold41598 WUBlastX DNA_En-Spm 61070 61492 119 - . . scaffold41598 GLEAN mRNA 59426 74794 0.449575 - . ID=CGI_10005304; scaffold41598 WUBlastX DNA_En-Spm 61492 61686 22 - . . scaffold41598 GLEAN mRNA 59426 74794 0.449575 - . ID=CGI_10005304; scaffold987 WUBlastX LTR_DIRS 84972 86003 342 - . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold20 WUBlastX LTR_Gypsy 752466 753041 150 - . . scaffold20 GLEAN mRNA 752421 753041 1 - . ID=CGI_10023596; scaffold1838 WUBlastX LINE_RTE-X 99022 99558 125 + . . scaffold1838 GLEAN mRNA 95415 110660 0.499812 + . ID=CGI_10014243; scaffold43008 WUBlastX DNA_Kolobok 56501 56917 150 - . . scaffold43008 GLEAN mRNA 53966 64440 0.597586 + . ID=CGI_10008461; scaffold126 WUBlastX DNA_MuDR 579064 579261 97 + . . scaffold126 GLEAN mRNA 576864 580670 0.999598 + . ID=CGI_10019200; scaffold286 WUBlastX DNA_Kolobok 208129 208362 67 + . . scaffold286 GLEAN mRNA 207114 209601 0.577193 + . ID=CGI_10015965; scaffold42402 WUBlastX LINE_RTE-X 131167 131223 44 + . . scaffold42402 GLEAN mRNA 124224 132825 0.999027 - . ID=CGI_10006795; scaffold42402 WUBlastX LINE_RTE-X 131167 131223 44 + . . scaffold42402 GLEAN mRNA 127799 151962 1 + . ID=CGI_10006796; scaffold102 WUBlastX LTR_Ngaro 644393 644446 24 + . . scaffold102 GLEAN mRNA 643973 666734 0.499984 + . ID=CGI_10028445; scaffold695 WUBlastX LINE_L1 90509 90733 78 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold41732 WUBlastX LINE_Rex-Babar 59588 59659 26 - . . scaffold41732 GLEAN mRNA 19646 61723 0.444801 - . ID=CGI_10005478; scaffold43272 WUBlastX LTR_Gypsy 119866 120177 206 + . . scaffold43272 GLEAN mRNA 115202 130908 0.999617 - . ID=CGI_10009669; scaffold1525 WUBlastX LINE_L1 39929 40654 145 + . . scaffold1525 GLEAN mRNA 22768 58796 0.21079 + . ID=CGI_10013853; scaffold1179 WUBlastX DNA_Harbinger 17889 18092 66 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold1179 WUBlastX DNA_Harbinger 18609 18722 60 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold257 WUBlastX LINE_RTE-X 318188 318502 145 + . . scaffold257 GLEAN mRNA 306483 324339 0.999073 + . ID=CGI_10027906; scaffold1219 WUBlastX LTR_DIRS 615345 616181 609 - . . scaffold1219 GLEAN mRNA 568258 618995 0.744896 - . ID=CGI_10024286; scaffold1219 WUBlastX LTR_DIRS 616154 617539 1207 - . . scaffold1219 GLEAN mRNA 568258 618995 0.744896 - . ID=CGI_10024286; scaffold1219 WUBlastX LTR_DIRS 618342 618959 513 - . . scaffold1219 GLEAN mRNA 568258 618995 0.744896 - . ID=CGI_10024286; scaffold1448 WUBlastX LINE_RTE-X 4107 4319 91 - . . scaffold1448 GLEAN mRNA 631 18510 0.999948 + . ID=CGI_10011852; scaffold550 WUBlastX RC_Helitron 150734 151387 251 - . . scaffold550 GLEAN mRNA 134556 152020 0.969581 - . ID=CGI_10012490; scaffold1670 WUBlastX LINE_CR1 398265 398594 89 + . . scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; scaffold230 WUBlastX LTR_Gypsy 251877 252395 227 + . . scaffold230 GLEAN mRNA 249649 283875 0.439776 - . ID=CGI_10011254; scaffold1671 WUBlastX LINE_RTE-BovB 310661 311083 170 - . . scaffold1671 GLEAN mRNA 303116 311549 0.243132 + . ID=CGI_10015154; scaffold1671 WUBlastX LINE_RTE-BovB 311049 311414 240 - . . scaffold1671 GLEAN mRNA 303116 311549 0.243132 + . ID=CGI_10015154; scaffold1729 WUBlastX DNA_En-Spm 53461 54555 345 + . . scaffold1729 GLEAN mRNA 50402 60273 0.999674 + . ID=CGI_10008485; scaffold39268 WUBlastX LINE_L2 19029 19508 228 + . . scaffold39268 GLEAN mRNA 16420 27530 0.768779 - . ID=CGI_10003274; scaffold847 WUBlastX LINE_L1 706496 707272 78 - . . scaffold847 GLEAN mRNA 701746 708200 0.916724 - . ID=CGI_10022288; scaffold1255 WUBlastX DNA_Kolobok 4139 4312 74 - . . scaffold1255 GLEAN mRNA 3472 8230 0.999979 - . ID=CGI_10018055; scaffold22 WUBlastX LTR_Pao 1074675 1074995 52 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold1186 WUBlastX LINE_L1-Tx1 237198 238337 319 + . . scaffold1186 GLEAN mRNA 224167 244631 0.351511 - . ID=CGI_10010599; scaffold1097 WUBlastX LINE_RTE-BovB 682176 682595 349 - . . scaffold1097 GLEAN mRNA 671182 687187 0.811238 + . ID=CGI_10024541; scaffold1097 WUBlastX LINE_RTE-BovB 683186 683347 87 - . . scaffold1097 GLEAN mRNA 671182 687187 0.811238 + . ID=CGI_10024541; scaffold1097 WUBlastX LINE_RTE-BovB 682786 683061 116 - . . scaffold1097 GLEAN mRNA 671182 687187 0.811238 + . ID=CGI_10024541; scaffold226 WUBlastX LTR_Ngaro 469058 469213 92 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold509 WUBlastX LINE_L1 258276 258476 93 + . . scaffold509 GLEAN mRNA 253981 269937 0.999344 + . ID=CGI_10018647; scaffold1836 WUBlastX LTR_Pao 1026682 1026807 29 - . . scaffold1836 GLEAN mRNA 1025204 1064430 0.980298 - . ID=CGI_10026321; scaffold481 WUBlastX DNA_TcMar-ISRm1 1037973 1038025 56 - . . scaffold481 GLEAN mRNA 1037973 1041355 0.978909 - . ID=CGI_10027258; scaffold313 WUBlastX LTR_Pao 1141372 1141713 55 - . . scaffold313 GLEAN mRNA 1139830 1142218 0.91163 - . ID=CGI_10026640; scaffold121 WUBlastX LTR_Copia 873837 874085 26 + . . scaffold121 GLEAN mRNA 873837 879402 0.999211 + . ID=CGI_10025682; scaffold35272 WUBlastX LTR_Gypsy 3423 3929 22 + . . scaffold35272 GLEAN mRNA 3165 4829 0.999572 + . ID=CGI_10001464; scaffold424 WUBlastX DNA_hAT-Ac 95119 95166 24 + . . scaffold424 GLEAN mRNA 91671 98594 0.990391 - . ID=CGI_10014353; scaffold365 WUBlastX DNA_IS4EU 580897 581310 54 - . . scaffold365 GLEAN mRNA 578843 581397 0.999968 - . ID=CGI_10022744; scaffold365 WUBlastX DNA_IS4EU 580897 581310 54 - . . scaffold365 GLEAN mRNA 570241 589384 0.479657 + . ID=CGI_10022743; scaffold386 WUBlastX DNA_IS4EU 212915 213151 44 + . . scaffold386 GLEAN mRNA 207482 239068 0.43817 - . ID=CGI_10012689; scaffold790 WUBlastX LINE_L1 222079 222612 65 - . . scaffold790 GLEAN mRNA 221752 222957 0.977562 - . ID=CGI_10013171; scaffold203 WUBlastX DNA_TcMar-Marin 112242 112559 22 - . . scaffold203 GLEAN mRNA 85709 116665 0.258685 + . ID=CGI_10021064; scaffold34144 WUBlastX DNA_Maverick 1054 1131 50 - . . scaffold34144 GLEAN mRNA 1054 1558 0.995722 - . ID=CGI_10001218; scaffold150 WUBlastX LTR_Gypsy 1597790 1598275 26 + . . scaffold150 GLEAN mRNA 1577225 1599619 0.685515 + . ID=CGI_10028690; scaffold32488 WUBlastX DNA_MuDR 6023 6379 58 - . . scaffold32488 GLEAN mRNA 5990 10777 0.98602 - . ID=CGI_10000899; scaffold855 WUBlastX DNA_Maverick 3229 3360 50 + . . scaffold855 GLEAN mRNA 754 11189 0.999983 + . ID=CGI_10001160; scaffold1024 WUBlastX DNA_PiggyBac 1079158 1079424 65 - . . scaffold1024 GLEAN mRNA 1078261 1083838 0.826098 - . ID=CGI_10028565; scaffold1021 WUBlastX LINE_L2 695949 696938 70 + . . scaffold1021 GLEAN mRNA 692304 699453 0.992587 + . ID=CGI_10022506; scaffold681 WUBlastX DNA_TcMar-Fot1 64848 65045 64 - . . scaffold681 GLEAN mRNA 61241 68104 0.482696 + . ID=CGI_10014722; scaffold294 WUBlastX LINE_CR1 136082 136708 56 - . . scaffold294 GLEAN mRNA 124940 137273 0.889486 - . ID=CGI_10010334; scaffold116 WUBlastX LTR_Gypsy 34644 34832 117 - . . scaffold116 GLEAN mRNA 34503 34832 0.733461 - . ID=CGI_10009411; scaffold41162 WUBlastX DNA_IS4EU 71457 71618 27 + . . scaffold41162 GLEAN mRNA 69250 72340 0.651134 + . ID=CGI_10004776; scaffold365 WUBlastX RC_Helitron 271259 271690 73 + . . scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; scaffold557 WUBlastX RC_Helitron 397509 397940 73 - . . scaffold557 GLEAN mRNA 389014 397940 0.685724 - . ID=CGI_10017978; scaffold37424 WUBlastX DNA_Harbinger 15773 15868 25 - . . scaffold37424 GLEAN mRNA 14406 15898 1 - . ID=CGI_10002371; scaffold37424 WUBlastX DNA_Harbinger 15867 15898 59 - . . scaffold37424 GLEAN mRNA 14406 15898 1 - . ID=CGI_10002371; scaffold1831 WUBlastX LINE_L2 25619 25846 23 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold313 WUBlastX LINE_RTE-X 1190150 1190269 34 - . . scaffold313 GLEAN mRNA 1180096 1191800 0.492755 + . ID=CGI_10026643; scaffold786 WUBlastX LINE_L1-Tx1 347157 347351 50 + . . scaffold786 GLEAN mRNA 340138 347810 1 + . ID=CGI_10013708; scaffold206 WUBlastX DNA_En-Spm 128485 128706 95 - . . scaffold206 GLEAN mRNA 123903 131741 0.999975 - . ID=CGI_10011374; scaffold789 WUBlastX LTR_Gypsy 323617 323877 155 + . . scaffold789 GLEAN mRNA 321917 326732 0.597754 + . ID=CGI_10017201; scaffold432 WUBlastX DNA_hAT 724520 725299 76 - . . scaffold432 GLEAN mRNA 720813 726190 0.996496 - . ID=CGI_10023119; scaffold43660 WUBlastX LINE_Penelope 127380 127655 51 - . . scaffold43660 GLEAN mRNA 125748 138289 0.998274 + . ID=CGI_10011663; scaffold43660 WUBlastX LINE_Penelope 127955 128191 33 - . . scaffold43660 GLEAN mRNA 125748 138289 0.998274 + . ID=CGI_10011663; scaffold41174 WUBlastX LINE_RTE-X 61610 61990 114 + . . scaffold41174 GLEAN mRNA 37943 88980 0.479824 - . ID=CGI_10004794; scaffold6 WUBlastX LINE_CR1-L2 673318 673728 54 - . . scaffold6 GLEAN mRNA 669450 677435 1 + . ID=CGI_10022331; scaffold1462 WUBlastX LINE_L2 159367 159561 71 - . . scaffold1462 GLEAN mRNA 126068 169270 0.382353 + . ID=CGI_10014372; scaffold253 WUBlastX LINE_L2 9308 9682 97 - . . scaffold253 GLEAN mRNA 2368 20050 0.999351 + . ID=CGI_10003487; scaffold1639 WUBlastX DNA_Harbinger 34901 35188 54 + . . scaffold1639 GLEAN mRNA 27466 42582 0.863535 + . ID=CGI_10005437; scaffold43446 WUBlastX LINE_RTE-X 200621 202603 878 + . . scaffold43446 GLEAN mRNA 175111 204349 0.996568 - . ID=CGI_10010404; scaffold40786 WUBlastX LINE_L2 41572 41676 23 + . . scaffold40786 GLEAN mRNA 22180 42004 0.650709 + . ID=CGI_10004440; scaffold40786 WUBlastX LINE_L2 41639 42004 113 + . . scaffold40786 GLEAN mRNA 22180 42004 0.650709 + . ID=CGI_10004440; scaffold400 WUBlastX LINE_L2 264815 265330 107 - . . scaffold400 GLEAN mRNA 262709 267661 0.544852 - . ID=CGI_10011440; scaffold257 WUBlastX LINE_RTE-X 318558 319394 52 + . . scaffold257 GLEAN mRNA 306483 324339 0.999073 + . ID=CGI_10027906; scaffold37148 WUBlastX LINE_RTE-BovB 10384 10992 44 + . . scaffold37148 GLEAN mRNA 9385 30637 0.645987 - . ID=CGI_10002291; scaffold37148 WUBlastX LINE_RTE-BovB 11030 11209 69 + . . scaffold37148 GLEAN mRNA 9385 30637 0.645987 - . ID=CGI_10002291; scaffold43182 WUBlastX LTR_Gypsy 169423 169950 145 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold610 WUBlastX LTR_Gypsy 128880 129476 85 - . . scaffold610 GLEAN mRNA 126484 141606 0.728666 + . ID=CGI_10021092; scaffold579 WUBlastX DNA_MuDR 76520 77752 125 - . . scaffold579 GLEAN mRNA 74827 78935 0.999224 - . ID=CGI_10011260; scaffold43538 WUBlastX LTR_Gypsy-Cigr 33559 34578 498 + . . scaffold43538 GLEAN mRNA 31086 35366 0.988787 - . ID=CGI_10010813; scaffold241 WUBlastX LINE_L1 124830 125000 62 - . . scaffold241 GLEAN mRNA 108603 137659 0.55536 + . ID=CGI_10025092; scaffold828 WUBlastX LTR_Gypsy 95826 96260 31 - . . scaffold828 GLEAN mRNA 93404 108093 0.999999 - . ID=CGI_10007366; scaffold1264 WUBlastX LINE_L1 135433 136242 326 + . . scaffold1264 GLEAN mRNA 129263 151960 0.5 - . ID=CGI_10007176; scaffold410 WUBlastX LINE_RTE-BovB 262869 263051 43 + . . scaffold410 GLEAN mRNA 261101 270903 0.399222 + . ID=CGI_10020632; scaffold1179 WUBlastX DNA_Harbinger 17862 18113 43 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold1578 WUBlastX LTR_Pao 65862 66473 116 + . . scaffold1578 GLEAN mRNA 44226 72498 0.998909 - . ID=CGI_10008160; scaffold676 WUBlastX LINE_RTE-X 576773 577015 75 - . . scaffold676 GLEAN mRNA 560023 599101 0.378138 + . ID=CGI_10021432; scaffold1734 WUBlastX LINE_L2 153991 154467 197 - . . scaffold1734 GLEAN mRNA 152020 160994 0.46186 + . ID=CGI_10010541; scaffold896 WUBlastX LINE_L1-Tx1 247728 247862 51 + . . scaffold896 GLEAN mRNA 238310 251019 0.969948 - . ID=CGI_10022839; scaffold1865 WUBlastX LINE_RTE-X 293053 293616 67 + . . scaffold1865 GLEAN mRNA 265949 318343 0.640148 - . ID=CGI_10013547; scaffold37880 WUBlastX DNA_Harbinger 26292 26501 130 + . . scaffold37880 GLEAN mRNA 25813 26910 0.999833 + . ID=CGI_10002534; scaffold1255 WUBlastX DNA_Kolobok 4244 4744 53 - . . scaffold1255 GLEAN mRNA 3472 8230 0.999979 - . ID=CGI_10018055; scaffold911 WUBlastX LINE_L1-Tx1 162390 162596 27 - . . scaffold911 GLEAN mRNA 159613 170351 0.499121 + . ID=CGI_10012141; scaffold1772 WUBlastX LTR_DIRS 202134 202256 69 - . . scaffold1772 GLEAN mRNA 201858 204314 0.999554 - . ID=CGI_10014812; scaffold1785 WUBlastX LINE_RTE-X 22358 22780 168 + . . scaffold1785 GLEAN mRNA 6322 29997 0.294917 - . ID=CGI_10024349; scaffold1785 WUBlastX LINE_RTE-X 22795 24087 108 + . . scaffold1785 GLEAN mRNA 6322 29997 0.294917 - . ID=CGI_10024349; scaffold1244 WUBlastX LTR_Gypsy 124425 124466 20 - . . scaffold1244 GLEAN mRNA 121009 134472 0.646055 + . ID=CGI_10020823; scaffold664 WUBlastX LTR_Pao 649137 649508 190 + . . scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold39858 WUBlastX DNA_Kolobok 11319 11366 104 - . . scaffold39858 GLEAN mRNA 10188 11366 1 - . ID=CGI_10003659; scaffold42766 WUBlastX DNA_hAT-Tip100 5309 5530 34 - . . scaffold42766 GLEAN mRNA 582 5602 0.982593 - . ID=CGI_10007660; scaffold221 WUBlastX DNA_Harbinger 79166 79528 281 - . . scaffold221 GLEAN mRNA 79166 80425 0.999137 - . ID=CGI_10008344; scaffold35902 WUBlastX LINE_L1-Tx1 27589 28083 422 + . . scaffold35902 GLEAN mRNA 22250 28263 0.990718 - . ID=CGI_10001652; scaffold1050 WUBlastX DNA_hAT 217320 217526 53 + . . scaffold1050 GLEAN mRNA 214951 218048 0.349007 + . ID=CGI_10009182; scaffold743 WUBlastX LINE_RTE-X 107204 107767 69 - . . scaffold743 GLEAN mRNA 83791 109134 0.449406 + . ID=CGI_10008614; scaffold286 WUBlastX DNA_Kolobok 208168 208365 121 + . . scaffold286 GLEAN mRNA 207114 209601 0.577193 + . ID=CGI_10015965; scaffold286 WUBlastX DNA_Kolobok 208522 208674 61 + . . scaffold286 GLEAN mRNA 207114 209601 0.577193 + . ID=CGI_10015965; scaffold286 WUBlastX DNA_Kolobok 208881 209042 84 + . . scaffold286 GLEAN mRNA 207114 209601 0.577193 + . ID=CGI_10015965; scaffold286 WUBlastX DNA_Kolobok 209128 209268 52 + . . scaffold286 GLEAN mRNA 207114 209601 0.577193 + . ID=CGI_10015965; scaffold828 WUBlastX LTR_Gypsy 95976 97124 212 - . . scaffold828 GLEAN mRNA 93404 108093 0.999999 - . ID=CGI_10007366; scaffold828 WUBlastX LTR_Gypsy 97448 97891 222 - . . scaffold828 GLEAN mRNA 93404 108093 0.999999 - . ID=CGI_10007366; scaffold168 WUBlastX LINE_RTE-X 586669 587613 631 - . . scaffold168 GLEAN mRNA 580127 599947 0.430988 + . ID=CGI_10025600; scaffold43538 WUBlastX LTR_Gypsy 10686 11165 69 + . . scaffold43538 GLEAN mRNA 10395 14337 0.902653 + . ID=CGI_10010812; scaffold43538 WUBlastX LTR_Gypsy 11367 11756 290 + . . scaffold43538 GLEAN mRNA 10395 14337 0.902653 + . ID=CGI_10010812; scaffold1255 WUBlastX LTR_Gypsy 393301 393615 35 + . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold550 WUBlastX LTR_Gypsy 193529 193993 294 - . . scaffold550 GLEAN mRNA 192301 204322 0.634785 + . ID=CGI_10012493; scaffold128 WUBlastX LINE_RTE-X 652412 654253 770 + . . scaffold128 GLEAN mRNA 640571 661683 0.836156 - . ID=CGI_10021536; scaffold1 WUBlastX LINE_L2 169134 169247 32 + . . scaffold1 GLEAN mRNA 163980 185527 0.742263 + . ID=CGI_10013469; scaffold1741 WUBlastX LTR_Pao 144653 144787 25 + . . scaffold1741 GLEAN mRNA 144116 145129 0.999285 + . ID=CGI_10024025; scaffold1307 WUBlastX LTR_Gypsy 592071 592307 83 + . . scaffold1307 GLEAN mRNA 586550 596673 0.992394 + . ID=CGI_10023769; scaffold36390 WUBlastX LTR_Gypsy 24270 24376 23 + . . scaffold36390 GLEAN mRNA 24071 24376 0.999984 + . ID=CGI_10001885; scaffold1377 WUBlastX LTR_DIRS 7737 7973 24 - . . scaffold1377 GLEAN mRNA 4634 19279 0.99195 + . ID=CGI_10008617; scaffold728 WUBlastX LTR_Gypsy 105982 106089 22 - . . scaffold728 GLEAN mRNA 80377 108098 0.99809 - . ID=CGI_10018228; scaffold75 WUBlastX DNA_Harbinger 43381 43518 89 - . . scaffold75 GLEAN mRNA 41103 44837 0.980383 + . ID=CGI_10005789; scaffold6 WUBlastX DNA_Harbinger 611426 611563 89 - . . scaffold6 GLEAN mRNA 604472 612930 0.854712 - . ID=CGI_10022329; scaffold520 WUBlastX LINE_L1 25646 26047 23 + . . scaffold520 GLEAN mRNA 25646 27014 0.984983 + . ID=CGI_10010951; scaffold42568 WUBlastX LINE_L1 9819 9847 24 - . . scaffold42568 GLEAN mRNA 9653 9847 0.999372 + . ID=CGI_10007264; scaffold276 WUBlastX DNA_P 29781 29948 50 - . . scaffold276 GLEAN mRNA 27405 34935 0.425332 - . ID=CGI_10006435; scaffold1098 WUBlastX DNA_TcMar-Marin 232841 232948 55 + . . scaffold1098 GLEAN mRNA 223579 266249 0.353937 - . ID=CGI_10010798; scaffold1245 WUBlastX DNA_TcMar-Marin 104150 104362 49 - . . scaffold1245 GLEAN mRNA 102403 119670 0.989696 - . ID=CGI_10009226; scaffold286 WUBlastX DNA_TcMar-Marin 157244 157441 41 + . . scaffold286 GLEAN mRNA 149274 159610 0.543706 - . ID=CGI_10015961; scaffold1565 WUBlastX LINE_L1-Tx1 7522 7845 73 - . . scaffold1565 GLEAN mRNA 460 9199 1 + . ID=CGI_10000778; scaffold40164 WUBlastX LINE_L1-Tx1 8156 8401 20 + . . scaffold40164 GLEAN mRNA 2839 12364 0.429437 - . ID=CGI_10003898; scaffold313 WUBlastX LINE_L1-Tx1 1018877 1019080 52 - . . scaffold313 GLEAN mRNA 1014206 1026476 0.354197 - . ID=CGI_10026633; scaffold592 WUBlastX DNA_Academ 18815 18910 38 + . . scaffold592 GLEAN mRNA 3363 19316 0.499918 + . ID=CGI_10010700; scaffold592 WUBlastX DNA_Academ 18912 19316 68 + . . scaffold592 GLEAN mRNA 3363 19316 0.499918 + . ID=CGI_10010700; scaffold583 WUBlastX DNA_MuDR 263929 264210 59 - . . scaffold583 GLEAN mRNA 263929 265960 0.540216 - . ID=CGI_10023614; scaffold793 WUBlastX DNA_NOF 67557 67619 32 + . . scaffold793 GLEAN mRNA 61685 72905 0.384935 + . ID=CGI_10010892; scaffold43388 WUBlastX DNA_IS4EU 225842 225991 70 - . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold1704 WUBlastX DNA_Crypton 133428 133763 89 + . . scaffold1704 GLEAN mRNA 130337 165249 0.994715 + . ID=CGI_10010170; scaffold1104 WUBlastX DNA_hAT-hATw 168249 168659 85 - . . scaffold1104 GLEAN mRNA 162897 187197 0.499418 + . ID=CGI_10020361; scaffold42890 WUBlastX DNA_hAT-hATw 182355 182765 41 - . . scaffold42890 GLEAN mRNA 182304 199068 0.438528 - . ID=CGI_10008045; scaffold1138 WUBlastX LINE_Jockey 192033 192154 33 - . . scaffold1138 GLEAN mRNA 183755 192154 0.999676 - . ID=CGI_10015373; scaffold150 WUBlastX DNA_Kolobok-Hyd 1215922 1215996 42 + . . scaffold150 GLEAN mRNA 1213916 1217122 0.630659 + . ID=CGI_10028662; scaffold150 WUBlastX DNA_Kolobok-Hyd 1215922 1215996 42 + . . scaffold150 GLEAN mRNA 1205286 1224549 1 - . ID=CGI_10028661; scaffold786 WUBlastX LINE_L1-Tx1 346471 346725 50 + . . scaffold786 GLEAN mRNA 340138 347810 1 + . ID=CGI_10013708; scaffold1301 WUBlastX LTR_Ngaro 319673 319993 38 + . . scaffold1301 GLEAN mRNA 311038 320027 0.984699 - . ID=CGI_10027714; scaffold1307 WUBlastX DNA_IS4EU 11612 11806 31 - . . scaffold1307 GLEAN mRNA 6251 45653 0.745308 + . ID=CGI_10023739; scaffold42804 WUBlastX LINE_L1 158829 159371 39 - . . scaffold42804 GLEAN mRNA 157232 161831 0.799839 - . ID=CGI_10007780; scaffold975 WUBlastX LINE_L1-Tx1 243766 243948 42 - . . scaffold975 GLEAN mRNA 241213 250600 0.499805 - . ID=CGI_10013329; scaffold975 WUBlastX LINE_L1-Tx1 244709 244951 72 - . . scaffold975 GLEAN mRNA 241213 250600 0.499805 - . ID=CGI_10013329; scaffold683 WUBlastX LINE_RTE-X 193580 193972 48 - . . scaffold683 GLEAN mRNA 156724 197942 0.700222 + . ID=CGI_10010360; scaffold1889 WUBlastX LINE_RTE-X 207443 207613 103 + . . scaffold1889 GLEAN mRNA 199666 208024 0.836613 - . ID=CGI_10019608; scaffold536 WUBlastX LINE_RTE-X 88327 88494 56 + . . scaffold536 GLEAN mRNA 68482 93233 0.999348 + . ID=CGI_10006670; scaffold398 WUBlastX LINE_RTE-X 43441 43779 63 - . . scaffold398 GLEAN mRNA 36290 48236 0.999674 + . ID=CGI_10004361; scaffold471 WUBlastX LINE_CR1-L2 199672 199830 26 + . . scaffold471 GLEAN mRNA 193246 236257 0.137865 + . ID=CGI_10027007; scaffold1179 WUBlastX LTR_Gypsy 23243 23401 64 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold1427 WUBlastX DNA_Harbinger 105231 105575 58 - . . scaffold1427 GLEAN mRNA 100689 106671 0.382647 + . ID=CGI_10005232; scaffold39268 WUBlastX DNA_MuDR 64120 64374 82 + . . scaffold39268 GLEAN mRNA 61831 68309 0.898511 + . ID=CGI_10003276; scaffold358 WUBlastX LINE_RTE-X 137370 137531 55 + . . scaffold358 GLEAN mRNA 127311 138997 0.861912 - . ID=CGI_10013024; scaffold35444 WUBlastX LTR_Gypsy 5940 6185 53 - . . scaffold35444 GLEAN mRNA 591 6430 0.999654 - . ID=CGI_10001555; scaffold1818 WUBlastX DNA_Zator 42744 42893 46 - . . scaffold1818 GLEAN mRNA 7577 56224 0.992021 - . ID=CGI_10003625; scaffold619 WUBlastX DNA_hAT-Ac 487692 487925 20 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold165 WUBlastX LTR_Pao 197644 198333 30 - . . scaffold165 GLEAN mRNA 195130 200984 1 + . ID=CGI_10015323; scaffold298 WUBlastX LTR_Gypsy 281144 281383 80 - . . scaffold298 GLEAN mRNA 275559 284249 0.999682 - . ID=CGI_10018823; scaffold178 WUBlastX LINE_Penelope 104689 104937 32 - . . scaffold178 GLEAN mRNA 95706 112577 0.461285 - . ID=CGI_10004828; scaffold1028 WUBlastX LINE_RTE-X 42407 42739 48 + . . scaffold1028 GLEAN mRNA 38359 105235 0.597726 - . ID=CGI_10009718; scaffold772 WUBlastX DNA_PiggyBac 283352 283471 69 + . . scaffold772 GLEAN mRNA 277746 285976 1 + . ID=CGI_10016590; scaffold385 WUBlastX LINE_CR1 138372 138572 39 + . . scaffold385 GLEAN mRNA 126563 138970 0.944104 - . ID=CGI_10011596; scaffold272 WUBlastX LINE_L2 45158 45787 91 + . . scaffold272 GLEAN mRNA 32744 62954 0.999882 + . ID=CGI_10003057; scaffold61 WUBlastX DNA_Academ 165774 167135 395 - . . scaffold61 GLEAN mRNA 164819 186758 0.205101 - . ID=CGI_10016346; scaffold286 WUBlastX LTR_Pao 288316 288621 183 - . . scaffold286 GLEAN mRNA 282191 289004 0.700364 - . ID=CGI_10015966; scaffold544 WUBlastX LTR_DIRS 563682 564062 156 + . . scaffold544 GLEAN mRNA 559869 574687 0.998045 - . ID=CGI_10022574; scaffold1634 WUBlastX LTR_Ngaro 84558 85061 87 - . . scaffold1634 GLEAN mRNA 82464 85496 0.992943 + . ID=CGI_10005152; scaffold1031 WUBlastX DNA_Kolobok-IS4 206913 207350 148 + . . scaffold1031 GLEAN mRNA 202896 208011 0.999658 - . ID=CGI_10019698; scaffold1800 WUBlastX LTR_Gypsy 8423 8662 31 + . . scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; scaffold286 WUBlastX DNA_TcMar-Tc1 434257 434424 66 - . . scaffold286 GLEAN mRNA 423114 437338 0.999999 - . ID=CGI_10015973; scaffold286 WUBlastX DNA_TcMar-Tc1 434257 434424 66 - . . scaffold286 GLEAN mRNA 433158 447481 0.525246 + . ID=CGI_10015974; scaffold102 WUBlastX LINE_RTE-BovB 984697 985278 131 + . . scaffold102 GLEAN mRNA 961541 993549 0.838657 - . ID=CGI_10028460; scaffold1409 WUBlastX LINE_L1-Tx1 336901 337482 29 - . . scaffold1409 GLEAN mRNA 329296 337932 0.994281 + . ID=CGI_10013793; scaffold1409 WUBlastX LINE_L1-Tx1 336901 337482 29 - . . scaffold1409 GLEAN mRNA 324495 351305 0.918932 - . ID=CGI_10013791; scaffold980 WUBlastX DNA_Academ 242261 242881 299 - . . scaffold980 GLEAN mRNA 242201 242902 0.579788 - . ID=CGI_10019217; scaffold980 WUBlastX DNA_Academ 242879 242902 297 - . . scaffold980 GLEAN mRNA 242201 242902 0.579788 - . ID=CGI_10019217; scaffold499 WUBlastX LTR_Ngaro 25568 25816 85 + . . scaffold499 GLEAN mRNA 22718 44589 1 + . ID=CGI_10015760; scaffold20 WUBlastX LINE_RTE-X 30118 30786 61 + . . scaffold20 GLEAN mRNA 25974 32204 0.614933 - . ID=CGI_10023556; scaffold20 WUBlastX LINE_RTE-X 30118 30786 61 + . . scaffold20 GLEAN mRNA 28495 32289 0.880534 + . ID=CGI_10023557; scaffold1754 WUBlastX LINE_L1 128485 129000 126 + . . scaffold1754 GLEAN mRNA 124608 131066 0.788238 + . ID=CGI_10009580; scaffold39240 WUBlastX DNA_MuDR 37254 37517 40 + . . scaffold39240 GLEAN mRNA 34664 37858 0.999618 - . ID=CGI_10003247; scaffold128 WUBlastX LINE_RTE-X 122186 122311 82 + . . scaffold128 GLEAN mRNA 119795 124529 0.290216 - . ID=CGI_10021509; scaffold38552 WUBlastX DNA_TcMar-Tc2 40930 41754 196 + . . scaffold38552 GLEAN mRNA 40163 55847 0.999674 + . ID=CGI_10002839; scaffold453 WUBlastX LTR_Gypsy 304146 304346 190 + . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold42530 WUBlastX LINE_L2 46393 46533 22 + . . scaffold42530 GLEAN mRNA 44450 55395 0.966018 + . ID=CGI_10007161; scaffold885 WUBlastX DNA_Kolobok 12602 12733 24 + . . scaffold885 GLEAN mRNA 11627 19636 0.352613 - . ID=CGI_10025184; scaffold847 WUBlastX LINE_L1-Tx1 705578 706153 30 - . . scaffold847 GLEAN mRNA 701746 708200 0.916724 - . ID=CGI_10022288; C35532 WUBlastX LTR_Ngaro 15177 15908 178 - . . C35532 GLEAN mRNA 11931 21500 0.999947 - . ID=CGI_10001547; scaffold40556 WUBlastX LTR_Gypsy-Cigr 12849 13145 49 + . . scaffold40556 GLEAN mRNA 9810 16493 0.715629 - . ID=CGI_10004250; scaffold1188 WUBlastX LTR_Ngaro 290297 290761 190 + . . scaffold1188 GLEAN mRNA 281129 295835 0.924496 + . ID=CGI_10025467; scaffold39134 WUBlastX LTR_Gypsy 50110 50523 83 + . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold164 WUBlastX LTR_Gypsy 53776 53970 88 - . . scaffold164 GLEAN mRNA 40628 54980 0.99473 - . ID=CGI_10021845; scaffold1680 WUBlastX LTR_Gypsy 71324 73489 1396 + . . scaffold1680 GLEAN mRNA 60137 87573 0.648461 - . ID=CGI_10004140; scaffold38974 WUBlastX DNA_Kolobok 19548 19787 103 - . . scaffold38974 GLEAN mRNA 18623 32076 0.703347 + . ID=CGI_10003119; scaffold38974 WUBlastX DNA_Kolobok 21300 21515 107 - . . scaffold38974 GLEAN mRNA 18623 32076 0.703347 + . ID=CGI_10003119; scaffold1873 WUBlastX LINE_L1-Tx1 64858 65385 198 + . . scaffold1873 GLEAN mRNA 42995 66497 0.656652 + . ID=CGI_10009291; scaffold1715 WUBlastX LINE_CR1-L2 568809 569267 245 + . . scaffold1715 GLEAN mRNA 550177 572188 0.407691 + . ID=CGI_10019686; scaffold305 WUBlastX DNA_hAT 513958 515334 319 - . . scaffold305 GLEAN mRNA 513670 520927 0.837081 - . ID=CGI_10019146; scaffold39212 WUBlastX DNA_Sola 46061 46516 98 - . . scaffold39212 GLEAN mRNA 30679 56961 0.415387 - . ID=CGI_10003233; scaffold780 WUBlastX LTR_Ngaro 967270 967527 105 - . . scaffold780 GLEAN mRNA 959842 972028 0.999936 - . ID=CGI_10024749; scaffold780 WUBlastX LTR_Ngaro 967704 968060 172 - . . scaffold780 GLEAN mRNA 959842 972028 0.999936 - . ID=CGI_10024749; scaffold780 WUBlastX LTR_Ngaro 968065 968241 60 - . . scaffold780 GLEAN mRNA 959842 972028 0.999936 - . ID=CGI_10024749; scaffold917 WUBlastX DNA_Kolobok-IS4 149169 149921 322 - . . scaffold917 GLEAN mRNA 121193 151265 0.227919 + . ID=CGI_10011083; scaffold41162 WUBlastX LTR_Gypsy 90045 90170 113 - . . scaffold41162 GLEAN mRNA 73852 107906 0.526733 + . ID=CGI_10004777; scaffold393 WUBlastX DNA_Harbinger 1056903 1057622 278 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold393 WUBlastX DNA_Harbinger 1057589 1057765 71 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold1897 WUBlastX LINE_RTE-X 201622 201771 50 + . . scaffold1897 GLEAN mRNA 190471 249775 0.317357 - . ID=CGI_10020917; scaffold162 WUBlastX LINE_L1-Tx1 50658 52097 207 - . . scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; scaffold1484 WUBlastX LTR_Ngaro 108710 108934 53 - . . scaffold1484 GLEAN mRNA 103851 118273 0.818682 - . ID=CGI_10013260; scaffold1097 WUBlastX LINE_RTE-BovB 682060 682173 60 - . . scaffold1097 GLEAN mRNA 671182 687187 0.811238 + . ID=CGI_10024541; scaffold1097 WUBlastX LTR_Gypsy 863337 863507 37 + . . scaffold1097 GLEAN mRNA 848149 863853 0.999116 + . ID=CGI_10024555; scaffold38464 WUBlastX LTR_Ngaro 31268 31753 337 - . . scaffold38464 GLEAN mRNA 29156 32869 1 - . ID=CGI_10002793; scaffold38464 WUBlastX LTR_Ngaro 31738 31998 89 - . . scaffold38464 GLEAN mRNA 29156 32869 1 - . ID=CGI_10002793; scaffold1423 WUBlastX LTR_Ngaro 1058814 1060424 784 + . . scaffold1423 GLEAN mRNA 1057538 1060967 0.980388 + . ID=CGI_10025454; scaffold37794 WUBlastX DNA_hAT-Tip100 34665 34982 45 - . . scaffold37794 GLEAN mRNA 31174 37793 0.544852 + . ID=CGI_10002501; scaffold1052 WUBlastX LINE_L2 79658 79725 60 - . . scaffold1052 GLEAN mRNA 59893 79725 0.988141 - . ID=CGI_10005470; scaffold194 WUBlastX DNA_Crypton 260953 261225 48 - . . scaffold194 GLEAN mRNA 249396 274108 0.709931 + . ID=CGI_10011068; scaffold1037 WUBlastX LTR_DIRS? 344505 344780 74 + . . scaffold1037 GLEAN mRNA 341684 347440 0.722718 + . ID=CGI_10017464; scaffold90 WUBlastX DNA_hAT-Tip100 396842 397009 46 - . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold1132 WUBlastX LTR_Gypsy 718758 719192 45 - . . scaffold1132 GLEAN mRNA 715893 721077 0.813716 - . ID=CGI_10023330; scaffold162 WUBlastX LINE_L2 53005 53100 30 - . . scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; scaffold559 WUBlastX DNA_P 36254 36535 57 + . . scaffold559 GLEAN mRNA 36227 37772 1 + . ID=CGI_10003340; scaffold191 WUBlastX DNA_P 574428 574643 31 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; C34110 WUBlastX DNA_P 11168 11380 44 + . . C34110 GLEAN mRNA 2583 15463 0.431065 - . ID=CGI_10001212; scaffold86 WUBlastX DNA_Kolobok-Hyd 698928 699368 41 + . . scaffold86 GLEAN mRNA 698775 699680 0.946427 + . ID=CGI_10028168; scaffold672 WUBlastX LINE_RTE-X 641471 642130 29 - . . scaffold672 GLEAN mRNA 640658 642373 0.629162 - . ID=CGI_10021055; scaffold1179 WUBlastX DNA_PiggyBac 1335160 1335432 38 - . . scaffold1179 GLEAN mRNA 1333065 1336155 0.976862 - . ID=CGI_10027422; scaffold1639 WUBlastX DNA_Maverick 123984 124109 38 - . . scaffold1639 GLEAN mRNA 120498 127273 1 - . ID=CGI_10005443; scaffold544 WUBlastX LINE_RTE-X 562452 562577 66 - . . scaffold544 GLEAN mRNA 559869 574687 0.998045 - . ID=CGI_10022574; scaffold39014 WUBlastX DNA_Harbinger 62650 62859 39 + . . scaffold39014 GLEAN mRNA 61763 62871 0.6936 + . ID=CGI_10003136; scaffold1359 WUBlastX DNA_IS4EU 231420 231436 27 + . . scaffold1359 GLEAN mRNA 231045 231436 1 - . ID=CGI_10013244; scaffold1104 WUBlastX DNA_IS4EU 529086 529271 69 - . . scaffold1104 GLEAN mRNA 524853 533185 0.523865 + . ID=CGI_10020392; C33368 WUBlastX DNA_Kolobok-Hyd 7390 7734 70 + . . C33368 GLEAN mRNA 2894 7917 0.564757 + . ID=CGI_10001057; scaffold351 WUBlastX LTR_Ngaro 88836 89093 64 - . . scaffold351 GLEAN mRNA 80647 91796 0.490582 - . ID=CGI_10022590; scaffold585 WUBlastX LINE_RTE-BovB 106902 107078 101 + . . scaffold585 GLEAN mRNA 91313 107443 0.999351 - . ID=CGI_10005541; scaffold39778 WUBlastX LINE_RTE-X 62638 62955 73 - . . scaffold39778 GLEAN mRNA 56712 68685 0.806384 - . ID=CGI_10003612; scaffold563 WUBlastX LINE_Penelope 224070 224426 49 - . . scaffold563 GLEAN mRNA 221021 229296 0.703326 - . ID=CGI_10019825; scaffold41816 WUBlastX LINE_L1 88710 89267 75 - . . scaffold41816 GLEAN mRNA 84334 89370 0.999542 + . ID=CGI_10005649; scaffold290 WUBlastX LINE_RTE-X 188076 188231 63 + . . scaffold290 GLEAN mRNA 184166 208505 0.688957 - . ID=CGI_10018539; scaffold807 WUBlastX LTR_DIRS 164808 164914 68 + . . scaffold807 GLEAN mRNA 164808 174139 0.351868 + . ID=CGI_10011458; scaffold70 WUBlastX LINE_L2 612685 612807 25 + . . scaffold70 GLEAN mRNA 605933 624830 0.814164 - . ID=CGI_10024778; scaffold635 WUBlastX LTR_Gypsy 116393 116611 41 - . . scaffold635 GLEAN mRNA 115264 124278 0.98729 - . ID=CGI_10008922; scaffold591 WUBlastX DNA_PiggyBac 726146 726229 58 + . . scaffold591 GLEAN mRNA 721166 806574 0.987378 - . ID=CGI_10027581; scaffold1760 WUBlastX LINE_L1-Tx1 35437 35811 72 + . . scaffold1760 GLEAN mRNA 10471 43998 0.994763 + . ID=CGI_10002757; scaffold556 WUBlastX LINE_L1-Tx1 194300 194506 49 + . . scaffold556 GLEAN mRNA 194019 202410 0.999351 - . ID=CGI_10016802; scaffold825 WUBlastX LINE_L1-Tx1 197046 197429 64 - . . scaffold825 GLEAN mRNA 194651 220674 0.998225 + . ID=CGI_10012712; scaffold1121 WUBlastX DNA_hAT-Tip100 140752 140997 94 - . . scaffold1121 GLEAN mRNA 136074 147948 0.722367 - . ID=CGI_10006507; scaffold579 WUBlastX DNA_TcMar-Tc1 207241 207567 52 + . . scaffold579 GLEAN mRNA 193436 221323 0.863149 + . ID=CGI_10011264; scaffold38750 WUBlastX LINE_RTE-X 3957 4256 73 + . . scaffold38750 GLEAN mRNA 2403 8066 0.927797 + . ID=CGI_10002953; scaffold885 WUBlastX DNA_Kolobok 13765 14010 136 - . . scaffold885 GLEAN mRNA 11627 19636 0.352613 - . ID=CGI_10025184; scaffold1714 WUBlastX LINE_I 311581 311868 65 - . . scaffold1714 GLEAN mRNA 306589 325335 0.999557 + . ID=CGI_10013680; scaffold30814 WUBlastX LINE_RTE-X 7682 7873 45 - . . scaffold30814 GLEAN mRNA 3529 8232 0.998023 - . ID=CGI_10000671; scaffold780 WUBlastX LTR_Ngaro 965113 965403 100 + . . scaffold780 GLEAN mRNA 959842 972028 0.999936 - . ID=CGI_10024749; scaffold536 WUBlastX LINE_RTE-X 85992 86513 66 - . . scaffold536 GLEAN mRNA 68482 93233 0.999348 + . ID=CGI_10006670; scaffold402 WUBlastX LINE_L1-Tx1 523747 524049 113 - . . scaffold402 GLEAN mRNA 514262 530560 0.999749 + . ID=CGI_10019333; scaffold41954 WUBlastX LINE_L1 102339 102671 42 - . . scaffold41954 GLEAN mRNA 93049 113682 0.989895 + . ID=CGI_10005853; scaffold62 WUBlastX LTR_DIRS 23210 23467 112 + . . scaffold62 GLEAN mRNA 11522 26854 1 - . ID=CGI_10015703; scaffold1036 WUBlastX DNA_IS4EU 67913 68215 61 + . . scaffold1036 GLEAN mRNA 62334 73775 0.755696 - . ID=CGI_10019943; scaffold204 WUBlastX LINE_L1-Tx1 638082 638684 43 - . . scaffold204 GLEAN mRNA 632848 639424 1 + . ID=CGI_10026121; scaffold1600 WUBlastX LTR_DIRS 184574 184669 22 + . . scaffold1600 GLEAN mRNA 179369 186583 0.98626 + . ID=CGI_10013038; scaffold1600 WUBlastX LTR_DIRS 184574 184669 22 + . . scaffold1600 GLEAN mRNA 182749 197532 0.996574 - . ID=CGI_10013039; scaffold1600 WUBlastX LTR_DIRS 185827 186168 55 + . . scaffold1600 GLEAN mRNA 179369 186583 0.98626 + . ID=CGI_10013038; scaffold1600 WUBlastX LTR_DIRS 185827 186168 55 + . . scaffold1600 GLEAN mRNA 182749 197532 0.996574 - . ID=CGI_10013039; scaffold793 WUBlastX DNA_MuDR 63663 63794 53 + . . scaffold793 GLEAN mRNA 61685 72905 0.384935 + . ID=CGI_10010892; scaffold36450 WUBlastX RC_Helitron 5874 8036 239 + . . scaffold36450 GLEAN mRNA 3992 12302 0.990019 + . ID=CGI_10001979; scaffold33980 WUBlastX DNA_hAT-Tip100 3548 3910 94 + . . scaffold33980 GLEAN mRNA 2151 15835 0.664854 + . ID=CGI_10001168; scaffold602 WUBlastX DNA_Harbinger 612218 612406 67 + . . scaffold602 GLEAN mRNA 583910 615175 0.1397 + . ID=CGI_10023196; scaffold42840 WUBlastX DNA_TcMar-Marin 185706 185801 45 - . . scaffold42840 GLEAN mRNA 176465 192129 0.833079 - . ID=CGI_10007840; scaffold42840 WUBlastX DNA_TcMar-Marin 185845 185991 32 - . . scaffold42840 GLEAN mRNA 176465 192129 0.833079 - . ID=CGI_10007840; scaffold31538 WUBlastX DNA_Maverick 6178 7914 252 - . . scaffold31538 GLEAN mRNA 4012 9466 0.997845 - . ID=CGI_10000765; scaffold31538 WUBlastX DNA_Maverick 4150 5217 556 - . . scaffold31538 GLEAN mRNA 4012 9466 0.997845 - . ID=CGI_10000765; scaffold31538 WUBlastX DNA_Maverick 5584 5862 136 - . . scaffold31538 GLEAN mRNA 4012 9466 0.997845 - . ID=CGI_10000765; scaffold31388 WUBlastX DNA_Zator 4357 4668 113 - . . scaffold31388 GLEAN mRNA 4345 8298 0.644139 - . ID=CGI_10000740; scaffold31388 WUBlastX DNA_Zator 5109 5339 82 - . . scaffold31388 GLEAN mRNA 4345 8298 0.644139 - . ID=CGI_10000740; scaffold31388 WUBlastX DNA_Zator 5648 6169 207 - . . scaffold31388 GLEAN mRNA 4345 8298 0.644139 - . ID=CGI_10000740; scaffold31388 WUBlastX DNA_Zator 6145 7962 645 - . . scaffold31388 GLEAN mRNA 4345 8298 0.644139 - . ID=CGI_10000740; scaffold40420 WUBlastX LINE_CR1 41003 41650 93 + . . scaffold40420 GLEAN mRNA 36191 42467 1 - . ID=CGI_10004098; scaffold77 WUBlastX LINE_L1-Tx1 1120297 1120536 57 - . . scaffold77 GLEAN mRNA 1111468 1123998 0.545449 + . ID=CGI_10028021; scaffold40282 WUBlastX LTR_Gypsy 74180 74785 240 - . . scaffold40282 GLEAN mRNA 56091 83549 0.539379 + . ID=CGI_10004002; scaffold40282 WUBlastX LTR_Gypsy 75081 75707 447 - . . scaffold40282 GLEAN mRNA 56091 83549 0.539379 + . ID=CGI_10004002; scaffold1301 WUBlastX LTR_Ngaro 316577 317398 48 + . . scaffold1301 GLEAN mRNA 311038 320027 0.984699 - . ID=CGI_10027714; scaffold42790 WUBlastX LINE_Penelope 186985 187620 100 - . . scaffold42790 GLEAN mRNA 181485 188091 0.999947 - . ID=CGI_10007719; scaffold54 WUBlastX LTR_Gypsy-Cigr 83135 83347 136 + . . scaffold54 GLEAN mRNA 79485 84388 0.939929 + . ID=CGI_10023654; scaffold43686 WUBlastX LINE_CR1 16492 16926 437 - . . scaffold43686 GLEAN mRNA 15165 50110 0.498897 + . ID=CGI_10011753; scaffold36526 WUBlastX LINE_L1-Tx1 21169 21438 52 - . . scaffold36526 GLEAN mRNA 10575 29087 0.999676 + . ID=CGI_10002008; scaffold544 WUBlastX LTR_Gypsy 728423 728794 88 - . . scaffold544 GLEAN mRNA 727518 748903 0.982522 - . ID=CGI_10022583; scaffold63 WUBlastX DNA_En-Spm 418402 418569 169 + . . scaffold63 GLEAN mRNA 418402 418698 0.634433 + . ID=CGI_10017282; scaffold63 WUBlastX DNA_En-Spm 417322 418569 169 + . . scaffold63 GLEAN mRNA 406163 425324 1 - . ID=CGI_10017281; scaffold35994 WUBlastX DNA_PiggyBac 12478 12960 150 - . . scaffold35994 GLEAN mRNA 1476 13595 0.650997 + . ID=CGI_10001674; scaffold490 WUBlastX DNA_TcMar-Fot1 115957 116517 255 - . . scaffold490 GLEAN mRNA 110595 119533 0.717521 + . ID=CGI_10009162; scaffold847 WUBlastX LINE_RTE-X 282126 282344 64 - . . scaffold847 GLEAN mRNA 273681 282893 0.998253 - . ID=CGI_10022270; scaffold43396 WUBlastX LTR_Ngaro 235006 235293 137 - . . scaffold43396 GLEAN mRNA 229822 241717 0.993815 + . ID=CGI_10010156; scaffold968 WUBlastX LINE_CR1 119373 120161 201 + . . scaffold968 GLEAN mRNA 110087 120737 0.425641 + . ID=CGI_10006297; scaffold1347 WUBlastX DNA_Maverick 325326 326024 261 + . . scaffold1347 GLEAN mRNA 315464 333991 0.924019 + . ID=CGI_10012984; scaffold38048 WUBlastX DNA_TcMar-Tc1 33495 34211 257 + . . scaffold38048 GLEAN mRNA 5473 39952 0.557382 + . ID=CGI_10002589; scaffold1016 WUBlastX LINE_L1-Tx1 308211 308345 56 + . . scaffold1016 GLEAN mRNA 305223 309571 0.991277 - . ID=CGI_10016894; scaffold230 WUBlastX LINE_Penelope 210109 210501 100 + . . scaffold230 GLEAN mRNA 178498 220276 0.270873 - . ID=CGI_10011252; scaffold43150 WUBlastX LINE_RTE-BovB 107835 108650 142 + . . scaffold43150 GLEAN mRNA 101388 111532 0.998791 - . ID=CGI_10009032; scaffold42740 WUBlastX DNA_Harbinger 77045 77107 24 - . . scaffold42740 GLEAN mRNA 65305 90130 0.999494 + . ID=CGI_10007608; scaffold42740 WUBlastX DNA_Harbinger 77045 77107 24 - . . scaffold42740 GLEAN mRNA 75816 93610 0.249736 - . ID=CGI_10007609; scaffold1127 WUBlastX LINE_L1-Tx1 19774 19947 44 - . . scaffold1127 GLEAN mRNA 44 22807 0.494799 - . ID=CGI_10010645; scaffold42656 WUBlastX LINE_L1-Tx1 63248 63796 119 - . . scaffold42656 GLEAN mRNA 57925 65294 1 - . ID=CGI_10007413; scaffold42656 WUBlastX LINE_L1-Tx1 63780 63860 25 - . . scaffold42656 GLEAN mRNA 57925 65294 1 - . ID=CGI_10007413; scaffold1866 WUBlastX LINE_CR1-L2 205703 205906 31 + . . scaffold1866 GLEAN mRNA 197037 209666 0.769721 - . ID=CGI_10017910; scaffold1866 WUBlastX LINE_CR1-L2 206409 206852 203 + . . scaffold1866 GLEAN mRNA 197037 209666 0.769721 - . ID=CGI_10017910; scaffold599 WUBlastX DNA_IS4EU 465379 466440 394 - . . scaffold599 GLEAN mRNA 453980 472237 0.999985 - . ID=CGI_10021725; scaffold599 WUBlastX DNA_IS4EU 465379 466440 394 - . . scaffold599 GLEAN mRNA 456252 477114 0.953927 + . ID=CGI_10021726; scaffold599 WUBlastX DNA_IS4EU 467549 468610 394 - . . scaffold599 GLEAN mRNA 453980 472237 0.999985 - . ID=CGI_10021725; scaffold599 WUBlastX DNA_IS4EU 467549 468610 394 - . . scaffold599 GLEAN mRNA 456252 477114 0.953927 + . ID=CGI_10021726; scaffold38678 WUBlastX DNA_IS4EU 248 1096 364 - . . scaffold38678 GLEAN mRNA 233 1096 1 - . ID=CGI_10002904; scaffold501 WUBlastX LTR_Gypsy 725199 726368 463 + . . scaffold501 GLEAN mRNA 690007 761178 0.748134 - . ID=CGI_10027530; scaffold1125 WUBlastX LINE_L1-Tx1 275719 276426 213 - . . scaffold1125 GLEAN mRNA 258264 306646 0.367081 + . ID=CGI_10012342; scaffold40186 WUBlastX DNA_TcMar-Tc1 24493 24948 240 - . . scaffold40186 GLEAN mRNA 18331 26539 0.486093 - . ID=CGI_10003927; scaffold40186 WUBlastX DNA_TcMar-Tc1 24891 25229 122 - . . scaffold40186 GLEAN mRNA 18331 26539 0.486093 - . ID=CGI_10003927; scaffold22 WUBlastX LTR_Pao 1073439 1073567 64 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1074496 1074633 81 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold557 WUBlastX LINE_L1 403449 403592 72 + . . scaffold557 GLEAN mRNA 401528 413927 0.99928 + . ID=CGI_10017980; scaffold366 WUBlastX DNA_Harbinger 106924 107355 193 + . . scaffold366 GLEAN mRNA 106879 123133 0.490969 + . ID=CGI_10007776; scaffold386 WUBlastX DNA_Kolobok-IS4 214396 215523 534 - . . scaffold386 GLEAN mRNA 207482 239068 0.43817 - . ID=CGI_10012689; scaffold386 WUBlastX DNA_Kolobok-IS4 216253 216513 54 - . . scaffold386 GLEAN mRNA 207482 239068 0.43817 - . ID=CGI_10012689; scaffold1160 WUBlastX DNA_Sola 361213 363072 571 - . . scaffold1160 GLEAN mRNA 346241 390372 0.989896 + . ID=CGI_10015360; scaffold1844 WUBlastX LINE_RTE-X 125818 126459 350 + . . scaffold1844 GLEAN mRNA 108283 134853 0.924542 + . ID=CGI_10006619; scaffold1844 WUBlastX LINE_RTE-X 126422 126712 114 + . . scaffold1844 GLEAN mRNA 108283 134853 0.924542 + . ID=CGI_10006619; scaffold1844 WUBlastX LINE_RTE-X 126669 127493 161 + . . scaffold1844 GLEAN mRNA 108283 134853 0.924542 + . ID=CGI_10006619; scaffold42046 WUBlastX LINE_L1-Tx1 57960 59843 592 + . . scaffold42046 GLEAN mRNA 51319 68145 1 + . ID=CGI_10006002; scaffold1127 WUBlastX LINE_L1-Tx1 16890 17261 88 - . . scaffold1127 GLEAN mRNA 44 22807 0.494799 - . ID=CGI_10010645; scaffold94 WUBlastX LTR_Gypsy 65314 65772 200 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold156 WUBlastX LINE_L2 721739 721972 49 + . . scaffold156 GLEAN mRNA 716803 736043 0.463925 - . ID=CGI_10026517; scaffold1715 WUBlastX LINE_CR1-L2 337784 337867 25 - . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold1532 WUBlastX LTR_DIRS 1062647 1062688 26 - . . scaffold1532 GLEAN mRNA 1062422 1062688 0.73346 - . ID=CGI_10028279; scaffold1897 WUBlastX DNA_hAT-hATw 526000 526482 25 + . . scaffold1897 GLEAN mRNA 525712 527331 0.995373 + . ID=CGI_10020936; scaffold793 WUBlastX LINE_Penelope 71568 71693 51 + . . scaffold793 GLEAN mRNA 61685 72905 0.384935 + . ID=CGI_10010892; scaffold1245 WUBlastX DNA_TcMar-Marin 104517 104654 61 - . . scaffold1245 GLEAN mRNA 102403 119670 0.989696 - . ID=CGI_10009226; scaffold730 WUBlastX LTR_Gypsy 472084 472680 37 - . . scaffold730 GLEAN mRNA 471418 473037 0.61701 - . ID=CGI_10019905; scaffold42770 WUBlastX LINE_L1-Tx1 25923 26180 74 - . . scaffold42770 GLEAN mRNA 14131 34729 0.562742 - . ID=CGI_10007687; scaffold39212 WUBlastX DNA_hAT-Tip100 56519 56752 37 - . . scaffold39212 GLEAN mRNA 30679 56961 0.415387 - . ID=CGI_10003233; scaffold1546 WUBlastX DNA_TcMar-Tc1 204536 204760 28 - . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold343 WUBlastX LINE_L2 648177 648224 21 - . . scaffold343 GLEAN mRNA 643828 662585 1 - . ID=CGI_10021771; scaffold53 WUBlastX LINE_L1-Tx1 547748 547969 27 - . . scaffold53 GLEAN mRNA 545001 589869 0.567528 + . ID=CGI_10026671; scaffold1164 WUBlastX LINE_L1 309378 309803 23 - . . scaffold1164 GLEAN mRNA 307222 312085 0.957199 - . ID=CGI_10013011; scaffold1399 WUBlastX LINE_L1 33929 34096 31 - . . scaffold1399 GLEAN mRNA 16276 39140 0.996608 + . ID=CGI_10007047; C32444 WUBlastX DNA_Sola 6586 6924 73 + . . C32444 GLEAN mRNA 2136 9566 0.999221 + . ID=CGI_10000894; scaffold1350 WUBlastX LINE_L1-Tx1 399909 400019 55 - . . scaffold1350 GLEAN mRNA 393414 411683 0.728523 + . ID=CGI_10017317; scaffold1350 WUBlastX LINE_L1-Tx1 400121 400549 20 - . . scaffold1350 GLEAN mRNA 393414 411683 0.728523 + . ID=CGI_10017317; scaffold42788 WUBlastX LINE_CR1-L2 26127 26471 21 - . . scaffold42788 GLEAN mRNA 24369 91602 0.998319 - . ID=CGI_10007754; scaffold968 WUBlastX LINE_I 119628 120638 27 + . . scaffold968 GLEAN mRNA 110087 120737 0.425641 + . ID=CGI_10006297; scaffold99 WUBlastX DNA_MuDR 241023 241421 62 + . . scaffold99 GLEAN mRNA 235492 241625 0.649382 + . ID=CGI_10021195; scaffold714 WUBlastX DNA_TcMar-Tc1 391465 391905 23 + . . scaffold714 GLEAN mRNA 380562 399951 0.999675 - . ID=CGI_10016647; scaffold1097 WUBlastX LTR_Ngaro 586169 586243 46 + . . scaffold1097 GLEAN mRNA 566282 590466 0.579339 - . ID=CGI_10024535; scaffold1097 WUBlastX LTR_Ngaro 586234 586599 71 + . . scaffold1097 GLEAN mRNA 566282 590466 0.579339 - . ID=CGI_10024535; scaffold1037 WUBlastX LINE_L1-Tx1 212287 212484 79 + . . scaffold1037 GLEAN mRNA 210599 214513 0.72876 + . ID=CGI_10017456; scaffold78 WUBlastX LTR_Gypsy 38648 38788 115 + . . scaffold78 GLEAN mRNA 33688 45299 0.504298 + . ID=CGI_10006914; scaffold557 WUBlastX LINE_L1-Tx1 68165 68524 49 - . . scaffold557 GLEAN mRNA 47116 83012 0.949718 - . ID=CGI_10017966; scaffold88 WUBlastX DNA_hAT-Tip100 5650 5964 53 + . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold1017 WUBlastX LTR_Pao 538869 538973 78 + . . scaffold1017 GLEAN mRNA 538869 545118 1 + . ID=CGI_10025015; scaffold1017 WUBlastX LTR_Pao 539864 539989 55 + . . scaffold1017 GLEAN mRNA 538869 545118 1 + . ID=CGI_10025015; scaffold1537 WUBlastX LINE_Penelope 8581 8853 78 + . . scaffold1537 GLEAN mRNA 2 9370 0.999999 + . ID=CGI_10001150; scaffold1831 WUBlastX LINE_RTE-BovB 1413 1616 58 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1093 WUBlastX DNA_Sola 424635 425015 58 + . . scaffold1093 GLEAN mRNA 421292 452469 0.981582 + . ID=CGI_10019808; scaffold1017 WUBlastX LINE_L2 403903 404178 76 + . . scaffold1017 GLEAN mRNA 402282 420963 0.940982 - . ID=CGI_10025006; scaffold453 WUBlastX LTR_Gypsy 142426 142716 94 + . . scaffold453 GLEAN mRNA 138101 157244 0.160604 + . ID=CGI_10015041; scaffold723 WUBlastX DNA_Sola 80166 80459 66 + . . scaffold723 GLEAN mRNA 67351 82227 0.542233 + . ID=CGI_10015256; scaffold723 WUBlastX DNA_Sola 80468 80626 54 + . . scaffold723 GLEAN mRNA 67351 82227 0.542233 + . ID=CGI_10015256; scaffold43538 WUBlastX LINE_CR1 154836 155327 30 + . . scaffold43538 GLEAN mRNA 151937 158307 1 - . ID=CGI_10010823; scaffold1800 WUBlastX LTR_Gypsy 312853 313641 76 + . . scaffold1800 GLEAN mRNA 309587 323793 0.999996 + . ID=CGI_10016406; scaffold631 WUBlastX LINE_RTE-X 224650 224889 87 + . . scaffold631 GLEAN mRNA 219246 234334 0.970776 - . ID=CGI_10014178; scaffold780 WUBlastX LINE_RTE-X 229487 229879 33 + . . scaffold780 GLEAN mRNA 205875 237446 0.523885 + . ID=CGI_10024723; scaffold780 WUBlastX LINE_RTE-X 232255 232647 33 + . . scaffold780 GLEAN mRNA 205875 237446 0.523885 + . ID=CGI_10024723; scaffold759 WUBlastX LTR_Gypsy 102138 102866 123 + . . scaffold759 GLEAN mRNA 101001 103047 0.957564 + . ID=CGI_10010775; scaffold419 WUBlastX LINE_I 48237 48638 85 - . . scaffold419 GLEAN mRNA 46988 49900 0.999992 + . ID=CGI_10028319; scaffold867 WUBlastX LINE_RTE-X 497367 497669 22 + . . scaffold867 GLEAN mRNA 490506 500925 0.812964 - . ID=CGI_10026232; scaffold560 WUBlastX LINE_RTE-X 139815 139979 93 - . . scaffold560 GLEAN mRNA 134675 160538 0.941337 + . ID=CGI_10008753; scaffold1347 WUBlastX LINE_RTE-X 141609 141809 88 + . . scaffold1347 GLEAN mRNA 133564 144148 0.49238 + . ID=CGI_10012974; scaffold40836 WUBlastX LINE_RTE-X 83992 84363 115 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold40836 WUBlastX LINE_RTE-X 85309 86283 418 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold41034 WUBlastX LTR_DIRS 58658 58822 24 + . . scaffold41034 GLEAN mRNA 40186 62880 0.65884 + . ID=CGI_10004651; scaffold1710 WUBlastX LINE_RTE-X 216207 216812 24 - . . scaffold1710 GLEAN mRNA 213328 218333 1 - . ID=CGI_10022347; scaffold1860 WUBlastX LINE_L1-Tx1 97743 98312 73 - . . scaffold1860 GLEAN mRNA 86890 98787 0.482927 + . ID=CGI_10013940; scaffold712 WUBlastX DNA_TcMar-Tc1 440729 441148 160 - . . scaffold712 GLEAN mRNA 407397 462275 0.613636 - . ID=CGI_10016489; scaffold1868 WUBlastX LTR_DIRS 151403 152032 132 + . . scaffold1868 GLEAN mRNA 151292 152095 1 + . ID=CGI_10007984; scaffold550 WUBlastX DNA_Harbinger 56129 56221 35 - . . scaffold550 GLEAN mRNA 42295 70110 0.723644 + . ID=CGI_10012483; scaffold60 WUBlastX DNA_Academ 97010 97333 169 - . . scaffold60 GLEAN mRNA 96932 97333 0.999661 - . ID=CGI_10004686; scaffold40420 WUBlastX LINE_CR1 41003 41326 149 + . . scaffold40420 GLEAN mRNA 36191 42467 1 - . ID=CGI_10004098; scaffold1574 WUBlastX LTR_Gypsy 452807 453163 39 + . . scaffold1574 GLEAN mRNA 452128 459537 0.999957 + . ID=CGI_10016335; scaffold730 WUBlastX LINE_RTE-X 267276 267833 120 - . . scaffold730 GLEAN mRNA 262816 271880 0.998589 - . ID=CGI_10019892; scaffold730 WUBlastX LINE_RTE-X 267814 267912 23 - . . scaffold730 GLEAN mRNA 262816 271880 0.998589 - . ID=CGI_10019892; scaffold410 WUBlastX LINE_CR1 263416 265248 1324 + . . scaffold410 GLEAN mRNA 261101 270903 0.399222 + . ID=CGI_10020632; scaffold334 WUBlastX LTR_Gypsy-Troyk 818405 818542 110 - . . scaffold334 GLEAN mRNA 818405 818653 0.645784 - . ID=CGI_10025963; scaffold433 WUBlastX DNA_Maverick 1261584 1261646 28 + . . scaffold433 GLEAN mRNA 1258038 1264095 0.626587 - . ID=CGI_10027122; scaffold1868 WUBlastX LINE_RTE-X 168900 169007 44 + . . scaffold1868 GLEAN mRNA 166977 179463 0.984982 - . ID=CGI_10007985; scaffold1868 WUBlastX LINE_RTE-X 169015 169434 38 + . . scaffold1868 GLEAN mRNA 166977 179463 0.984982 - . ID=CGI_10007985; scaffold142 WUBlastX LINE_CR1 236795 238918 1260 + . . scaffold142 GLEAN mRNA 226750 254431 0.969071 + . ID=CGI_10026760; scaffold602 WUBlastX DNA_Harbinger 616231 616449 43 - . . scaffold602 GLEAN mRNA 616228 617272 1 - . ID=CGI_10023197; scaffold581 WUBlastX LINE_L1-Tx1 17989 18255 69 + . . scaffold581 GLEAN mRNA 8702 32094 0.999834 - . ID=CGI_10013733; scaffold905 WUBlastX LINE_L1 4707 4940 116 + . . scaffold905 GLEAN mRNA 3174 14725 0.840832 + . ID=CGI_10004338; scaffold1352 WUBlastX LINE_RTE-X 403200 403373 45 + . . scaffold1352 GLEAN mRNA 400458 408667 0.333165 + . ID=CGI_10018425; scaffold160 WUBlastX LINE_L1-Tx1 528035 529153 426 + . . scaffold160 GLEAN mRNA 523738 543493 0.85871 - . ID=CGI_10020606; scaffold950 WUBlastX LINE_L2 390733 391242 150 - . . scaffold950 GLEAN mRNA 384027 397632 0.588964 + . ID=CGI_10022929; scaffold1893 WUBlastX DNA_IS4EU 200591 201550 483 + . . scaffold1893 GLEAN mRNA 199713 203993 0.999824 + . ID=CGI_10008861; scaffold1521 WUBlastX DNA_TcMar-Tc1 216817 217437 265 + . . scaffold1521 GLEAN mRNA 212318 231130 0.482046 + . ID=CGI_10017939; scaffold1521 WUBlastX DNA_TcMar-Tc1 217661 217798 72 + . . scaffold1521 GLEAN mRNA 212318 231130 0.482046 + . ID=CGI_10017939; scaffold1329 WUBlastX DNA_hAT-Ac 91963 92553 202 - . . scaffold1329 GLEAN mRNA 77218 94406 0.816606 - . ID=CGI_10015782; scaffold973 WUBlastX DNA_Kolobok-IS4 481620 482351 426 + . . scaffold973 GLEAN mRNA 459812 495219 0.606957 - . ID=CGI_10021557; scaffold1485 WUBlastX DNA_hAT 29632 29778 66 + . . scaffold1485 GLEAN mRNA 29632 31205 1 + . ID=CGI_10003290; scaffold41834 WUBlastX LINE_CR1 75469 75681 27 + . . scaffold41834 GLEAN mRNA 67458 75715 0.396652 + . ID=CGI_10005705; scaffold6 WUBlastX DNA_hAT-Tip100 720757 721296 43 + . . scaffold6 GLEAN mRNA 701995 741494 0.270237 + . ID=CGI_10022334; scaffold485 WUBlastX LTR_Gypsy 289118 289696 31 + . . scaffold485 GLEAN mRNA 284170 290152 0.883286 + . ID=CGI_10024155; scaffold1352 WUBlastX LINE_L1-Tx1 401494 401817 48 + . . scaffold1352 GLEAN mRNA 400458 408667 0.333165 + . ID=CGI_10018425; scaffold86 WUBlastX LTR_Pao 1500391 1500537 42 - . . scaffold86 GLEAN mRNA 1500373 1502880 0.568677 - . ID=CGI_10028217; scaffold867 WUBlastX LTR_Gypsy 883280 883438 31 + . . scaffold867 GLEAN mRNA 875240 884266 0.955659 - . ID=CGI_10026241; scaffold867 WUBlastX LTR_Gypsy 883280 883438 31 + . . scaffold867 GLEAN mRNA 878150 885941 1 + . ID=CGI_10026242; scaffold1024 WUBlastX LTR_Gypsy 681482 681706 38 - . . scaffold1024 GLEAN mRNA 661256 689203 0.701647 - . ID=CGI_10028542; scaffold1886 WUBlastX DNA_Kolobok-IS4 104024 104191 38 - . . scaffold1886 GLEAN mRNA 103288 104796 0.593095 - . ID=CGI_10012886; scaffold1886 WUBlastX DNA_Kolobok-IS4 104275 104700 66 - . . scaffold1886 GLEAN mRNA 103288 104796 0.593095 - . ID=CGI_10012886; scaffold44 WUBlastX DNA_Kolobok-IS4 244181 244684 86 + . . scaffold44 GLEAN mRNA 244151 247724 0.999499 + . ID=CGI_10016827; scaffold1016 WUBlastX LINE_L1 306261 306518 21 + . . scaffold1016 GLEAN mRNA 305223 309571 0.991277 - . ID=CGI_10016894; scaffold1772 WUBlastX LTR_DIRS 202625 203182 61 - . . scaffold1772 GLEAN mRNA 201858 204314 0.999554 - . ID=CGI_10014812; scaffold419 WUBlastX LTR_Copia 680553 680651 32 - . . scaffold419 GLEAN mRNA 671072 685906 0.998967 - . ID=CGI_10028358; scaffold78 WUBlastX LTR_Gypsy-Cigr 38648 38881 111 + . . scaffold78 GLEAN mRNA 33688 45299 0.504298 + . ID=CGI_10006914; scaffold1286 WUBlastX DNA_TcMar-Tc2 31619 31954 70 - . . scaffold1286 GLEAN mRNA 25687 35466 0.660843 + . ID=CGI_10009508; scaffold392 WUBlastX LTR_Gypsy 38338 38472 96 - . . scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; scaffold43146 WUBlastX LINE_L1 196378 196467 21 + . . scaffold43146 GLEAN mRNA 193579 199513 0.963019 - . ID=CGI_10009047; scaffold398 WUBlastX LINE_RTE-X 43372 43683 111 - . . scaffold398 GLEAN mRNA 36290 48236 0.999674 + . ID=CGI_10004361; scaffold40948 WUBlastX LINE_CR1-L2 98627 99028 110 + . . scaffold40948 GLEAN mRNA 83628 99922 0.536967 + . ID=CGI_10004613; scaffold1849 WUBlastX LINE_CR1 84309 85055 142 - . . scaffold1849 GLEAN mRNA 72001 111634 0.818968 - . ID=CGI_10015914; scaffold40072 WUBlastX DNA_Crypton 68980 69189 68 + . . scaffold40072 GLEAN mRNA 59559 75890 0.997172 - . ID=CGI_10003801; scaffold86 WUBlastX LINE_L1 217661 217768 75 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold191 WUBlastX DNA_MuDR 551181 551624 89 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold880 WUBlastX LINE_Penelope 91634 91684 37 + . . scaffold880 GLEAN mRNA 88452 95761 0.999285 + . ID=CGI_10022181; scaffold40208 WUBlastX RC_Helitron 36776 37969 814 + . . scaffold40208 GLEAN mRNA 30839 69631 0.999064 + . ID=CGI_10003954; scaffold40208 WUBlastX RC_Helitron 37962 38708 156 + . . scaffold40208 GLEAN mRNA 30839 69631 0.999064 + . ID=CGI_10003954; scaffold1154 WUBlastX DNA_IS4EU 1080676 1080801 45 - . . scaffold1154 GLEAN mRNA 1080378 1140871 0.124336 - . ID=CGI_10026207; scaffold419 WUBlastX LINE_RTE-X 807513 807827 106 + . . scaffold419 GLEAN mRNA 806382 811629 0.999675 - . ID=CGI_10028368; scaffold1001 WUBlastX LINE_RTE-X 129242 129790 139 - . . scaffold1001 GLEAN mRNA 107697 137690 0.433806 + . ID=CGI_10007119; scaffold251 WUBlastX LTR_DIRS 37075 38733 964 + . . scaffold251 GLEAN mRNA 16871 39741 0.998838 - . ID=CGI_10005216; scaffold251 WUBlastX LTR_DIRS 37075 38733 964 + . . scaffold251 GLEAN mRNA 27105 44764 0.0632149 + . ID=CGI_10005217; scaffold6 WUBlastX LINE_L1-Tx1 187609 188388 597 + . . scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; scaffold6 WUBlastX LINE_L1-Tx1 188411 189070 200 + . . scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; scaffold839 WUBlastX LINE_L1-Tx1 83778 84098 20 - . . scaffold839 GLEAN mRNA 78755 87937 0.999546 - . ID=CGI_10004337; scaffold42246 WUBlastX DNA_hAT 43911 44600 139 + . . scaffold42246 GLEAN mRNA 5727 48525 0.65558 + . ID=CGI_10006474; scaffold43182 WUBlastX LINE_L1-Tx1 172153 172671 140 - . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold1054 WUBlastX LINE_L2 312891 313205 85 + . . scaffold1054 GLEAN mRNA 312606 322566 0.968602 + . ID=CGI_10012967; scaffold169 WUBlastX LTR_Gypsy 630210 630839 342 + . . scaffold169 GLEAN mRNA 628224 637732 0.973288 - . ID=CGI_10022960; scaffold601 WUBlastX LINE_RTE-X 833987 834397 23 + . . scaffold601 GLEAN mRNA 814190 834629 0.512568 + . ID=CGI_10026849; scaffold705 WUBlastX LINE_L1-Tx1 407098 409239 1092 + . . scaffold705 GLEAN mRNA 397843 425733 0.998279 - . ID=CGI_10015520; scaffold705 WUBlastX LINE_L1-Tx1 409791 410612 85 + . . scaffold705 GLEAN mRNA 397843 425733 0.998279 - . ID=CGI_10015520; scaffold39972 WUBlastX LTR_Gypsy 53282 53539 49 - . . scaffold39972 GLEAN mRNA 49348 55126 0.885383 + . ID=CGI_10003709; scaffold1067 WUBlastX LINE_L1-Tx1 107568 108026 145 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold115 WUBlastX LINE_RTE-X 129845 130600 159 - . . scaffold115 GLEAN mRNA 126783 131612 1 - . ID=CGI_10021378; scaffold43122 WUBlastX LINE_RTE-X 75356 75402 172 + . . scaffold43122 GLEAN mRNA 75079 75402 0.99566 + . ID=CGI_10008936; scaffold172 WUBlastX LTR_Ngaro 279067 279492 204 - . . scaffold172 GLEAN mRNA 274118 285723 0.998306 - . ID=CGI_10013528; scaffold678 WUBlastX LTR_Copia 135761 136234 233 + . . scaffold678 GLEAN mRNA 131890 142320 0.499963 + . ID=CGI_10026336; scaffold1403 WUBlastX LTR_DIRS 612223 612819 233 - . . scaffold1403 GLEAN mRNA 612208 612819 0.999999 - . ID=CGI_10020188; scaffold583 WUBlastX LTR_DIRS 279966 280883 233 + . . scaffold583 GLEAN mRNA 279966 280898 0.998382 + . ID=CGI_10023617; scaffold128 WUBlastX DNA_IS4EU 57415 58302 203 + . . scaffold128 GLEAN mRNA 54342 63516 0.993133 - . ID=CGI_10021504; scaffold365 WUBlastX DNA_Kolobok 293828 294016 25 + . . scaffold365 GLEAN mRNA 290837 296028 1 + . ID=CGI_10022726; scaffold1578 WUBlastX LTR_Ngaro 56008 56547 183 - . . scaffold1578 GLEAN mRNA 44226 72498 0.998909 - . ID=CGI_10008160; scaffold1825 WUBlastX LTR_Gypsy 62123 63082 237 - . . scaffold1825 GLEAN mRNA 52552 63242 0.967566 - . ID=CGI_10011138; scaffold1599 WUBlastX LTR_Gypsy 239974 240513 172 - . . scaffold1599 GLEAN mRNA 238916 249872 0.993706 - . ID=CGI_10027143; scaffold39196 WUBlastX RC_Helitron 38815 39003 69 - . . scaffold39196 GLEAN mRNA 18014 59804 0.5589 - . ID=CGI_10003215; scaffold754 WUBlastX LINE_L2 46790 47005 220 + . . scaffold754 GLEAN mRNA 34463 47005 0.401358 + . ID=CGI_10014062; scaffold1281 WUBlastX LTR_DIRS 12296 12592 203 - . . scaffold1281 GLEAN mRNA 6818 22494 0.72874 + . ID=CGI_10001420; scaffold1630 WUBlastX DNA_hAT 209316 209945 77 - . . scaffold1630 GLEAN mRNA 208694 211851 1 - . ID=CGI_10013425; scaffold1104 WUBlastX DNA_Kolobok-IS4 527309 528067 309 + . . scaffold1104 GLEAN mRNA 524853 533185 0.523865 + . ID=CGI_10020392; scaffold1104 WUBlastX DNA_Kolobok-IS4 527309 528067 309 + . . scaffold1104 GLEAN mRNA 502059 528268 0.99448 - . ID=CGI_10020391; scaffold40836 WUBlastX LINE_RTE-X 87304 87486 135 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold1831 WUBlastX LINE_RTE-X 25511 25729 23 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold870 WUBlastX DNA_hAT 49117 49275 38 + . . scaffold870 GLEAN mRNA 44819 52818 0.999949 + . ID=CGI_10007493; scaffold1155 WUBlastX LTR_Gypsy 183540 183689 26 + . . scaffold1155 GLEAN mRNA 180232 184015 0.838121 + . ID=CGI_10007798; scaffold1174 WUBlastX DNA_TcMar-Fot1 1088994 1089671 322 + . . scaffold1174 GLEAN mRNA 1080209 1093364 0.548358 + . ID=CGI_10026081; scaffold70 WUBlastX DNA_TcMar-m44 120005 120889 559 + . . scaffold70 GLEAN mRNA 110646 126975 0.99511 - . ID=CGI_10024754; scaffold1094 WUBlastX LINE_L1-Tx1 629778 631334 444 + . . scaffold1094 GLEAN mRNA 609558 640373 0.531771 - . ID=CGI_10021838; scaffold1750 WUBlastX LTR_Pao 633604 633843 27 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold34 WUBlastX DNA_IS4EU 290723 291523 400 - . . scaffold34 GLEAN mRNA 290500 292814 0.678889 - . ID=CGI_10015943; scaffold35994 WUBlastX LINE_Penelope 11220 11702 144 + . . scaffold35994 GLEAN mRNA 1476 13595 0.650997 + . ID=CGI_10001674; scaffold1800 WUBlastX LTR_Gypsy-Cigr 6034 6642 384 + . . scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; scaffold1800 WUBlastX LTR_Gypsy-Cigr 7151 7621 113 + . . scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; scaffold1800 WUBlastX LTR_Gypsy-Cigr 8065 8253 120 + . . scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; scaffold1800 WUBlastX LTR_Gypsy-Cigr 8232 8408 81 + . . scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; scaffold1800 WUBlastX LTR_Gypsy-Cigr 8402 8575 70 + . . scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; scaffold39900 WUBlastX DNA_Maverick 65392 65436 33 + . . scaffold39900 GLEAN mRNA 63800 72994 0.885101 + . ID=CGI_10003685; scaffold1480 WUBlastX LINE_R2 160240 160434 27 - . . scaffold1480 GLEAN mRNA 145751 160551 0.693127 - . ID=CGI_10008638; scaffold980 WUBlastX DNA_Academ 241999 242148 91 - . . scaffold980 GLEAN mRNA 241945 242148 0.518358 - . ID=CGI_10019216; scaffold980 WUBlastX DNA_Academ 242201 242241 91 - . . scaffold980 GLEAN mRNA 242201 242902 0.579788 - . ID=CGI_10019217; scaffold1879 WUBlastX LINE_CR1-L2 120136 120504 183 - . . scaffold1879 GLEAN mRNA 117371 122368 1 - . ID=CGI_10007960; scaffold43500 WUBlastX LINE_RTE-X 69748 70518 431 - . . scaffold43500 GLEAN mRNA 67492 74179 0.830032 - . ID=CGI_10010614; scaffold43500 WUBlastX LINE_RTE-X 70524 70721 127 - . . scaffold43500 GLEAN mRNA 67492 74179 0.830032 - . ID=CGI_10010614; scaffold43500 WUBlastX LINE_RTE-X 70729 71244 361 - . . scaffold43500 GLEAN mRNA 67492 74179 0.830032 - . ID=CGI_10010614; scaffold1286 WUBlastX LINE_CR1 4189 4302 27 - . . scaffold1286 GLEAN mRNA 2541 6494 0.999936 - . ID=CGI_10009504; scaffold1525 WUBlastX LINE_L2 39140 39208 21 + . . scaffold1525 GLEAN mRNA 22768 58796 0.21079 + . ID=CGI_10013853; scaffold481 WUBlastX DNA_hAT-Tip100 1053921 1054268 45 + . . scaffold481 GLEAN mRNA 1047969 1057631 0.5 - . ID=CGI_10027259; scaffold43072 WUBlastX LTR_Gypsy 180079 180162 20 - . . scaffold43072 GLEAN mRNA 175017 183309 0.714416 - . ID=CGI_10008704; scaffold43072 WUBlastX LTR_Gypsy 180079 180162 20 - . . scaffold43072 GLEAN mRNA 178139 190258 0.999307 + . ID=CGI_10008705; scaffold829 WUBlastX LINE_L1 82431 82748 52 - . . scaffold829 GLEAN mRNA 82186 82748 0.9999 - . ID=CGI_10021139; scaffold321 WUBlastX LINE_L1 171525 171881 42 - . . scaffold321 GLEAN mRNA 170991 171881 0.996199 - . ID=CGI_10020800; scaffold794 WUBlastX LINE_Penelope 75112 75468 55 + . . scaffold794 GLEAN mRNA 66441 78697 0.999826 + . ID=CGI_10017136; scaffold1385 WUBlastX LINE_RTE-X 24682 24831 40 + . . scaffold1385 GLEAN mRNA 22815 31330 0.957817 - . ID=CGI_10013834; scaffold1009 WUBlastX LINE_RTE-X 756739 756933 46 - . . scaffold1009 GLEAN mRNA 749055 758501 1 - . ID=CGI_10028758; scaffold354 WUBlastX LINE_RTE-X 73256 73615 26 + . . scaffold354 GLEAN mRNA 46016 92159 0.140194 - . ID=CGI_10025696; scaffold604 WUBlastX LINE_RTE-X 45084 45341 43 - . . scaffold604 GLEAN mRNA 42759 53290 0.454666 + . ID=CGI_10005591; scaffold42402 WUBlastX LINE_RTE-X 130059 130262 68 + . . scaffold42402 GLEAN mRNA 124224 132825 0.999027 - . ID=CGI_10006795; scaffold42402 WUBlastX LINE_RTE-X 130059 130262 68 + . . scaffold42402 GLEAN mRNA 127799 151962 1 + . ID=CGI_10006796; scaffold1101 WUBlastX DNA_IS4EU 539772 540164 88 + . . scaffold1101 GLEAN mRNA 537182 541543 0.997138 + . ID=CGI_10023032; scaffold115 WUBlastX DNA_TcMar-Marin 624054 624170 36 + . . scaffold115 GLEAN mRNA 617761 631483 0.999676 + . ID=CGI_10021409; scaffold1097 WUBlastX LTR_Ngaro 586109 586276 21 + . . scaffold1097 GLEAN mRNA 566282 590466 0.579339 - . ID=CGI_10024535; scaffold934 WUBlastX LINE_L1-Tx1 245509 245913 33 + . . scaffold934 GLEAN mRNA 244426 254135 0.975523 + . ID=CGI_10015445; scaffold733 WUBlastX LINE_CR1 913418 913573 23 - . . scaffold733 GLEAN mRNA 898136 929166 0.513726 - . ID=CGI_10025894; scaffold681 WUBlastX LINE_CR1-L2 34994 35437 45 + . . scaffold681 GLEAN mRNA 27385 42751 0.999855 + . ID=CGI_10014717; scaffold3 WUBlastX LINE_L1 806169 806294 46 + . . scaffold3 GLEAN mRNA 805376 811617 0.747251 + . ID=CGI_10027304; scaffold313 WUBlastX LTR_Gypsy 154579 154962 82 - . . scaffold313 GLEAN mRNA 152241 158129 0.999929 - . ID=CGI_10026586; scaffold1244 WUBlastX DNA_IS4EU 605998 606171 65 + . . scaffold1244 GLEAN mRNA 508938 634898 0.0392589 - . ID=CGI_10020838; scaffold1362 WUBlastX DNA_IS4EU 572375 572548 65 - . . scaffold1362 GLEAN mRNA 572276 574419 0.938876 - . ID=CGI_10023946; scaffold1097 WUBlastX LTR_Ngaro 575649 575729 45 + . . scaffold1097 GLEAN mRNA 566282 590466 0.579339 - . ID=CGI_10024535; C35282 WUBlastX LTR_Gypsy 2030 2407 121 + . . C35282 GLEAN mRNA 1142 2704 0.999228 + . ID=CGI_10001456; scaffold458 WUBlastX LTR_Ngaro 175954 176097 92 + . . scaffold458 GLEAN mRNA 171659 179488 0.10231 + . ID=CGI_10013591; scaffold33980 WUBlastX LTR_Ngaro 9421 9690 108 - . . scaffold33980 GLEAN mRNA 2151 15835 0.664854 + . ID=CGI_10001168; scaffold404 WUBlastX LTR_DIRS 320698 320841 54 + . . scaffold404 GLEAN mRNA 311425 335048 0.297334 - . ID=CGI_10013607; scaffold1753 WUBlastX RC_Helitron 43799 44341 66 + . . scaffold1753 GLEAN mRNA 42409 50828 0.996749 + . ID=CGI_10010802; scaffold1009 WUBlastX LTR_Pao 1212325 1213359 106 - . . scaffold1009 GLEAN mRNA 1197147 1238817 0.350484 + . ID=CGI_10028788; scaffold925 WUBlastX LINE_CR1 234954 235418 117 - . . scaffold925 GLEAN mRNA 232303 237491 1 + . ID=CGI_10017421; scaffold57 WUBlastX LINE_RTE-X 205860 206249 128 - . . scaffold57 GLEAN mRNA 175786 215064 0.533671 + . ID=CGI_10020545; scaffold660 WUBlastX LINE_L1-Tx1 98868 99278 108 - . . scaffold660 GLEAN mRNA 98549 108257 0.999675 - . ID=CGI_10013750; scaffold43526 WUBlastX LINE_L1-Tx1 42864 43361 67 + . . scaffold43526 GLEAN mRNA 36766 62971 0.985699 + . ID=CGI_10010784; scaffold1214 WUBlastX LTR_Ngaro 251394 251768 134 - . . scaffold1214 GLEAN mRNA 241265 253884 0.274712 + . ID=CGI_10015480; scaffold1157 WUBlastX LINE_L2 228771 228902 39 - . . scaffold1157 GLEAN mRNA 212503 240416 0.462871 - . ID=CGI_10011221; scaffold479 WUBlastX LTR_Ngaro 424762 425037 94 + . . scaffold479 GLEAN mRNA 420249 425742 0.99319 + . ID=CGI_10015702; scaffold77 WUBlastX LINE_L1-Tx1 1120544 1120975 90 - . . scaffold77 GLEAN mRNA 1111468 1123998 0.545449 + . ID=CGI_10028021; scaffold40614 WUBlastX LINE_L2 60948 61787 370 - . . scaffold40614 GLEAN mRNA 56089 69167 0.972217 + . ID=CGI_10004259; scaffold40614 WUBlastX LINE_L2 61802 62284 265 - . . scaffold40614 GLEAN mRNA 56089 69167 0.972217 + . ID=CGI_10004259; scaffold40614 WUBlastX LINE_L2 62290 62598 256 - . . scaffold40614 GLEAN mRNA 56089 69167 0.972217 + . ID=CGI_10004259; scaffold40614 WUBlastX LINE_L2 62673 63365 265 - . . scaffold40614 GLEAN mRNA 56089 69167 0.972217 + . ID=CGI_10004259; scaffold313 WUBlastX DNA_En-Spm 614356 614649 47 - . . scaffold313 GLEAN mRNA 612366 622273 0.647784 - . ID=CGI_10026614; scaffold1703 WUBlastX LINE_L1-Tx1 467592 470261 878 + . . scaffold1703 GLEAN mRNA 460683 476446 0.999324 - . ID=CGI_10023062; scaffold1599 WUBlastX LTR_Gypsy 214866 215900 160 + . . scaffold1599 GLEAN mRNA 204689 219809 0.999676 - . ID=CGI_10027141; scaffold550 WUBlastX DNA_Harbinger 56456 56617 98 - . . scaffold550 GLEAN mRNA 42295 70110 0.723644 + . ID=CGI_10012483; scaffold57 WUBlastX LINE_RTE-X 209555 210142 166 - . . scaffold57 GLEAN mRNA 175786 215064 0.533671 + . ID=CGI_10020545; C31096 WUBlastX LTR_Ngaro 6578 6700 156 - . . C31096 GLEAN mRNA 4535 6700 0.999978 - . ID=CGI_10000705; scaffold301 WUBlastX DNA_Sola 946686 947285 229 - . . scaffold301 GLEAN mRNA 935860 957762 0.976661 - . ID=CGI_10026737; scaffold1179 WUBlastX LTR_Gypsy 23499 23657 29 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold1347 WUBlastX DNA_IS4EU 25542 25673 50 + . . scaffold1347 GLEAN mRNA 21277 29429 0.935835 - . ID=CGI_10012972; scaffold34942 WUBlastX DNA_Kolobok 11334 11483 96 - . . scaffold34942 GLEAN mRNA 4327 15160 0.738571 - . ID=CGI_10001379; scaffold34942 WUBlastX DNA_Kolobok 11627 11788 73 - . . scaffold34942 GLEAN mRNA 4327 15160 0.738571 - . ID=CGI_10001379; scaffold34942 WUBlastX DNA_Kolobok 11895 12086 64 - . . scaffold34942 GLEAN mRNA 4327 15160 0.738571 - . ID=CGI_10001379; scaffold107 WUBlastX LINE_RTE-X 458823 459815 148 - . . scaffold107 GLEAN mRNA 449056 473669 0.986168 - . ID=CGI_10025055; scaffold1021 WUBlastX LTR_DIRS 102932 103225 49 + . . scaffold1021 GLEAN mRNA 100590 130334 0.994213 + . ID=CGI_10022484; scaffold39972 WUBlastX LTR_Gypsy 52459 52974 188 - . . scaffold39972 GLEAN mRNA 49348 55126 0.885383 + . ID=CGI_10003709; scaffold39972 WUBlastX LTR_Gypsy 53067 53375 39 - . . scaffold39972 GLEAN mRNA 49348 55126 0.885383 + . ID=CGI_10003709; scaffold1705 WUBlastX LTR_Gypsy 96747 96947 72 + . . scaffold1705 GLEAN mRNA 68885 100114 0.343232 + . ID=CGI_10007468; scaffold783 WUBlastX LTR_Pao 274460 274663 24 - . . scaffold783 GLEAN mRNA 271175 288350 0.999949 + . ID=CGI_10011687; scaffold1031 WUBlastX DNA_TcMar-Tc1 592185 592346 69 - . . scaffold1031 GLEAN mRNA 571823 599273 0.583554 - . ID=CGI_10019718; scaffold143 WUBlastX LINE_L1 181851 181916 21 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold1382 WUBlastX DNA_Harbinger 217967 218074 21 + . . scaffold1382 GLEAN mRNA 212938 228080 0.974072 - . ID=CGI_10011177; scaffold1382 WUBlastX DNA_Harbinger 219353 219634 220 + . . scaffold1382 GLEAN mRNA 218944 220078 0.999189 + . ID=CGI_10011178; scaffold1382 WUBlastX DNA_Harbinger 219353 219634 220 + . . scaffold1382 GLEAN mRNA 212938 228080 0.974072 - . ID=CGI_10011177; scaffold38464 WUBlastX LTR_Ngaro 29526 30398 454 - . . scaffold38464 GLEAN mRNA 29156 32869 1 - . ID=CGI_10002793; scaffold54 WUBlastX LTR_Gypsy 79644 79787 20 + . . scaffold54 GLEAN mRNA 79485 84388 0.939929 + . ID=CGI_10023654; scaffold42486 WUBlastX DNA_TcMar-Tc1 148336 148434 29 + . . scaffold42486 GLEAN mRNA 141403 154918 0.998251 - . ID=CGI_10006982; scaffold1714 WUBlastX DNA_IS4EU 216279 217025 478 - . . scaffold1714 GLEAN mRNA 216267 217025 1 - . ID=CGI_10013674; scaffold1703 WUBlastX DNA_Maverick 220849 221073 86 - . . scaffold1703 GLEAN mRNA 215396 234951 0.309503 + . ID=CGI_10023049; scaffold1009 WUBlastX DNA_hAT-Tip100 423232 423387 104 + . . scaffold1009 GLEAN mRNA 414066 425148 0.992384 - . ID=CGI_10028732; scaffold1009 WUBlastX DNA_hAT-Tip100 423519 423953 261 + . . scaffold1009 GLEAN mRNA 414066 425148 0.992384 - . ID=CGI_10028732; scaffold1009 WUBlastX DNA_hAT-Tip100 423956 424078 38 + . . scaffold1009 GLEAN mRNA 414066 425148 0.992384 - . ID=CGI_10028732; scaffold1009 WUBlastX DNA_hAT-Tip100 424075 424593 193 + . . scaffold1009 GLEAN mRNA 414066 425148 0.992384 - . ID=CGI_10028732; scaffold1333 WUBlastX LTR_Ngaro 55235 56761 551 - . . scaffold1333 GLEAN mRNA 51293 57849 0.723221 - . ID=CGI_10009674; scaffold549 WUBlastX LINE_RTE-BovB 59078 59395 369 + . . scaffold549 GLEAN mRNA 50843 62768 0.999759 - . ID=CGI_10004104; scaffold549 WUBlastX LINE_RTE-BovB 59078 59395 369 + . . scaffold549 GLEAN mRNA 31331 63327 0.976872 + . ID=CGI_10004103; scaffold549 WUBlastX LINE_RTE-BovB 59660 59884 131 + . . scaffold549 GLEAN mRNA 50843 62768 0.999759 - . ID=CGI_10004104; scaffold549 WUBlastX LINE_RTE-BovB 59660 59884 131 + . . scaffold549 GLEAN mRNA 31331 63327 0.976872 + . ID=CGI_10004103; scaffold181 WUBlastX LINE_CR1-L2 26565 26720 54 + . . scaffold181 GLEAN mRNA 23184 28128 0.999547 + . ID=CGI_10003023; scaffold536 WUBlastX LINE_L2 88669 88875 70 + . . scaffold536 GLEAN mRNA 68482 93233 0.999348 + . ID=CGI_10006670; scaffold569 WUBlastX LINE_CR1 33436 33651 76 + . . scaffold569 GLEAN mRNA 32554 62247 0.974978 + . ID=CGI_10009494; scaffold37880 WUBlastX LTR_Copia 36836 36934 46 + . . scaffold37880 GLEAN mRNA 36587 37120 0.99998 + . ID=CGI_10002539; scaffold37880 WUBlastX LTR_Copia 36836 36934 46 + . . scaffold37880 GLEAN mRNA 32540 47810 0.54365 - . ID=CGI_10002538; scaffold854 WUBlastX LINE_Jockey 197153 197233 36 - . . scaffold854 GLEAN mRNA 197153 198070 0.635503 - . ID=CGI_10022241; scaffold1730 WUBlastX DNA_IS4EU 129176 129301 36 - . . scaffold1730 GLEAN mRNA 128597 135866 0.888729 - . ID=CGI_10012255; scaffold1359 WUBlastX DNA_IS4EU 231114 231436 27 + . . scaffold1359 GLEAN mRNA 231045 231436 1 - . ID=CGI_10013244; scaffold1726 WUBlastX LTR_Gypsy 348171 348341 35 - . . scaffold1726 GLEAN mRNA 346832 358042 0.529003 - . ID=CGI_10015641; scaffold39014 WUBlastX DNA_Harbinger 61790 61972 24 + . . scaffold39014 GLEAN mRNA 61763 62871 0.6936 + . ID=CGI_10003136; scaffold1037 WUBlastX LINE_L1 212287 212559 31 + . . scaffold1037 GLEAN mRNA 210599 214513 0.72876 + . ID=CGI_10017456; scaffold33922 WUBlastX LINE_L2 6312 7148 29 - . . scaffold33922 GLEAN mRNA 5793 7574 0.69447 - . ID=CGI_10001167; scaffold41228 WUBlastX LINE_L2 15885 16544 76 + . . scaffold41228 GLEAN mRNA 12628 43602 0.144447 - . ID=CGI_10004861; scaffold113 WUBlastX LINE_RTE-X 172993 173358 35 - . . scaffold113 GLEAN mRNA 167918 175905 0.777732 + . ID=CGI_10021288; scaffold43842 WUBlastX LINE_RTE-X 195593 195811 31 + . . scaffold43842 GLEAN mRNA 186219 196229 0.99996 + . ID=CGI_10013104; scaffold160 WUBlastX LINE_RTE-X 342532 342738 66 + . . scaffold160 GLEAN mRNA 341764 344858 1 + . ID=CGI_10020592; scaffold493 WUBlastX LINE_RTE-X 36214 36360 48 + . . scaffold493 GLEAN mRNA 33582 40988 0.999595 + . ID=CGI_10007246; scaffold1838 WUBlastX LINE_Proto2 364181 364489 55 + . . scaffold1838 GLEAN mRNA 361613 368125 0.631432 + . ID=CGI_10014266; scaffold612 WUBlastX LINE_RTE-X 151283 151408 43 - . . scaffold612 GLEAN mRNA 144081 154534 1 + . ID=CGI_10009467; scaffold563 WUBlastX LINE_RTE-X 48535 48783 41 - . . scaffold563 GLEAN mRNA 32054 55715 0.362367 - . ID=CGI_10019817; scaffold563 WUBlastX LINE_RTE-X 48922 48978 25 - . . scaffold563 GLEAN mRNA 32054 55715 0.362367 - . ID=CGI_10019817; scaffold404 WUBlastX LTR_DIRS 320331 320609 36 + . . scaffold404 GLEAN mRNA 311425 335048 0.297334 - . ID=CGI_10013607; scaffold601 WUBlastX LTR_Ngaro 581346 581714 23 + . . scaffold601 GLEAN mRNA 573889 582293 1 - . ID=CGI_10026837; scaffold630 WUBlastX LTR_Gypsy 375671 375925 74 - . . scaffold630 GLEAN mRNA 373403 389900 0.98161 - . ID=CGI_10018333; scaffold852 WUBlastX DNA_IS4EU 126817 127212 90 + . . scaffold852 GLEAN mRNA 121104 128274 1 + . ID=CGI_10012039; scaffold1024 WUBlastX DNA_Kolobok 293810 294013 62 - . . scaffold1024 GLEAN mRNA 286016 307543 0.666664 - . ID=CGI_10028532; scaffold88 WUBlastX DNA_hAT-Tip100 7832 7924 30 + . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold37880 WUBlastX DNA_TcMar-ISRm1 13325 13768 94 + . . scaffold37880 GLEAN mRNA 2966 17075 0.52423 - . ID=CGI_10002532; scaffold1307 WUBlastX LINE_RTE-X 18087 18407 49 - . . scaffold1307 GLEAN mRNA 6251 45653 0.745308 + . ID=CGI_10023739; scaffold1244 WUBlastX LINE_L1 99417 99566 21 + . . scaffold1244 GLEAN mRNA 89223 101617 0.299139 + . ID=CGI_10020820; scaffold459 WUBlastX DNA_TcMar-Marin 131821 132150 52 - . . scaffold459 GLEAN mRNA 130507 139915 0.650578 - . ID=CGI_10018170; scaffold1188 WUBlastX LINE_L1 791254 791499 90 - . . scaffold1188 GLEAN mRNA 787973 796993 0.991964 + . ID=CGI_10025502; scaffold790 WUBlastX LINE_L1 222214 222879 85 - . . scaffold790 GLEAN mRNA 221752 222957 0.977562 - . ID=CGI_10013171; scaffold43242 WUBlastX DNA_TcMar-Tc1 28123 28272 31 + . . scaffold43242 GLEAN mRNA 27154 33595 0.878599 + . ID=CGI_10009544; scaffold1893 WUBlastX DNA_Kolobok-IS4 203068 203232 36 - . . scaffold1893 GLEAN mRNA 199713 203993 0.999824 + . ID=CGI_10008861; scaffold433 WUBlastX DNA_PiggyBac 1263149 1263631 105 - . . scaffold433 GLEAN mRNA 1258038 1264095 0.626587 - . ID=CGI_10027122; scaffold686 WUBlastX LINE_L1-Tx1 15977 16336 39 - . . scaffold686 GLEAN mRNA 9292 17710 0.993892 - . ID=CGI_10004461; scaffold789 WUBlastX LTR_Gypsy 322510 322749 46 + . . scaffold789 GLEAN mRNA 321917 326732 0.597754 + . ID=CGI_10017201; scaffold392 WUBlastX LTR_Gypsy-Cigr 37921 38124 83 - . . scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; scaffold1244 WUBlastX LINE_Penelope 570681 570914 30 - . . scaffold1244 GLEAN mRNA 508938 634898 0.0392589 - . ID=CGI_10020838; scaffold337 WUBlastX LTR_Gypsy 489977 490360 115 - . . scaffold337 GLEAN mRNA 483649 507534 0.56595 + . ID=CGI_10028067; scaffold398 WUBlastX LINE_L2 4764 4853 27 - . . scaffold398 GLEAN mRNA 896 15325 0.911211 + . ID=CGI_10004360; scaffold419 WUBlastX LINE_Jockey 48228 48491 96 - . . scaffold419 GLEAN mRNA 46988 49900 0.999992 + . ID=CGI_10028319; scaffold925 WUBlastX LTR_DIRS 438927 439280 21 + . . scaffold925 GLEAN mRNA 430454 444048 0.986598 + . ID=CGI_10017428; scaffold184 WUBlastX DNA_Merlin 249263 249838 99 + . . scaffold184 GLEAN mRNA 248871 256134 0.689082 + . ID=CGI_10014799; scaffold459 WUBlastX DNA_TcMar-Marin 131821 132090 74 - . . scaffold459 GLEAN mRNA 130507 139915 0.650578 - . ID=CGI_10018170; scaffold459 WUBlastX DNA_TcMar-Marin 132424 132555 29 - . . scaffold459 GLEAN mRNA 130507 139915 0.650578 - . ID=CGI_10018170; scaffold621 WUBlastX LTR_DIRS 154047 154069 907 - . . scaffold621 GLEAN mRNA 154047 155567 0.573337 - . ID=CGI_10017674; scaffold621 WUBlastX LTR_DIRS 152324 154069 907 - . . scaffold621 GLEAN mRNA 127381 238205 0.796035 + . ID=CGI_10017672; scaffold1831 WUBlastX LINE_I 26447 26725 103 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1788 WUBlastX LINE_CR1-L2 18907 19641 214 + . . scaffold1788 GLEAN mRNA 1232 23874 0.618655 + . ID=CGI_10019910; scaffold1879 WUBlastX LINE_CR1-L2 120506 121999 737 - . . scaffold1879 GLEAN mRNA 117371 122368 1 - . ID=CGI_10007960; scaffold165 WUBlastX LTR_Pao 199350 199451 36 - . . scaffold165 GLEAN mRNA 195130 200984 1 + . ID=CGI_10015323; scaffold40928 WUBlastX LINE_CR1 40963 41166 124 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold1459 WUBlastX LINE_L1-Tx1 10248 10445 63 + . . scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; scaffold86 WUBlastX DNA_Kolobok 152739 153188 38 - . . scaffold86 GLEAN mRNA 141744 153852 0.999675 - . ID=CGI_10028139; scaffold117 WUBlastX DNA_Kolobok 247390 247662 81 - . . scaffold117 GLEAN mRNA 233426 248341 0.648025 + . ID=CGI_10016961; scaffold43576 WUBlastX DNA_TcMar-Pogo 216131 216418 203 + . . scaffold43576 GLEAN mRNA 197837 232524 1 - . ID=CGI_10011134; scaffold790 WUBlastX LINE_CR1-L2 240836 241060 197 - . . scaffold790 GLEAN mRNA 239122 257283 0.83657 + . ID=CGI_10013172; scaffold35336 WUBlastX DNA_IS4EU 8734 9048 152 - . . scaffold35336 GLEAN mRNA 20 10310 0.999999 - . ID=CGI_10001479; scaffold102 WUBlastX LINE_RTE-BovB 1279108 1279260 115 + . . scaffold102 GLEAN mRNA 1269983 1282871 0.999387 - . ID=CGI_10028488; scaffold102 WUBlastX LINE_RTE-BovB 1279275 1279418 45 + . . scaffold102 GLEAN mRNA 1269983 1282871 0.999387 - . ID=CGI_10028488; scaffold101 WUBlastX DNA_MuDR 677993 678166 21 + . . scaffold101 GLEAN mRNA 676539 710927 0.888019 - . ID=CGI_10021653; scaffold42890 WUBlastX LTR_Gypsy 81943 82377 367 - . . scaffold42890 GLEAN mRNA 76174 91402 0.99612 + . ID=CGI_10008039; scaffold226 WUBlastX LTR_DIRS 462526 462972 120 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold1427 WUBlastX DNA_Harbinger 105351 105629 87 - . . scaffold1427 GLEAN mRNA 100689 106671 0.382647 + . ID=CGI_10005232; scaffold1873 WUBlastX RC_Helitron 54964 55191 59 - . . scaffold1873 GLEAN mRNA 42995 66497 0.656652 + . ID=CGI_10009291; scaffold1873 WUBlastX RC_Helitron 55187 56488 785 - . . scaffold1873 GLEAN mRNA 42995 66497 0.656652 + . ID=CGI_10009291; scaffold1873 WUBlastX RC_Helitron 56649 57350 276 - . . scaffold1873 GLEAN mRNA 42995 66497 0.656652 + . ID=CGI_10009291; scaffold1873 WUBlastX RC_Helitron 57353 58015 437 - . . scaffold1873 GLEAN mRNA 42995 66497 0.656652 + . ID=CGI_10009291; scaffold1873 WUBlastX RC_Helitron 57947 58579 312 - . . scaffold1873 GLEAN mRNA 42995 66497 0.656652 + . ID=CGI_10009291; scaffold1705 WUBlastX LTR_Gypsy 91481 94249 2036 - . . scaffold1705 GLEAN mRNA 68885 100114 0.343232 + . ID=CGI_10007468; scaffold37760 WUBlastX LTR_Gypsy 11848 15222 2065 + . . scaffold37760 GLEAN mRNA 11272 38265 0.979677 + . ID=CGI_10002466; scaffold504 WUBlastX LINE_RTE-X 236032 236535 220 - . . scaffold504 GLEAN mRNA 229448 243335 1 - . ID=CGI_10016027; scaffold1084 WUBlastX LTR_DIRS 176613 176870 169 + . . scaffold1084 GLEAN mRNA 168340 187154 0.999572 + . ID=CGI_10010079; scaffold1084 WUBlastX LTR_DIRS 177403 177519 30 + . . scaffold1084 GLEAN mRNA 168340 187154 0.999572 + . ID=CGI_10010079; scaffold1084 WUBlastX LTR_DIRS 177528 177719 100 + . . scaffold1084 GLEAN mRNA 168340 187154 0.999572 + . ID=CGI_10010079; scaffold37880 WUBlastX DNA_Harbinger 25813 26007 162 + . . scaffold37880 GLEAN mRNA 25813 26910 0.999833 + . ID=CGI_10002534; scaffold1532 WUBlastX LTR_Gypsy 393698 393784 27 + . . scaffold1532 GLEAN mRNA 391874 403369 0.462643 + . ID=CGI_10028249; scaffold36450 WUBlastX LTR_Ngaro 21836 22435 366 + . . scaffold36450 GLEAN mRNA 18407 33594 0.503687 - . ID=CGI_10001980; scaffold396 WUBlastX LTR_Ngaro 141886 142620 359 - . . scaffold396 GLEAN mRNA 135948 145670 0.499792 + . ID=CGI_10018099; scaffold40080 WUBlastX DNA_Harbinger 65541 66032 393 + . . scaffold40080 GLEAN mRNA 45524 71991 0.583639 - . ID=CGI_10003845; scaffold59 WUBlastX LTR_Ngaro 70640 71383 329 - . . scaffold59 GLEAN mRNA 68986 78873 0.61656 - . ID=CGI_10011272; scaffold41174 WUBlastX LINE_RTE-X 69000 69470 200 + . . scaffold41174 GLEAN mRNA 37943 88980 0.479824 - . ID=CGI_10004794; scaffold1018 WUBlastX DNA_En-Spm 439878 440483 96 + . . scaffold1018 GLEAN mRNA 435304 447286 0.992449 + . ID=CGI_10019772; scaffold1018 WUBlastX DNA_En-Spm 439878 440483 96 + . . scaffold1018 GLEAN mRNA 435432 442583 0.542495 - . ID=CGI_10019773; scaffold550 WUBlastX LTR_Gypsy 192469 193500 304 - . . scaffold550 GLEAN mRNA 192301 204322 0.634785 + . ID=CGI_10012493; scaffold1788 WUBlastX LINE_L2 17987 19150 308 + . . scaffold1788 GLEAN mRNA 1232 23874 0.618655 + . ID=CGI_10019910; scaffold1767 WUBlastX DNA_hAT 375745 377310 427 - . . scaffold1767 GLEAN mRNA 373639 384950 0.998695 - . ID=CGI_10016926; scaffold343 WUBlastX DNA_Helitron 614260 615435 442 - . . scaffold343 GLEAN mRNA 606783 616118 0.949663 + . ID=CGI_10021767; scaffold1423 WUBlastX DNA_hAT 196199 197140 328 - . . scaffold1423 GLEAN mRNA 194970 198353 1 - . ID=CGI_10025421; scaffold1423 WUBlastX DNA_hAT 198099 198314 45 - . . scaffold1423 GLEAN mRNA 194970 198353 1 - . ID=CGI_10025421; scaffold1772 WUBlastX LTR_DIRS 202265 202486 28 - . . scaffold1772 GLEAN mRNA 201858 204314 0.999554 - . ID=CGI_10014812; scaffold743 WUBlastX LINE_RTE-X 108840 108926 63 + . . scaffold743 GLEAN mRNA 83791 109134 0.449406 + . ID=CGI_10008614; scaffold534 WUBlastX LTR_Gypsy 70756 71541 309 - . . scaffold534 GLEAN mRNA 66095 75550 0.716363 + . ID=CGI_10005164; scaffold504 WUBlastX LINE_RTE-X 113379 114929 329 + . . scaffold504 GLEAN mRNA 112041 122139 0.999999 - . ID=CGI_10016018; scaffold43208 WUBlastX LINE_RTE-X 135228 136346 407 - . . scaffold43208 GLEAN mRNA 124106 156003 0.962351 + . ID=CGI_10009358; scaffold38026 WUBlastX LTR_Gypsy 25639 26418 320 + . . scaffold38026 GLEAN mRNA 24330 29871 1 - . ID=CGI_10002428; scaffold36728 WUBlastX LINE_RTE-X 3852 5267 685 - . . scaffold36728 GLEAN mRNA 432 7345 0.999672 - . ID=CGI_10002097; scaffold1221 WUBlastX LTR_Gypsy-Cigr 67805 68260 252 - . . scaffold1221 GLEAN mRNA 56411 69596 0.696179 + . ID=CGI_10019728; scaffold392 WUBlastX LINE_RTE-X 448312 448623 70 - . . scaffold392 GLEAN mRNA 426913 455766 0.44936 + . ID=CGI_10024218; scaffold773 WUBlastX LTR_Copia 10369 10575 55 - . . scaffold773 GLEAN mRNA 9303 18869 0.52374 - . ID=CGI_10011341; scaffold42528 WUBlastX LTR_ERV1 144407 144577 26 + . . scaffold42528 GLEAN mRNA 136401 146936 0.889923 + . ID=CGI_10007210; scaffold583 WUBlastX LINE_CR1-L2 388197 388331 32 - . . scaffold583 GLEAN mRNA 365612 390201 0.692695 - . ID=CGI_10023621; scaffold773 WUBlastX LTR_Gypsy 267303 267530 62 + . . scaffold773 GLEAN mRNA 235107 267865 0.138953 - . ID=CGI_10011348; scaffold1554 WUBlastX LINE_L2 486123 486188 68 + . . scaffold1554 GLEAN mRNA 475769 486188 0.34149 + . ID=CGI_10017375; scaffold971 WUBlastX LINE_L2 20060 20194 49 - . . scaffold971 GLEAN mRNA 16604 37431 0.450997 + . ID=CGI_10006831; scaffold1036 WUBlastX LTR_Gypsy 598964 599152 73 + . . scaffold1036 GLEAN mRNA 594409 600469 0.995654 - . ID=CGI_10019975; scaffold1564 WUBlastX DNA_hAT-Ac 107714 107854 55 - . . scaffold1564 GLEAN mRNA 80148 112523 0.650997 - . ID=CGI_10005199; scaffold392 WUBlastX LTR_Gypsy 38338 38574 24 - . . scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; scaffold1080 WUBlastX DNA_En-Spm 264207 264248 28 - . . scaffold1080 GLEAN mRNA 255570 275608 0.591325 - . ID=CGI_10012678; scaffold1671 WUBlastX DNA_Sola 384091 384177 22 - . . scaffold1671 GLEAN mRNA 384061 387810 0.999617 - . ID=CGI_10015157; scaffold1671 WUBlastX DNA_Sola 384603 384824 60 - . . scaffold1671 GLEAN mRNA 384061 387810 0.999617 - . ID=CGI_10015157; scaffold1558 WUBlastX LINE_L1-Tx1 61596 61784 71 + . . scaffold1558 GLEAN mRNA 34398 73907 0.517269 - . ID=CGI_10004094; scaffold117 WUBlastX DNA_TcMar-Tc2 279237 279407 65 - . . scaffold117 GLEAN mRNA 279062 289645 0.406248 - . ID=CGI_10016963; scaffold252 WUBlastX DNA_MuDR 93225 93524 56 - . . scaffold252 GLEAN mRNA 89598 102247 0.999676 + . ID=CGI_10010762; scaffold775 WUBlastX DNA_Kolobok-Hyd 115961 116176 44 - . . scaffold775 GLEAN mRNA 115517 116176 0.999137 - . ID=CGI_10006091; scaffold535 WUBlastX DNA_IS4EU 3215 3352 20 + . . scaffold535 GLEAN mRNA 109 7288 0.491277 + . ID=CGI_10020280; scaffold535 WUBlastX DNA_IS4EU 4002 4181 50 + . . scaffold535 GLEAN mRNA 109 7288 0.491277 + . ID=CGI_10020280; scaffold1599 WUBlastX LINE_L2 680142 680354 69 + . . scaffold1599 GLEAN mRNA 676136 688286 0.501311 - . ID=CGI_10027155; scaffold1769 WUBlastX DNA_Crypton 196580 196780 97 + . . scaffold1769 GLEAN mRNA 194019 207786 0.990769 + . ID=CGI_10009243; scaffold316 WUBlastX LTR_Gypsy 16781 17083 60 + . . scaffold316 GLEAN mRNA 23 25141 0.301379 - . ID=CGI_10001602; scaffold664 WUBlastX DNA_TcMar-Marin 656703 656783 24 - . . scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold1493 WUBlastX DNA_Harbinger 94283 94336 21 + . . scaffold1493 GLEAN mRNA 68626 94456 0.99155 + . ID=CGI_10006742; scaffold43660 WUBlastX LINE_Penelope 126824 127081 34 - . . scaffold43660 GLEAN mRNA 125748 138289 0.998274 + . ID=CGI_10011663; scaffold579 WUBlastX DNA_TcMar-Tc1 207241 207477 87 + . . scaffold579 GLEAN mRNA 193436 221323 0.863149 + . ID=CGI_10011264; scaffold42328 WUBlastX LINE_RTE-X 30699 30887 82 - . . scaffold42328 GLEAN mRNA 29569 31949 0.777732 + . ID=CGI_10006549; scaffold35004 WUBlastX LINE_RTE-X 20135 20323 82 - . . scaffold35004 GLEAN mRNA 18894 21385 1 + . ID=CGI_10001394; scaffold272 WUBlastX LINE_L2 45446 46153 58 + . . scaffold272 GLEAN mRNA 32744 62954 0.999882 + . ID=CGI_10003057; scaffold1024 WUBlastX DNA_PiggyBac 1076280 1076549 37 - . . scaffold1024 GLEAN mRNA 1070619 1077233 0.9551 - . ID=CGI_10028563; C33654 WUBlastX LINE_RTE-X 11840 12361 26 + . . C33654 GLEAN mRNA 2501 14319 0.999996 + . ID=CGI_10001111; scaffold1138 WUBlastX DNA_TcMar-Fot1 288922 289320 138 + . . scaffold1138 GLEAN mRNA 273468 292780 0.221988 + . ID=CGI_10015375; C31130 WUBlastX LINE_RTE-BovB 5984 6106 51 + . . C31130 GLEAN mRNA 1615 7443 0.999998 - . ID=CGI_10000707; scaffold586 WUBlastX LINE_RTE-X 177993 178244 49 - . . scaffold586 GLEAN mRNA 158543 182219 0.249413 - . ID=CGI_10018000; scaffold586 WUBlastX LINE_RTE-X 178244 178459 37 - . . scaffold586 GLEAN mRNA 158543 182219 0.249413 - . ID=CGI_10018000; scaffold172 WUBlastX DNA_Crypton 10030 10104 26 + . . scaffold172 GLEAN mRNA 5002 17897 0.999274 - . ID=CGI_10013508; scaffold172 WUBlastX DNA_Crypton 10188 10463 59 + . . scaffold172 GLEAN mRNA 5002 17897 0.999274 - . ID=CGI_10013508; scaffold37532 WUBlastX LTR_Gypsy 41893 42111 21 + . . scaffold37532 GLEAN mRNA 24867 43092 0.82218 + . ID=CGI_10002401; scaffold128 WUBlastX LINE_RTE-X 122015 122290 43 + . . scaffold128 GLEAN mRNA 119795 124529 0.290216 - . ID=CGI_10021509; scaffold469 WUBlastX DNA_hAT 107063 107728 131 - . . scaffold469 GLEAN mRNA 102901 107728 1 - . ID=CGI_10024668; scaffold453 WUBlastX LINE_L2 314406 314564 24 - . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold453 WUBlastX LINE_L2 314666 315157 55 - . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold43150 WUBlastX LINE_CR1 107545 107688 29 + . . scaffold43150 GLEAN mRNA 101388 111532 0.998791 - . ID=CGI_10009032; scaffold591 WUBlastX DNA_PiggyBac 726146 726244 45 + . . scaffold591 GLEAN mRNA 721166 806574 0.987378 - . ID=CGI_10027581; scaffold578 WUBlastX LINE_RTE-X 356348 356506 49 + . . scaffold578 GLEAN mRNA 348664 361929 0.458006 + . ID=CGI_10015130; scaffold806 WUBlastX LTR_DIRS 14221 14901 86 + . . scaffold806 GLEAN mRNA 6658 18169 0.934338 + . ID=CGI_10004919; scaffold34302 WUBlastX DNA_IS4EU 12411 12845 36 + . . scaffold34302 GLEAN mRNA 961 13534 0.696945 + . ID=CGI_10001259; scaffold695 WUBlastX LINE_L1-Tx1 93706 93870 83 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold257 WUBlastX LINE_L1 317511 317990 149 + . . scaffold257 GLEAN mRNA 306483 324339 0.999073 + . ID=CGI_10027906; scaffold43818 WUBlastX DNA_TcMar-Marin 276392 276973 139 + . . scaffold43818 GLEAN mRNA 259212 278747 0.997869 + . ID=CGI_10012774; scaffold1609 WUBlastX LTR_Gypsy 159184 161556 995 + . . scaffold1609 GLEAN mRNA 144417 163840 0.83514 - . ID=CGI_10010602; scaffold36936 WUBlastX DNA_Crypton 14821 15573 73 - . . scaffold36936 GLEAN mRNA 314 25498 0.932631 - . ID=CGI_10002182; scaffold504 WUBlastX LINE_RTE-X 235975 236343 106 - . . scaffold504 GLEAN mRNA 229448 243335 1 - . ID=CGI_10016027; scaffold1532 WUBlastX DNA_PiggyBac 609844 609966 87 - . . scaffold1532 GLEAN mRNA 606606 610636 0.502786 - . ID=CGI_10028261; scaffold39134 WUBlastX LTR_Gypsy 45356 45631 168 + . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold1882 WUBlastX LTR_DIRS 147813 148403 66 - . . scaffold1882 GLEAN mRNA 139430 150969 0.999129 + . ID=CGI_10010506; scaffold1532 WUBlastX DNA_Kolobok 586841 587047 84 - . . scaffold1532 GLEAN mRNA 577371 590809 0.942324 - . ID=CGI_10028257; scaffold1532 WUBlastX DNA_Kolobok 587670 587996 88 - . . scaffold1532 GLEAN mRNA 577371 590809 0.942324 - . ID=CGI_10028257; scaffold448 WUBlastX LTR_DIRS 27625 28212 22 - . . scaffold448 GLEAN mRNA 15813 30397 0.727338 + . ID=CGI_10024928; scaffold1554 WUBlastX LTR_Gypsy 6455 6607 23 - . . scaffold1554 GLEAN mRNA 977 22779 0.529783 + . ID=CGI_10017354; scaffold1097 WUBlastX LINE_RTE-BovB 712031 712192 114 + . . scaffold1097 GLEAN mRNA 684510 718767 0.99504 - . ID=CGI_10024542; scaffold165 WUBlastX LTR_Pao 197644 198198 126 - . . scaffold165 GLEAN mRNA 195130 200984 1 + . ID=CGI_10015323; scaffold550 WUBlastX LINE_L1 61197 61367 44 - . . scaffold550 GLEAN mRNA 42295 70110 0.723644 + . ID=CGI_10012483; scaffold828 WUBlastX LINE_L1-Tx1 21183 22046 90 - . . scaffold828 GLEAN mRNA 14899 24499 0.999674 + . ID=CGI_10007363; scaffold828 WUBlastX LINE_L1-Tx1 21183 22046 90 - . . scaffold828 GLEAN mRNA 15085 78014 0.596994 - . ID=CGI_10007364; scaffold1307 WUBlastX DNA_TcMar-Tc1 458420 458935 138 - . . scaffold1307 GLEAN mRNA 450719 462062 0.999431 - . ID=CGI_10023761; scaffold38510 WUBlastX DNA_Sola 29630 29857 41 + . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold38510 WUBlastX DNA_Sola 31622 32182 56 + . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold1459 WUBlastX LINE_L1-Tx1 15346 16080 114 + . . scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; scaffold1800 WUBlastX LTR_Gypsy-Cigr 6034 7548 328 + . . scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; C34174 WUBlastX LTR_Ngaro 3294 4232 321 + . . C34174 GLEAN mRNA 745 7629 0.544712 - . ID=CGI_10001232; scaffold276 WUBlastX DNA_IS4EU 28500 28679 36 - . . scaffold276 GLEAN mRNA 27405 34935 0.425332 - . ID=CGI_10006435; scaffold42022 WUBlastX DNA_IS4EU 43036 43983 218 + . . scaffold42022 GLEAN mRNA 12310 51169 0.982585 - . ID=CGI_10006049; scaffold42022 WUBlastX DNA_IS4EU 43979 44179 111 + . . scaffold42022 GLEAN mRNA 12310 51169 0.982585 - . ID=CGI_10006049; scaffold42022 WUBlastX DNA_IS4EU 44176 44361 141 + . . scaffold42022 GLEAN mRNA 12310 51169 0.982585 - . ID=CGI_10006049; scaffold1222 WUBlastX LINE_L2 76181 76681 279 + . . scaffold1222 GLEAN mRNA 68719 82791 0.648135 - . ID=CGI_10016236; scaffold1222 WUBlastX LINE_L2 76707 77096 221 + . . scaffold1222 GLEAN mRNA 68719 82791 0.648135 - . ID=CGI_10016236; scaffold425 WUBlastX DNA_Kolobok 143333 143536 96 - . . scaffold425 GLEAN mRNA 143014 144448 0.999415 - . ID=CGI_10025979; scaffold425 WUBlastX DNA_Kolobok 143646 143834 128 - . . scaffold425 GLEAN mRNA 143014 144448 0.999415 - . ID=CGI_10025979; scaffold425 WUBlastX DNA_Kolobok 144023 144448 160 - . . scaffold425 GLEAN mRNA 143014 144448 0.999415 - . ID=CGI_10025979; scaffold85 WUBlastX LTR_Gypsy 353439 354350 335 - . . scaffold85 GLEAN mRNA 332841 357883 0.849566 - . ID=CGI_10020703; scaffold632 WUBlastX LINE_CR1-L2 511617 511838 90 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold599 WUBlastX RC_Helitron 479931 481550 789 - . . scaffold599 GLEAN mRNA 478283 491770 0.99915 - . ID=CGI_10021727; scaffold34106 WUBlastX LTR_DIRS 12219 12440 157 + . . scaffold34106 GLEAN mRNA 1207 14937 0.504518 - . ID=CGI_10001211; scaffold271 WUBlastX LINE_CR1-L2 476956 477714 273 + . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold44 WUBlastX LINE_CR1 369918 370700 26 - . . scaffold44 GLEAN mRNA 369681 374648 1 - . ID=CGI_10016838; scaffold801 WUBlastX DNA_hAT 103021 103335 77 + . . scaffold801 GLEAN mRNA 99805 103731 1 + . ID=CGI_10024064; scaffold40910 WUBlastX LINE_I 25423 25554 37 + . . scaffold40910 GLEAN mRNA 21906 27180 0.999948 + . ID=CGI_10004544; scaffold40910 WUBlastX LINE_I 25798 25929 26 + . . scaffold40910 GLEAN mRNA 21906 27180 0.999948 + . ID=CGI_10004544; scaffold43634 WUBlastX LTR_Gypsy 223331 223855 70 - . . scaffold43634 GLEAN mRNA 223292 224107 0.823589 - . ID=CGI_10011538; scaffold1299 WUBlastX LINE_L1 138494 138661 60 - . . scaffold1299 GLEAN mRNA 132868 184987 0.923911 + . ID=CGI_10007586; scaffold267 WUBlastX DNA_Kolobok 492434 492589 59 + . . scaffold267 GLEAN mRNA 492434 492911 1 + . ID=CGI_10018313; scaffold675 WUBlastX DNA_TcMar-Marin 115942 116193 46 - . . scaffold675 GLEAN mRNA 109657 116904 0.999611 - . ID=CGI_10017856; scaffold1637 WUBlastX DNA_TcMar-Marin 185799 186137 55 + . . scaffold1637 GLEAN mRNA 146684 191770 0.63167 - . ID=CGI_10010279; scaffold1585 WUBlastX LINE_RTE-X 7399 7662 52 + . . scaffold1585 GLEAN mRNA 1530 11079 0.999999 - . ID=CGI_10012582; scaffold36808 WUBlastX LINE_RTE-X 35346 35549 29 + . . scaffold36808 GLEAN mRNA 30018 36587 1 - . ID=CGI_10002147; scaffold1832 WUBlastX DNA_Sola 158678 158839 58 - . . scaffold1832 GLEAN mRNA 158325 163224 0.931923 + . ID=CGI_10018467; scaffold39096 WUBlastX LTR_Gypsy-Cigr 22912 23256 79 + . . scaffold39096 GLEAN mRNA 2759 26289 0.999949 + . ID=CGI_10003146; scaffold41766 WUBlastX LTR_Gypsy 32111 32359 36 - . . scaffold41766 GLEAN mRNA 24624 37050 0.752559 - . ID=CGI_10005601; scaffold1706 WUBlastX DNA_Kolobok-Hyd 3479 3862 47 - . . scaffold1706 GLEAN mRNA 656 3862 1 - . ID=CGI_10003661; scaffold1639 WUBlastX DNA_TcMar-Tc1 37452 37826 106 + . . scaffold1639 GLEAN mRNA 27466 42582 0.863535 + . ID=CGI_10005437; scaffold1785 WUBlastX LTR_Ngaro 648170 648412 24 + . . scaffold1785 GLEAN mRNA 629152 649907 0.539712 - . ID=CGI_10024391; scaffold1179 WUBlastX LTR_Gypsy 1295044 1295274 55 + . . scaffold1179 GLEAN mRNA 1286843 1305972 0.887369 + . ID=CGI_10027419; scaffold41346 WUBlastX DNA_Helitron 33362 33574 90 - . . scaffold41346 GLEAN mRNA 32052 37243 0.990251 - . ID=CGI_10004999; scaffold192 WUBlastX LTR_Gypsy 665028 665183 85 + . . scaffold192 GLEAN mRNA 655198 676504 0.999922 - . ID=CGI_10023723; scaffold39804 WUBlastX LINE_CR1-L2 54137 54493 79 - . . scaffold39804 GLEAN mRNA 45401 55574 0.999999 - . ID=CGI_10003620; scaffold126 WUBlastX DNA_MuDR 579436 579603 82 + . . scaffold126 GLEAN mRNA 576864 580670 0.999598 + . ID=CGI_10019200; scaffold392 WUBlastX LTR_Gypsy 36015 36191 64 - . . scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; scaffold113 WUBlastX LINE_RTE-X 54358 54531 68 + . . scaffold113 GLEAN mRNA 53720 57757 0.859957 + . ID=CGI_10021283; scaffold317 WUBlastX LTR_Gypsy 115719 115847 24 + . . scaffold317 GLEAN mRNA 115633 116375 0.989111 + . ID=CGI_10019344; scaffold71 WUBlastX LTR_Gypsy 269831 269959 24 + . . scaffold71 GLEAN mRNA 268268 281594 0.588785 + . ID=CGI_10015059; scaffold1758 WUBlastX LTR_Gypsy 125338 125466 24 + . . scaffold1758 GLEAN mRNA 124882 125994 0.791435 + . ID=CGI_10007063; scaffold1138 WUBlastX LTR_Gypsy 175441 176451 32 + . . scaffold1138 GLEAN mRNA 174466 179423 0.789389 + . ID=CGI_10015372; scaffold583 WUBlastX LTR_Gypsy 30151 30693 103 + . . scaffold583 GLEAN mRNA 11252 30786 0.538908 + . ID=CGI_10023603; scaffold40282 WUBlastX LTR_Gypsy 30547 30954 115 + . . scaffold40282 GLEAN mRNA 26181 34807 1 + . ID=CGI_10004001; scaffold1831 WUBlastX LINE_I 37682 37810 29 + . . scaffold1831 GLEAN mRNA 30321 42527 0.595655 - . ID=CGI_10002913; scaffold237 WUBlastX LINE_RTE-RTE 590227 590355 22 + . . scaffold237 GLEAN mRNA 590107 590598 0.776648 + . ID=CGI_10021587; scaffold1322 WUBlastX LTR_Gypsy-Cigr 270294 270842 120 + . . scaffold1322 GLEAN mRNA 265135 302274 0.499623 + . ID=CGI_10019472; scaffold1537 WUBlastX LINE_Penelope 8454 8597 20 + . . scaffold1537 GLEAN mRNA 2 9370 0.999999 + . ID=CGI_10001150; scaffold1537 WUBlastX LINE_Penelope 9039 9095 36 + . . scaffold1537 GLEAN mRNA 2 9370 0.999999 + . ID=CGI_10001150; scaffold267 WUBlastX DNA_Harbinger 94552 94836 26 + . . scaffold267 GLEAN mRNA 90014 96204 0.998586 - . ID=CGI_10018285; scaffold733 WUBlastX LINE_Penelope 513412 513699 130 - . . scaffold733 GLEAN mRNA 408619 548638 0.684241 + . ID=CGI_10025876; scaffold184 WUBlastX DNA_PiggyBac 251393 251845 117 - . . scaffold184 GLEAN mRNA 248871 256134 0.689082 + . ID=CGI_10014799; scaffold453 WUBlastX DNA_PiggyBac 358086 358226 31 + . . scaffold453 GLEAN mRNA 346906 361240 0.116749 + . ID=CGI_10015050; scaffold298 WUBlastX LTR_Ngaro 299124 299459 92 + . . scaffold298 GLEAN mRNA 297759 312412 0.999402 - . ID=CGI_10018824; scaffold828 WUBlastX LINE_L1-Tx1 81920 82477 47 - . . scaffold828 GLEAN mRNA 78778 92221 0.986584 - . ID=CGI_10007365; scaffold58 WUBlastX DNA_IS4EU 395853 396140 42 + . . scaffold58 GLEAN mRNA 395705 399423 0.999985 - . ID=CGI_10023143; scaffold1189 WUBlastX LINE_RTE-X 773453 773947 69 - . . scaffold1189 GLEAN mRNA 763568 774596 0.392072 + . ID=CGI_10023832; scaffold43242 WUBlastX DNA_TcMar-Tc1 28909 29196 152 + . . scaffold43242 GLEAN mRNA 27154 33595 0.878599 + . ID=CGI_10009544; scaffold815 WUBlastX LINE_RTE-X 10632 11174 41 + . . scaffold815 GLEAN mRNA 3623 27508 0.999835 - . ID=CGI_10001932; scaffold1210 WUBlastX LINE_RTE-X 219854 220126 33 - . . scaffold1210 GLEAN mRNA 219854 220240 0.999999 - . ID=CGI_10014605; scaffold336 WUBlastX LINE_CR1 216933 217328 109 - . . scaffold336 GLEAN mRNA 208327 217851 1 - . ID=CGI_10012569; scaffold43150 WUBlastX LINE_L2 132349 133071 129 + . . scaffold43150 GLEAN mRNA 121679 138901 1 + . ID=CGI_10009035; scaffold634 WUBlastX LTR_Gypsy 14792 15538 131 - . . scaffold634 GLEAN mRNA 13613 16152 0.502171 - . ID=CGI_10004699; scaffold634 WUBlastX LTR_Gypsy 14792 15538 131 - . . scaffold634 GLEAN mRNA 12476 30002 0.999899 + . ID=CGI_10004698; C34110 WUBlastX DNA_IS4EU 13670 14869 95 - . . C34110 GLEAN mRNA 2583 15463 0.431065 - . ID=CGI_10001212; scaffold20 WUBlastX LTR_Gypsy 752574 753041 195 - . . scaffold20 GLEAN mRNA 752421 753041 1 - . ID=CGI_10023596; scaffold599 WUBlastX LTR_Ngaro 32195 32395 104 - . . scaffold599 GLEAN mRNA 29083 62122 0.696781 + . ID=CGI_10021706; scaffold1652 WUBlastX RC_Helitron 231487 232071 56 - . . scaffold1652 GLEAN mRNA 224467 242523 0.999676 - . ID=CGI_10012393; scaffold35286 WUBlastX LINE_Proto2 6299 7750 158 + . . scaffold35286 GLEAN mRNA 5633 23296 1 + . ID=CGI_10001451; scaffold274 WUBlastX LINE_L1 47803 48192 197 + . . scaffold274 GLEAN mRNA 47250 68838 0.971857 - . ID=CGI_10017009; scaffold1705 WUBlastX LTR_Gypsy 91376 94810 1925 - . . scaffold1705 GLEAN mRNA 68885 100114 0.343232 + . ID=CGI_10007468; scaffold43708 WUBlastX LINE_CR1 238086 238598 143 - . . scaffold43708 GLEAN mRNA 223509 253864 0.998643 + . ID=CGI_10011974; scaffold42866 WUBlastX LTR_Pao 5097 5465 314 - . . scaffold42866 GLEAN mRNA 4204 26490 0.99967 + . ID=CGI_10007989; scaffold483 WUBlastX DNA_Harbinger 10790 11158 128 - . . scaffold483 GLEAN mRNA 10460 12838 0.823526 + . ID=CGI_10007746; scaffold42144 WUBlastX DNA_TcMar-Tc1 108436 109431 244 + . . scaffold42144 GLEAN mRNA 104437 125325 0.993907 - . ID=CGI_10006248; scaffold425 WUBlastX DNA_IS4EU 136712 137749 133 + . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold986 WUBlastX DNA_Harbinger 138128 138277 55 - . . scaffold986 GLEAN mRNA 135296 141072 0.877811 + . ID=CGI_10009960; scaffold986 WUBlastX DNA_Harbinger 138760 139170 99 - . . scaffold986 GLEAN mRNA 135296 141072 0.877811 + . ID=CGI_10009960; scaffold1583 WUBlastX LINE_RTE-X 323471 323725 84 - . . scaffold1583 GLEAN mRNA 302473 325169 0.82008 - . ID=CGI_10025823; scaffold1719 WUBlastX LTR_Ngaro 196546 196887 86 - . . scaffold1719 GLEAN mRNA 177172 199114 0.99732 - . ID=CGI_10014281; scaffold1719 WUBlastX LTR_Ngaro 197444 197848 120 - . . scaffold1719 GLEAN mRNA 177172 199114 0.99732 - . ID=CGI_10014281; scaffold760 WUBlastX LTR_Gypsy-Cigr 799272 799781 353 - . . scaffold760 GLEAN mRNA 798582 806606 0.999169 - . ID=CGI_10024013; scaffold1052 WUBlastX LTR_DIRS 34967 35851 388 - . . scaffold1052 GLEAN mRNA 1917 38966 0.980203 - . ID=CGI_10005467; scaffold286 WUBlastX DNA_TcMar-Tc1 76096 76530 219 - . . scaffold286 GLEAN mRNA 70101 79780 0.990881 + . ID=CGI_10015958; scaffold1036 WUBlastX DNA_Maverick 202430 202834 230 - . . scaffold1036 GLEAN mRNA 202062 206192 0.444605 - . ID=CGI_10019953; scaffold1788 WUBlastX LINE_CR1-L2 17784 18011 84 + . . scaffold1788 GLEAN mRNA 1232 23874 0.618655 + . ID=CGI_10019910; scaffold86 WUBlastX DNA_Kolobok-IS4 227497 227724 27 - . . scaffold86 GLEAN mRNA 226150 228665 0.977065 - . ID=CGI_10028143; scaffold165 WUBlastX LTR_Gypsy 112422 112535 26 + . . scaffold165 GLEAN mRNA 100697 128503 0.998921 + . ID=CGI_10015315; scaffold1440 WUBlastX DNA_Sola 188827 189789 284 + . . scaffold1440 GLEAN mRNA 175302 192419 0.333291 + . ID=CGI_10008358; scaffold1440 WUBlastX DNA_Sola 189782 190339 361 + . . scaffold1440 GLEAN mRNA 175302 192419 0.333291 + . ID=CGI_10008358; scaffold230 WUBlastX LINE_Penelope 208520 209572 601 + . . scaffold230 GLEAN mRNA 178498 220276 0.270873 - . ID=CGI_10011252; scaffold363 WUBlastX LTR_Gypsy 500928 501503 22 - . . scaffold363 GLEAN mRNA 500751 501623 1 - . ID=CGI_10019310; scaffold1093 WUBlastX LINE_Penelope 404434 404619 33 - . . scaffold1093 GLEAN mRNA 404049 410721 0.987785 + . ID=CGI_10019807; scaffold471 WUBlastX LTR_ERV1 67862 68068 26 + . . scaffold471 GLEAN mRNA 53233 71984 0.119206 + . ID=CGI_10026999; C24320 WUBlastX LTR_ERV1 1545 1904 27 - . . C24320 GLEAN mRNA 639 2117 0.999372 - . ID=CGI_10000190; scaffold34 WUBlastX LINE_L1 84588 84899 23 - . . scaffold34 GLEAN mRNA 84090 84899 0.990803 - . ID=CGI_10015929; scaffold34 WUBlastX LINE_L1 84588 84917 23 - . . scaffold34 GLEAN mRNA 80009 87721 0.738396 + . ID=CGI_10015928; scaffold206 WUBlastX LINE_RTE-X 70824 70871 26 + . . scaffold206 GLEAN mRNA 57948 87960 0.702119 + . ID=CGI_10011372; C32984 WUBlastX LINE_RTE-X 5881 6078 46 + . . C32984 GLEAN mRNA 5229 10162 1 - . ID=CGI_10000975; scaffold556 WUBlastX LINE_L1-Tx1 194261 194437 53 + . . scaffold556 GLEAN mRNA 194019 202410 0.999351 - . ID=CGI_10016802; scaffold1255 WUBlastX LTR_Copia 397196 397294 24 + . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold351 WUBlastX LTR_Ngaro 88836 89174 57 - . . scaffold351 GLEAN mRNA 80647 91796 0.490582 - . ID=CGI_10022590; scaffold116 WUBlastX LTR_Gypsy-Cigr 34587 34832 97 - . . scaffold116 GLEAN mRNA 34503 34832 0.733461 - . ID=CGI_10009411; C34174 WUBlastX LTR_Gypsy 1191 1241 22 + . . C34174 GLEAN mRNA 745 7629 0.544712 - . ID=CGI_10001232; scaffold368 WUBlastX DNA_Harbinger 40072 40233 91 - . . scaffold368 GLEAN mRNA 27692 45024 0.754759 - . ID=CGI_10018691; scaffold457 WUBlastX LINE_I 366914 367111 26 + . . scaffold457 GLEAN mRNA 365264 371451 0.499678 - . ID=CGI_10014542; scaffold1322 WUBlastX DNA_IS4EU 463490 463570 49 + . . scaffold1322 GLEAN mRNA 454396 463606 1 + . ID=CGI_10019481; scaffold459 WUBlastX DNA_TcMar-Marin 132198 132302 35 - . . scaffold459 GLEAN mRNA 130507 139915 0.650578 - . ID=CGI_10018170; scaffold1541 WUBlastX DNA_TcMar-Marin 338891 339055 29 + . . scaffold1541 GLEAN mRNA 331127 368552 0.984217 + . ID=CGI_10017895; scaffold1541 WUBlastX DNA_TcMar-Marin 339221 339271 29 + . . scaffold1541 GLEAN mRNA 331127 368552 0.984217 + . ID=CGI_10017895; scaffold1541 WUBlastX DNA_TcMar-Marin 339440 339610 29 + . . scaffold1541 GLEAN mRNA 331127 368552 0.984217 + . ID=CGI_10017895; scaffold709 WUBlastX LINE_RTE-X 315586 315678 25 + . . scaffold709 GLEAN mRNA 310064 322384 0.999026 + . ID=CGI_10020089; scaffold236 WUBlastX LINE_L2 37716 38102 62 + . . scaffold236 GLEAN mRNA 37193 44540 0.565289 + . ID=CGI_10018135; scaffold425 WUBlastX LTR_Gypsy 1024651 1024830 49 - . . scaffold425 GLEAN mRNA 997658 1029515 0.993112 - . ID=CGI_10026011; C34270 WUBlastX DNA_hAT-Blackja 8147 8533 52 + . . C34270 GLEAN mRNA 1937 17133 0.990126 - . ID=CGI_10001262; scaffold1554 WUBlastX DNA_Kolobok-Hyd 55490 55843 49 - . . scaffold1554 GLEAN mRNA 55077 66633 0.275944 - . ID=CGI_10017356; scaffold1717 WUBlastX DNA_hAT 103115 103294 87 - . . scaffold1717 GLEAN mRNA 96290 107438 1 - . ID=CGI_10013393; scaffold847 WUBlastX LTR_Gypsy 65295 65495 97 - . . scaffold847 GLEAN mRNA 61092 71360 0.999451 - . ID=CGI_10022265; scaffold1736 WUBlastX DNA_hAT-Blackja 23195 23443 66 - . . scaffold1736 GLEAN mRNA 13332 24285 0.947251 + . ID=CGI_10020947; scaffold1142 WUBlastX LINE_L1-Tx1 27786 28511 67 + . . scaffold1142 GLEAN mRNA 17099 55959 0.998343 + . ID=CGI_10008525; scaffold790 WUBlastX LINE_L1 222169 222741 97 - . . scaffold790 GLEAN mRNA 221752 222957 0.977562 - . ID=CGI_10013171; scaffold1179 WUBlastX LINE_L1 939540 939812 87 + . . scaffold1179 GLEAN mRNA 936280 947260 0.224969 + . ID=CGI_10027393; scaffold42328 WUBlastX LINE_RTE-X 30738 30893 98 - . . scaffold42328 GLEAN mRNA 29569 31949 0.777732 + . ID=CGI_10006549; scaffold35004 WUBlastX LINE_RTE-X 20174 20329 98 - . . scaffold35004 GLEAN mRNA 18894 21385 1 + . ID=CGI_10001394; scaffold443 WUBlastX LINE_RTE-X 408757 408933 72 - . . scaffold443 GLEAN mRNA 402348 431121 0.212109 - . ID=CGI_10022775; scaffold58 WUBlastX DNA_Sola 551836 552198 55 + . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; scaffold610 WUBlastX LTR_Gypsy 584086 584319 49 - . . scaffold610 GLEAN mRNA 570530 599736 0.974441 - . ID=CGI_10021131; scaffold1314 WUBlastX LINE_Penelope 184979 185398 69 + . . scaffold1314 GLEAN mRNA 179869 191602 0.999193 - . ID=CGI_10009309; C33654 WUBlastX LINE_RTE-X 12014 12313 68 + . . C33654 GLEAN mRNA 2501 14319 0.999996 + . ID=CGI_10001111; scaffold40928 WUBlastX LINE_CR1 39760 39825 40 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold583 WUBlastX LINE_L2 734363 734704 71 - . . scaffold583 GLEAN mRNA 733634 740876 1 + . ID=CGI_10023642; scaffold392 WUBlastX LINE_L2 509663 510157 75 - . . scaffold392 GLEAN mRNA 509201 534293 0.542609 + . ID=CGI_10024222; scaffold1244 WUBlastX LINE_L1-Tx1 99456 99581 39 + . . scaffold1244 GLEAN mRNA 89223 101617 0.299139 + . ID=CGI_10020820; scaffold43242 WUBlastX DNA_TcMar-Tc1 28186 28353 33 + . . scaffold43242 GLEAN mRNA 27154 33595 0.878599 + . ID=CGI_10009544; scaffold601 WUBlastX DNA_IS4EU 488980 489462 70 + . . scaffold601 GLEAN mRNA 483357 489501 0.678522 + . ID=CGI_10026830; scaffold786 WUBlastX DNA_IS4EU 344133 344405 105 + . . scaffold786 GLEAN mRNA 340138 347810 1 + . ID=CGI_10013708; scaffold1347 WUBlastX LINE_RTE-X 141761 142000 58 + . . scaffold1347 GLEAN mRNA 133564 144148 0.49238 + . ID=CGI_10012974; scaffold1838 WUBlastX LINE_L2 335507 336361 96 - . . scaffold1838 GLEAN mRNA 332958 349598 0.563165 + . ID=CGI_10014264; scaffold962 WUBlastX LINE_L2 1087554 1087898 64 + . . scaffold962 GLEAN mRNA 1078349 1089726 1 - . ID=CGI_10027683; scaffold962 WUBlastX LINE_L2 1087892 1088062 82 + . . scaffold962 GLEAN mRNA 1078349 1089726 1 - . ID=CGI_10027683; scaffold1024 WUBlastX LTR_Ngaro 1701250 1701867 75 + . . scaffold1024 GLEAN mRNA 1693215 1725420 0.440752 - . ID=CGI_10028584; scaffold716 WUBlastX LTR_Ngaro 329724 330341 75 + . . scaffold716 GLEAN mRNA 317907 344001 0.842692 + . ID=CGI_10014452; scaffold286 WUBlastX LINE_RTE-X 103461 103925 338 + . . scaffold286 GLEAN mRNA 101905 133971 0.984811 - . ID=CGI_10015959; scaffold286 WUBlastX LINE_RTE-X 104482 104895 149 + . . scaffold286 GLEAN mRNA 101905 133971 0.984811 - . ID=CGI_10015959; scaffold1231 WUBlastX LINE_RTE-BovB 106264 106434 36 + . . scaffold1231 GLEAN mRNA 79934 107425 0.93438 + . ID=CGI_10004703; scaffold43182 WUBlastX LTR_Gypsy 167988 168020 25 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold41452 WUBlastX LINE_L2 63164 63532 41 + . . scaffold41452 GLEAN mRNA 56340 65838 0.524499 + . ID=CGI_10005081; scaffold522 WUBlastX LTR_Gypsy 555972 556139 67 - . . scaffold522 GLEAN mRNA 555460 561290 0.999999 + . ID=CGI_10020338; scaffold1067 WUBlastX DNA_Sola 103040 103210 44 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold1067 WUBlastX DNA_Sola 103863 104180 25 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold1323 WUBlastX LINE_Penelope 11645 12085 133 + . . scaffold1323 GLEAN mRNA 5100 53779 0.182338 + . ID=CGI_10009080; scaffold38978 WUBlastX DNA_TcMar-Tc1 3195 3659 179 + . . scaffold38978 GLEAN mRNA 443 10686 0.499437 + . ID=CGI_10003126; scaffold1401 WUBlastX LINE_RTE-BovB 4183 4497 54 - . . scaffold1401 GLEAN mRNA 431 6619 0.997038 - . ID=CGI_10001278; scaffold415 WUBlastX LINE_RTE-BovB 47028 47825 574 + . . scaffold415 GLEAN mRNA 36227 55197 0.784737 - . ID=CGI_10004218; scaffold1154 WUBlastX LTR_Ngaro 368737 369360 187 + . . scaffold1154 GLEAN mRNA 360464 375818 0.544657 - . ID=CGI_10026164; scaffold1154 WUBlastX LTR_Ngaro 368737 369360 187 + . . scaffold1154 GLEAN mRNA 365982 369978 0.558383 + . ID=CGI_10026165; scaffold36526 WUBlastX LINE_L1-Tx1 20604 20948 53 - . . scaffold36526 GLEAN mRNA 10575 29087 0.999676 + . ID=CGI_10002008; scaffold41242 WUBlastX LINE_L1-Tx1 101942 102118 53 + . . scaffold41242 GLEAN mRNA 97496 109439 0.170639 - . ID=CGI_10004889; scaffold1532 WUBlastX DNA_PiggyBac 610151 610570 113 - . . scaffold1532 GLEAN mRNA 606606 610636 0.502786 - . ID=CGI_10028261; scaffold243 WUBlastX DNA_Kolobok 45771 45845 34 - . . scaffold243 GLEAN mRNA 45508 46823 0.518363 - . ID=CGI_10006814; scaffold243 WUBlastX DNA_Kolobok 45931 46206 165 - . . scaffold243 GLEAN mRNA 45508 46823 0.518363 - . ID=CGI_10006814; scaffold1785 WUBlastX LINE_L1-Tx1 843815 844516 131 + . . scaffold1785 GLEAN mRNA 838180 855518 0.197068 - . ID=CGI_10024401; scaffold29534 WUBlastX LINE_RTE-X 1373 2545 228 + . . scaffold29534 GLEAN mRNA 32 6456 1 - . ID=CGI_10000544; scaffold1507 WUBlastX LTR_Ngaro 13521 14015 118 + . . scaffold1507 GLEAN mRNA 8112 20039 0.965106 - . ID=CGI_10001768; scaffold867 WUBlastX LINE_RTE-X 496322 496840 269 + . . scaffold867 GLEAN mRNA 490506 500925 0.812964 - . ID=CGI_10026232; scaffold1616 WUBlastX LTR_DIRS 93787 94353 264 + . . scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; scaffold39972 WUBlastX LINE_L1 41324 41785 116 + . . scaffold39972 GLEAN mRNA 35765 49275 0.995966 + . ID=CGI_10003708; scaffold1882 WUBlastX LTR_Pao 18121 18228 51 + . . scaffold1882 GLEAN mRNA 8742 29941 0.650712 + . ID=CGI_10010492; scaffold1882 WUBlastX LTR_Pao 18207 18446 176 + . . scaffold1882 GLEAN mRNA 8742 29941 0.650712 + . ID=CGI_10010492; scaffold1882 WUBlastX LTR_Pao 18634 18897 75 + . . scaffold1882 GLEAN mRNA 8742 29941 0.650712 + . ID=CGI_10010492; scaffold1882 WUBlastX LTR_Pao 18998 19423 336 + . . scaffold1882 GLEAN mRNA 8742 29941 0.650712 + . ID=CGI_10010492; scaffold1882 WUBlastX LTR_Pao 19413 19478 34 + . . scaffold1882 GLEAN mRNA 8742 29941 0.650712 + . ID=CGI_10010492; scaffold42598 WUBlastX LINE_RTE-X 52378 53160 200 - . . scaffold42598 GLEAN mRNA 51303 78059 0.0124996 + . ID=CGI_10007333; scaffold90 WUBlastX LTR_Gypsy 394856 396052 834 - . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold1579 WUBlastX LINE_RTE-X 325428 327092 698 + . . scaffold1579 GLEAN mRNA 320598 331843 0.999956 + . ID=CGI_10016869; scaffold1554 WUBlastX DNA_hAT 240390 240533 29 + . . scaffold1554 GLEAN mRNA 240225 241877 0.999996 + . ID=CGI_10017366; scaffold42348 WUBlastX LTR_Gypsy 48922 49119 28 - . . scaffold42348 GLEAN mRNA 47845 51431 0.96594 + . ID=CGI_10006678; scaffold1081 WUBlastX LTR_Gypsy 164346 164606 33 + . . scaffold1081 GLEAN mRNA 151167 168373 0.603491 + . ID=CGI_10007686; scaffold38978 WUBlastX DNA_Harbinger 9996 10214 39 - . . scaffold38978 GLEAN mRNA 443 10686 0.499437 + . ID=CGI_10003126; scaffold86 WUBlastX DNA_Kolobok-Hyd 1352593 1353180 47 - . . scaffold86 GLEAN mRNA 1350663 1354624 0.5119 - . ID=CGI_10028203; scaffold41664 WUBlastX LINE_Penelope 85750 85977 60 + . . scaffold41664 GLEAN mRNA 76394 94658 0.233482 + . ID=CGI_10005416; scaffold41664 WUBlastX LINE_Penelope 87712 87939 60 + . . scaffold41664 GLEAN mRNA 76394 94658 0.233482 + . ID=CGI_10005416; scaffold32 WUBlastX DNA_TcMar-Marin 142622 142846 58 - . . scaffold32 GLEAN mRNA 141633 158953 0.992121 + . ID=CGI_10010068; scaffold722 WUBlastX DNA_TcMar-Marin 242449 242607 44 - . . scaffold722 GLEAN mRNA 213107 274814 0.920529 - . ID=CGI_10012201; scaffold534 WUBlastX DNA_TcMar-Marin 3639 3821 51 + . . scaffold534 GLEAN mRNA 930 8013 1 - . ID=CGI_10005162; scaffold370 WUBlastX LINE_RTE-X 188290 188487 51 - . . scaffold370 GLEAN mRNA 169419 194648 0.857316 - . ID=CGI_10025527; scaffold292 WUBlastX DNA_TcMar-Stowa 54417 54845 34 + . . scaffold292 GLEAN mRNA 51568 72452 0.660019 + . ID=CGI_10003529; scaffold288 WUBlastX LTR_Gypsy 15326 15670 75 - . . scaffold288 GLEAN mRNA 7263 20009 0.942947 + . ID=CGI_10020653; scaffold142 WUBlastX LINE_L2 746524 746997 26 + . . scaffold142 GLEAN mRNA 742581 749967 0.999676 + . ID=CGI_10026769; scaffold1553 WUBlastX DNA_IS4EU 74412 74723 51 - . . scaffold1553 GLEAN mRNA 73907 74723 0.759666 - . ID=CGI_10005363; scaffold58 WUBlastX DNA_IS4EU 399112 399423 51 - . . scaffold58 GLEAN mRNA 395705 399423 0.999985 - . ID=CGI_10023143; scaffold86 WUBlastX DNA_IS4EU 228354 228665 51 - . . scaffold86 GLEAN mRNA 226150 228665 0.977065 - . ID=CGI_10028143; scaffold458 WUBlastX LTR_Ngaro 175999 176259 35 + . . scaffold458 GLEAN mRNA 171659 179488 0.10231 + . ID=CGI_10013591; C34174 WUBlastX LTR_Ngaro 1252 1449 79 + . . C34174 GLEAN mRNA 745 7629 0.544712 - . ID=CGI_10001232; scaffold38822 WUBlastX LTR_Ngaro 8362 8772 76 + . . scaffold38822 GLEAN mRNA 229 9168 0.999998 - . ID=CGI_10003013; scaffold40182 WUBlastX LINE_RTE-X 18937 19143 29 + . . scaffold40182 GLEAN mRNA 7136 27863 0.492081 + . ID=CGI_10003936; scaffold38752 WUBlastX LINE_RTE-X 8992 9168 86 - . . scaffold38752 GLEAN mRNA 1672 15456 0.650722 - . ID=CGI_10002945; scaffold38752 WUBlastX LINE_RTE-X 8992 9168 86 - . . scaffold38752 GLEAN mRNA 5725 16402 0.993907 + . ID=CGI_10002946; scaffold43726 WUBlastX LINE_RTE-X 157303 157434 70 + . . scaffold43726 GLEAN mRNA 145496 185415 0.997652 - . ID=CGI_10012023; scaffold315 WUBlastX LINE_RTE-X 304970 305173 24 + . . scaffold315 GLEAN mRNA 296779 330061 0.935948 + . ID=CGI_10020417; scaffold43076 WUBlastX DNA_IS4EU 67612 67824 79 + . . scaffold43076 GLEAN mRNA 66506 68912 0.997439 + . ID=CGI_10008761; scaffold42866 WUBlastX DNA_IS4EU 71332 71997 105 - . . scaffold42866 GLEAN mRNA 43150 93731 0.871395 + . ID=CGI_10007991; scaffold274 WUBlastX LINE_Penelope 34079 34354 92 - . . scaffold274 GLEAN mRNA 31807 34983 0.990803 + . ID=CGI_10017008; scaffold986 WUBlastX LINE_RTE-X 232818 233171 72 - . . scaffold986 GLEAN mRNA 229802 234961 0.889891 - . ID=CGI_10009965; scaffold43660 WUBlastX DNA_TcMar-Fot1 270568 270978 97 + . . scaffold43660 GLEAN mRNA 262639 273396 0.998201 - . ID=CGI_10011673; scaffold43660 WUBlastX LINE_Penelope 127440 127637 64 - . . scaffold43660 GLEAN mRNA 125748 138289 0.998274 + . ID=CGI_10011663; scaffold398 WUBlastX LINE_L1 3274 3912 53 - . . scaffold398 GLEAN mRNA 896 15325 0.911211 + . ID=CGI_10004360; scaffold459 WUBlastX DNA_Merlin 51150 51503 98 - . . scaffold459 GLEAN mRNA 48177 82844 0.45554 + . ID=CGI_10018167; scaffold113 WUBlastX LTR_Ngaro 117302 117922 73 + . . scaffold113 GLEAN mRNA 112752 117970 0.458528 + . ID=CGI_10021286; C27694 WUBlastX DNA_Maverick 2532 2566 46 - . . C27694 GLEAN mRNA 2532 3020 1 - . ID=CGI_10000376; scaffold1097 WUBlastX LTR_Ngaro 578431 578562 31 + . . scaffold1097 GLEAN mRNA 566282 590466 0.579339 - . ID=CGI_10024535; scaffold1354 WUBlastX LINE_L1-Tx1 170733 170828 32 - . . scaffold1354 GLEAN mRNA 170031 176711 0.9991 - . ID=CGI_10014934; scaffold1680 WUBlastX LTR_Gypsy 70049 72937 774 + . . scaffold1680 GLEAN mRNA 60137 87573 0.648461 - . ID=CGI_10004140; scaffold42 WUBlastX LINE_CR1 205224 205319 37 + . . scaffold42 GLEAN mRNA 204584 223955 0.545569 + . ID=CGI_10018912; scaffold696 WUBlastX LINE_RTE-X 11591 12022 114 + . . scaffold696 GLEAN mRNA 7653 15168 0.999968 + . ID=CGI_10003719; scaffold378 WUBlastX LINE_Jockey 243570 244796 54 - . . scaffold378 GLEAN mRNA 222180 244864 0.996816 + . ID=CGI_10017641; scaffold336 WUBlastX LINE_RTE-X 215683 216147 62 - . . scaffold336 GLEAN mRNA 208327 217851 1 - . ID=CGI_10012569; scaffold169 WUBlastX LTR_Gypsy 629556 630692 871 + . . scaffold169 GLEAN mRNA 628224 637732 0.973288 - . ID=CGI_10022960; C30458 WUBlastX LINE_L1 5080 5529 193 + . . C30458 GLEAN mRNA 986 6010 1 - . ID=CGI_10000625; scaffold37678 WUBlastX DNA_Helitron 11840 14506 755 - . . scaffold37678 GLEAN mRNA 3054 19948 0.906607 - . ID=CGI_10002431; scaffold337 WUBlastX LTR_Gypsy 490375 490767 91 - . . scaffold337 GLEAN mRNA 483649 507534 0.56595 + . ID=CGI_10028067; scaffold485 WUBlastX LINE_RTE-BovB 738428 739498 122 + . . scaffold485 GLEAN mRNA 737910 749557 0.981296 + . ID=CGI_10024192; scaffold485 WUBlastX LINE_RTE-BovB 738428 739498 122 + . . scaffold485 GLEAN mRNA 734638 750215 1 - . ID=CGI_10024191; scaffold1402 WUBlastX DNA_TcMar-Tc1 403981 404553 22 + . . scaffold1402 GLEAN mRNA 402740 419521 0.863535 + . ID=CGI_10017593; scaffold298 WUBlastX DNA_Maverick 12545 15604 2229 - . . scaffold298 GLEAN mRNA 12121 16223 1 - . ID=CGI_10018816; scaffold1815 WUBlastX LTR_Pao 46347 47381 163 - . . scaffold1815 GLEAN mRNA 41524 49047 0.999999 + . ID=CGI_10010261; scaffold39640 WUBlastX DNA_IS4EU 51093 51254 100 - . . scaffold39640 GLEAN mRNA 51087 54120 0.557203 - . ID=CGI_10003501; scaffold43146 WUBlastX DNA_Kolobok-IS4 102864 103028 58 - . . scaffold43146 GLEAN mRNA 80112 107835 0.644637 + . ID=CGI_10009042; scaffold43146 WUBlastX DNA_Kolobok-IS4 105006 105080 32 - . . scaffold43146 GLEAN mRNA 80112 107835 0.644637 + . ID=CGI_10009042; scaffold43146 WUBlastX DNA_Kolobok-IS4 106067 106387 54 - . . scaffold43146 GLEAN mRNA 80112 107835 0.644637 + . ID=CGI_10009042; scaffold1097 WUBlastX LTR_Gypsy 861771 862253 68 + . . scaffold1097 GLEAN mRNA 848149 863853 0.999116 + . ID=CGI_10024555; scaffold82 WUBlastX LINE_RTE-X 185134 185523 271 - . . scaffold82 GLEAN mRNA 181182 187437 1 + . ID=CGI_10025244; scaffold58 WUBlastX DNA_Crypton 460882 461451 251 - . . scaffold58 GLEAN mRNA 456330 469512 0.944736 - . ID=CGI_10023145; scaffold230 WUBlastX DNA_hAT-Tip100 129640 129780 55 - . . scaffold230 GLEAN mRNA 126666 144461 0.534748 - . ID=CGI_10011251; scaffold616 WUBlastX LINE_L1-Tx1 128071 128757 196 + . . scaffold616 GLEAN mRNA 126038 136791 1 + . ID=CGI_10015389; scaffold142 WUBlastX DNA_Harbinger 1219135 1220073 365 - . . scaffold142 GLEAN mRNA 1216819 1221683 0.999676 + . ID=CGI_10026797; scaffold43388 WUBlastX DNA_IS4EU 219717 219797 27 - . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold1186 WUBlastX DNA_IS4EU 184672 184812 31 - . . scaffold1186 GLEAN mRNA 184618 184851 1 - . ID=CGI_10010596; scaffold38026 WUBlastX LTR_Gypsy 26409 26840 83 + . . scaffold38026 GLEAN mRNA 24330 29871 1 - . ID=CGI_10002428; scaffold1350 WUBlastX LINE_RTE-X 398590 398775 20 - . . scaffold1350 GLEAN mRNA 393414 411683 0.728523 + . ID=CGI_10017317; scaffold419 WUBlastX LINE_L1-Tx1 1078644 1080155 381 + . . scaffold419 GLEAN mRNA 1076054 1088367 0.937506 + . ID=CGI_10028386; scaffold42648 WUBlastX LTR_Pao 170105 170170 21 - . . scaffold42648 GLEAN mRNA 167771 174774 0.98388 - . ID=CGI_10007395; scaffold347 WUBlastX LTR_Pao 596347 597837 545 - . . scaffold347 GLEAN mRNA 592653 598604 0.749141 + . ID=CGI_10021803; scaffold22 WUBlastX LTR_Pao 1073340 1073468 41 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold1788 WUBlastX LINE_R2-Hero 600992 601075 192 + . . scaffold1788 GLEAN mRNA 585785 601075 0.975766 + . ID=CGI_10019941; scaffold847 WUBlastX LTR_DIRS 511358 511894 163 - . . scaffold847 GLEAN mRNA 507894 513184 0.74223 - . ID=CGI_10022280; scaffold948 WUBlastX LTR_Pao 417891 418457 25 - . . scaffold948 GLEAN mRNA 412682 418646 0.813847 - . ID=CGI_10020024; scaffold317 WUBlastX LINE_L2 149055 149144 38 - . . scaffold317 GLEAN mRNA 146394 150282 0.992482 + . ID=CGI_10019346; scaffold606 WUBlastX LINE_CR1-L2 296790 297080 58 + . . scaffold606 GLEAN mRNA 296790 297152 1 + . ID=CGI_10012954; scaffold43036 WUBlastX LINE_CR1-L2 171647 171790 45 + . . scaffold43036 GLEAN mRNA 148188 171820 0.999804 + . ID=CGI_10008498; scaffold272 WUBlastX LINE_L2 819 1061 24 + . . scaffold272 GLEAN mRNA 399 2072 0.555898 + . ID=CGI_10003053; scaffold253 WUBlastX LTR_Gypsy 3489 3971 20 - . . scaffold253 GLEAN mRNA 2368 20050 0.999351 + . ID=CGI_10003487; scaffold44 WUBlastX LINE_RTE-X 388386 388610 52 + . . scaffold44 GLEAN mRNA 377498 394536 0.863441 - . ID=CGI_10016839; scaffold447 WUBlastX LINE_RTE-X 390373 390483 51 + . . scaffold447 GLEAN mRNA 368288 390714 0.81168 + . ID=CGI_10014236; scaffold818 WUBlastX LINE_CR1-L2 278876 279004 29 - . . scaffold818 GLEAN mRNA 276309 285154 0.988898 + . ID=CGI_10014515; scaffold962 WUBlastX LINE_L2 747331 747498 56 + . . scaffold962 GLEAN mRNA 737761 749184 0.279681 - . ID=CGI_10027664; scaffold1838 WUBlastX LINE_Proto2 364280 364492 60 + . . scaffold1838 GLEAN mRNA 361613 368125 0.631432 + . ID=CGI_10014266; scaffold1097 WUBlastX LINE_L1-Tx1 232049 232303 30 - . . scaffold1097 GLEAN mRNA 224191 235119 0.686153 - . ID=CGI_10024512; scaffold1778 WUBlastX LTR_Copia 41318 41452 29 + . . scaffold1778 GLEAN mRNA 34936 42863 0.220539 - . ID=CGI_10002479; scaffold896 WUBlastX LINE_RTE-X 123519 123644 50 + . . scaffold896 GLEAN mRNA 120712 129433 0.394415 + . ID=CGI_10022834; scaffold3 WUBlastX LINE_RTE-X 143520 143714 46 - . . scaffold3 GLEAN mRNA 140543 146890 0.72249 + . ID=CGI_10027280; scaffold43366 WUBlastX LINE_RTE-BovB 68105 68272 101 + . . scaffold43366 GLEAN mRNA 17620 68275 0.671891 + . ID=CGI_10009982; scaffold1247 WUBlastX DNA_TcMar-Tc1 181983 182192 73 + . . scaffold1247 GLEAN mRNA 173109 184348 0.886383 - . ID=CGI_10008950; scaffold660 WUBlastX DNA_Crypton 136827 137003 76 + . . scaffold660 GLEAN mRNA 129253 184428 0.855126 - . ID=CGI_10013751; scaffold1366 WUBlastX DNA_Crypton 163773 163982 46 - . . scaffold1366 GLEAN mRNA 163589 176739 0.942246 + . ID=CGI_10012296; scaffold588 WUBlastX LINE_L2 71973 72635 38 + . . scaffold588 GLEAN mRNA 27826 75048 0.701659 + . ID=CGI_10016209; scaffold43182 WUBlastX DNA_TcMar-Tc1 99638 99811 40 + . . scaffold43182 GLEAN mRNA 97443 102816 0.800679 + . ID=CGI_10009200; scaffold1590 WUBlastX LINE_Penelope 121787 122014 73 + . . scaffold1590 GLEAN mRNA 117504 127573 0.611115 - . ID=CGI_10005511; scaffold1009 WUBlastX DNA_hAT 497005 497202 60 + . . scaffold1009 GLEAN mRNA 486872 502575 0.999001 - . ID=CGI_10028738; scaffold885 WUBlastX LTR_DIRS 1017665 1018270 40 + . . scaffold885 GLEAN mRNA 1005329 1048267 0.991835 - . ID=CGI_10025234; scaffold40134 WUBlastX DNA_Harbinger 36950 37096 44 - . . scaffold40134 GLEAN mRNA 35614 38090 0.665574 - . ID=CGI_10003882; scaffold1656 WUBlastX LINE_RTE-BovB 73541 73825 75 + . . scaffold1656 GLEAN mRNA 45907 73911 0.308617 - . ID=CGI_10006142; scaffold1322 WUBlastX LTR_Ngaro 587851 588180 78 - . . scaffold1322 GLEAN mRNA 571511 590238 0.999351 - . ID=CGI_10019486; scaffold90 WUBlastX LTR_Gypsy 136636 136956 23 + . . scaffold90 GLEAN mRNA 135730 142790 0.547035 + . ID=CGI_10015161; scaffold911 WUBlastX DNA_hAT-Tip100 107736 108155 116 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold1093 WUBlastX LINE_Penelope 404598 404882 42 - . . scaffold1093 GLEAN mRNA 404049 410721 0.987785 + . ID=CGI_10019807; scaffold42408 WUBlastX LINE_L1-Tx1 113042 113380 46 + . . scaffold42408 GLEAN mRNA 111494 115012 0.832978 - . ID=CGI_10006751; scaffold544 WUBlastX LINE_L1 209771 209968 46 - . . scaffold544 GLEAN mRNA 202069 215253 0.999676 + . ID=CGI_10022552; scaffold41732 WUBlastX LINE_L2 58448 59113 56 - . . scaffold41732 GLEAN mRNA 19646 61723 0.444801 - . ID=CGI_10005478; scaffold424 WUBlastX DNA_Kolobok-Hyd 125057 125233 51 - . . scaffold424 GLEAN mRNA 124459 130627 0.999672 - . ID=CGI_10014354; scaffold424 WUBlastX DNA_Kolobok-Hyd 125537 125878 69 - . . scaffold424 GLEAN mRNA 124459 130627 0.999672 - . ID=CGI_10014354; scaffold86 WUBlastX LTR_Gypsy 806043 806681 1039 - . . scaffold86 GLEAN mRNA 805962 806681 0.999999 - . ID=CGI_10028176; scaffold86 WUBlastX LTR_Gypsy 806043 807479 1039 - . . scaffold86 GLEAN mRNA 804736 823787 1 + . ID=CGI_10028175; scaffold42030 WUBlastX LINE_RTE-X 78622 78963 52 + . . scaffold42030 GLEAN mRNA 73599 103190 0.98897 + . ID=CGI_10006046; scaffold1698 WUBlastX LINE_CR1-L2 125050 125613 91 + . . scaffold1698 GLEAN mRNA 115530 127809 0.999999 + . ID=CGI_10019370; scaffold630 WUBlastX LTR_Gypsy 375623 375883 190 - . . scaffold630 GLEAN mRNA 373403 389900 0.98161 - . ID=CGI_10018333; scaffold760 WUBlastX LINE_L1-Tx1 130774 130974 75 + . . scaffold760 GLEAN mRNA 117770 147032 0.706686 + . ID=CGI_10023976; scaffold43538 WUBlastX LTR_Gypsy 34568 34918 77 + . . scaffold43538 GLEAN mRNA 31086 35366 0.988787 - . ID=CGI_10010813; scaffold544 WUBlastX DNA_TcMar-Pogo 739066 739362 144 + . . scaffold544 GLEAN mRNA 727518 748903 0.982522 - . ID=CGI_10022583; scaffold43076 WUBlastX LTR_Gypsy 196057 196986 110 - . . scaffold43076 GLEAN mRNA 186716 211039 0.795025 + . ID=CGI_10008770; scaffold1532 WUBlastX LINE_I 411798 412280 38 - . . scaffold1532 GLEAN mRNA 405806 428910 0.729212 + . ID=CGI_10028250; scaffold42144 WUBlastX LINE_RTE-X 124408 124779 156 + . . scaffold42144 GLEAN mRNA 104437 125325 0.993907 - . ID=CGI_10006248; scaffold165 WUBlastX LTR_Gypsy 111139 111867 524 + . . scaffold165 GLEAN mRNA 100697 128503 0.998921 + . ID=CGI_10015315; scaffold165 WUBlastX LTR_Gypsy 111846 112427 359 + . . scaffold165 GLEAN mRNA 100697 128503 0.998921 + . ID=CGI_10015315; scaffold456 WUBlastX LTR_Ngaro 137942 138583 187 + . . scaffold456 GLEAN mRNA 102025 155096 0.577611 + . ID=CGI_10006863; scaffold458 WUBlastX LTR_Ngaro 171914 172342 191 + . . scaffold458 GLEAN mRNA 171659 179488 0.10231 + . ID=CGI_10013591; scaffold854 WUBlastX LTR_Pao 703027 703824 44 + . . scaffold854 GLEAN mRNA 698978 729843 0.21294 + . ID=CGI_10022264; scaffold490 WUBlastX DNA_TcMar-Fot1 115708 116517 207 - . . scaffold490 GLEAN mRNA 110595 119533 0.717521 + . ID=CGI_10009162; scaffold1347 WUBlastX DNA_IS4EU 24887 25108 40 + . . scaffold1347 GLEAN mRNA 21277 29429 0.935835 - . ID=CGI_10012972; scaffold1347 WUBlastX DNA_IS4EU 26433 26867 97 + . . scaffold1347 GLEAN mRNA 21277 29429 0.935835 - . ID=CGI_10012972; scaffold481 WUBlastX LINE_L2 1216428 1216892 291 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold815 WUBlastX LINE_RTE-X 11395 11550 90 + . . scaffold815 GLEAN mRNA 3623 27508 0.999835 - . ID=CGI_10001932; scaffold274 WUBlastX LTR_Gypsy 120427 120612 33 - . . scaffold274 GLEAN mRNA 114872 127603 0.900499 - . ID=CGI_10017014; scaffold274 WUBlastX LTR_Gypsy 120427 120612 33 - . . scaffold274 GLEAN mRNA 110645 138083 0.999675 + . ID=CGI_10017013; scaffold230 WUBlastX LTR_Gypsy 251654 251869 64 + . . scaffold230 GLEAN mRNA 249649 283875 0.439776 - . ID=CGI_10011254; scaffold315 WUBlastX DNA_Kolobok-IS4 30489 31724 346 + . . scaffold315 GLEAN mRNA 30489 37096 0.901071 + . ID=CGI_10020398; scaffold588 WUBlastX LTR_DIRS 416940 417866 453 + . . scaffold588 GLEAN mRNA 413724 423614 0.849231 + . ID=CGI_10016228; scaffold224 WUBlastX DNA_TcMar-Tc1 53068 53259 124 - . . scaffold224 GLEAN mRNA 41298 72438 0.99912 - . ID=CGI_10003616; scaffold224 WUBlastX DNA_TcMar-Tc1 53642 54097 91 - . . scaffold224 GLEAN mRNA 41298 72438 0.99912 - . ID=CGI_10003616; scaffold368 WUBlastX DNA_IS4EU 90561 91697 556 - . . scaffold368 GLEAN mRNA 78208 92005 0.999415 - . ID=CGI_10018696; scaffold1862 WUBlastX DNA_IS4EU 660073 661257 557 - . . scaffold1862 GLEAN mRNA 655247 661635 1 - . ID=CGI_10021923; scaffold479 WUBlastX LTR_Ngaro 423994 424134 49 + . . scaffold479 GLEAN mRNA 420249 425742 0.99319 + . ID=CGI_10015702; scaffold43084 WUBlastX LINE_Penelope 3387 4136 497 - . . scaffold43084 GLEAN mRNA 1752 8491 0.988218 - . ID=CGI_10008563; scaffold43782 WUBlastX LINE_RTE-X 111476 112273 106 - . . scaffold43782 GLEAN mRNA 102494 129639 0.999947 + . ID=CGI_10012366; scaffold41372 WUBlastX LINE_L1-Tx1 69953 70150 72 - . . scaffold41372 GLEAN mRNA 67893 79286 0.261998 + . ID=CGI_10005012; scaffold204 WUBlastX DNA_Chapaev 936535 936741 24 + . . scaffold204 GLEAN mRNA 936505 937175 0.911804 + . ID=CGI_10026139; scaffold580 WUBlastX LTR_Pao 543245 543409 34 - . . scaffold580 GLEAN mRNA 534985 547949 0.999377 + . ID=CGI_10020515; scaffold38210 WUBlastX LTR_Pao 44192 44710 28 - . . scaffold38210 GLEAN mRNA 43454 45043 0.810408 - . ID=CGI_10002675; scaffold619 WUBlastX LINE_L2 146245 146328 25 - . . scaffold619 GLEAN mRNA 133305 165039 0.859619 - . ID=CGI_10025755; scaffold1368 WUBlastX LINE_L2 32666 33397 26 - . . scaffold1368 GLEAN mRNA 31913 33640 1 - . ID=CGI_10002238; scaffold43272 WUBlastX DNA_Kolobok 118721 118927 69 - . . scaffold43272 GLEAN mRNA 115202 130908 0.999617 - . ID=CGI_10009669; scaffold40164 WUBlastX LINE_L1-Tx1 7751 7945 63 + . . scaffold40164 GLEAN mRNA 2839 12364 0.429437 - . ID=CGI_10003898; scaffold221 WUBlastX LTR_Gypsy 82988 83374 63 + . . scaffold221 GLEAN mRNA 82988 83629 0.999661 + . ID=CGI_10008345; scaffold35446 WUBlastX LTR_ERV1 18141 18650 57 - . . scaffold35446 GLEAN mRNA 11417 21109 0.682042 + . ID=CGI_10001510; scaffold1385 WUBlastX LINE_RTE-X 24613 24885 26 + . . scaffold1385 GLEAN mRNA 22815 31330 0.957817 - . ID=CGI_10013834; scaffold1751 WUBlastX LINE_RTE-X 15673 15969 27 + . . scaffold1751 GLEAN mRNA 1921 19795 0.705782 - . ID=CGI_10010082; scaffold625 WUBlastX LTR_Gypsy 762204 762314 25 - . . scaffold625 GLEAN mRNA 750522 771270 0.999954 - . ID=CGI_10023437; scaffold786 WUBlastX LINE_L1-Tx1 346234 346623 55 + . . scaffold786 GLEAN mRNA 340138 347810 1 + . ID=CGI_10013708; scaffold117 WUBlastX LINE_L2 53292 53525 32 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold44006 WUBlastX LINE_CR1-L2 430338 430745 42 + . . scaffold44006 GLEAN mRNA 422154 432525 0.999395 - . ID=CGI_10015593; scaffold596 WUBlastX LTR_Gypsy 210129 210215 36 + . . scaffold596 GLEAN mRNA 209515 220415 0.999343 + . ID=CGI_10009578; scaffold156 WUBlastX DNA_Kolobok-Hyd 689443 689514 22 - . . scaffold156 GLEAN mRNA 669682 693584 0.721042 - . ID=CGI_10026516; scaffold200 WUBlastX LTR_Gypsy 46242 46961 64 + . . scaffold200 GLEAN mRNA 44225 49093 0.999107 + . ID=CGI_10006224; scaffold163 WUBlastX LTR_Gypsy 476329 476877 59 + . . scaffold163 GLEAN mRNA 440738 483510 0.311673 + . ID=CGI_10018629; scaffold1785 WUBlastX LINE_I 72975 73493 22 - . . scaffold1785 GLEAN mRNA 65260 86762 0.990934 - . ID=CGI_10024355; C35006 WUBlastX DNA_IS4EU 2106 2204 29 - . . C35006 GLEAN mRNA 2016 7654 0.999998 - . ID=CGI_10001396; scaffold1785 WUBlastX LINE_L1 843055 843504 40 + . . scaffold1785 GLEAN mRNA 838180 855518 0.197068 - . ID=CGI_10024401; scaffold1081 WUBlastX LINE_Penelope 165703 166212 44 + . . scaffold1081 GLEAN mRNA 151167 168373 0.603491 + . ID=CGI_10007686; scaffold581 WUBlastX LINE_L1-Tx1 275640 276038 42 - . . scaffold581 GLEAN mRNA 217971 276528 0.207483 - . ID=CGI_10013742; scaffold12 WUBlastX LTR_Gypsy 351148 351246 35 + . . scaffold12 GLEAN mRNA 326477 354530 0.999321 + . ID=CGI_10018042; scaffold156 WUBlastX DNA_hAT-Tip100 238869 239075 94 - . . scaffold156 GLEAN mRNA 233811 241733 0.990897 + . ID=CGI_10026484; scaffold743 WUBlastX LINE_RTE-BovB 108867 108947 25 + . . scaffold743 GLEAN mRNA 83791 109134 0.449406 + . ID=CGI_10008614; scaffold419 WUBlastX DNA_PiggyBac 39924 39983 39 + . . scaffold419 GLEAN mRNA 39110 43712 0.992133 + . ID=CGI_10028318; scaffold1427 WUBlastX LTR_Gypsy 84946 84978 21 + . . scaffold1427 GLEAN mRNA 83286 88793 0.375742 + . ID=CGI_10005230; scaffold1286 WUBlastX LINE_CR1 4799 5122 59 - . . scaffold1286 GLEAN mRNA 2541 6494 0.999936 - . ID=CGI_10009504; scaffold1024 WUBlastX LINE_L2 24193 24510 101 - . . scaffold1024 GLEAN mRNA 24193 35895 0.99814 - . ID=CGI_10028518; scaffold90 WUBlastX DNA_hAT-hATw 391919 392689 65 + . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; C28512 WUBlastX DNA_Kolobok-IS4 3730 4095 43 + . . C28512 GLEAN mRNA 3694 4575 1 + . ID=CGI_10000437; C28512 WUBlastX DNA_Kolobok-IS4 4435 4572 82 + . . C28512 GLEAN mRNA 3694 4575 1 + . ID=CGI_10000437; scaffold536 WUBlastX LINE_RTE-X 85710 85763 31 - . . scaffold536 GLEAN mRNA 68482 93233 0.999348 + . ID=CGI_10006670; scaffold143 WUBlastX LINE_CR1-L2 215288 215515 118 + . . scaffold143 GLEAN mRNA 211939 221171 0.564856 - . ID=CGI_10010016; scaffold664 WUBlastX LTR_Ngaro 577636 577947 70 - . . scaffold664 GLEAN mRNA 547583 596494 0.239728 + . ID=CGI_10021456; scaffold894 WUBlastX LINE_L1-Tx1 181431 181766 96 + . . scaffold894 GLEAN mRNA 171936 185580 0.999624 + . ID=CGI_10008548; scaffold894 WUBlastX LINE_L1-Tx1 183584 183919 96 + . . scaffold894 GLEAN mRNA 171936 185580 0.999624 + . ID=CGI_10008548; scaffold804 WUBlastX LTR_Gypsy 179544 180275 115 - . . scaffold804 GLEAN mRNA 171131 181585 0.935885 + . ID=CGI_10014858; scaffold128 WUBlastX LINE_R1 651959 652027 21 + . . scaffold128 GLEAN mRNA 640571 661683 0.836156 - . ID=CGI_10021536; scaffold1186 WUBlastX LINE_L1 237724 238560 78 + . . scaffold1186 GLEAN mRNA 224167 244631 0.351511 - . ID=CGI_10010599; scaffold4 WUBlastX LINE_L1-Tx1 347009 347620 68 - . . scaffold4 GLEAN mRNA 343942 353209 0.759631 + . ID=CGI_10021174; scaffold4 WUBlastX LINE_L1-Tx1 347692 349815 809 - . . scaffold4 GLEAN mRNA 343942 353209 0.759631 + . ID=CGI_10021174; scaffold313 WUBlastX DNA_En-Spm 614837 615205 64 - . . scaffold313 GLEAN mRNA 612366 622273 0.647784 - . ID=CGI_10026614; scaffold754 WUBlastX DNA_Kolobok-IS4 140903 141508 157 + . . scaffold754 GLEAN mRNA 139769 141980 1 - . ID=CGI_10014067; scaffold42568 WUBlastX DNA_NOF? 35035 35700 128 + . . scaffold42568 GLEAN mRNA 21645 48345 0.50892 + . ID=CGI_10007265; scaffold481 WUBlastX DNA_Sola 1214346 1215020 111 + . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold43146 WUBlastX LINE_L1-Tx1 197714 198019 50 + . . scaffold43146 GLEAN mRNA 193579 199513 0.963019 - . ID=CGI_10009047; scaffold198 WUBlastX LTR_Gypsy 797158 798249 59 + . . scaffold198 GLEAN mRNA 771982 806817 0.999999 + . ID=CGI_10027821; scaffold925 WUBlastX LTR_Gypsy-Cigr 250398 251159 193 - . . scaffold925 GLEAN mRNA 245750 251543 0.996749 - . ID=CGI_10017422; scaffold1459 WUBlastX LINE_L1 17798 17914 20 + . . scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; scaffold1179 WUBlastX LTR_Gypsy 24077 24265 20 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold1663 WUBlastX LINE_L2 109874 110905 139 + . . scaffold1663 GLEAN mRNA 68504 119090 0.88293 - . ID=CGI_10009864; scaffold156 WUBlastX LINE_L2 723560 723727 52 + . . scaffold156 GLEAN mRNA 716803 736043 0.463925 - . ID=CGI_10026517; scaffold156 WUBlastX LINE_L2 723726 725780 1152 + . . scaffold156 GLEAN mRNA 716803 736043 0.463925 - . ID=CGI_10026517; scaffold156 WUBlastX LINE_L2 725782 726705 535 + . . scaffold156 GLEAN mRNA 716803 736043 0.463925 - . ID=CGI_10026517; scaffold502 WUBlastX LTR_Ngaro 79229 79708 258 - . . scaffold502 GLEAN mRNA 66995 88059 0.642831 + . ID=CGI_10024313; scaffold685 WUBlastX LINE_RTE-X 53096 53186 37 - . . scaffold685 GLEAN mRNA 53096 59872 1 + . ID=CGI_10004491; scaffold733 WUBlastX LINE_L1-Tx1 889524 889736 31 - . . scaffold733 GLEAN mRNA 864535 893177 0.998838 + . ID=CGI_10025893; scaffold43920 WUBlastX LINE_CR1 55916 56587 196 + . . scaffold43920 GLEAN mRNA 44281 62633 0.726327 + . ID=CGI_10013987; scaffold20 WUBlastX LINE_CR1 211482 212153 196 + . . scaffold20 GLEAN mRNA 206236 212825 0.728523 + . ID=CGI_10023565; scaffold38292 WUBlastX LTR_Ngaro 34026 34916 222 - . . scaffold38292 GLEAN mRNA 26899 37380 0.771739 - . ID=CGI_10002691; scaffold305 WUBlastX LTR_Gypsy 124168 128310 2394 - . . scaffold305 GLEAN mRNA 114232 133246 0.986225 - . ID=CGI_10019117; scaffold419 WUBlastX LTR_Gypsy-Cigr 681034 684744 2539 - . . scaffold419 GLEAN mRNA 671072 685906 0.998967 - . ID=CGI_10028358; scaffold504 WUBlastX LTR_Gypsy 6346 6660 73 + . . scaffold504 GLEAN mRNA 4327 7355 1 - . ID=CGI_10016012; scaffold504 WUBlastX LTR_Gypsy 6656 7048 295 + . . scaffold504 GLEAN mRNA 4327 7355 1 - . ID=CGI_10016012; scaffold236 WUBlastX DNA_Kolobok 230557 230817 104 + . . scaffold236 GLEAN mRNA 229568 231611 1 + . ID=CGI_10018139; scaffold265 WUBlastX LTR_Ngaro 66239 67180 336 - . . scaffold265 GLEAN mRNA 64182 72514 0.643455 - . ID=CGI_10003429; scaffold39470 WUBlastX LTR_Ngaro 20254 21159 320 - . . scaffold39470 GLEAN mRNA 18519 32880 0.998788 - . ID=CGI_10003379; scaffold1087 WUBlastX LTR_Gypsy 14788 15588 415 + . . scaffold1087 GLEAN mRNA 1458 16224 0.544547 + . ID=CGI_10001183; scaffold36806 WUBlastX LTR_Ngaro 24091 24990 415 + . . scaffold36806 GLEAN mRNA 22975 34393 0.994851 + . ID=CGI_10002150; scaffold337 WUBlastX DNA_Helitron 915114 915299 74 - . . scaffold337 GLEAN mRNA 912502 926173 0.999981 - . ID=CGI_10028087; scaffold586 WUBlastX DNA_TcMar-Tc1 459342 459683 34 + . . scaffold586 GLEAN mRNA 448256 475873 0.905445 - . ID=CGI_10018008; scaffold586 WUBlastX DNA_TcMar-Tc1 459632 460252 380 + . . scaffold586 GLEAN mRNA 448256 475873 0.905445 - . ID=CGI_10018008; scaffold1329 WUBlastX DNA_hAT-Ac 93898 94077 36 - . . scaffold1329 GLEAN mRNA 77218 94406 0.816606 - . ID=CGI_10015782; scaffold962 WUBlastX DNA_TcMar-Fot1 801599 803212 578 + . . scaffold962 GLEAN mRNA 772898 820857 0.754198 - . ID=CGI_10027665; scaffold257 WUBlastX LTR_DIRS 426563 428605 808 - . . scaffold257 GLEAN mRNA 408517 430332 0.376756 - . ID=CGI_10027910; scaffold257 WUBlastX LTR_DIRS 426563 428605 808 - . . scaffold257 GLEAN mRNA 415447 429822 0.479397 + . ID=CGI_10027911; scaffold954 WUBlastX DNA_Academ 183919 184122 27 - . . scaffold954 GLEAN mRNA 183919 184182 0.57353 - . ID=CGI_10010744; scaffold192 WUBlastX LTR_Pao 553442 553606 81 - . . scaffold192 GLEAN mRNA 531371 556893 0.543544 + . ID=CGI_10023721; scaffold891 WUBlastX DNA_En-Spm 191083 191322 57 + . . scaffold891 GLEAN mRNA 189251 197847 0.702385 + . ID=CGI_10009074; scaffold1858 WUBlastX RC_Helitron 89153 89269 21 - . . scaffold1858 GLEAN mRNA 89030 106039 0.999249 - . ID=CGI_10010446; scaffold550 WUBlastX DNA_Harbinger 45983 46156 41 + . . scaffold550 GLEAN mRNA 42295 70110 0.723644 + . ID=CGI_10012483; scaffold40134 WUBlastX DNA_Harbinger 27904 28236 32 + . . scaffold40134 GLEAN mRNA 26792 31648 0.922114 - . ID=CGI_10003881; scaffold1247 WUBlastX DNA_MuDR 180915 181172 64 - . . scaffold1247 GLEAN mRNA 173109 184348 0.886383 - . ID=CGI_10008950; scaffold336 WUBlastX LINE_RTE-X 216424 216585 36 + . . scaffold336 GLEAN mRNA 208327 217851 1 - . ID=CGI_10012569; scaffold678 WUBlastX LINE_L2 637625 637822 31 - . . scaffold678 GLEAN mRNA 636648 664664 0.986036 - . ID=CGI_10026369; scaffold569 WUBlastX LTR_DIRS 43269 43505 50 + . . scaffold569 GLEAN mRNA 32554 62247 0.974978 + . ID=CGI_10009494; scaffold86 WUBlastX DNA_Kolobok-Hyd 1352824 1353174 53 - . . scaffold86 GLEAN mRNA 1350663 1354624 0.5119 - . ID=CGI_10028203; scaffold41380 WUBlastX LINE_RTE-BovB 66992 67252 29 - . . scaffold41380 GLEAN mRNA 65148 69310 0.636303 + . ID=CGI_10005041; scaffold43940 WUBlastX LINE_RTE-X 334827 334925 43 - . . scaffold43940 GLEAN mRNA 320005 345257 1 - . ID=CGI_10014162; scaffold664 WUBlastX LINE_RTE-X 503195 503407 95 - . . scaffold664 GLEAN mRNA 503105 503419 0.999344 - . ID=CGI_10021453; scaffold1018 WUBlastX DNA_hAT-Tip100 445238 445474 109 + . . scaffold1018 GLEAN mRNA 435304 447286 0.992449 + . ID=CGI_10019772; scaffold712 WUBlastX DNA_TcMar-Tc1 444688 444933 83 - . . scaffold712 GLEAN mRNA 407397 462275 0.613636 - . ID=CGI_10016489; scaffold41598 WUBlastX DNA_PiggyBac 66446 66586 52 - . . scaffold41598 GLEAN mRNA 59426 74794 0.449575 - . ID=CGI_10005304; C35042 WUBlastX LINE_CR1-L2 12364 12729 58 - . . C35042 GLEAN mRNA 1730 15534 0.391528 + . ID=CGI_10001403; scaffold1686 WUBlastX LINE_L2 59032 59349 57 - . . scaffold1686 GLEAN mRNA 58573 59710 0.792752 - . ID=CGI_10005075; scaffold852 WUBlastX DNA_Kolobok-IS4 52443 52595 20 - . . scaffold852 GLEAN mRNA 46446 54395 0.990384 - . ID=CGI_10012034; scaffold579 WUBlastX DNA_TcMar-Tc1 206870 206935 33 + . . scaffold579 GLEAN mRNA 193436 221323 0.863149 + . ID=CGI_10011264; scaffold351 WUBlastX LINE_Penelope 102582 102638 26 - . . scaffold351 GLEAN mRNA 94305 104490 0.817501 - . ID=CGI_10022591; scaffold1028 WUBlastX LINE_RTE-X 42302 42781 29 + . . scaffold1028 GLEAN mRNA 38359 105235 0.597726 - . ID=CGI_10009718; scaffold695 WUBlastX LINE_CR1 714861 714908 20 + . . scaffold695 GLEAN mRNA 705983 727911 0.988963 - . ID=CGI_10023304; scaffold855 WUBlastX DNA_Maverick 2554 3108 103 + . . scaffold855 GLEAN mRNA 754 11189 0.999983 + . ID=CGI_10001160; scaffold1785 WUBlastX LINE_L2 544441 544878 99 + . . scaffold1785 GLEAN mRNA 522476 550245 0.457905 + . ID=CGI_10024389; scaffold664 WUBlastX LTR_Ngaro 302359 302604 139 - . . scaffold664 GLEAN mRNA 302033 315790 0.67043 + . ID=CGI_10021446; scaffold1518 WUBlastX LTR_DIRS 467930 468136 50 - . . scaffold1518 GLEAN mRNA 454061 469419 0.622487 + . ID=CGI_10017815; scaffold343 WUBlastX DNA_hAT-Blackja 662016 662336 107 + . . scaffold343 GLEAN mRNA 643828 662585 1 - . ID=CGI_10021771; scaffold35994 WUBlastX LTR_Pao 22897 23361 140 - . . scaffold35994 GLEAN mRNA 21382 24601 0.722015 + . ID=CGI_10001675; scaffold40606 WUBlastX LINE_RTE-X 9082 9324 114 - . . scaffold40606 GLEAN mRNA 7541 35661 0.834284 + . ID=CGI_10004278; scaffold191 WUBlastX DNA_IS4EU 575165 575329 118 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold591 WUBlastX DNA_PiggyBac 726237 726464 35 + . . scaffold591 GLEAN mRNA 721166 806574 0.987378 - . ID=CGI_10027581; scaffold454 WUBlastX LINE_CR1-L2 99589 100722 162 - . . scaffold454 GLEAN mRNA 93341 108889 0.996665 - . ID=CGI_10011629; scaffold1173 WUBlastX LINE_Penelope 100172 100672 129 + . . scaffold1173 GLEAN mRNA 87229 104633 0.605033 - . ID=CGI_10005747; scaffold1817 WUBlastX LTR_Gypsy 24666 24767 20 + . . scaffold1817 GLEAN mRNA 9897 44966 0.453567 - . ID=CGI_10005250; scaffold354 WUBlastX LTR_DIRS 48801 49511 134 + . . scaffold354 GLEAN mRNA 46016 92159 0.140194 - . ID=CGI_10025696; scaffold354 WUBlastX LTR_DIRS 49636 51252 773 + . . scaffold354 GLEAN mRNA 46016 92159 0.140194 - . ID=CGI_10025696; scaffold847 WUBlastX LTR_Gypsy 597521 598033 206 - . . scaffold847 GLEAN mRNA 588396 606136 0.840326 - . ID=CGI_10022283; scaffold588 WUBlastX LINE_L1 151151 151471 75 - . . scaffold588 GLEAN mRNA 132834 155339 0.82921 + . ID=CGI_10016211; scaffold1623 WUBlastX RC_Helitron 14528 15409 153 + . . scaffold1623 GLEAN mRNA 2672 21645 0.211469 + . ID=CGI_10002853; scaffold1247 WUBlastX DNA_TcMar-Tc1 113832 114248 142 + . . scaffold1247 GLEAN mRNA 96036 115392 0.95838 - . ID=CGI_10008945; scaffold1301 WUBlastX LTR_Pao 628382 628711 22 - . . scaffold1301 GLEAN mRNA 619345 669752 0.288547 + . ID=CGI_10027735; scaffold257 WUBlastX LTR_Gypsy 1094933 1095085 50 - . . scaffold257 GLEAN mRNA 1093944 1099430 0.999918 - . ID=CGI_10027941; scaffold257 WUBlastX LTR_Gypsy 1095115 1097229 1527 - . . scaffold257 GLEAN mRNA 1093944 1099430 0.999918 - . ID=CGI_10027941; scaffold242 WUBlastX LTR_Pao 78512 79093 397 + . . scaffold242 GLEAN mRNA 75832 84666 0.771995 + . ID=CGI_10007083; scaffold43538 WUBlastX LINE_CR1 155919 155963 27 + . . scaffold43538 GLEAN mRNA 151937 158307 1 - . ID=CGI_10010823; scaffold41898 WUBlastX LTR_Gypsy 98848 99228 243 - . . scaffold41898 GLEAN mRNA 97771 99228 0.999846 - . ID=CGI_10005832; scaffold579 WUBlastX LINE_RTE-BovB 267281 267442 95 + . . scaffold579 GLEAN mRNA 263302 283849 0.988891 + . ID=CGI_10011268; scaffold22 WUBlastX LTR_Pao 1074866 1075303 113 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold237 WUBlastX LINE_RTE-X 590598 590598 202 + . . scaffold237 GLEAN mRNA 590107 590598 0.776648 + . ID=CGI_10021587; scaffold1214 WUBlastX LINE_RTE-X 243275 243658 116 + . . scaffold1214 GLEAN mRNA 241265 253884 0.274712 + . ID=CGI_10015480; scaffold40264 WUBlastX LINE_L2 49718 51625 176 - . . scaffold40264 GLEAN mRNA 10435 67637 0.512371 + . ID=CGI_10004012; scaffold1401 WUBlastX LINE_RTE-X 2960 3214 55 - . . scaffold1401 GLEAN mRNA 431 6619 0.997038 - . ID=CGI_10001278; scaffold867 WUBlastX DNA_Harbinger 284044 285066 247 + . . scaffold867 GLEAN mRNA 272568 288334 0.996494 + . ID=CGI_10026216; scaffold38904 WUBlastX LTR_Ngaro 22264 22503 32 + . . scaffold38904 GLEAN mRNA 21184 27002 0.495502 - . ID=CGI_10003048; scaffold38904 WUBlastX LTR_Ngaro 22506 23189 216 + . . scaffold38904 GLEAN mRNA 21184 27002 0.495502 - . ID=CGI_10003048; scaffold36140 WUBlastX LINE_CR1 8921 9490 211 - . . scaffold36140 GLEAN mRNA 6624 23811 0.998174 + . ID=CGI_10001795; scaffold815 WUBlastX LINE_RTE-X 10635 11315 23 + . . scaffold815 GLEAN mRNA 3623 27508 0.999835 - . ID=CGI_10001932; scaffold502 WUBlastX LINE_L1 77240 78034 29 + . . scaffold502 GLEAN mRNA 66995 88059 0.642831 + . ID=CGI_10024313; scaffold42226 WUBlastX DNA_Kolobok 120356 120592 100 - . . scaffold42226 GLEAN mRNA 107394 126585 0.842903 + . ID=CGI_10006364; scaffold42226 WUBlastX DNA_Kolobok 120758 120952 72 - . . scaffold42226 GLEAN mRNA 107394 126585 0.842903 + . ID=CGI_10006364; scaffold42226 WUBlastX DNA_Kolobok 121087 121302 41 - . . scaffold42226 GLEAN mRNA 107394 126585 0.842903 + . ID=CGI_10006364; scaffold42226 WUBlastX DNA_Kolobok 122100 122381 96 - . . scaffold42226 GLEAN mRNA 107394 126585 0.842903 + . ID=CGI_10006364; scaffold43726 WUBlastX LINE_RTE-X 191418 192074 429 + . . scaffold43726 GLEAN mRNA 189584 195489 0.999572 - . ID=CGI_10012025; scaffold40928 WUBlastX LINE_CR1 40031 40243 119 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold743 WUBlastX LINE_RTE-X 108940 109134 304 + . . scaffold743 GLEAN mRNA 83791 109134 0.449406 + . ID=CGI_10008614; scaffold458 WUBlastX LTR_Ngaro 174196 175155 431 + . . scaffold458 GLEAN mRNA 171659 179488 0.10231 + . ID=CGI_10013591; scaffold458 WUBlastX LTR_Ngaro 177951 178910 431 + . . scaffold458 GLEAN mRNA 171659 179488 0.10231 + . ID=CGI_10013591; scaffold501 WUBlastX LINE_RTE-X 866251 867348 350 + . . scaffold501 GLEAN mRNA 862188 876023 0.966154 + . ID=CGI_10027533; scaffold1352 WUBlastX LINE_RTE-X 401986 402366 154 + . . scaffold1352 GLEAN mRNA 400458 408667 0.333165 + . ID=CGI_10018425; scaffold19 WUBlastX LTR_DIRS 140068 140769 233 - . . scaffold19 GLEAN mRNA 112664 148277 0.596648 - . ID=CGI_10010836; scaffold1009 WUBlastX DNA_hAT 494985 495083 32 + . . scaffold1009 GLEAN mRNA 486872 502575 0.999001 - . ID=CGI_10028738; scaffold85 WUBlastX LTR_Gypsy 354345 354545 31 - . . scaffold85 GLEAN mRNA 332841 357883 0.849566 - . ID=CGI_10020703; scaffold1301 WUBlastX LTR_Pao 625952 626311 36 - . . scaffold1301 GLEAN mRNA 619345 669752 0.288547 + . ID=CGI_10027735; scaffold82 WUBlastX LINE_L1 688941 689228 55 - . . scaffold82 GLEAN mRNA 671230 690151 0.999877 - . ID=CGI_10025267; scaffold1532 WUBlastX LINE_RTE-X 410799 411950 465 - . . scaffold1532 GLEAN mRNA 405806 428910 0.729212 + . ID=CGI_10028250; scaffold42364 WUBlastX DNA_TcMar-Tc1 22971 23945 432 - . . scaffold42364 GLEAN mRNA 5952 23975 0.523615 - . ID=CGI_10006717; scaffold1179 WUBlastX LINE_CR1-L2 42459 43616 326 - . . scaffold1179 GLEAN mRNA 39144 50414 0.726285 + . ID=CGI_10027340; scaffold655 WUBlastX LTR_Gypsy 410008 410964 637 - . . scaffold655 GLEAN mRNA 410008 410964 0.999999 - . ID=CGI_10014963; scaffold1014 WUBlastX LINE_L1 592492 592731 91 - . . scaffold1014 GLEAN mRNA 561207 594372 0.621641 - . ID=CGI_10020275; scaffold1799 WUBlastX LTR_Ngaro 59073 59267 97 - . . scaffold1799 GLEAN mRNA 46929 66946 0.999949 - . ID=CGI_10003631; scaffold1799 WUBlastX LTR_Ngaro 59575 60009 289 - . . scaffold1799 GLEAN mRNA 46929 66946 0.999949 - . ID=CGI_10003631; scaffold481 WUBlastX LTR_Gypsy 1227495 1227722 139 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold370 WUBlastX DNA_PiggyBac 303684 303699 26 - . . scaffold370 GLEAN mRNA 303684 313494 0.791709 + . ID=CGI_10025534; scaffold37622 WUBlastX LINE_L2 26424 26546 59 + . . scaffold37622 GLEAN mRNA 16284 44703 0.980135 - . ID=CGI_10002429; scaffold587 WUBlastX LINE_L2 110704 110871 77 - . . scaffold587 GLEAN mRNA 106168 127861 0.701684 + . ID=CGI_10006892; scaffold43520 WUBlastX LTR_Ngaro 185629 186030 66 + . . scaffold43520 GLEAN mRNA 184106 230161 0.796254 - . ID=CGI_10010721; scaffold1307 WUBlastX LTR_Gypsy 592391 592444 22 + . . scaffold1307 GLEAN mRNA 586550 596673 0.992394 + . ID=CGI_10023769; scaffold1016 WUBlastX DNA_IS4EU 434053 434250 73 + . . scaffold1016 GLEAN mRNA 434053 435120 0.686938 + . ID=CGI_10016898; scaffold599 WUBlastX LINE_L2 479820 480479 33 - . . scaffold599 GLEAN mRNA 478283 491770 0.99915 - . ID=CGI_10021727; scaffold853 WUBlastX LTR_Ngaro 475091 475102 48 - . . scaffold853 GLEAN mRNA 464268 475102 0.615194 - . ID=CGI_10017519; scaffold42948 WUBlastX DNA_TcMar-Marin 195377 195592 51 + . . scaffold42948 GLEAN mRNA 186071 196987 0.150089 + . ID=CGI_10008236; scaffold143 WUBlastX LINE_RTE-X 147363 147521 22 - . . scaffold143 GLEAN mRNA 117664 149411 0.999949 + . ID=CGI_10010012; scaffold1024 WUBlastX DNA_PiggyBac 1079083 1079412 64 - . . scaffold1024 GLEAN mRNA 1078261 1083838 0.826098 - . ID=CGI_10028565; scaffold481 WUBlastX LINE_L2 1229515 1229688 98 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold394 WUBlastX DNA_hAT-hATw 559240 559449 36 + . . scaffold394 GLEAN mRNA 549658 560561 0.811205 + . ID=CGI_10022093; scaffold501 WUBlastX LINE_L1 267968 268228 24 + . . scaffold501 GLEAN mRNA 267968 268585 0.999995 + . ID=CGI_10027511; scaffold1366 WUBlastX LINE_RTE-X 137558 137770 68 - . . scaffold1366 GLEAN mRNA 134919 140492 0.999572 - . ID=CGI_10012293; scaffold1179 WUBlastX DNA_PiggyBac 1334386 1334601 65 - . . scaffold1179 GLEAN mRNA 1333065 1336155 0.976862 - . ID=CGI_10027422; scaffold40182 WUBlastX LINE_RTE-X 19739 19942 49 + . . scaffold40182 GLEAN mRNA 7136 27863 0.492081 + . ID=CGI_10003936; scaffold1589 WUBlastX LTR_Copia 280515 280574 28 - . . scaffold1589 GLEAN mRNA 279757 287553 0.968345 - . ID=CGI_10024110; scaffold1730 WUBlastX LTR_Gypsy-Cigr 196825 196959 97 + . . scaffold1730 GLEAN mRNA 195851 199333 0.999676 + . ID=CGI_10012260; scaffold917 WUBlastX LINE_L1 161916 162362 66 + . . scaffold917 GLEAN mRNA 150992 179733 0.207364 - . ID=CGI_10011084; scaffold76 WUBlastX LINE_RTE-X 227550 227885 65 + . . scaffold76 GLEAN mRNA 221391 229684 0.999675 - . ID=CGI_10009406; scaffold1191 WUBlastX LINE_RTE-X 93695 93928 83 + . . scaffold1191 GLEAN mRNA 88841 97999 0.89115 + . ID=CGI_10005212; scaffold1578 WUBlastX LINE_L2 107358 107519 78 + . . scaffold1578 GLEAN mRNA 107358 107540 0.618108 + . ID=CGI_10008163; scaffold38532 WUBlastX LTR_Ngaro 56562 56717 89 - . . scaffold38532 GLEAN mRNA 48785 56819 0.999998 - . ID=CGI_10002832; scaffold560 WUBlastX LINE_RTE-X 139806 140036 89 - . . scaffold560 GLEAN mRNA 134675 160538 0.941337 + . ID=CGI_10008753; scaffold751 WUBlastX DNA_TcMar-Tc1 155791 156027 27 - . . scaffold751 GLEAN mRNA 154176 165740 0.999947 - . ID=CGI_10017388; scaffold751 WUBlastX DNA_TcMar-Tc1 156119 156199 23 - . . scaffold751 GLEAN mRNA 154176 165740 0.999947 - . ID=CGI_10017388; scaffold588 WUBlastX LINE_L1 151788 152114 97 - . . scaffold588 GLEAN mRNA 132834 155339 0.82921 + . ID=CGI_10016211; scaffold43130 WUBlastX LINE_RTE-X 122237 122569 81 + . . scaffold43130 GLEAN mRNA 99127 140133 0.992485 - . ID=CGI_10008963; scaffold801 WUBlastX LINE_RTE-X 638252 638422 99 + . . scaffold801 GLEAN mRNA 629688 677591 0.460193 - . ID=CGI_10024093; C29438 WUBlastX LINE_RTE-X 2525 2695 109 + . . C29438 GLEAN mRNA 533 5889 1 + . ID=CGI_10000534; scaffold37844 WUBlastX LINE_Penelope 5379 5669 68 - . . scaffold37844 GLEAN mRNA 2684 16247 0.999999 - . ID=CGI_10002508; scaffold1826 WUBlastX LTR_Gypsy 40984 41142 113 + . . scaffold1826 GLEAN mRNA 39665 57424 0.756838 + . ID=CGI_10006241; scaffold40440 WUBlastX LINE_Penelope 54428 54544 32 + . . scaffold40440 GLEAN mRNA 51085 65707 0.320377 - . ID=CGI_10004144; scaffold1459 WUBlastX LTR_Gypsy 105470 105886 44 + . . scaffold1459 GLEAN mRNA 92847 117435 0.999674 - . ID=CGI_10010107; scaffold230 WUBlastX LTR_Ngaro 196599 196892 69 + . . scaffold230 GLEAN mRNA 178498 220276 0.270873 - . ID=CGI_10011252; scaffold1894 WUBlastX LINE_L1-Tx1 40778 40993 54 - . . scaffold1894 GLEAN mRNA 18177 67015 0.499328 - . ID=CGI_10013334; scaffold896 WUBlastX LINE_L1-Tx1 47812 48321 71 + . . scaffold896 GLEAN mRNA 45378 49645 0.962391 - . ID=CGI_10022830; scaffold1518 WUBlastX LINE_L2 286742 287104 712 + . . scaffold1518 GLEAN mRNA 258241 287104 0.241996 + . ID=CGI_10017803; scaffold43036 WUBlastX LTR_Pao 27048 27152 104 - . . scaffold43036 GLEAN mRNA 24277 27152 1 - . ID=CGI_10008493; scaffold43036 WUBlastX LTR_Pao 26859 26960 115 - . . scaffold43036 GLEAN mRNA 24277 27152 1 - . ID=CGI_10008493; scaffold43648 WUBlastX DNA_Kolobok 232783 233010 43 + . . scaffold43648 GLEAN mRNA 231599 237776 0.973881 - . ID=CGI_10011593; scaffold1024 WUBlastX LINE_CR1 71118 72401 1021 + . . scaffold1024 GLEAN mRNA 70811 87216 0.389681 + . ID=CGI_10028519; scaffold1350 WUBlastX LTR_DIRS 469018 469560 356 + . . scaffold1350 GLEAN mRNA 448816 473345 0.450856 - . ID=CGI_10017319; scaffold42530 WUBlastX LINE_L2 46545 47180 153 + . . scaffold42530 GLEAN mRNA 44450 55395 0.966018 + . ID=CGI_10007161; scaffold588 WUBlastX LTR_Gypsy 399981 401558 253 - . . scaffold588 GLEAN mRNA 392510 405723 0.983024 + . ID=CGI_10016225; scaffold481 WUBlastX LTR_Gypsy 1217774 1218256 103 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LTR_Gypsy 1218255 1219388 840 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold43562 WUBlastX LINE_RTE-X 132426 134471 1323 - . . scaffold43562 GLEAN mRNA 120653 134746 0.91935 - . ID=CGI_10011033; scaffold674 WUBlastX LTR_Ngaro 15145 15366 120 + . . scaffold674 GLEAN mRNA 11758 15607 0.993811 + . ID=CGI_10002488; scaffold38976 WUBlastX LTR_Gypsy 7875 9392 1423 - . . scaffold38976 GLEAN mRNA 801 15953 0.854638 + . ID=CGI_10003109; scaffold38976 WUBlastX LTR_Gypsy 9349 9915 257 - . . scaffold38976 GLEAN mRNA 801 15953 0.854638 + . ID=CGI_10003109; scaffold38976 WUBlastX LTR_Gypsy 9927 10343 348 - . . scaffold38976 GLEAN mRNA 801 15953 0.854638 + . ID=CGI_10003109; scaffold1036 WUBlastX DNA_TcMar-Tc1 175088 175396 144 + . . scaffold1036 GLEAN mRNA 165168 179169 0.593142 - . ID=CGI_10019951; scaffold40564 WUBlastX LINE_L1 8889 9605 184 + . . scaffold40564 GLEAN mRNA 6674 28756 0.488599 + . ID=CGI_10004207; scaffold3 WUBlastX LTR_Ngaro 973294 974598 116 - . . scaffold3 GLEAN mRNA 958982 982969 0.663393 + . ID=CGI_10027317; scaffold90 WUBlastX DNA_hAT-Tip100? 397964 398032 45 - . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold90 WUBlastX DNA_hAT-Tip100? 399174 399788 224 - . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold3 WUBlastX LTR_Ngaro 972956 973357 23 - . . scaffold3 GLEAN mRNA 958982 982969 0.663393 + . ID=CGI_10027317; scaffold140 WUBlastX LINE_L1-Tx1 72890 74050 138 + . . scaffold140 GLEAN mRNA 45423 78027 0.362757 - . ID=CGI_10020123; scaffold326 WUBlastX LTR_Gypsy 66602 66639 25 + . . scaffold326 GLEAN mRNA 66602 67012 0.649408 + . ID=CGI_10003297; scaffold39858 WUBlastX DNA_Kolobok 10708 10965 109 - . . scaffold39858 GLEAN mRNA 10188 11366 1 - . ID=CGI_10003659; scaffold39858 WUBlastX DNA_Kolobok 11046 11237 96 - . . scaffold39858 GLEAN mRNA 10188 11366 1 - . ID=CGI_10003659; scaffold39858 WUBlastX DNA_Kolobok 10212 10421 92 - . . scaffold39858 GLEAN mRNA 10188 11366 1 - . ID=CGI_10003659; scaffold550 WUBlastX DNA_Helitron 149470 150264 128 - . . scaffold550 GLEAN mRNA 134556 152020 0.969581 - . ID=CGI_10012490; scaffold1283 WUBlastX LINE_RTE-X 38235 38591 219 + . . scaffold1283 GLEAN mRNA 32464 43957 1 + . ID=CGI_10011783; scaffold1283 WUBlastX LINE_RTE-X 38596 39495 166 + . . scaffold1283 GLEAN mRNA 32464 43957 1 + . ID=CGI_10011783; scaffold581 WUBlastX LINE_L1-Tx1 20086 20187 32 + . . scaffold581 GLEAN mRNA 8702 32094 0.999834 - . ID=CGI_10013733; scaffold1091 WUBlastX LTR_Gypsy 2872 3192 53 - . . scaffold1091 GLEAN mRNA 2872 7633 0.989308 - . ID=CGI_10002833; scaffold292 WUBlastX LTR_Pao 18211 19020 697 - . . scaffold292 GLEAN mRNA 5287 26747 0.497399 + . ID=CGI_10003526; scaffold41568 WUBlastX LTR_Gypsy 89055 90053 129 + . . scaffold41568 GLEAN mRNA 75182 91109 0.978007 + . ID=CGI_10005300; scaffold41858 WUBlastX LINE_RTE-X 110345 111106 147 + . . scaffold41858 GLEAN mRNA 107447 123979 1 + . ID=CGI_10005770; scaffold42804 WUBlastX LTR_Gypsy-Cigr 79734 80054 69 - . . scaffold42804 GLEAN mRNA 77910 84833 0.910125 + . ID=CGI_10007779; scaffold630 WUBlastX LTR_Copia 341047 341160 20 - . . scaffold630 GLEAN mRNA 340806 353631 0.861539 - . ID=CGI_10018332; scaffold90 WUBlastX LTR_Pao 202672 202672 51 - . . scaffold90 GLEAN mRNA 201707 202672 0.999991 - . ID=CGI_10015167; scaffold39804 WUBlastX LINE_L2 54737 54910 61 - . . scaffold39804 GLEAN mRNA 45401 55574 0.999999 - . ID=CGI_10003620; scaffold27654 WUBlastX DNA_Crypton 1047 1442 29 - . . scaffold27654 GLEAN mRNA 1041 1996 0.999376 - . ID=CGI_10000367; scaffold36022 WUBlastX LINE_L2 8979 9419 61 - . . scaffold36022 GLEAN mRNA 8319 9974 0.999661 - . ID=CGI_10001740; scaffold1036 WUBlastX DNA_MuDR 479324 479650 44 - . . scaffold1036 GLEAN mRNA 472347 489883 1 - . ID=CGI_10019970; scaffold113 WUBlastX DNA_MuDR 582119 582379 29 - . . scaffold113 GLEAN mRNA 582017 590807 0.980826 - . ID=CGI_10021294; scaffold40950 WUBlastX LINE_RTE-X 64186 64377 78 + . . scaffold40950 GLEAN mRNA 45067 69137 1 - . ID=CGI_10004590; scaffold35004 WUBlastX LINE_RTE-X 20171 20371 43 - . . scaffold35004 GLEAN mRNA 18894 21385 1 + . ID=CGI_10001394; scaffold42328 WUBlastX LINE_RTE-X 30735 30935 43 - . . scaffold42328 GLEAN mRNA 29569 31949 0.777732 + . ID=CGI_10006549; scaffold43842 WUBlastX LINE_RTE-X 195593 195772 47 + . . scaffold43842 GLEAN mRNA 186219 196229 0.99996 + . ID=CGI_10013104; scaffold1895 WUBlastX LINE_L1-Tx1 22871 23002 68 + . . scaffold1895 GLEAN mRNA 10144 35398 0.383689 - . ID=CGI_10010969; scaffold43932 WUBlastX DNA_TcMar-Tc2 190890 191042 64 + . . scaffold43932 GLEAN mRNA 184217 200506 0.993526 + . ID=CGI_10014122; scaffold603 WUBlastX LINE_L1 16504 16830 31 - . . scaffold603 GLEAN mRNA 13948 26603 0.533291 - . ID=CGI_10009894; scaffold1094 WUBlastX DNA_Kolobok-IS4 638954 639718 68 - . . scaffold1094 GLEAN mRNA 609558 640373 0.531771 - . ID=CGI_10021838; scaffold1024 WUBlastX DNA_TcMar-Tc1 262743 263018 59 - . . scaffold1024 GLEAN mRNA 251261 271480 0.999675 - . ID=CGI_10028529; scaffold41344 WUBlastX LINE_RTE-X 73369 73482 52 + . . scaffold41344 GLEAN mRNA 53161 73482 1 + . ID=CGI_10004980; scaffold1393 WUBlastX DNA_Sola 10659 10943 61 + . . scaffold1393 GLEAN mRNA 1156 19168 0.544851 - . ID=CGI_10004890; scaffold1554 WUBlastX LINE_CR1-L2 84525 84647 41 - . . scaffold1554 GLEAN mRNA 84456 84665 0.999372 - . ID=CGI_10017358; scaffold617 WUBlastX LINE_CR1 277762 278016 87 - . . scaffold617 GLEAN mRNA 268182 293713 0.999943 + . ID=CGI_10012737; scaffold1179 WUBlastX DNA_PiggyBac 1337401 1337733 38 - . . scaffold1179 GLEAN mRNA 1337347 1343683 0.999954 - . ID=CGI_10027423; scaffold43396 WUBlastX LTR_Ngaro 237754 237834 56 - . . scaffold43396 GLEAN mRNA 229822 241717 0.993815 + . ID=CGI_10010156; scaffold867 WUBlastX LINE_L1-Tx1 254377 254598 52 + . . scaffold867 GLEAN mRNA 253182 264678 0.938203 - . ID=CGI_10026215; scaffold260 WUBlastX DNA_Crypton 48994 49308 105 - . . scaffold260 GLEAN mRNA 48314 65715 0.848653 - . ID=CGI_10003729; scaffold632 WUBlastX LINE_L1-Tx1 485814 486158 70 + . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold1138 WUBlastX LTR_Gypsy 176098 176454 84 + . . scaffold1138 GLEAN mRNA 174466 179423 0.789389 + . ID=CGI_10015372; scaffold1490 WUBlastX DNA_NOF 207392 207880 104 + . . scaffold1490 GLEAN mRNA 170500 224827 0.659104 + . ID=CGI_10014912; scaffold1018 WUBlastX LTR_Ngaro 442052 442462 75 + . . scaffold1018 GLEAN mRNA 435304 447286 0.992449 + . ID=CGI_10019772; scaffold1018 WUBlastX LTR_Ngaro 442052 442462 75 + . . scaffold1018 GLEAN mRNA 435432 442583 0.542495 - . ID=CGI_10019773; scaffold780 WUBlastX LTR_Ngaro 966864 966968 20 + . . scaffold780 GLEAN mRNA 959842 972028 0.999936 - . ID=CGI_10024749; C30694 WUBlastX LTR_Copia 6009 6080 24 - . . C30694 GLEAN mRNA 5782 6153 1 - . ID=CGI_10000657; scaffold605 WUBlastX RC_Helitron 43551 44192 27 + . . scaffold605 GLEAN mRNA 41127 44213 1 + . ID=CGI_10004633; scaffold39196 WUBlastX RC_Helitron 37939 38328 137 - . . scaffold39196 GLEAN mRNA 18014 59804 0.5589 - . ID=CGI_10003215; scaffold1213 WUBlastX DNA_TcMar-Tc1 250202 250678 117 - . . scaffold1213 GLEAN mRNA 226891 261241 0.989794 + . ID=CGI_10027441; scaffold94 WUBlastX LTR_ERV1 64722 65063 64 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold1188 WUBlastX LTR_Ngaro 288143 288358 112 + . . scaffold1188 GLEAN mRNA 281129 295835 0.924496 + . ID=CGI_10025467; scaffold1741 WUBlastX DNA_Kolobok 812731 812898 84 + . . scaffold1741 GLEAN mRNA 804296 818884 1 - . ID=CGI_10024052; scaffold1221 WUBlastX LINE_L1 390034 390657 30 + . . scaffold1221 GLEAN mRNA 352551 403939 0.753368 - . ID=CGI_10019745; scaffold37006 WUBlastX LINE_L2 31101 31427 54 - . . scaffold37006 GLEAN mRNA 18201 34112 0.554997 + . ID=CGI_10002223; scaffold1719 WUBlastX LTR_Gypsy 189943 190461 169 + . . scaffold1719 GLEAN mRNA 177172 199114 0.99732 - . ID=CGI_10014281; scaffold43660 WUBlastX LTR_Ngaro 245036 245893 175 + . . scaffold43660 GLEAN mRNA 243562 254433 0.99966 - . ID=CGI_10011671; scaffold38058 WUBlastX LTR_Gypsy 4718 4870 79 - . . scaffold38058 GLEAN mRNA 3486 8173 0.999159 - . ID=CGI_10002595; scaffold980 WUBlastX LINE_I 80376 80426 22 - . . scaffold980 GLEAN mRNA 43953 80997 0.883179 - . ID=CGI_10019204; scaffold1634 WUBlastX LTR_Ngaro 85112 85216 59 - . . scaffold1634 GLEAN mRNA 82464 85496 0.992943 + . ID=CGI_10005152; scaffold808 WUBlastX LTR_DIRS 170682 171341 284 + . . scaffold808 GLEAN mRNA 163011 189170 0.494982 - . ID=CGI_10019018; scaffold808 WUBlastX LTR_DIRS 171279 173324 1263 + . . scaffold808 GLEAN mRNA 163011 189170 0.494982 - . ID=CGI_10019018; scaffold142 WUBlastX LINE_CR1 235848 236693 504 + . . scaffold142 GLEAN mRNA 226750 254431 0.969071 + . ID=CGI_10026760; scaffold226 WUBlastX DNA_hAT 781498 781671 49 + . . scaffold226 GLEAN mRNA 780022 794397 0.995567 + . ID=CGI_10025375; scaffold496 WUBlastX LTR_Ngaro 286253 286963 173 - . . scaffold496 GLEAN mRNA 284554 289142 0.934292 + . ID=CGI_10022451; scaffold1214 WUBlastX LINE_RTE-X 244713 244787 27 + . . scaffold1214 GLEAN mRNA 241265 253884 0.274712 + . ID=CGI_10015480; scaffold298 WUBlastX DNA_Maverick 13616 16006 1306 - . . scaffold298 GLEAN mRNA 12121 16223 1 - . ID=CGI_10018816; scaffold168 WUBlastX LINE_Jockey 586651 586752 40 - . . scaffold168 GLEAN mRNA 580127 599947 0.430988 + . ID=CGI_10025600; scaffold1800 WUBlastX LTR_Gypsy 312187 313521 894 + . . scaffold1800 GLEAN mRNA 309587 323793 0.999996 + . ID=CGI_10016406; scaffold40208 WUBlastX RC_Helitron 34978 35715 275 + . . scaffold40208 GLEAN mRNA 30839 69631 0.999064 + . ID=CGI_10003954; scaffold40290 WUBlastX LINE_RTE-X 8485 8538 28 - . . scaffold40290 GLEAN mRNA 1168 10080 1 + . ID=CGI_10004018; scaffold544 WUBlastX LTR_DIRS 565423 565758 111 + . . scaffold544 GLEAN mRNA 559869 574687 0.998045 - . ID=CGI_10022574; scaffold425 WUBlastX DNA_IS4EU 128056 128610 136 - . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold1546 WUBlastX DNA_Kolobok 183719 184012 115 - . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold630 WUBlastX LINE_L1-Tx1 235356 236330 188 - . . scaffold630 GLEAN mRNA 233090 241701 0.61505 + . ID=CGI_10018330; scaffold630 WUBlastX LINE_L1-Tx1 235356 236330 188 - . . scaffold630 GLEAN mRNA 227950 240900 0.999747 - . ID=CGI_10018329; scaffold365 WUBlastX DNA_Kolobok 292970 293254 150 + . . scaffold365 GLEAN mRNA 290837 296028 1 + . ID=CGI_10022726; scaffold365 WUBlastX DNA_Kolobok 294128 294349 67 + . . scaffold365 GLEAN mRNA 290837 296028 1 + . ID=CGI_10022726; scaffold365 WUBlastX DNA_Kolobok 295069 295311 103 + . . scaffold365 GLEAN mRNA 290837 296028 1 + . ID=CGI_10022726; scaffold1546 WUBlastX DNA_Kolobok 183219 183359 49 - . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold40134 WUBlastX DNA_Harbinger 28069 28320 106 + . . scaffold40134 GLEAN mRNA 26792 31648 0.922114 - . ID=CGI_10003881; scaffold40134 WUBlastX DNA_Harbinger 29011 29136 116 + . . scaffold40134 GLEAN mRNA 26792 31648 0.922114 - . ID=CGI_10003881; scaffold40134 WUBlastX DNA_Harbinger 29576 29746 123 + . . scaffold40134 GLEAN mRNA 26792 31648 0.922114 - . ID=CGI_10003881; scaffold40134 WUBlastX DNA_Harbinger 29955 30140 31 + . . scaffold40134 GLEAN mRNA 26792 31648 0.922114 - . ID=CGI_10003881; scaffold853 WUBlastX LTR_Gypsy 454472 454576 26 - . . scaffold853 GLEAN mRNA 448693 455013 0.999949 - . ID=CGI_10017517; scaffold210 WUBlastX DNA_En-Spm 261371 263122 401 + . . scaffold210 GLEAN mRNA 246900 267736 0.958099 - . ID=CGI_10015891; scaffold210 WUBlastX DNA_En-Spm 261371 263122 401 + . . scaffold210 GLEAN mRNA 249471 268338 0.16485 + . ID=CGI_10015893; scaffold756 WUBlastX LINE_L2 423314 423811 36 - . . scaffold756 GLEAN mRNA 412445 424957 0.468321 - . ID=CGI_10016466; scaffold43 WUBlastX DNA_TcMar-Tc1 412639 413640 439 + . . scaffold43 GLEAN mRNA 380222 414471 0.256408 - . ID=CGI_10021355; scaffold165 WUBlastX LINE_L1-Tx1 305281 306822 539 - . . scaffold165 GLEAN mRNA 293161 307887 0.249814 - . ID=CGI_10015330; scaffold425 WUBlastX DNA_IS4EU 138124 139272 728 - . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold1228 WUBlastX LINE_CR1-L2 474911 475132 56 - . . scaffold1228 GLEAN mRNA 466655 478477 0.528865 - . ID=CGI_10017006; scaffold1021 WUBlastX LINE_CR1 451856 452254 51 + . . scaffold1021 GLEAN mRNA 448242 473584 0.324995 - . ID=CGI_10022500; scaffold102 WUBlastX LTR_Pao 714623 714823 72 + . . scaffold102 GLEAN mRNA 701339 715746 0.984575 + . ID=CGI_10028447; scaffold392 WUBlastX LTR_Gypsy 37975 38286 22 - . . scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; scaffold395 WUBlastX LTR_ERVK 172147 172257 58 + . . scaffold395 GLEAN mRNA 166343 179904 0.937847 + . ID=CGI_10013977; scaffold756 WUBlastX DNA_Kolobok-IS4 343020 343568 67 - . . scaffold756 GLEAN mRNA 341736 353437 0.789635 - . ID=CGI_10016464; scaffold1476 WUBlastX LINE_L2 170987 171127 44 + . . scaffold1476 GLEAN mRNA 169615 179488 0.862141 + . ID=CGI_10009826; scaffold549 WUBlastX LINE_RTE-X 8416 8565 26 - . . scaffold549 GLEAN mRNA 463 9456 0.999993 + . ID=CGI_10004100; scaffold955 WUBlastX DNA_Maverick 107387 107698 37 + . . scaffold955 GLEAN mRNA 102883 129964 0.99714 + . ID=CGI_10009853; scaffold809 WUBlastX LINE_RTE-X 102954 103313 60 + . . scaffold809 GLEAN mRNA 102798 115167 0.991748 + . ID=CGI_10006490; scaffold1301 WUBlastX LINE_RTE-X 1244766 1244945 60 + . . scaffold1301 GLEAN mRNA 1240763 1263950 0.99974 - . ID=CGI_10027768; scaffold138 WUBlastX LINE_L1-Tx1 29658 29897 22 - . . scaffold138 GLEAN mRNA 800 34081 0.879441 + . ID=CGI_10008423; scaffold1244 WUBlastX LINE_L1-Tx1 99486 99644 49 + . . scaffold1244 GLEAN mRNA 89223 101617 0.299139 + . ID=CGI_10020820; scaffold317 WUBlastX DNA_IS4EU 9332 9586 50 + . . scaffold317 GLEAN mRNA 7090 24632 0.990181 + . ID=CGI_10019337; scaffold43920 WUBlastX DNA_TcMar-Tc1 261046 261288 36 + . . scaffold43920 GLEAN mRNA 253407 262803 0.999991 + . ID=CGI_10013995; scaffold1564 WUBlastX DNA_hAT-Ac 108129 108248 45 - . . scaffold1564 GLEAN mRNA 80148 112523 0.650997 - . ID=CGI_10005199; scaffold102 WUBlastX DNA_hAT-Ac 1538379 1538609 81 - . . scaffold102 GLEAN mRNA 1532525 1541174 0.3501 - . ID=CGI_10028505; scaffold578 WUBlastX DNA_P 26294 26563 95 - . . scaffold578 GLEAN mRNA 19761 26602 0.244564 - . ID=CGI_10015109; scaffold544 WUBlastX LINE_RTE-X 38249 38425 87 - . . scaffold544 GLEAN mRNA 36952 44048 1 + . ID=CGI_10022544; scaffold1191 WUBlastX LINE_RTE-X 93749 93898 98 + . . scaffold1191 GLEAN mRNA 88841 97999 0.89115 + . ID=CGI_10005212; scaffold1698 WUBlastX DNA_Sola 509685 509828 68 + . . scaffold1698 GLEAN mRNA 503808 514720 0.638313 + . ID=CGI_10019389; scaffold43272 WUBlastX DNA_Kolobok 115626 115754 24 - . . scaffold43272 GLEAN mRNA 115202 130908 0.999617 - . ID=CGI_10009669; scaffold132 WUBlastX LTR_Pao 102877 103479 21 - . . scaffold132 GLEAN mRNA 102412 105318 0.999415 - . ID=CGI_10004713; scaffold381 WUBlastX LINE_L2 165715 166212 67 + . . scaffold381 GLEAN mRNA 121685 178510 0.998567 - . ID=CGI_10017555; scaffold252 WUBlastX LINE_L1-Tx1 194729 195025 62 + . . scaffold252 GLEAN mRNA 193535 212637 0.650781 - . ID=CGI_10010768; scaffold1179 WUBlastX LTR_Gypsy 910463 911074 73 - . . scaffold1179 GLEAN mRNA 910112 912193 0.727725 - . ID=CGI_10027392; scaffold1715 WUBlastX LINE_L2 568635 569243 61 + . . scaffold1715 GLEAN mRNA 550177 572188 0.407691 + . ID=CGI_10019686; scaffold783 WUBlastX LINE_RTE-X 7193 7525 94 - . . scaffold783 GLEAN mRNA 2790 33865 0.358594 + . ID=CGI_10011675; scaffold1759 WUBlastX LTR_Gypsy 102996 103109 31 + . . scaffold1759 GLEAN mRNA 83905 106418 0.889634 + . ID=CGI_10010906; scaffold43130 WUBlastX LINE_RTE-X 122354 122599 90 + . . scaffold43130 GLEAN mRNA 99127 140133 0.992485 - . ID=CGI_10008963; scaffold1884 WUBlastX LTR_Gypsy 20896 21189 49 - . . scaffold1884 GLEAN mRNA 17991 22167 1 - . ID=CGI_10012006; scaffold39804 WUBlastX LINE_Jockey 53881 54027 34 - . . scaffold39804 GLEAN mRNA 45401 55574 0.999999 - . ID=CGI_10003620; scaffold1659 WUBlastX DNA_Harbinger 6904 7071 103 + . . scaffold1659 GLEAN mRNA 4365 18372 0.650917 + . ID=CGI_10001326; scaffold296 WUBlastX DNA_hAT-Ac 56734 56901 89 - . . scaffold296 GLEAN mRNA 44577 61658 0.928323 - . ID=CGI_10011690; scaffold296 WUBlastX DNA_hAT-Ac 56909 57283 48 - . . scaffold296 GLEAN mRNA 44577 61658 0.928323 - . ID=CGI_10011690; scaffold41754 WUBlastX LINE_RTE-X 88595 88810 29 + . . scaffold41754 GLEAN mRNA 79569 95321 0.84848 - . ID=CGI_10005558; scaffold753 WUBlastX LINE_CR1-L2 53699 54055 81 + . . scaffold753 GLEAN mRNA 36571 68340 0.958809 + . ID=CGI_10014195; scaffold1800 WUBlastX LINE_CR1 262527 262958 140 - . . scaffold1800 GLEAN mRNA 251153 263258 0.999949 - . ID=CGI_10016404; scaffold366 WUBlastX DNA_Harbinger 119188 119361 92 - . . scaffold366 GLEAN mRNA 106879 123133 0.490969 + . ID=CGI_10007776; scaffold1244 WUBlastX LTR_Gypsy 121992 122834 46 - . . scaffold1244 GLEAN mRNA 121009 134472 0.646055 + . ID=CGI_10020823; scaffold631 WUBlastX LINE_RTE-X 314147 314899 70 - . . scaffold631 GLEAN mRNA 311038 316999 0.99846 - . ID=CGI_10014187; scaffold44098 WUBlastX DNA_hAT 166700 167104 194 + . . scaffold44098 GLEAN mRNA 163319 167512 1 + . ID=CGI_10017705; scaffold695 WUBlastX LINE_L1-Tx1 89331 89879 87 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold789 WUBlastX LINE_CR1 451687 452877 645 + . . scaffold789 GLEAN mRNA 449746 456527 1 + . ID=CGI_10017205; scaffold43708 WUBlastX LINE_L2 239241 239300 21 - . . scaffold43708 GLEAN mRNA 223509 253864 0.998643 + . ID=CGI_10011974; scaffold204 WUBlastX DNA_Crypton 561247 561351 22 + . . scaffold204 GLEAN mRNA 555644 562519 0.999351 + . ID=CGI_10026117; scaffold204 WUBlastX DNA_Crypton 561539 562402 153 + . . scaffold204 GLEAN mRNA 555644 562519 0.999351 + . ID=CGI_10026117; scaffold39268 WUBlastX DNA_MuDR 63437 63634 97 + . . scaffold39268 GLEAN mRNA 61831 68309 0.898511 + . ID=CGI_10003276; scaffold1301 WUBlastX LTR_Pao 627923 628651 250 - . . scaffold1301 GLEAN mRNA 619345 669752 0.288547 + . ID=CGI_10027735; scaffold1599 WUBlastX LTR_Gypsy-Cigr 676605 677252 133 - . . scaffold1599 GLEAN mRNA 676136 688286 0.501311 - . ID=CGI_10027155; scaffold286 WUBlastX LTR_Pao 288283 288570 283 - . . scaffold286 GLEAN mRNA 282191 289004 0.700364 - . ID=CGI_10015966; scaffold616 WUBlastX LINE_L1-Tx1 128140 128868 81 + . . scaffold616 GLEAN mRNA 126038 136791 1 + . ID=CGI_10015389; scaffold1588 WUBlastX LINE_RTE-X 71969 72430 230 + . . scaffold1588 GLEAN mRNA 56027 117187 0.840099 - . ID=CGI_10014772; scaffold1858 WUBlastX LINE_L1-Tx1 121917 122141 86 - . . scaffold1858 GLEAN mRNA 114362 126826 0.999351 - . ID=CGI_10010447; scaffold1343 WUBlastX DNA_Maverick 100638 100958 99 + . . scaffold1343 GLEAN mRNA 94192 115140 0.999675 + . ID=CGI_10005048; scaffold368 WUBlastX LTR_Gypsy 489963 490874 780 - . . scaffold368 GLEAN mRNA 456734 493375 0.348019 + . ID=CGI_10018714; scaffold1350 WUBlastX LINE_RTE-X 396908 397780 125 - . . scaffold1350 GLEAN mRNA 393414 411683 0.728523 + . ID=CGI_10017317; scaffold128 WUBlastX LINE_L2 652220 653419 213 + . . scaffold128 GLEAN mRNA 640571 661683 0.836156 - . ID=CGI_10021536; scaffold557 WUBlastX LINE_L1 401779 402081 39 + . . scaffold557 GLEAN mRNA 401528 413927 0.99928 + . ID=CGI_10017980; scaffold394 WUBlastX LTR_DIRS 436776 437234 337 + . . scaffold394 GLEAN mRNA 435520 450975 0.532272 + . ID=CGI_10022085; scaffold64 WUBlastX DNA_Harbinger 124610 125065 301 + . . scaffold64 GLEAN mRNA 118246 132595 0.997548 - . ID=CGI_10005753; scaffold43708 WUBlastX DNA_Sola 81460 82308 318 + . . scaffold43708 GLEAN mRNA 71613 92556 0.999995 + . ID=CGI_10011967; scaffold625 WUBlastX LINE_Jockey 601375 602718 208 - . . scaffold625 GLEAN mRNA 587493 614849 0.872449 - . ID=CGI_10023425; scaffold625 WUBlastX LINE_Jockey 601375 602718 208 - . . scaffold625 GLEAN mRNA 593175 626759 0.878872 + . ID=CGI_10023426; scaffold38272 WUBlastX LINE_L1-Tx1 37974 38510 119 + . . scaffold38272 GLEAN mRNA 12040 52169 0.605388 + . ID=CGI_10002702; scaffold38272 WUBlastX LINE_L1-Tx1 38465 38749 98 + . . scaffold38272 GLEAN mRNA 12040 52169 0.605388 + . ID=CGI_10002702; scaffold409 WUBlastX DNA_TcMar-Marin 60615 60902 191 + . . scaffold409 GLEAN mRNA 51142 66968 0.990811 + . ID=CGI_10004317; scaffold1228 WUBlastX LINE_RTE-X 477041 477736 165 - . . scaffold1228 GLEAN mRNA 466655 478477 0.528865 - . ID=CGI_10017006; scaffold334 WUBlastX DNA_hAT 106504 106701 110 - . . scaffold334 GLEAN mRNA 104300 112166 0.460378 - . ID=CGI_10025911; scaffold632 WUBlastX LINE_L2 509467 510576 215 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold43008 WUBlastX LINE_L1-Tx1 84238 84402 24 - . . scaffold43008 GLEAN mRNA 78684 87806 0.543465 - . ID=CGI_10008462; scaffold189 WUBlastX LTR_Gypsy 192625 192759 35 + . . scaffold189 GLEAN mRNA 162558 220166 0.999165 - . ID=CGI_10018675; scaffold257 WUBlastX LTR_Gypsy 1094420 1094485 21 - . . scaffold257 GLEAN mRNA 1093944 1099430 0.999918 - . ID=CGI_10027941; scaffold43562 WUBlastX LINE_RTE-X 132303 132968 103 - . . scaffold43562 GLEAN mRNA 120653 134746 0.91935 - . ID=CGI_10011033; scaffold1715 WUBlastX LINE_Penelope 326983 327963 408 + . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold456 WUBlastX LTR_Gypsy 142031 142684 605 + . . scaffold456 GLEAN mRNA 102025 155096 0.577611 + . ID=CGI_10006863; scaffold33082 WUBlastX LINE_RTE-X 7447 7728 162 - . . scaffold33082 GLEAN mRNA 1046 12947 0.584166 + . ID=CGI_10000988; scaffold6 WUBlastX LINE_L1-Tx1 186953 187312 189 + . . scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; scaffold433 WUBlastX LTR_Pao 1202520 1202759 38 - . . scaffold433 GLEAN mRNA 1202502 1202765 0.999995 - . ID=CGI_10027118; scaffold492 WUBlastX LINE_L2 884502 884735 44 - . . scaffold492 GLEAN mRNA 881318 888477 0.999998 + . ID=CGI_10024872; scaffold163 WUBlastX LTR_Gypsy 477755 478108 36 + . . scaffold163 GLEAN mRNA 440738 483510 0.311673 + . ID=CGI_10018629; scaffold934 WUBlastX RC_Helitron 271640 271801 71 + . . scaffold934 GLEAN mRNA 262254 282098 1 - . ID=CGI_10015446; scaffold983 WUBlastX DNA_IS4EU 247648 247824 38 + . . scaffold983 GLEAN mRNA 244830 248843 1 - . ID=CGI_10014030; scaffold143 WUBlastX LTR_Gypsy 79955 80164 53 - . . scaffold143 GLEAN mRNA 79775 80164 0.986676 - . ID=CGI_10010008; scaffold143 WUBlastX LTR_Gypsy 80214 80392 53 - . . scaffold143 GLEAN mRNA 80214 80516 0.776794 - . ID=CGI_10010009; scaffold1382 WUBlastX DNA_Kolobok 233324 233710 35 - . . scaffold1382 GLEAN mRNA 229926 239669 0.88642 - . ID=CGI_10011181; scaffold425 WUBlastX LINE_L1 515134 515391 32 - . . scaffold425 GLEAN mRNA 510364 519174 0.533682 - . ID=CGI_10025986; scaffold1097 WUBlastX LINE_L1 417022 417900 36 - . . scaffold1097 GLEAN mRNA 400759 423931 0.739463 - . ID=CGI_10024529; scaffold1377 WUBlastX LINE_L1 106879 107109 36 + . . scaffold1377 GLEAN mRNA 106879 107493 0.962665 + . ID=CGI_10008620; scaffold143 WUBlastX LINE_L1 192032 192910 36 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold1195 WUBlastX LINE_L1 290513 290848 76 - . . scaffold1195 GLEAN mRNA 290174 296026 0.541928 - . ID=CGI_10012102; scaffold36808 WUBlastX LTR_ERV1 1481 1654 23 + . . scaffold36808 GLEAN mRNA 630 10745 0.703847 - . ID=CGI_10002145; scaffold1144 WUBlastX LTR_ERV1 78922 79006 23 - . . scaffold1144 GLEAN mRNA 78922 87445 0.757486 - . ID=CGI_10013959; scaffold817 WUBlastX DNA_MuDR 47596 47766 54 - . . scaffold817 GLEAN mRNA 47004 50153 0.999225 - . ID=CGI_10008654; scaffold817 WUBlastX DNA_MuDR 47886 48044 54 - . . scaffold817 GLEAN mRNA 47004 50153 0.999225 - . ID=CGI_10008654; scaffold39758 WUBlastX LINE_L1 60507 60794 29 - . . scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold39804 WUBlastX LINE_RTE-BovB 52207 52539 64 - . . scaffold39804 GLEAN mRNA 45401 55574 0.999999 - . ID=CGI_10003620; scaffold396 WUBlastX LINE_RTE-BovB 204437 204826 36 + . . scaffold396 GLEAN mRNA 196799 208805 0.948886 - . ID=CGI_10018103; scaffold422 WUBlastX LINE_RTE-X 189745 189939 50 - . . scaffold422 GLEAN mRNA 175950 190221 0.980281 + . ID=CGI_10018798; scaffold603 WUBlastX LTR_DIRS 161275 161379 60 + . . scaffold603 GLEAN mRNA 158326 164604 1 - . ID=CGI_10009905; scaffold145 WUBlastX DNA_TcMar-Tc1 422336 422539 31 + . . scaffold145 GLEAN mRNA 417763 440555 0.648525 - . ID=CGI_10026557; scaffold33036 WUBlastX DNA_TcMar-Marin 11582 11676 44 + . . scaffold33036 GLEAN mRNA 1876 11676 0.76238 + . ID=CGI_10000985; scaffold1454 WUBlastX DNA_TcMar-Tc1 8740 9048 39 - . . scaffold1454 GLEAN mRNA 4447 15298 0.999999 - . ID=CGI_10004310; scaffold40076 WUBlastX LTR_Gypsy 62408 62479 30 + . . scaffold40076 GLEAN mRNA 50026 69256 0.72657 + . ID=CGI_10003787; scaffold733 WUBlastX LINE_Penelope 513170 513403 32 - . . scaffold733 GLEAN mRNA 408619 548638 0.684241 + . ID=CGI_10025876; scaffold1097 WUBlastX LINE_L1-Tx1 232022 232330 24 - . . scaffold1097 GLEAN mRNA 224191 235119 0.686153 - . ID=CGI_10024512; scaffold714 WUBlastX DNA_TcMar-Tc1 391465 391803 37 + . . scaffold714 GLEAN mRNA 380562 399951 0.999675 - . ID=CGI_10016647; scaffold1132 WUBlastX LINE_L1-Tx1 421271 421528 82 + . . scaffold1132 GLEAN mRNA 413110 426704 0.743295 - . ID=CGI_10023318; scaffold35446 WUBlastX LTR_Gypsy 18267 18758 97 - . . scaffold35446 GLEAN mRNA 11417 21109 0.682042 + . ID=CGI_10001510; scaffold802 WUBlastX LINE_L1-Tx1 141255 141602 92 + . . scaffold802 GLEAN mRNA 137512 196873 0.499283 - . ID=CGI_10015727; scaffold1172 WUBlastX DNA_Kolobok 134147 134389 89 + . . scaffold1172 GLEAN mRNA 130831 145007 0.99998 + . ID=CGI_10006909; scaffold664 WUBlastX DNA_TcMar-Tc1 393850 394212 83 - . . scaffold664 GLEAN mRNA 373118 396523 0.330346 - . ID=CGI_10021447; scaffold156 WUBlastX LTR_Gypsy 25322 25495 44 + . . scaffold156 GLEAN mRNA 14763 25823 0.782343 + . ID=CGI_10026471; scaffold290 WUBlastX LINE_RTE-X 184643 185269 44 + . . scaffold290 GLEAN mRNA 184166 208505 0.688957 - . ID=CGI_10018539; scaffold1518 WUBlastX LTR_DIRS 75961 76206 129 - . . scaffold1518 GLEAN mRNA 56557 76841 0.557715 + . ID=CGI_10017788; scaffold1377 WUBlastX LTR_Gypsy 149001 149828 232 + . . scaffold1377 GLEAN mRNA 119143 150442 0.64366 + . ID=CGI_10008621; scaffold146 WUBlastX LINE_L2 16040 16423 97 + . . scaffold146 GLEAN mRNA 11178 24512 0.999234 + . ID=CGI_10024878; scaffold485 WUBlastX DNA_IS4EU 825441 825587 52 + . . scaffold485 GLEAN mRNA 823477 836722 0.499894 - . ID=CGI_10024196; scaffold485 WUBlastX DNA_IS4EU 826121 826444 118 + . . scaffold485 GLEAN mRNA 823477 836722 0.499894 - . ID=CGI_10024196; scaffold39758 WUBlastX DNA_Kolobok 22237 22599 122 + . . scaffold39758 GLEAN mRNA 21995 23195 0.741708 + . ID=CGI_10003537; scaffold1558 WUBlastX LINE_L1 41102 41233 59 - . . scaffold1558 GLEAN mRNA 34398 73907 0.517269 - . ID=CGI_10004094; scaffold42788 WUBlastX LINE_L1-Tx1 106343 106813 102 + . . scaffold42788 GLEAN mRNA 99407 151977 0.339426 + . ID=CGI_10007755; scaffold1634 WUBlastX LTR_Ngaro 84747 85079 155 - . . scaffold1634 GLEAN mRNA 82464 85496 0.992943 + . ID=CGI_10005152; scaffold1493 WUBlastX DNA_Harbinger 92973 93449 153 + . . scaffold1493 GLEAN mRNA 68626 94456 0.99155 + . ID=CGI_10006742; scaffold1749 WUBlastX LINE_RTE-X 173919 174215 81 - . . scaffold1749 GLEAN mRNA 168130 177487 0.428785 + . ID=CGI_10008260; scaffold1785 WUBlastX LINE_CR1-L2 544420 544806 139 + . . scaffold1785 GLEAN mRNA 522476 550245 0.457905 + . ID=CGI_10024389; scaffold1755 WUBlastX LINE_Penelope 30963 31214 32 - . . scaffold1755 GLEAN mRNA 30793 36083 1 + . ID=CGI_10002648; scaffold1755 WUBlastX LINE_Penelope 32274 32687 124 - . . scaffold1755 GLEAN mRNA 30793 36083 1 + . ID=CGI_10002648; scaffold61 WUBlastX DNA_Academ 165152 165775 381 - . . scaffold61 GLEAN mRNA 164819 186758 0.205101 - . ID=CGI_10016346; scaffold61 WUBlastX DNA_Academ 165771 166871 554 - . . scaffold61 GLEAN mRNA 164819 186758 0.205101 - . ID=CGI_10016346; scaffold911 WUBlastX LTR_Gypsy 94523 94945 81 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold39900 WUBlastX DNA_Maverick 70836 71288 110 - . . scaffold39900 GLEAN mRNA 63800 72994 0.885101 + . ID=CGI_10003685; scaffold41898 WUBlastX LTR_Gypsy 98395 98646 23 - . . scaffold41898 GLEAN mRNA 97771 99228 0.999846 - . ID=CGI_10005832; scaffold204 WUBlastX LINE_L1-Tx1 821346 821411 27 - . . scaffold204 GLEAN mRNA 815967 826283 0.552692 + . ID=CGI_10026134; scaffold204 WUBlastX LINE_L1-Tx1 821427 821726 26 - . . scaffold204 GLEAN mRNA 815967 826283 0.552692 + . ID=CGI_10026134; scaffold204 WUBlastX LINE_L1-Tx1 821955 822113 23 - . . scaffold204 GLEAN mRNA 815967 826283 0.552692 + . ID=CGI_10026134; scaffold204 WUBlastX LINE_L1-Tx1 822109 822399 69 - . . scaffold204 GLEAN mRNA 815967 826283 0.552692 + . ID=CGI_10026134; scaffold905 WUBlastX LINE_L1-Tx1 3570 3725 31 + . . scaffold905 GLEAN mRNA 3174 14725 0.840832 + . ID=CGI_10004338; scaffold143 WUBlastX LTR_Gypsy 19610 19759 66 - . . scaffold143 GLEAN mRNA 16958 23785 0.985197 + . ID=CGI_10010006; scaffold1551 WUBlastX LTR_Ngaro 72864 73511 199 + . . scaffold1551 GLEAN mRNA 48041 86336 0.263167 + . ID=CGI_10011471; scaffold658 WUBlastX LINE_RTE-X 439955 440515 208 - . . scaffold658 GLEAN mRNA 439916 440515 1 - . ID=CGI_10018975; scaffold41834 WUBlastX DNA_P 49990 51777 158 - . . scaffold41834 GLEAN mRNA 48075 59157 0.346565 + . ID=CGI_10005704; scaffold42866 WUBlastX LTR_Pao 5100 5678 286 - . . scaffold42866 GLEAN mRNA 4204 26490 0.99967 + . ID=CGI_10007989; scaffold1583 WUBlastX LINE_RTE-X 330696 331175 86 + . . scaffold1583 GLEAN mRNA 329253 340870 0.998703 - . ID=CGI_10025825; scaffold986 WUBlastX DNA_Harbinger 137831 137971 51 - . . scaffold986 GLEAN mRNA 135296 141072 0.877811 + . ID=CGI_10009960; scaffold433 WUBlastX DNA_PiggyBac 1263383 1263733 199 - . . scaffold433 GLEAN mRNA 1258038 1264095 0.626587 - . ID=CGI_10027122; scaffold210 WUBlastX LINE_RTE-X 141722 142165 143 + . . scaffold210 GLEAN mRNA 130765 152251 0.999676 - . ID=CGI_10015883; scaffold1335 WUBlastX LINE_Penelope 12758 13204 141 - . . scaffold1335 GLEAN mRNA 497 21134 0.65089 + . ID=CGI_10001395; scaffold1097 WUBlastX LINE_RTE-BovB 683204 683470 47 - . . scaffold1097 GLEAN mRNA 671182 687187 0.811238 + . ID=CGI_10024541; scaffold683 WUBlastX LINE_RTE-X 82103 82888 198 - . . scaffold683 GLEAN mRNA 80657 98109 0.999674 + . ID=CGI_10010356; scaffold508 WUBlastX LTR_Gypsy 15134 15850 221 - . . scaffold508 GLEAN mRNA 12073 17406 0.968836 - . ID=CGI_10011191; scaffold226 WUBlastX LTR_Gypsy 921740 922456 221 + . . scaffold226 GLEAN mRNA 913200 931789 0.655497 - . ID=CGI_10025388; scaffold695 WUBlastX LINE_L1-Tx1 89024 89170 31 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold38026 WUBlastX LTR_Gypsy 25220 25423 76 + . . scaffold38026 GLEAN mRNA 24330 29871 1 - . ID=CGI_10002428; scaffold1244 WUBlastX LTR_Gypsy 125151 126143 520 - . . scaffold1244 GLEAN mRNA 121009 134472 0.646055 + . ID=CGI_10020823; scaffold43208 WUBlastX LINE_RTE-X 135114 136430 341 - . . scaffold43208 GLEAN mRNA 124106 156003 0.962351 + . ID=CGI_10009358; scaffold94 WUBlastX LTR_Gypsy 65550 66476 302 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold38374 WUBlastX LTR_Gypsy 16215 17153 288 + . . scaffold38374 GLEAN mRNA 8302 17987 0.957619 + . ID=CGI_10002746; scaffold99 WUBlastX LINE_L1-Tx1 361959 362267 28 + . . scaffold99 GLEAN mRNA 358334 365567 0.999675 + . ID=CGI_10021202; scaffold1221 WUBlastX LTR_Gypsy 68256 68564 206 - . . scaffold1221 GLEAN mRNA 56411 69596 0.696179 + . ID=CGI_10019728; scaffold36936 WUBlastX LTR_Pao 17384 17992 37 - . . scaffold36936 GLEAN mRNA 314 25498 0.932631 - . ID=CGI_10002182; scaffold667 WUBlastX LINE_CR1-L2 18388 18624 54 + . . scaffold667 GLEAN mRNA 6729 22533 0.999844 - . ID=CGI_10005354; scaffold43954 WUBlastX LINE_CR1 146536 146661 39 + . . scaffold43954 GLEAN mRNA 139153 149832 0.999998 - . ID=CGI_10014576; scaffold419 WUBlastX LINE_CR1 1269822 1269932 26 - . . scaffold419 GLEAN mRNA 1266298 1276946 0.922495 + . ID=CGI_10028402; scaffold394 WUBlastX LTR_Gypsy-Cigr 437007 437276 77 + . . scaffold394 GLEAN mRNA 435520 450975 0.532272 + . ID=CGI_10022085; C30140 WUBlastX LTR_Gypsy 1968 2000 33 + . . C30140 GLEAN mRNA 1968 2204 0.618186 + . ID=CGI_10000597; scaffold419 WUBlastX LINE_RTE 807459 807725 37 + . . scaffold419 GLEAN mRNA 806382 811629 0.999675 - . ID=CGI_10028368; C31096 WUBlastX LTR_DIRS 5782 6486 28 - . . C31096 GLEAN mRNA 4535 6700 0.999978 - . ID=CGI_10000705; scaffold1221 WUBlastX LTR_Gypsy 86125 86205 84 + . . scaffold1221 GLEAN mRNA 84840 95252 0.99967 - . ID=CGI_10019730; scaffold6 WUBlastX DNA_hAT-Tip100 723627 723869 67 + . . scaffold6 GLEAN mRNA 701995 741494 0.270237 + . ID=CGI_10022334; scaffold44054 WUBlastX DNA_Kolobok-Hyd 72031 72414 27 - . . scaffold44054 GLEAN mRNA 71971 72414 0.999106 - . ID=CGI_10016156; scaffold1154 WUBlastX DNA_Kolobok-Hyd 65475 65912 36 + . . scaffold1154 GLEAN mRNA 65325 66512 0.77656 + . ID=CGI_10026149; scaffold458 WUBlastX LTR_Ngaro 175957 176124 57 + . . scaffold458 GLEAN mRNA 171659 179488 0.10231 + . ID=CGI_10013591; scaffold58 WUBlastX DNA_TcMar-Marin 564765 565154 37 - . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; scaffold502 WUBlastX LINE_Penelope 279831 280037 47 - . . scaffold502 GLEAN mRNA 265921 292012 0.339102 + . ID=CGI_10024318; scaffold377 WUBlastX LINE_RTE-X 143820 143957 35 + . . scaffold377 GLEAN mRNA 140445 144953 0.80154 - . ID=CGI_10019404; scaffold1719 WUBlastX LINE_RTE-X 316460 316744 28 - . . scaffold1719 GLEAN mRNA 297152 319693 0.889105 - . ID=CGI_10014286; scaffold4 WUBlastX LINE_L1-Tx1 435651 435863 36 + . . scaffold4 GLEAN mRNA 420407 460487 0.960328 - . ID=CGI_10021179; scaffold719 WUBlastX DNA_MuDR 350223 350417 65 - . . scaffold719 GLEAN mRNA 350223 350417 0.481188 - . ID=CGI_10016007; scaffold58 WUBlastX DNA_hAT-Blackja 519936 520130 58 - . . scaffold58 GLEAN mRNA 517451 527850 1 - . ID=CGI_10023148; scaffold392 WUBlastX LTR_Gypsy 36015 36407 21 - . . scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; scaffold1024 WUBlastX DNA_IS4EU 1761773 1761991 74 - . . scaffold1024 GLEAN mRNA 1751618 1765575 0.556405 - . ID=CGI_10028585; scaffold102 WUBlastX DNA_hAT 1538666 1538815 55 - . . scaffold102 GLEAN mRNA 1532525 1541174 0.3501 - . ID=CGI_10028505; scaffold149 WUBlastX LINE_L2 85595 85804 41 - . . scaffold149 GLEAN mRNA 83928 102929 0.964877 + . ID=CGI_10025289; scaffold853 WUBlastX DNA_Kolobok-Hyd 207816 207890 42 + . . scaffold853 GLEAN mRNA 204099 212863 1 - . ID=CGI_10017494; scaffold853 WUBlastX DNA_Kolobok-Hyd 207816 207890 42 + . . scaffold853 GLEAN mRNA 206619 210945 0.253956 + . ID=CGI_10017495; scaffold1149 WUBlastX LINE_RTE-X 164650 164793 40 + . . scaffold1149 GLEAN mRNA 149088 177869 0.31262 + . ID=CGI_10023454; scaffold42402 WUBlastX LINE_RTE-X 129965 130099 39 + . . scaffold42402 GLEAN mRNA 124224 132825 0.999027 - . ID=CGI_10006795; scaffold42402 WUBlastX LINE_RTE-X 129965 130099 39 + . . scaffold42402 GLEAN mRNA 127799 151962 1 + . ID=CGI_10006796; scaffold41928 WUBlastX DNA_Zator 35904 36134 58 + . . scaffold41928 GLEAN mRNA 28917 39705 0.734554 - . ID=CGI_10005836; scaffold41598 WUBlastX DNA_PiggyBac 66380 66574 40 - . . scaffold41598 GLEAN mRNA 59426 74794 0.449575 - . ID=CGI_10005304; scaffold316 WUBlastX LTR_Gypsy 16599 16802 66 + . . scaffold316 GLEAN mRNA 23 25141 0.301379 - . ID=CGI_10001602; scaffold43954 WUBlastX DNA_MuDR 334847 335029 41 + . . scaffold43954 GLEAN mRNA 334847 335729 0.999507 + . ID=CGI_10014586; scaffold43954 WUBlastX DNA_MuDR 335328 335387 22 + . . scaffold43954 GLEAN mRNA 334847 335729 0.999507 + . ID=CGI_10014586; scaffold43008 WUBlastX LINE_L2 2736 2888 44 + . . scaffold43008 GLEAN mRNA 2147 17942 0.982229 + . ID=CGI_10008457; scaffold193 WUBlastX LINE_RTE-X 65311 65646 82 - . . scaffold193 GLEAN mRNA 59988 95620 0.99962 + . ID=CGI_10015222; scaffold1154 WUBlastX LINE_RTE-X 1033017 1033421 65 + . . scaffold1154 GLEAN mRNA 1031436 1038206 0.969571 + . ID=CGI_10026203; scaffold41164 WUBlastX LINE_RTE-X 86818 87024 84 + . . scaffold41164 GLEAN mRNA 83753 104051 0.95986 - . ID=CGI_10004764; scaffold41162 WUBlastX LTR_ERV1 90198 90443 27 - . . scaffold41162 GLEAN mRNA 73852 107906 0.526733 + . ID=CGI_10004777; scaffold38306 WUBlastX LINE_L1-Tx1 7256 7615 86 + . . scaffold38306 GLEAN mRNA 6272 12349 0.99842 - . ID=CGI_10002711; scaffold1882 WUBlastX LTR_Pao 19413 19496 27 + . . scaffold1882 GLEAN mRNA 8742 29941 0.650712 + . ID=CGI_10010492; scaffold298 WUBlastX LTR_Ngaro 299028 299453 79 + . . scaffold298 GLEAN mRNA 297759 312412 0.999402 - . ID=CGI_10018824; scaffold1782 WUBlastX DNA_Kolobok 18663 18872 78 - . . scaffold1782 GLEAN mRNA 7792 19893 0.99249 - . ID=CGI_10004240; scaffold72 WUBlastX DNA_TcMar-Marin 209739 210272 121 + . . scaffold72 GLEAN mRNA 207105 213716 0.998726 - . ID=CGI_10017841; scaffold348 WUBlastX LINE_L1-Tx1 165029 165391 66 - . . scaffold348 GLEAN mRNA 160739 182763 0.583298 + . ID=CGI_10022972; scaffold40836 WUBlastX LINE_L2 87262 87483 59 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold1687 WUBlastX DNA_IS4EU 178903 179430 177 - . . scaffold1687 GLEAN mRNA 175921 180780 0.898283 + . ID=CGI_10008394; scaffold1084 WUBlastX LTR_DIRS 152095 153762 1009 + . . scaffold1084 GLEAN mRNA 143113 160475 0.702333 + . ID=CGI_10010078; scaffold695 WUBlastX LINE_L1 88747 88845 22 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold42030 WUBlastX LINE_RTE-X 77289 78563 223 + . . scaffold42030 GLEAN mRNA 73599 103190 0.98897 + . ID=CGI_10006046; scaffold1518 WUBlastX LINE_L2 285771 285986 107 + . . scaffold1518 GLEAN mRNA 258241 287104 0.241996 + . ID=CGI_10017803; scaffold522 WUBlastX LTR_Gypsy 557062 557181 44 - . . scaffold522 GLEAN mRNA 555460 561290 0.999999 + . ID=CGI_10020338; scaffold980 WUBlastX LINE_RTE-X 165587 165745 42 + . . scaffold980 GLEAN mRNA 163810 172327 0.499535 - . ID=CGI_10019213; scaffold987 WUBlastX LINE_L1-Tx1 76494 76724 84 - . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold1104 WUBlastX LINE_CR1 516130 517539 852 + . . scaffold1104 GLEAN mRNA 502059 528268 0.99448 - . ID=CGI_10020391; scaffold1188 WUBlastX LINE_L1-Tx1 790953 791144 25 - . . scaffold1188 GLEAN mRNA 787973 796993 0.991964 + . ID=CGI_10025502; scaffold1188 WUBlastX LINE_L1-Tx1 791148 791237 31 - . . scaffold1188 GLEAN mRNA 787973 796993 0.991964 + . ID=CGI_10025502; scaffold1252 WUBlastX LINE_RTE-X 341848 342546 212 - . . scaffold1252 GLEAN mRNA 294568 343049 0.93602 - . ID=CGI_10013124; scaffold479 WUBlastX LTR_Ngaro 87495 88199 224 + . . scaffold479 GLEAN mRNA 82405 99723 0.898056 + . ID=CGI_10015682; scaffold61 WUBlastX LINE_RTE-X 91091 91372 91 + . . scaffold61 GLEAN mRNA 83781 97404 0.999676 - . ID=CGI_10016342; scaffold61 WUBlastX LINE_RTE-X 92046 92312 115 + . . scaffold61 GLEAN mRNA 83781 97404 0.999676 - . ID=CGI_10016342; scaffold544 WUBlastX LINE_L1 210878 211090 45 - . . scaffold544 GLEAN mRNA 202069 215253 0.999676 + . ID=CGI_10022552; scaffold204 WUBlastX DNA_Harbinger 414185 414403 49 + . . scaffold204 GLEAN mRNA 394042 414406 0.339936 + . ID=CGI_10026106; scaffold1179 WUBlastX LTR_Gypsy 22967 23140 58 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold42674 WUBlastX LINE_RTE-X 172558 173247 266 - . . scaffold42674 GLEAN mRNA 169493 180850 0.544647 + . ID=CGI_10007448; scaffold1054 WUBlastX DNA_Kolobok 331138 331824 209 + . . scaffold1054 GLEAN mRNA 331138 333504 0.999415 + . ID=CGI_10012969; scaffold40440 WUBlastX LINE_Penelope 53023 54330 262 + . . scaffold40440 GLEAN mRNA 51085 65707 0.320377 - . ID=CGI_10004144; scaffold40440 WUBlastX LINE_Penelope 54413 54550 28 + . . scaffold40440 GLEAN mRNA 51085 65707 0.320377 - . ID=CGI_10004144; scaffold288 WUBlastX DNA_TcMar-Tc1 159565 159654 25 - . . scaffold288 GLEAN mRNA 144555 164915 0.948447 + . ID=CGI_10020659; scaffold347 WUBlastX DNA_TcMar-Tc1 654810 655823 386 - . . scaffold347 GLEAN mRNA 648161 659682 0.997772 - . ID=CGI_10021805; scaffold35438 WUBlastX LINE_L1 10403 11299 322 - . . scaffold35438 GLEAN mRNA 3327 22372 0.999028 - . ID=CGI_10001514; scaffold705 WUBlastX LINE_Penelope 59260 59949 373 + . . scaffold705 GLEAN mRNA 54891 78972 0.408277 - . ID=CGI_10015497; scaffold1009 WUBlastX DNA_hAT 495770 496030 135 + . . scaffold1009 GLEAN mRNA 486872 502575 0.999001 - . ID=CGI_10028738; scaffold1888 WUBlastX LINE_RTE-X 76443 77924 570 + . . scaffold1888 GLEAN mRNA 63277 86416 0.994729 - . ID=CGI_10013295; scaffold286 WUBlastX LINE_RTE-X 103928 104506 350 + . . scaffold286 GLEAN mRNA 101905 133971 0.984811 - . ID=CGI_10015959; scaffold454 WUBlastX LINE_L2 97785 98726 230 - . . scaffold454 GLEAN mRNA 93341 108889 0.996665 - . ID=CGI_10011629; scaffold99 WUBlastX LINE_L1-Tx1 360328 361449 246 + . . scaffold99 GLEAN mRNA 358334 365567 0.999675 + . ID=CGI_10021202; scaffold1769 WUBlastX LINE_L2 145125 145295 26 - . . scaffold1769 GLEAN mRNA 144291 189811 0.937759 - . ID=CGI_10009242; scaffold772 WUBlastX LINE_RTE-BovB 177718 177825 47 - . . scaffold772 GLEAN mRNA 173305 179319 1 + . ID=CGI_10016584; scaffold1670 WUBlastX LTR_Gypsy 456390 456971 63 + . . scaffold1670 GLEAN mRNA 448842 475285 0.99939 + . ID=CGI_10017627; scaffold38900 WUBlastX DNA_Harbinger 21619 21771 66 - . . scaffold38900 GLEAN mRNA 4144 21771 0.999939 - . ID=CGI_10003039; scaffold33724 WUBlastX DNA_Harbinger 13745 13903 66 + . . scaffold33724 GLEAN mRNA 1518 14940 0.969602 + . ID=CGI_10001124; scaffold43562 WUBlastX DNA_TcMar-Marin 168065 168163 20 + . . scaffold43562 GLEAN mRNA 166638 176461 0.999676 + . ID=CGI_10011038; scaffold43562 WUBlastX DNA_TcMar-Marin 168065 168163 20 + . . scaffold43562 GLEAN mRNA 156935 180007 0.944081 - . ID=CGI_10011037; scaffold1584 WUBlastX RC_Helitron 343016 343291 79 - . . scaffold1584 GLEAN mRNA 342917 343357 0.69447 - . ID=CGI_10015089; scaffold102 WUBlastX DNA_TcMar-Tc2 257623 257802 48 - . . scaffold102 GLEAN mRNA 251987 267295 0.910885 - . ID=CGI_10028430; C28592 WUBlastX DNA_Kolobok-Hyd 2199 2411 46 + . . C28592 GLEAN mRNA 2193 2492 1 + . ID=CGI_10000444; scaffold352 WUBlastX DNA_PiggyBac 310119 310352 35 + . . scaffold352 GLEAN mRNA 309286 319403 1 + . ID=CGI_10012251; scaffold94 WUBlastX LINE_RTE-X 241049 241207 40 - . . scaffold94 GLEAN mRNA 239838 248171 0.915918 + . ID=CGI_10013919; scaffold40182 WUBlastX LINE_RTE-X 18753 18830 57 + . . scaffold40182 GLEAN mRNA 7136 27863 0.492081 + . ID=CGI_10003936; scaffold38272 WUBlastX LTR_Gypsy 12145 12726 27 + . . scaffold38272 GLEAN mRNA 12040 52169 0.605388 + . ID=CGI_10002702; scaffold552 WUBlastX LTR_DIRS 70403 70741 96 + . . scaffold552 GLEAN mRNA 69612 73670 0.367121 + . ID=CGI_10009321; scaffold987 WUBlastX LINE_CR1-L2 80403 80573 81 + . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold967 WUBlastX LTR_Gypsy 144233 144238 89 - . . scaffold967 GLEAN mRNA 143924 144238 0.999304 - . ID=CGI_10015456; scaffold1138 WUBlastX LTR_Gypsy 174466 174477 34 + . . scaffold1138 GLEAN mRNA 174466 179423 0.789389 + . ID=CGI_10015372; scaffold38780 WUBlastX LTR_Gypsy 13376 13555 34 + . . scaffold38780 GLEAN mRNA 2671 16848 0.959487 - . ID=CGI_10002959; scaffold6 WUBlastX DNA_IS4EU 714695 714838 51 - . . scaffold6 GLEAN mRNA 701995 741494 0.270237 + . ID=CGI_10022334; scaffold43072 WUBlastX LINE_L1 190913 191401 20 - . . scaffold43072 GLEAN mRNA 190073 191902 0.999933 - . ID=CGI_10008706; scaffold517 WUBlastX LINE_Penelope 209608 209781 33 - . . scaffold517 GLEAN mRNA 207961 216861 0.317127 - . ID=CGI_10008985; scaffold517 WUBlastX LINE_Penelope 209768 210058 38 - . . scaffold517 GLEAN mRNA 207961 216861 0.317127 - . ID=CGI_10008985; scaffold459 WUBlastX DNA_TcMar-Marin 132427 132531 36 - . . scaffold459 GLEAN mRNA 130507 139915 0.650578 - . ID=CGI_10018170; scaffold251 WUBlastX DNA_TcMar-Tc1 106338 106679 81 - . . scaffold251 GLEAN mRNA 105906 108952 0.904704 - . ID=CGI_10005222; scaffold79 WUBlastX DNA_TcMar-Tc1 261611 262045 47 - . . scaffold79 GLEAN mRNA 257196 271359 0.644901 + . ID=CGI_10024620; scaffold42584 WUBlastX DNA_Crypton 95483 95896 87 - . . scaffold42584 GLEAN mRNA 87388 105090 0.998677 + . ID=CGI_10007309; scaffold1639 WUBlastX DNA_IS4EU 83460 83780 86 - . . scaffold1639 GLEAN mRNA 82644 83780 1 - . ID=CGI_10005439; scaffold1639 WUBlastX DNA_IS4EU 83815 83885 86 - . . scaffold1639 GLEAN mRNA 83815 84948 1 - . ID=CGI_10005440; scaffold681 WUBlastX DNA_TcMar-Fot1 54570 54604 90 - . . scaffold681 GLEAN mRNA 51586 54604 0.96497 + . ID=CGI_10014720; scaffold43648 WUBlastX DNA_Kolobok 235511 235732 56 + . . scaffold43648 GLEAN mRNA 231599 237776 0.973881 - . ID=CGI_10011593; scaffold40186 WUBlastX LINE_RTE-BovB 22401 23225 56 + . . scaffold40186 GLEAN mRNA 18331 26539 0.486093 - . ID=CGI_10003927; C29388 WUBlastX LINE_RTE-X 5015 5521 86 + . . C29388 GLEAN mRNA 1255 5572 0.998536 + . ID=CGI_10000526; scaffold560 WUBlastX LINE_RTE-X 139743 139967 84 - . . scaffold560 GLEAN mRNA 134675 160538 0.941337 + . ID=CGI_10008753; scaffold156 WUBlastX LINE_L2 721787 722146 96 + . . scaffold156 GLEAN mRNA 716803 736043 0.463925 - . ID=CGI_10026517; scaffold305 WUBlastX LINE_Penelope 143065 143682 69 - . . scaffold305 GLEAN mRNA 133464 157357 0.544675 - . ID=CGI_10019118; scaffold987 WUBlastX LINE_CR1 81552 82067 87 + . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold35438 WUBlastX DNA_MuDR 14851 15249 47 - . . scaffold35438 GLEAN mRNA 3327 22372 0.999028 - . ID=CGI_10001514; scaffold75 WUBlastX LTR_Pao 66961 67545 113 - . . scaffold75 GLEAN mRNA 46839 68019 0.92374 - . ID=CGI_10005790; scaffold1125 WUBlastX LINE_Penelope 296521 297084 89 - . . scaffold1125 GLEAN mRNA 258264 306646 0.367081 + . ID=CGI_10012342; scaffold681 WUBlastX LINE_RTE-X 57434 57772 98 - . . scaffold681 GLEAN mRNA 56607 61222 0.999967 + . ID=CGI_10014721; scaffold609 WUBlastX LINE_RTE-X 186076 186438 102 - . . scaffold609 GLEAN mRNA 183215 213482 0.840088 + . ID=CGI_10010464; scaffold392 WUBlastX LINE_RTE-X 448189 448626 45 - . . scaffold392 GLEAN mRNA 426913 455766 0.44936 + . ID=CGI_10024218; scaffold392 WUBlastX LINE_RTE-X 448661 450142 657 - . . scaffold392 GLEAN mRNA 426913 455766 0.44936 + . ID=CGI_10024218; scaffold1733 WUBlastX LINE_L2 164854 165231 162 + . . scaffold1733 GLEAN mRNA 156260 181153 0.701996 + . ID=CGI_10009488; scaffold138 WUBlastX LINE_L2 164292 164621 100 - . . scaffold138 GLEAN mRNA 160827 167097 0.989024 - . ID=CGI_10008431; scaffold828 WUBlastX LINE_L1-Tx1 80933 81091 22 - . . scaffold828 GLEAN mRNA 78778 92221 0.986584 - . ID=CGI_10007365; scaffold1791 WUBlastX LTR_Ngaro 97930 99558 997 + . . scaffold1791 GLEAN mRNA 83527 103062 0.896369 - . ID=CGI_10007868; scaffold1714 WUBlastX LINE_CR1 311251 311829 41 - . . scaffold1714 GLEAN mRNA 306589 325335 0.999557 + . ID=CGI_10013680; scaffold286 WUBlastX LINE_L2 103377 103868 69 + . . scaffold286 GLEAN mRNA 101905 133971 0.984811 - . ID=CGI_10015959; scaffold382 WUBlastX DNA_Kolobok-IS4 42817 43407 154 - . . scaffold382 GLEAN mRNA 40511 73048 0.0752347 + . ID=CGI_10004503; scaffold1715 WUBlastX LINE_Penelope 328143 328268 49 + . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold1009 WUBlastX LINE_RTE-BovB 1403603 1404013 43 - . . scaffold1009 GLEAN mRNA 1385958 1409839 0.363333 + . ID=CGI_10028796; scaffold1750 WUBlastX LTR_Gypsy-Troyk 679453 679779 235 - . . scaffold1750 GLEAN mRNA 679453 687752 0.873959 - . ID=CGI_10021501; scaffold525 WUBlastX DNA_IS4EU 58957 59064 33 + . . scaffold525 GLEAN mRNA 58067 60404 0.665804 + . ID=CGI_10008573; scaffold894 WUBlastX DNA_hAT-Tip100 152465 153283 198 - . . scaffold894 GLEAN mRNA 150089 157261 0.544755 - . ID=CGI_10008547; scaffold113 WUBlastX LINE_L1-Tx1 253217 253645 48 - . . scaffold113 GLEAN mRNA 246298 256285 1 - . ID=CGI_10021289; scaffold203 WUBlastX LINE_RTE-X 628979 629326 104 - . . scaffold203 GLEAN mRNA 599632 671214 0.810319 + . ID=CGI_10021081; scaffold258 WUBlastX LINE_CR1 318282 318710 263 + . . scaffold258 GLEAN mRNA 316614 320715 1 + . ID=CGI_10020057; scaffold858 WUBlastX LINE_L2 17344 17397 24 - . . scaffold858 GLEAN mRNA 10847 22761 0.93008 - . ID=CGI_10004935; scaffold142 WUBlastX DNA_NOF? 982754 983443 118 + . . scaffold142 GLEAN mRNA 963818 985587 0.999623 - . ID=CGI_10026782; scaffold374 WUBlastX DNA_hAT-Tip100 167048 167818 142 - . . scaffold374 GLEAN mRNA 164183 170659 0.970084 - . ID=CGI_10018719; scaffold847 WUBlastX LTR_Gypsy 597710 598033 266 - . . scaffold847 GLEAN mRNA 588396 606136 0.840326 - . ID=CGI_10022283; scaffold1574 WUBlastX LINE_Telomeric 458288 458536 51 - . . scaffold1574 GLEAN mRNA 452128 459537 0.999957 + . ID=CGI_10016335; C35840 WUBlastX DNA_Harbinger 709 846 28 - . . C35840 GLEAN mRNA 655 3933 0.500738 - . ID=CGI_10001630; scaffold184 WUBlastX LINE_Penelope 160590 161024 303 - . . scaffold184 GLEAN mRNA 157859 165368 0.999999 - . ID=CGI_10014796; scaffold1532 WUBlastX LTR_Ngaro 641498 641788 124 + . . scaffold1532 GLEAN mRNA 638492 642462 0.995183 + . ID=CGI_10028264; C35042 WUBlastX LINE_RTE-X 9420 10523 262 - . . C35042 GLEAN mRNA 1730 15534 0.391528 + . ID=CGI_10001403; scaffold42740 WUBlastX DNA_Harbinger 75309 76163 323 - . . scaffold42740 GLEAN mRNA 65305 90130 0.999494 + . ID=CGI_10007608; scaffold42740 WUBlastX DNA_Harbinger 75816 76163 323 - . . scaffold42740 GLEAN mRNA 75816 93610 0.249736 - . ID=CGI_10007609; scaffold934 WUBlastX LINE_L1-Tx1 266073 266222 44 - . . scaffold934 GLEAN mRNA 262254 282098 1 - . ID=CGI_10015446; scaffold43146 WUBlastX DNA_IS4EU 101062 101268 32 + . . scaffold43146 GLEAN mRNA 80112 107835 0.644637 + . ID=CGI_10009042; scaffold43146 WUBlastX DNA_IS4EU 101285 101386 54 + . . scaffold43146 GLEAN mRNA 80112 107835 0.644637 + . ID=CGI_10009042; scaffold43146 WUBlastX DNA_IS4EU 101388 102017 185 + . . scaffold43146 GLEAN mRNA 80112 107835 0.644637 + . ID=CGI_10009042; scaffold43146 WUBlastX DNA_IS4EU 102025 102570 130 + . . scaffold43146 GLEAN mRNA 80112 107835 0.644637 + . ID=CGI_10009042; scaffold33980 WUBlastX LTR_Ngaro 9845 10714 314 - . . scaffold33980 GLEAN mRNA 2151 15835 0.664854 + . ID=CGI_10001168; scaffold39134 WUBlastX LTR_Gypsy 48923 49456 178 + . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold39134 WUBlastX LTR_Gypsy 49420 49656 145 + . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold39134 WUBlastX LTR_Gypsy 49686 50204 319 + . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold1377 WUBlastX LTR_Gypsy 150098 150220 27 + . . scaffold1377 GLEAN mRNA 119143 150442 0.64366 + . ID=CGI_10008621; scaffold1154 WUBlastX LTR_Ngaro 366896 368362 691 + . . scaffold1154 GLEAN mRNA 360464 375818 0.544657 - . ID=CGI_10026164; scaffold1154 WUBlastX LTR_Ngaro 366896 368362 691 + . . scaffold1154 GLEAN mRNA 365982 369978 0.558383 + . ID=CGI_10026165; scaffold942 WUBlastX DNA_PiggyBac 124694 125830 562 - . . scaffold942 GLEAN mRNA 113666 137722 0.300224 + . ID=CGI_10019154; C34856 WUBlastX LTR_Gypsy 9229 9402 151 + . . C34856 GLEAN mRNA 131 10544 0.998639 + . ID=CGI_10001362; C34856 WUBlastX LTR_Gypsy 9387 9521 106 + . . C34856 GLEAN mRNA 131 10544 0.998639 + . ID=CGI_10001362; C34856 WUBlastX LTR_Gypsy 9524 10219 594 + . . C34856 GLEAN mRNA 131 10544 0.998639 + . ID=CGI_10001362; scaffold925 WUBlastX LTR_Gypsy 249021 250439 207 - . . scaffold925 GLEAN mRNA 245750 251543 0.996749 - . ID=CGI_10017422; scaffold43280 WUBlastX LTR_Gypsy 167479 167622 46 + . . scaffold43280 GLEAN mRNA 132335 177835 0.651964 - . ID=CGI_10009657; scaffold1127 WUBlastX LINE_L1-Tx1 17258 17716 57 - . . scaffold1127 GLEAN mRNA 44 22807 0.494799 - . ID=CGI_10010645; scaffold240 WUBlastX LINE_CR1-L2 159931 160113 65 - . . scaffold240 GLEAN mRNA 157462 167089 0.999253 - . ID=CGI_10007850; scaffold204 WUBlastX DNA_TcMar-ISRm1 577442 577891 40 + . . scaffold204 GLEAN mRNA 573438 596887 0.209879 + . ID=CGI_10026118; scaffold1100 WUBlastX LTR_Pao 38165 38740 54 + . . scaffold1100 GLEAN mRNA 34919 38872 0.9999 + . ID=CGI_10009426; scaffold1816 WUBlastX LINE_L2 120124 120390 38 + . . scaffold1816 GLEAN mRNA 110695 122090 0.998785 + . ID=CGI_10014398; scaffold890 WUBlastX LINE_L2 290532 290780 39 - . . scaffold890 GLEAN mRNA 287435 312343 0.999997 - . ID=CGI_10014480; scaffold42528 WUBlastX LTR_ERV1 144177 144242 54 + . . scaffold42528 GLEAN mRNA 136401 146936 0.889923 + . ID=CGI_10007210; C28258 WUBlastX LINE_I 3417 3872 36 + . . C28258 GLEAN mRNA 3417 4139 0.593325 + . ID=CGI_10000414; scaffold1564 WUBlastX DNA_hAT-Ac 107842 108012 22 - . . scaffold1564 GLEAN mRNA 80148 112523 0.650997 - . ID=CGI_10005199; scaffold1855 WUBlastX LTR_Gypsy 137665 137898 26 - . . scaffold1855 GLEAN mRNA 127608 144309 0.514933 - . ID=CGI_10008870; scaffold392 WUBlastX LTR_Gypsy 36024 36317 25 - . . scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; scaffold1558 WUBlastX LINE_L1 41203 41352 65 - . . scaffold1558 GLEAN mRNA 34398 73907 0.517269 - . ID=CGI_10004094; scaffold1154 WUBlastX LINE_RTE-X 369732 370094 79 + . . scaffold1154 GLEAN mRNA 360464 375818 0.544657 - . ID=CGI_10026164; scaffold1154 WUBlastX LINE_RTE-X 369732 369978 79 + . . scaffold1154 GLEAN mRNA 365982 369978 0.558383 + . ID=CGI_10026165; scaffold421 WUBlastX LINE_RTE-X 187283 187615 20 + . . scaffold421 GLEAN mRNA 182657 200231 1 + . ID=CGI_10012156; scaffold773 WUBlastX LTR_Copia 266714 267043 43 + . . scaffold773 GLEAN mRNA 235107 267865 0.138953 - . ID=CGI_10011348; scaffold38272 WUBlastX LINE_L1-Tx1 48314 48436 26 + . . scaffold38272 GLEAN mRNA 12040 52169 0.605388 + . ID=CGI_10002702; scaffold168 WUBlastX DNA_MuDR 178968 179126 62 - . . scaffold168 GLEAN mRNA 178276 183101 0.805771 - . ID=CGI_10025586; scaffold442 WUBlastX LINE_L2 79786 80046 78 + . . scaffold442 GLEAN mRNA 79786 80136 0.999397 + . ID=CGI_10005515; scaffold20 WUBlastX DNA_Harbinger 756872 756929 28 + . . scaffold20 GLEAN mRNA 756872 758344 0.738574 - . ID=CGI_10023597; scaffold445 WUBlastX LINE_RTE-X 173438 173665 37 - . . scaffold445 GLEAN mRNA 165031 179035 0.981925 - . ID=CGI_10019432; scaffold445 WUBlastX LINE_RTE-X 173438 173665 37 - . . scaffold445 GLEAN mRNA 157494 175078 0.500104 + . ID=CGI_10019431; scaffold1605 WUBlastX DNA_hAT 53509 53865 117 - . . scaffold1605 GLEAN mRNA 51474 53886 1 - . ID=CGI_10023343; scaffold290 WUBlastX DNA_hAT 534221 534448 75 + . . scaffold290 GLEAN mRNA 534221 539598 0.981153 + . ID=CGI_10018554; scaffold42840 WUBlastX DNA_Crypton 120298 120549 98 - . . scaffold42840 GLEAN mRNA 99061 121834 0.994857 - . ID=CGI_10007835; scaffold1596 WUBlastX DNA_Crypton 6552 6731 61 + . . scaffold1596 GLEAN mRNA 5776 6731 0.997715 + . ID=CGI_10000647; scaffold13 WUBlastX DNA_IS4EU 193300 193425 36 + . . scaffold13 GLEAN mRNA 172056 194004 0.998501 + . ID=CGI_10013207; scaffold35406 WUBlastX LINE_Jockey 16155 16388 43 + . . scaffold35406 GLEAN mRNA 1505 18996 0.688101 - . ID=CGI_10001499; scaffold1241 WUBlastX LINE_L1 330448 330513 25 + . . scaffold1241 GLEAN mRNA 329086 342003 0.999796 + . ID=CGI_10016436; scaffold950 WUBlastX LINE_Rex-Babar 48809 48913 29 + . . scaffold950 GLEAN mRNA 45484 50998 0.326384 + . ID=CGI_10022918; scaffold461 WUBlastX LINE_RTE-X 505612 505803 63 + . . scaffold461 GLEAN mRNA 502998 509730 0.979735 + . ID=CGI_10020117; scaffold209 WUBlastX LTR_DIRS 256723 256818 29 + . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX LTR_DIRS 256821 256901 48 + . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold44 WUBlastX DNA_Zator 90192 90296 24 + . . scaffold44 GLEAN mRNA 84536 96783 0.779083 + . ID=CGI_10016819; scaffold667 WUBlastX LINE_CR1-L2 18430 18693 100 + . . scaffold667 GLEAN mRNA 6729 22533 0.999844 - . ID=CGI_10005354; scaffold1889 WUBlastX LINE_RTE-X 207443 207718 45 + . . scaffold1889 GLEAN mRNA 199666 208024 0.836613 - . ID=CGI_10019608; scaffold42096 WUBlastX LINE_RTE-X 105249 105821 37 + . . scaffold42096 GLEAN mRNA 96755 112781 0.947295 - . ID=CGI_10006165; scaffold492 WUBlastX LINE_CR1 268705 269418 33 - . . scaffold492 GLEAN mRNA 268203 287677 0.999027 + . ID=CGI_10024818; scaffold42866 WUBlastX DNA_IS4EU 71251 71763 113 - . . scaffold42866 GLEAN mRNA 43150 93731 0.871395 + . ID=CGI_10007991; scaffold1834 WUBlastX DNA_MuDR 190370 191512 30 + . . scaffold1834 GLEAN mRNA 187623 216470 0.374762 + . ID=CGI_10016658; scaffold43076 WUBlastX RC_Helitron 181025 181531 72 - . . scaffold43076 GLEAN mRNA 177922 191367 0.98946 - . ID=CGI_10008769; scaffold867 WUBlastX LINE_L1-Tx1 254198 254383 100 + . . scaffold867 GLEAN mRNA 253182 264678 0.938203 - . ID=CGI_10026215; scaffold1785 WUBlastX DNA_Harbinger 909599 909844 125 - . . scaffold1785 GLEAN mRNA 909020 927662 0.54223 - . ID=CGI_10024406; scaffold1766 WUBlastX LTR_DIRS 11633 11797 78 + . . scaffold1766 GLEAN mRNA 8111 13760 0.999906 - . ID=CGI_10006270; scaffold1766 WUBlastX LTR_DIRS 11788 11886 30 + . . scaffold1766 GLEAN mRNA 8111 13760 0.999906 - . ID=CGI_10006270; scaffold400 WUBlastX LINE_L1-Tx1 197504 197776 45 - . . scaffold400 GLEAN mRNA 195909 223191 0.813725 - . ID=CGI_10011437; scaffold1127 WUBlastX LINE_L1 17710 18129 42 - . . scaffold1127 GLEAN mRNA 44 22807 0.494799 - . ID=CGI_10010645; scaffold790 WUBlastX LINE_CR1-L2 240758 241090 178 - . . scaffold790 GLEAN mRNA 239122 257283 0.83657 + . ID=CGI_10013172; scaffold43686 WUBlastX LTR_Gypsy 188594 188674 21 - . . scaffold43686 GLEAN mRNA 172665 193661 0.978405 - . ID=CGI_10011758; scaffold39196 WUBlastX LTR_ERVK 25931 25993 22 + . . scaffold39196 GLEAN mRNA 20999 26289 0.999968 + . ID=CGI_10003216; scaffold39196 WUBlastX LTR_ERVK 25931 25993 22 + . . scaffold39196 GLEAN mRNA 18014 59804 0.5589 - . ID=CGI_10003215; C27694 WUBlastX DNA_Maverick 2556 2702 56 - . . C27694 GLEAN mRNA 2532 3020 1 - . ID=CGI_10000376; scaffold1179 WUBlastX LINE_L1-Tx1 1214063 1214206 55 + . . scaffold1179 GLEAN mRNA 1211321 1215235 0.457085 - . ID=CGI_10027415; scaffold1213 WUBlastX LINE_L1-Tx1 414781 415176 209 - . . scaffold1213 GLEAN mRNA 408300 423198 0.400191 - . ID=CGI_10027450; scaffold368 WUBlastX LTR_Gypsy-Cigr 487831 489936 1059 - . . scaffold368 GLEAN mRNA 456734 493375 0.348019 + . ID=CGI_10018714; scaffold914 WUBlastX LINE_L2 384308 385525 57 + . . scaffold914 GLEAN mRNA 383322 392651 0.969071 - . ID=CGI_10018890; scaffold1448 WUBlastX LINE_RTE-X 3661 4110 229 - . . scaffold1448 GLEAN mRNA 631 18510 0.999948 + . ID=CGI_10011852; scaffold1448 WUBlastX LINE_RTE-X 4107 4262 99 - . . scaffold1448 GLEAN mRNA 631 18510 0.999948 + . ID=CGI_10011852; scaffold150 WUBlastX LTR_Pao 441258 442574 320 + . . scaffold150 GLEAN mRNA 440940 442586 0.995484 + . ID=CGI_10028609; scaffold544 WUBlastX LINE_L1 209758 209829 26 - . . scaffold544 GLEAN mRNA 202069 215253 0.999676 + . ID=CGI_10022552; scaffold579 WUBlastX LTR_Pao 213929 214195 109 + . . scaffold579 GLEAN mRNA 193436 221323 0.863149 + . ID=CGI_10011264; scaffold514 WUBlastX LTR_Gypsy 456378 456866 390 - . . scaffold514 GLEAN mRNA 444665 473776 0.661186 - . ID=CGI_10018365; scaffold4 WUBlastX LINE_L1 474878 475099 35 - . . scaffold4 GLEAN mRNA 463325 481913 0.998731 + . ID=CGI_10021180; scaffold42530 WUBlastX LINE_L2 46647 47783 426 + . . scaffold42530 GLEAN mRNA 44450 55395 0.966018 + . ID=CGI_10007161; scaffold1897 WUBlastX LINE_RTE-X 201610 201840 41 + . . scaffold1897 GLEAN mRNA 190471 249775 0.317357 - . ID=CGI_10020917; scaffold215 WUBlastX LINE_RTE-BovB 155549 155965 206 - . . scaffold215 GLEAN mRNA 149757 156902 0.354656 - . ID=CGI_10006647; scaffold215 WUBlastX LINE_RTE-BovB 156121 156411 234 - . . scaffold215 GLEAN mRNA 149757 156902 0.354656 - . ID=CGI_10006647; scaffold215 WUBlastX LINE_RTE-BovB 156479 156604 128 - . . scaffold215 GLEAN mRNA 149757 156902 0.354656 - . ID=CGI_10006647; scaffold1525 WUBlastX LINE_Penelope 56222 57349 513 + . . scaffold1525 GLEAN mRNA 22768 58796 0.21079 + . ID=CGI_10013853; scaffold242 WUBlastX LTR_Pao 78064 78513 64 + . . scaffold242 GLEAN mRNA 75832 84666 0.771995 + . ID=CGI_10007083; scaffold54 WUBlastX LTR_Gypsy 83356 83499 71 + . . scaffold54 GLEAN mRNA 79485 84388 0.939929 + . ID=CGI_10023654; scaffold305 WUBlastX DNA_hAT-Tip100 177534 178436 480 - . . scaffold305 GLEAN mRNA 172174 179381 0.995798 - . ID=CGI_10019119; scaffold305 WUBlastX DNA_hAT-Tip100 178439 178552 21 - . . scaffold305 GLEAN mRNA 172174 179381 0.995798 - . ID=CGI_10019119; scaffold305 WUBlastX DNA_hAT-Tip100 178543 178758 119 - . . scaffold305 GLEAN mRNA 172174 179381 0.995798 - . ID=CGI_10019119; scaffold88 WUBlastX LINE_L1 25561 26424 579 - . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX LINE_L1 25561 26424 579 - . . scaffold88 GLEAN mRNA 22316 33699 0.444301 - . ID=CGI_10011115; scaffold1750 WUBlastX LTR_Pao 637314 637829 174 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold1518 WUBlastX LTR_Ngaro 270637 270702 22 - . . scaffold1518 GLEAN mRNA 258241 287104 0.241996 + . ID=CGI_10017803; scaffold40638 WUBlastX LTR_Gypsy 62301 63635 296 - . . scaffold40638 GLEAN mRNA 61308 67362 0.755375 - . ID=CGI_10004287; scaffold265 WUBlastX LTR_Ngaro 67147 68214 648 - . . scaffold265 GLEAN mRNA 64182 72514 0.643455 - . ID=CGI_10003429; scaffold37558 WUBlastX LTR_Gypsy 9352 9825 64 - . . scaffold37558 GLEAN mRNA 5319 20987 0.499838 + . ID=CGI_10002409; scaffold1024 WUBlastX LTR_Gypsy 92033 92335 22 - . . scaffold1024 GLEAN mRNA 87362 100892 0.557329 - . ID=CGI_10028520; scaffold43940 WUBlastX RC_Helitron 79103 79426 34 - . . scaffold43940 GLEAN mRNA 65972 85108 0.808068 + . ID=CGI_10014150; scaffold1199 WUBlastX RC_Helitron 46728 46946 48 - . . scaffold1199 GLEAN mRNA 46410 49371 0.592263 - . ID=CGI_10005923; scaffold1024 WUBlastX DNA_Kolobok-IS4 1761728 1761964 60 - . . scaffold1024 GLEAN mRNA 1751618 1765575 0.556405 - . ID=CGI_10028585; scaffold1125 WUBlastX LINE_Penelope 296698 297153 30 - . . scaffold1125 GLEAN mRNA 258264 306646 0.367081 + . ID=CGI_10012342; scaffold1532 WUBlastX DNA_PiggyBac 607338 607589 59 - . . scaffold1532 GLEAN mRNA 606606 610636 0.502786 - . ID=CGI_10028261; scaffold392 WUBlastX LINE_L1 444383 444880 30 + . . scaffold392 GLEAN mRNA 426913 455766 0.44936 + . ID=CGI_10024218; scaffold751 WUBlastX DNA_P 94947 95144 54 + . . scaffold751 GLEAN mRNA 94947 97024 0.999415 + . ID=CGI_10017382; scaffold1036 WUBlastX LINE_L1 135395 136285 25 + . . scaffold1036 GLEAN mRNA 134621 136288 0.999413 + . ID=CGI_10019950; scaffold501 WUBlastX LTR_Gypsy 169921 170355 21 - . . scaffold501 GLEAN mRNA 159121 185490 0.79399 - . ID=CGI_10027502; scaffold1096 WUBlastX DNA_TcMar-Fot1 127259 127393 71 + . . scaffold1096 GLEAN mRNA 127172 128535 0.984969 + . ID=CGI_10006456; C30118 WUBlastX LINE_Rex-Babar 633 751 32 + . . C30118 GLEAN mRNA 633 6001 0.543283 + . ID=CGI_10000594; scaffold1163 WUBlastX LINE_RTE-X 198389 198616 43 - . . scaffold1163 GLEAN mRNA 183718 207332 0.990122 - . ID=CGI_10009351; scaffold107 WUBlastX LINE_RTE-X 496849 496880 29 + . . scaffold107 GLEAN mRNA 482349 496880 0.436429 + . ID=CGI_10025056; scaffold70 WUBlastX LINE_RTE-X 515353 515790 22 - . . scaffold70 GLEAN mRNA 505766 521255 0.349382 + . ID=CGI_10024775; scaffold70 WUBlastX LINE_RTE-X 515353 515790 22 - . . scaffold70 GLEAN mRNA 501356 529120 0.998611 - . ID=CGI_10024774; scaffold507 WUBlastX LINE_RTE-X 268945 269163 48 - . . scaffold507 GLEAN mRNA 254357 273838 0.999949 - . ID=CGI_10019093; scaffold753 WUBlastX LINE_CR1 316110 316721 33 - . . scaffold753 GLEAN mRNA 307757 329663 0.499275 + . ID=CGI_10014210; scaffold36390 WUBlastX LTR_Gypsy 5527 5805 90 + . . scaffold36390 GLEAN mRNA 5206 5853 0.999984 + . ID=CGI_10001879; scaffold301 WUBlastX LTR_Gypsy-Cigr 1141876 1142112 86 - . . scaffold301 GLEAN mRNA 1141876 1142190 0.998748 - . ID=CGI_10026747; scaffold1399 WUBlastX LTR_DIRS 120730 121098 84 - . . scaffold1399 GLEAN mRNA 95731 121782 0.470575 + . ID=CGI_10007050; scaffold40556 WUBlastX LTR_Gypsy 88739 88975 64 - . . scaffold40556 GLEAN mRNA 88418 88975 0.618241 - . ID=CGI_10004254; scaffold1873 WUBlastX LINE_RTE-X 179249 179443 45 - . . scaffold1873 GLEAN mRNA 176185 193037 0.487855 + . ID=CGI_10009300; scaffold43842 WUBlastX DNA_IS4EU 249984 250238 69 + . . scaffold43842 GLEAN mRNA 222782 252762 0.997279 - . ID=CGI_10013106; scaffold43842 WUBlastX DNA_IS4EU 249984 250238 69 + . . scaffold43842 GLEAN mRNA 238630 263260 0.526049 + . ID=CGI_10013107; scaffold44008 WUBlastX DNA_Harbinger 35492 35608 40 + . . scaffold44008 GLEAN mRNA 35492 36178 0.537986 + . ID=CGI_10015280; scaffold44008 WUBlastX DNA_Harbinger 35927 36124 34 + . . scaffold44008 GLEAN mRNA 35492 36178 0.537986 + . ID=CGI_10015280; scaffold867 WUBlastX LINE_R2 494887 494913 22 + . . scaffold867 GLEAN mRNA 490506 500925 0.812964 - . ID=CGI_10026232; scaffold1255 WUBlastX LTR_Gypsy 392466 392657 22 + . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold1255 WUBlastX LTR_Gypsy 392693 393196 30 + . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold36768 WUBlastX LINE_L1 36685 37359 59 + . . scaffold36768 GLEAN mRNA 29335 37620 1 + . ID=CGI_10002113; scaffold140 WUBlastX LINE_L1 365916 366404 87 - . . scaffold140 GLEAN mRNA 344940 369951 0.671174 - . ID=CGI_10020136; scaffold354 WUBlastX LTR_Gypsy 48741 48845 21 + . . scaffold354 GLEAN mRNA 46016 92159 0.140194 - . ID=CGI_10025696; scaffold317 WUBlastX DNA_MuDR 500226 500601 116 - . . scaffold317 GLEAN mRNA 500226 523403 0.473225 - . ID=CGI_10019359; scaffold38750 WUBlastX LINE_RTE-X 17041 17307 106 + . . scaffold38750 GLEAN mRNA 15091 19690 0.999995 + . ID=CGI_10002957; scaffold1067 WUBlastX DNA_Sola 102554 102739 34 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold1210 WUBlastX LINE_RTE-X 112577 112903 76 + . . scaffold1210 GLEAN mRNA 93719 132019 0.550359 - . ID=CGI_10014599; scaffold1785 WUBlastX LINE_I 21339 21446 21 + . . scaffold1785 GLEAN mRNA 6322 29997 0.294917 - . ID=CGI_10024349; scaffold40368 WUBlastX LINE_Penelope 5300 5653 126 - . . scaffold40368 GLEAN mRNA 2910 21310 0.999993 + . ID=CGI_10004043; scaffold40556 WUBlastX LTR_Ngaro 11417 11611 108 - . . scaffold40556 GLEAN mRNA 9810 16493 0.715629 - . ID=CGI_10004250; scaffold625 WUBlastX LINE_L1-Tx1 669048 669491 109 - . . scaffold625 GLEAN mRNA 660953 675922 0.820405 - . ID=CGI_10023430; scaffold962 WUBlastX LINE_RTE-X 1086495 1086956 135 - . . scaffold962 GLEAN mRNA 1078349 1089726 1 - . ID=CGI_10027683; scaffold1512 WUBlastX LTR_Gypsy 108227 108421 83 - . . scaffold1512 GLEAN mRNA 103804 112617 0.999842 - . ID=CGI_10019851; scaffold1512 WUBlastX LTR_Gypsy 108542 109861 1264 - . . scaffold1512 GLEAN mRNA 103804 112617 0.999842 - . ID=CGI_10019851; scaffold398 WUBlastX LINE_L2-Hydra 2935 4602 46 - . . scaffold398 GLEAN mRNA 896 15325 0.911211 + . ID=CGI_10004360; scaffold1652 WUBlastX RC_Helitron 226018 227061 137 - . . scaffold1652 GLEAN mRNA 224467 242523 0.999676 - . ID=CGI_10012393; scaffold374 WUBlastX LINE_RTE-BovB 405976 406953 158 + . . scaffold374 GLEAN mRNA 405430 416354 0.985153 - . ID=CGI_10018724; scaffold1352 WUBlastX LINE_L1-Tx1 217174 217395 133 - . . scaffold1352 GLEAN mRNA 212932 230879 0.392918 - . ID=CGI_10018413; scaffold1825 WUBlastX LTR_Gypsy 58733 62929 2299 - . . scaffold1825 GLEAN mRNA 52552 63242 0.967566 - . ID=CGI_10011138; scaffold535 WUBlastX LINE_L1-Tx1 166325 169327 1379 + . . scaffold535 GLEAN mRNA 158110 184507 0.999251 + . ID=CGI_10020284; scaffold698 WUBlastX LINE_L1-Tx1 216460 217080 260 - . . scaffold698 GLEAN mRNA 215942 226142 0.793097 + . ID=CGI_10020736; scaffold226 WUBlastX LTR_Ngaro 469530 470489 214 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold43200 WUBlastX DNA_TcMar-Tc1 124591 125613 226 - . . scaffold43200 GLEAN mRNA 98578 129296 0.928438 + . ID=CGI_10009329; scaffold544 WUBlastX DNA_TcMar-Tc1 251639 252619 137 - . . scaffold544 GLEAN mRNA 248926 297755 0.519606 - . ID=CGI_10022553; scaffold1448 WUBlastX LTR_Ngaro 29763 29834 45 - . . scaffold1448 GLEAN mRNA 28289 31614 0.624176 - . ID=CGI_10011853; scaffold955 WUBlastX LINE_RTE-BovB 118543 118683 45 - . . scaffold955 GLEAN mRNA 102883 129964 0.99714 + . ID=CGI_10009853; scaffold955 WUBlastX LINE_RTE-BovB 119033 119596 47 - . . scaffold955 GLEAN mRNA 102883 129964 0.99714 + . ID=CGI_10009853; scaffold955 WUBlastX LINE_RTE-BovB 120020 120190 89 - . . scaffold955 GLEAN mRNA 102883 129964 0.99714 + . ID=CGI_10009853; scaffold1670 WUBlastX LINE_CR1 399647 399868 103 + . . scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; scaffold1376 WUBlastX LINE_L1 44465 44689 46 - . . scaffold1376 GLEAN mRNA 39109 52499 0.502849 - . ID=CGI_10002795; scaffold35438 WUBlastX LINE_L1 9293 9460 20 - . . scaffold35438 GLEAN mRNA 3327 22372 0.999028 - . ID=CGI_10001514; scaffold1 WUBlastX DNA_TcMar-Tc1 252414 252710 139 - . . scaffold1 GLEAN mRNA 239740 257002 0.998426 - . ID=CGI_10013473; scaffold1 WUBlastX DNA_TcMar-Tc1 253069 253344 29 - . . scaffold1 GLEAN mRNA 239740 257002 0.998426 - . ID=CGI_10013473; scaffold1578 WUBlastX LTR_Pao 66526 66654 74 + . . scaffold1578 GLEAN mRNA 44226 72498 0.998909 - . ID=CGI_10008160; scaffold1703 WUBlastX DNA_Maverick 222114 222893 59 - . . scaffold1703 GLEAN mRNA 215396 234951 0.309503 + . ID=CGI_10023049; scaffold1209 WUBlastX LTR_Gypsy 117200 118390 461 - . . scaffold1209 GLEAN mRNA 106847 123923 0.38603 - . ID=CGI_10007967; scaffold1119 WUBlastX LTR_Gypsy 170581 171435 442 - . . scaffold1119 GLEAN mRNA 141381 182559 0.993006 - . ID=CGI_10009605; scaffold43008 WUBlastX LINE_L1 84265 84522 24 - . . scaffold43008 GLEAN mRNA 78684 87806 0.543465 - . ID=CGI_10008462; scaffold31 WUBlastX DNA_Maverick 209063 209113 24 - . . scaffold31 GLEAN mRNA 202867 210562 0.991871 - . ID=CGI_10013561; scaffold633 WUBlastX LINE_L1-Tx1 20207 21493 425 + . . scaffold633 GLEAN mRNA 18015 46855 0.77454 - . ID=CGI_10004268; scaffold43686 WUBlastX LINE_CR1-L2 17593 17871 60 - . . scaffold43686 GLEAN mRNA 15165 50110 0.498897 + . ID=CGI_10011753; scaffold162 WUBlastX LINE_RTE-X 54515 55552 309 + . . scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; scaffold41660 WUBlastX LINE_L1-Tx1 113202 113543 151 - . . scaffold41660 GLEAN mRNA 108736 121603 0.999676 + . ID=CGI_10005401; scaffold41660 WUBlastX LINE_L1-Tx1 113831 114370 240 - . . scaffold41660 GLEAN mRNA 108736 121603 0.999676 + . ID=CGI_10005401; scaffold41660 WUBlastX LINE_L1-Tx1 114369 114926 263 - . . scaffold41660 GLEAN mRNA 108736 121603 0.999676 + . ID=CGI_10005401; scaffold22 WUBlastX LTR_Gypsy 935539 936081 27 - . . scaffold22 GLEAN mRNA 924261 941065 0.999814 - . ID=CGI_10028884; scaffold1851 WUBlastX LTR_Gypsy 102905 104500 910 + . . scaffold1851 GLEAN mRNA 98297 105350 0.387171 - . ID=CGI_10005104; scaffold378 WUBlastX LINE_L1-Tx1 243441 244601 837 - . . scaffold378 GLEAN mRNA 222180 244864 0.996816 + . ID=CGI_10017641; scaffold773 WUBlastX LTR_Gypsy 10324 10494 23 - . . scaffold773 GLEAN mRNA 9303 18869 0.52374 - . ID=CGI_10011341; scaffold42236 WUBlastX DNA_hAT 127381 127524 47 + . . scaffold42236 GLEAN mRNA 112501 136266 0.999117 + . ID=CGI_10006406; scaffold1896 WUBlastX DNA_Crypton 386345 386719 59 - . . scaffold1896 GLEAN mRNA 382396 395686 0.990814 - . ID=CGI_10019649; scaffold1194 WUBlastX LINE_I 3293 3478 23 - . . scaffold1194 GLEAN mRNA 3134 3478 0.999661 - . ID=CGI_10001327; scaffold867 WUBlastX LINE_L1 3511 3978 29 + . . scaffold867 GLEAN mRNA 3265 13655 0.999351 + . ID=CGI_10026210; scaffold1817 WUBlastX LINE_L1-Tx1 17640 18032 45 + . . scaffold1817 GLEAN mRNA 9897 44966 0.453567 - . ID=CGI_10005250; scaffold204 WUBlastX DNA_Kolobok-Hyd 853262 853729 28 - . . scaffold204 GLEAN mRNA 840254 857007 0.756652 + . ID=CGI_10026136; scaffold1259 WUBlastX LINE_L2 13010 13333 46 + . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold1132 WUBlastX DNA_MuDR 106346 106558 43 - . . scaffold1132 GLEAN mRNA 105539 106657 0.995556 - . ID=CGI_10023312; scaffold507 WUBlastX LINE_Penelope 354607 355149 42 + . . scaffold507 GLEAN mRNA 353542 355725 0.986298 + . ID=CGI_10019097; scaffold62 WUBlastX LINE_RTE-BovB 299576 299725 21 - . . scaffold62 GLEAN mRNA 299267 303352 0.993887 - . ID=CGI_10015717; scaffold793 WUBlastX LINE_Penelope 71678 71953 42 + . . scaffold793 GLEAN mRNA 61685 72905 0.384935 + . ID=CGI_10010892; scaffold1411 WUBlastX LINE_RTE-X 80049 80375 58 + . . scaffold1411 GLEAN mRNA 68337 88337 0.750194 - . ID=CGI_10009186; scaffold885 WUBlastX LINE_RTE-BovB 504954 505181 66 + . . scaffold885 GLEAN mRNA 501162 507823 1 + . ID=CGI_10025210; C32512 WUBlastX LINE_RTE-X 6405 6641 53 + . . C32512 GLEAN mRNA 877 9878 0.651135 + . ID=CGI_10000906; scaffold617 WUBlastX DNA_hAT 128440 128769 69 - . . scaffold617 GLEAN mRNA 125086 132906 0.990104 - . ID=CGI_10012725; scaffold469 WUBlastX LINE_CR1-L2 928046 928261 44 + . . scaffold469 GLEAN mRNA 925100 941633 0.564574 + . ID=CGI_10024703; scaffold1715 WUBlastX LINE_CR1 337542 337790 28 - . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold950 WUBlastX LINE_L2 235216 235308 39 - . . scaffold950 GLEAN mRNA 224684 252187 0.638871 - . ID=CGI_10022925; scaffold912 WUBlastX LINE_L1 36314 36430 101 - . . scaffold912 GLEAN mRNA 34749 48869 0.492255 - . ID=CGI_10002926; scaffold1138 WUBlastX LINE_L2 192030 192154 35 - . . scaffold1138 GLEAN mRNA 183755 192154 0.999676 - . ID=CGI_10015373; scaffold934 WUBlastX LTR_DIRS 264246 264545 84 + . . scaffold934 GLEAN mRNA 262254 282098 1 - . ID=CGI_10015446; scaffold41346 WUBlastX RC_Helitron 33407 33772 89 - . . scaffold41346 GLEAN mRNA 32052 37243 0.990251 - . ID=CGI_10004999; scaffold1301 WUBlastX DNA_MuDR 796035 796352 86 - . . scaffold1301 GLEAN mRNA 795655 798380 0.702584 - . ID=CGI_10027744; scaffold1301 WUBlastX DNA_MuDR 796035 796352 86 - . . scaffold1301 GLEAN mRNA 781075 819646 0.518044 + . ID=CGI_10027743; scaffold343 WUBlastX LINE_L2 612651 613325 63 - . . scaffold343 GLEAN mRNA 606783 616118 0.949663 + . ID=CGI_10021767; scaffold39268 WUBlastX LINE_L2 17873 18445 101 + . . scaffold39268 GLEAN mRNA 16420 27530 0.768779 - . ID=CGI_10003274; scaffold36202 WUBlastX LTR_Ngaro 20871 21314 85 - . . scaffold36202 GLEAN mRNA 3245 23503 0.999232 + . ID=CGI_10001812; scaffold1032 WUBlastX LINE_L1 707458 707513 20 + . . scaffold1032 GLEAN mRNA 707458 710864 0.590104 - . ID=CGI_10021705; scaffold365 WUBlastX LINE_RTE-X 186678 187031 94 - . . scaffold365 GLEAN mRNA 162342 187868 0.996603 - . ID=CGI_10022722; scaffold113 WUBlastX LINE_RTE-X 54662 54838 82 + . . scaffold113 GLEAN mRNA 53720 57757 0.859957 + . ID=CGI_10021283; scaffold321 WUBlastX LTR_Gypsy 478260 479111 175 + . . scaffold321 GLEAN mRNA 474717 485753 0.439448 - . ID=CGI_10020812; scaffold321 WUBlastX LTR_Gypsy 479129 479572 463 + . . scaffold321 GLEAN mRNA 474717 485753 0.439448 - . ID=CGI_10020812; scaffold601 WUBlastX DNA_IS4EU 489268 489465 99 + . . scaffold601 GLEAN mRNA 483357 489501 0.678522 + . ID=CGI_10026830; scaffold1093 WUBlastX LINE_Penelope 404482 404580 41 - . . scaffold1093 GLEAN mRNA 404049 410721 0.987785 + . ID=CGI_10019807; scaffold1093 WUBlastX LINE_Penelope 405408 405581 106 - . . scaffold1093 GLEAN mRNA 404049 410721 0.987785 + . ID=CGI_10019807; scaffold1097 WUBlastX LINE_RTE-X 796960 797379 22 + . . scaffold1097 GLEAN mRNA 796138 800546 1 + . ID=CGI_10024550; scaffold41884 WUBlastX LINE_RTE-X 57940 58461 111 + . . scaffold41884 GLEAN mRNA 50798 64593 0.351321 + . ID=CGI_10005780; scaffold485 WUBlastX LINE_RTE-BovB 738404 738544 50 + . . scaffold485 GLEAN mRNA 737910 749557 0.981296 + . ID=CGI_10024192; scaffold485 WUBlastX LINE_RTE-BovB 738404 738544 50 + . . scaffold485 GLEAN mRNA 734638 750215 1 - . ID=CGI_10024191; scaffold962 WUBlastX LINE_L1-Tx1 1093052 1095373 978 + . . scaffold962 GLEAN mRNA 1090381 1096840 0.999611 + . ID=CGI_10027684; scaffold1831 WUBlastX LINE_L1-Tx1 34296 34895 160 + . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_L1-Tx1 34296 34895 160 + . . scaffold1831 GLEAN mRNA 30321 42527 0.595655 - . ID=CGI_10002913; scaffold90 WUBlastX LTR_Gypsy 136819 136902 23 + . . scaffold90 GLEAN mRNA 135730 142790 0.547035 + . ID=CGI_10015161; scaffold43182 WUBlastX LTR_Gypsy 167708 167899 32 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold1574 WUBlastX LTR_Gypsy 453155 453481 48 + . . scaffold1574 GLEAN mRNA 452128 459537 0.999957 + . ID=CGI_10016335; scaffold1616 WUBlastX LINE_Penelope 60175 60624 124 - . . scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; scaffold1714 WUBlastX LINE_L2 312426 312563 51 - . . scaffold1714 GLEAN mRNA 306589 325335 0.999557 + . ID=CGI_10013680; scaffold964 WUBlastX LTR_Ngaro 225423 225890 157 + . . scaffold964 GLEAN mRNA 212100 240231 0.999794 - . ID=CGI_10009735; scaffold298 WUBlastX LINE_L2 519156 519536 170 + . . scaffold298 GLEAN mRNA 501146 527362 0.635848 + . ID=CGI_10018836; scaffold191 WUBlastX LINE_L1-Tx1 556121 556921 444 + . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX LINE_L1-Tx1 556999 557226 47 + . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX LINE_L1-Tx1 557581 558756 691 + . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX LINE_L1-Tx1 558734 559573 174 + . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold1086 WUBlastX LINE_RTE-X 102103 102522 206 - . . scaffold1086 GLEAN mRNA 71811 104849 0.15447 + . ID=CGI_10021931; scaffold164 WUBlastX LINE_RTE-X 167392 167961 168 + . . scaffold164 GLEAN mRNA 165506 168961 1 - . ID=CGI_10021852; C30458 WUBlastX LINE_L1-Tx1 5579 5905 57 + . . C30458 GLEAN mRNA 986 6010 1 - . ID=CGI_10000625; scaffold1203 WUBlastX LINE_RTE-X 144260 144346 21 + . . scaffold1203 GLEAN mRNA 143882 144388 0.648541 + . ID=CGI_10010428; scaffold794 WUBlastX DNA_Crypton 36893 37609 177 - . . scaffold794 GLEAN mRNA 34460 38499 0.999922 - . ID=CGI_10017134; scaffold425 WUBlastX DNA_IS4EU 129060 129560 278 + . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold305 WUBlastX LTR_Gypsy-Cigr 128397 129095 202 - . . scaffold305 GLEAN mRNA 114232 133246 0.986225 - . ID=CGI_10019117; scaffold42674 WUBlastX LINE_L1-Tx1 88622 89416 168 + . . scaffold42674 GLEAN mRNA 75951 89776 0.488756 + . ID=CGI_10007441; scaffold160 WUBlastX LINE_RTE-X 180788 181768 214 - . . scaffold160 GLEAN mRNA 177779 208943 0.919015 - . ID=CGI_10020578; scaffold603 WUBlastX LINE_L1 20352 20453 23 - . . scaffold603 GLEAN mRNA 13948 26603 0.533291 - . ID=CGI_10009894; scaffold1352 WUBlastX LINE_RTE-X 402330 402494 49 + . . scaffold1352 GLEAN mRNA 400458 408667 0.333165 + . ID=CGI_10018425; scaffold894 WUBlastX DNA_hAT-Tip100 152465 153079 303 - . . scaffold894 GLEAN mRNA 150089 157261 0.544755 - . ID=CGI_10008547; scaffold146 WUBlastX LINE_L1-Tx1 624787 625665 118 - . . scaffold146 GLEAN mRNA 617556 637446 0.912862 - . ID=CGI_10024915; scaffold38978 WUBlastX DNA_Harbinger 8435 8779 164 - . . scaffold38978 GLEAN mRNA 443 10686 0.499437 + . ID=CGI_10003126; scaffold38978 WUBlastX DNA_Harbinger 8435 8521 164 - . . scaffold38978 GLEAN mRNA 7539 8521 0.655792 - . ID=CGI_10003127; scaffold569 WUBlastX LINE_L2 152800 153687 442 - . . scaffold569 GLEAN mRNA 133999 168874 0.674144 + . ID=CGI_10009498; scaffold1307 WUBlastX DNA_IS4EU 11163 11291 31 + . . scaffold1307 GLEAN mRNA 6251 45653 0.745308 + . ID=CGI_10023739; scaffold209 WUBlastX DNA_TcMar-Tc1 261775 262212 313 + . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold286 WUBlastX DNA_TcMar-Tc1 75998 76087 37 - . . scaffold286 GLEAN mRNA 70101 79780 0.990881 + . ID=CGI_10015958; scaffold286 WUBlastX DNA_TcMar-Tc1 76530 76964 107 - . . scaffold286 GLEAN mRNA 70101 79780 0.990881 + . ID=CGI_10015958; scaffold1214 WUBlastX LTR_Ngaro 250023 250439 235 - . . scaffold1214 GLEAN mRNA 241265 253884 0.274712 + . ID=CGI_10015480; scaffold1214 WUBlastX LTR_Ngaro 250760 251122 162 - . . scaffold1214 GLEAN mRNA 241265 253884 0.274712 + . ID=CGI_10015480; scaffold1532 WUBlastX LTR_Gypsy-Troyk 1112151 1112486 151 - . . scaffold1532 GLEAN mRNA 1112130 1112501 0.979648 - . ID=CGI_10028281; scaffold1480 WUBlastX LINE_R2 156975 157637 95 - . . scaffold1480 GLEAN mRNA 145751 160551 0.693127 - . ID=CGI_10008638; scaffold867 WUBlastX DNA_TcMar-Tc1 255586 255795 145 + . . scaffold867 GLEAN mRNA 253182 264678 0.938203 - . ID=CGI_10026215; scaffold1862 WUBlastX LINE_L1-Tx1 194711 195166 187 + . . scaffold1862 GLEAN mRNA 170077 209119 0.953083 - . ID=CGI_10021893; scaffold1806 WUBlastX LTR_Gypsy 84665 86323 474 - . . scaffold1806 GLEAN mRNA 70668 89122 0.54485 - . ID=CGI_10006158; scaffold433 WUBlastX LTR_Ngaro 338540 339715 821 + . . scaffold433 GLEAN mRNA 321041 347867 0.999675 + . ID=CGI_10027064; scaffold43686 WUBlastX LINE_L2 175018 175206 70 - . . scaffold43686 GLEAN mRNA 172665 193661 0.978405 - . ID=CGI_10011758; scaffold36202 WUBlastX LTR_Ngaro 20747 20965 49 - . . scaffold36202 GLEAN mRNA 3245 23503 0.999232 + . ID=CGI_10001812; scaffold43782 WUBlastX LTR_DIRS 144103 144312 53 + . . scaffold43782 GLEAN mRNA 143682 159372 0.674769 + . ID=CGI_10012367; scaffold678 WUBlastX LTR_Gypsy 815654 815860 67 + . . scaffold678 GLEAN mRNA 797592 830433 0.957761 + . ID=CGI_10026382; scaffold316 WUBlastX LTR_Gypsy 16790 17140 40 + . . scaffold316 GLEAN mRNA 23 25141 0.301379 - . ID=CGI_10001602; scaffold1304 WUBlastX LINE_L1 31695 31904 39 - . . scaffold1304 GLEAN mRNA 18393 35543 1 + . ID=CGI_10003862; scaffold413 WUBlastX LINE_L1 10697 10900 22 - . . scaffold413 GLEAN mRNA 9716 19114 0.940957 - . ID=CGI_10022791; C26860 WUBlastX DNA_TcMar-Tc1 55 150 34 + . . C26860 GLEAN mRNA 25 285 0.999372 + . ID=CGI_10000331; scaffold208 WUBlastX DNA_TcMar-Marin 116088 116228 31 + . . scaffold208 GLEAN mRNA 115161 117315 1 - . ID=CGI_10010026; scaffold502 WUBlastX LINE_Penelope 790770 791084 52 - . . scaffold502 GLEAN mRNA 778874 801211 0.91725 + . ID=CGI_10024346; scaffold43660 WUBlastX LINE_Penelope 227276 227392 46 + . . scaffold43660 GLEAN mRNA 226088 237077 1 - . ID=CGI_10011669; scaffold1134 WUBlastX LINE_RTE-BovB 75491 75637 55 - . . scaffold1134 GLEAN mRNA 49795 76853 0.922734 + . ID=CGI_10004507; scaffold39804 WUBlastX LINE_RTE-BovB 52276 52467 71 - . . scaffold39804 GLEAN mRNA 45401 55574 0.999999 - . ID=CGI_10003620; scaffold483 WUBlastX LINE_RTE-X 160705 160911 24 - . . scaffold483 GLEAN mRNA 152695 165153 0.98402 - . ID=CGI_10007752; scaffold544 WUBlastX LINE_RTE-X 562425 562577 41 - . . scaffold544 GLEAN mRNA 559869 574687 0.998045 - . ID=CGI_10022574; scaffold43660 WUBlastX LINE_L1-Tx1 170164 170556 31 - . . scaffold43660 GLEAN mRNA 158768 189009 0.999991 - . ID=CGI_10011666; scaffold890 WUBlastX LINE_CR1 290613 290780 70 - . . scaffold890 GLEAN mRNA 287435 312343 0.999997 - . ID=CGI_10014480; scaffold54 WUBlastX DNA_Harbinger 778926 779090 57 + . . scaffold54 GLEAN mRNA 778899 780884 0.987135 + . ID=CGI_10023696; scaffold43242 WUBlastX LTR_ERV1 20616 20634 45 - . . scaffold43242 GLEAN mRNA 20616 21020 0.593326 - . ID=CGI_10009542; scaffold1143 WUBlastX DNA_IS4EU 123305 123694 96 - . . scaffold1143 GLEAN mRNA 121955 124624 0.796524 - . ID=CGI_10009141; scaffold210 WUBlastX DNA_hAT-Ac 358283 358753 80 - . . scaffold210 GLEAN mRNA 357624 369316 1 + . ID=CGI_10015899; scaffold1729 WUBlastX LTR_Ngaro 197260 197319 35 + . . scaffold1729 GLEAN mRNA 196724 202355 0.822484 + . ID=CGI_10008492; scaffold102 WUBlastX LTR_Ngaro 643973 644107 48 + . . scaffold102 GLEAN mRNA 643973 666734 0.499984 + . ID=CGI_10028445; scaffold101 WUBlastX LTR_Gypsy 380463 381101 109 - . . scaffold101 GLEAN mRNA 372430 382001 0.551916 - . ID=CGI_10021649; scaffold606 WUBlastX LTR_Gypsy 294596 294633 27 + . . scaffold606 GLEAN mRNA 293884 294633 0.55655 + . ID=CGI_10012953; scaffold168 WUBlastX DNA_MuDR 179317 179649 71 - . . scaffold168 GLEAN mRNA 178276 183101 0.805771 - . ID=CGI_10025586; scaffold493 WUBlastX LINE_RTE-X 36208 36336 79 + . . scaffold493 GLEAN mRNA 33582 40988 0.999595 + . ID=CGI_10007246; scaffold186 WUBlastX DNA_TcMar-Tc2 230631 231107 107 + . . scaffold186 GLEAN mRNA 224356 240570 0.99998 + . ID=CGI_10012615; scaffold186 WUBlastX DNA_TcMar-Tc2 230631 231107 107 + . . scaffold186 GLEAN mRNA 224585 255140 0.999343 - . ID=CGI_10012616; scaffold43388 WUBlastX LINE_L1-Tx1 229844 229906 20 + . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold363 WUBlastX DNA_IS4EU 513339 513500 52 - . . scaffold363 GLEAN mRNA 509476 539448 0.543882 + . ID=CGI_10019312; scaffold177 WUBlastX LINE_L1 317031 317732 80 + . . scaffold177 GLEAN mRNA 302189 324161 0.999349 - . ID=CGI_10016066; scaffold43526 WUBlastX LINE_RTE-X 37356 37619 82 + . . scaffold43526 GLEAN mRNA 36766 62971 0.985699 + . ID=CGI_10010784; scaffold226 WUBlastX LTR_Ngaro 467584 467763 67 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold40928 WUBlastX LINE_CR1 41005 41241 76 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold950 WUBlastX DNA_TcMar-Tc1 350395 350673 73 - . . scaffold950 GLEAN mRNA 320484 362683 0.981503 - . ID=CGI_10022928; scaffold1888 WUBlastX DNA_TcMar-Tigge 51546 51608 43 + . . scaffold1888 GLEAN mRNA 49981 53887 0.998764 + . ID=CGI_10013292; scaffold1179 WUBlastX LINE_L1 939636 939812 122 + . . scaffold1179 GLEAN mRNA 936280 947260 0.224969 + . ID=CGI_10027393; scaffold156 WUBlastX DNA_Kolobok-Hyd 688254 688721 76 - . . scaffold156 GLEAN mRNA 669682 693584 0.721042 - . ID=CGI_10026516; scaffold72 WUBlastX DNA_TcMar-Marin 209622 210272 112 + . . scaffold72 GLEAN mRNA 207105 213716 0.998726 - . ID=CGI_10017841; scaffold482 WUBlastX LINE_RTE-X 112657 112737 29 - . . scaffold482 GLEAN mRNA 106791 115709 0.887892 + . ID=CGI_10010996; scaffold854 WUBlastX LINE_L1 597843 598214 20 + . . scaffold854 GLEAN mRNA 593945 607422 0.999735 + . ID=CGI_10022261; scaffold1836 WUBlastX LTR_Gypsy 1025530 1026786 1012 - . . scaffold1836 GLEAN mRNA 1025204 1064430 0.980298 - . ID=CGI_10026321; scaffold1734 WUBlastX LINE_CR1 153676 154467 83 - . . scaffold1734 GLEAN mRNA 152020 160994 0.46186 + . ID=CGI_10010541; scaffold43302 WUBlastX DNA_IS4EU 15967 16257 92 + . . scaffold43302 GLEAN mRNA 6372 24073 0.277786 - . ID=CGI_10009755; scaffold1174 WUBlastX DNA_hAT-Blackja 1076124 1076351 86 - . . scaffold1174 GLEAN mRNA 1072564 1077795 0.506907 + . ID=CGI_10026080; scaffold113 WUBlastX DNA_MuDR 589683 590009 136 - . . scaffold113 GLEAN mRNA 582017 590807 0.980826 - . ID=CGI_10021294; scaffold1097 WUBlastX LINE_RTE-X 797746 797889 44 + . . scaffold1097 GLEAN mRNA 796138 800546 1 + . ID=CGI_10024550; scaffold1188 WUBlastX LINE_L2 656507 656950 50 - . . scaffold1188 GLEAN mRNA 648038 660238 0.573951 - . ID=CGI_10025493; scaffold43894 WUBlastX LINE_RTE-X 268229 268855 115 + . . scaffold43894 GLEAN mRNA 264402 278141 0.811559 - . ID=CGI_10013892; scaffold1518 WUBlastX LINE_L2 285585 285983 100 + . . scaffold1518 GLEAN mRNA 258241 287104 0.241996 + . ID=CGI_10017803; scaffold1715 WUBlastX LINE_L2 429651 430019 158 + . . scaffold1715 GLEAN mRNA 429651 430214 0.999994 + . ID=CGI_10019676; scaffold1631 WUBlastX LTR_Pao 167350 168267 610 - . . scaffold1631 GLEAN mRNA 163195 172842 0.969546 - . ID=CGI_10007204; scaffold1036 WUBlastX DNA_Maverick 596484 596867 152 + . . scaffold1036 GLEAN mRNA 594409 600469 0.995654 - . ID=CGI_10019975; scaffold351 WUBlastX DNA_Sola 313573 314778 108 + . . scaffold351 GLEAN mRNA 306790 315103 0.777625 + . ID=CGI_10022605; scaffold492 WUBlastX LINE_L1-Tx1 179837 180724 167 + . . scaffold492 GLEAN mRNA 179108 189466 1 - . ID=CGI_10024811; scaffold524 WUBlastX LINE_CR1-L2 453532 453888 153 - . . scaffold524 GLEAN mRNA 445295 466161 1 + . ID=CGI_10016612; scaffold38626 WUBlastX LINE_CR1 27902 27976 27 - . . scaffold38626 GLEAN mRNA 19577 33145 1 - . ID=CGI_10002868; scaffold36526 WUBlastX LINE_L1-Tx1 21624 22049 172 - . . scaffold36526 GLEAN mRNA 10575 29087 0.999676 + . ID=CGI_10002008; scaffold1066 WUBlastX LTR_Gypsy 173189 174151 342 + . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold1532 WUBlastX LTR_Gypsy 393767 394531 83 + . . scaffold1532 GLEAN mRNA 391874 403369 0.462643 + . ID=CGI_10028249; scaffold885 WUBlastX LINE_L1 1011058 1011726 258 + . . scaffold885 GLEAN mRNA 1005329 1048267 0.991835 - . ID=CGI_10025234; scaffold751 WUBlastX LTR_Gypsy 120645 121157 175 - . . scaffold751 GLEAN mRNA 116903 123513 0.999997 + . ID=CGI_10017386; scaffold751 WUBlastX LTR_Gypsy 121105 121443 140 - . . scaffold751 GLEAN mRNA 116903 123513 0.999997 + . ID=CGI_10017386; scaffold1788 WUBlastX DNA_Kolobok-IS4 65321 66073 312 - . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold40104 WUBlastX DNA_IS4EU 37515 37913 227 - . . scaffold40104 GLEAN mRNA 23202 39290 0.364513 - . ID=CGI_10003867; scaffold950 WUBlastX LINE_L2 391315 391680 84 - . . scaffold950 GLEAN mRNA 384027 397632 0.588964 + . ID=CGI_10022929; scaffold533 WUBlastX LINE_L2 96194 97054 449 + . . scaffold533 GLEAN mRNA 82717 99405 0.998409 - . ID=CGI_10005555; scaffold563 WUBlastX LINE_L1 509282 510442 436 + . . scaffold563 GLEAN mRNA 469996 513756 0.653133 + . ID=CGI_10019843; scaffold43116 WUBlastX LTR_Gypsy 140271 141452 723 - . . scaffold43116 GLEAN mRNA 129418 143793 1 - . ID=CGI_10008815; C31414 WUBlastX LTR_Copia 6720 6992 56 + . . C31414 GLEAN mRNA 5466 7672 0.561405 + . ID=CGI_10000746; scaffold1000 WUBlastX LINE_CR1-L2 147890 148054 65 + . . scaffold1000 GLEAN mRNA 146750 156759 0.989263 + . ID=CGI_10013075; scaffold43 WUBlastX LTR_Gypsy 378907 379056 32 + . . scaffold43 GLEAN mRNA 367668 379056 0.378374 - . ID=CGI_10021354; scaffold43396 WUBlastX DNA_Harbinger 189214 189837 25 + . . scaffold43396 GLEAN mRNA 168401 199028 0.999996 + . ID=CGI_10010150; scaffold1149 WUBlastX DNA_Harbinger 548196 548315 47 - . . scaffold1149 GLEAN mRNA 542856 548315 0.999675 - . ID=CGI_10023473; scaffold504 WUBlastX LTR_Gypsy 6120 6248 20 + . . scaffold504 GLEAN mRNA 4327 7355 1 - . ID=CGI_10016012; scaffold1424 WUBlastX LINE_I 53871 54119 22 + . . scaffold1424 GLEAN mRNA 53871 54215 0.99939 + . ID=CGI_10005350; scaffold40794 WUBlastX DNA_IS4EU 22122 22322 40 + . . scaffold40794 GLEAN mRNA 13820 26649 0.999201 - . ID=CGI_10004495; scaffold38422 WUBlastX LINE_CR1 30419 30601 40 - . . scaffold38422 GLEAN mRNA 27073 31824 0.999996 - . ID=CGI_10002764; scaffold1154 WUBlastX DNA_MuDR 400744 400845 33 - . . scaffold1154 GLEAN mRNA 400669 406858 0.774692 - . ID=CGI_10026168; scaffold1316 WUBlastX LTR_ERV1 174294 174788 31 - . . scaffold1316 GLEAN mRNA 173430 175142 0.999999 - . ID=CGI_10016298; scaffold1541 WUBlastX LTR_ERV1 222611 223153 53 + . . scaffold1541 GLEAN mRNA 222020 224610 0.981532 + . ID=CGI_10017890; scaffold1541 WUBlastX LTR_ERV1 222611 223153 53 + . . scaffold1541 GLEAN mRNA 201379 234972 0.933811 - . ID=CGI_10017888; scaffold204 WUBlastX LINE_Penelope 842437 842658 70 + . . scaffold204 GLEAN mRNA 840254 857007 0.756652 + . ID=CGI_10026136; scaffold215 WUBlastX LINE_RTE-X 146651 146794 30 - . . scaffold215 GLEAN mRNA 128263 149795 0.702348 + . ID=CGI_10006646; scaffold42788 WUBlastX DNA_TcMar-Tc1 67803 68186 32 + . . scaffold42788 GLEAN mRNA 24369 91602 0.998319 - . ID=CGI_10007754; scaffold12 WUBlastX LTR_Gypsy 340896 341039 29 + . . scaffold12 GLEAN mRNA 326477 354530 0.999321 + . ID=CGI_10018042; scaffold1885 WUBlastX LINE_I 359858 359956 28 - . . scaffold1885 GLEAN mRNA 350853 371060 0.999501 + . ID=CGI_10013905; scaffold39268 WUBlastX DNA_MuDR 63857 64090 34 + . . scaffold39268 GLEAN mRNA 61831 68309 0.898511 + . ID=CGI_10003276; scaffold867 WUBlastX LINE_L1-Tx1 254168 254353 55 + . . scaffold867 GLEAN mRNA 253182 264678 0.938203 - . ID=CGI_10026215; scaffold39900 WUBlastX LTR_ERV1 53768 54031 24 - . . scaffold39900 GLEAN mRNA 53549 54274 0.456972 - . ID=CGI_10003680; scaffold1826 WUBlastX LTR_Gypsy 41160 41411 60 + . . scaffold1826 GLEAN mRNA 39665 57424 0.756838 + . ID=CGI_10006241; scaffold806 WUBlastX LTR_DIRS 15035 15451 63 + . . scaffold806 GLEAN mRNA 6658 18169 0.934338 + . ID=CGI_10004919; scaffold1337 WUBlastX LINE_L1 281970 282722 25 - . . scaffold1337 GLEAN mRNA 281481 282728 0.999981 - . ID=CGI_10012842; scaffold1138 WUBlastX LINE_CR1 185466 185804 90 + . . scaffold1138 GLEAN mRNA 183755 192154 0.999676 - . ID=CGI_10015373; scaffold1589 WUBlastX LTR_Copia 593760 593903 23 + . . scaffold1589 GLEAN mRNA 592118 603104 0.965132 - . ID=CGI_10024122; scaffold128 WUBlastX DNA_IS4EU 56494 56793 44 + . . scaffold128 GLEAN mRNA 54342 63516 0.993133 - . ID=CGI_10021504; scaffold580 WUBlastX DNA_Harbinger 549245 549868 58 + . . scaffold580 GLEAN mRNA 548794 565173 0.999676 + . ID=CGI_10020516; scaffold40928 WUBlastX LINE_RTE-X 68906 69223 55 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold601 WUBlastX LINE_L2 374497 374562 20 + . . scaffold601 GLEAN mRNA 357849 378829 0.543194 + . ID=CGI_10026822; scaffold88 WUBlastX DNA_TcMar-Marin 19238 19399 35 - . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold775 WUBlastX DNA_Kolobok-Hyd 115529 115843 64 - . . scaffold775 GLEAN mRNA 115517 116176 0.999137 - . ID=CGI_10006091; scaffold1512 WUBlastX LTR_Gypsy 107363 107857 121 - . . scaffold1512 GLEAN mRNA 103804 112617 0.999842 - . ID=CGI_10019851; scaffold237 WUBlastX LINE_RTE-X 320258 320656 102 + . . scaffold237 GLEAN mRNA 315225 321061 0.999786 + . ID=CGI_10021581; scaffold963 WUBlastX LINE_RTE-X 63343 63657 85 - . . scaffold963 GLEAN mRNA 61192 70868 0.999999 - . ID=CGI_10015615; scaffold1703 WUBlastX LINE_RTE-X 142539 143264 91 + . . scaffold1703 GLEAN mRNA 141021 153045 0.525157 - . ID=CGI_10023043; scaffold1870 WUBlastX LINE_RTE-X 108535 108690 20 + . . scaffold1870 GLEAN mRNA 96078 123718 0.283709 - . ID=CGI_10013182; scaffold461 WUBlastX DNA_Harbinger 308211 308345 72 - . . scaffold461 GLEAN mRNA 305250 311818 1 - . ID=CGI_10020109; scaffold461 WUBlastX DNA_Harbinger 309022 309186 57 - . . scaffold461 GLEAN mRNA 305250 311818 1 - . ID=CGI_10020109; scaffold43648 WUBlastX DNA_Kolobok 236147 236326 84 + . . scaffold43648 GLEAN mRNA 231599 237776 0.973881 - . ID=CGI_10011593; scaffold43648 WUBlastX DNA_Kolobok 236620 236706 20 + . . scaffold43648 GLEAN mRNA 231599 237776 0.973881 - . ID=CGI_10011593; scaffold43634 WUBlastX DNA_Maverick 71377 71787 81 + . . scaffold43634 GLEAN mRNA 56957 73985 0.67193 + . ID=CGI_10011531; scaffold175 WUBlastX DNA_IS4EU 476804 477397 175 - . . scaffold175 GLEAN mRNA 471780 490454 0.998407 - . ID=CGI_10021334; scaffold42790 WUBlastX LINE_Penelope 186985 187767 81 - . . scaffold42790 GLEAN mRNA 181485 188091 0.999947 - . ID=CGI_10007719; scaffold676 WUBlastX LINE_RTE-X 576707 577021 66 - . . scaffold676 GLEAN mRNA 560023 599101 0.378138 + . ID=CGI_10021432; scaffold1445 WUBlastX LTR_Gypsy 249077 249253 31 - . . scaffold1445 GLEAN mRNA 238181 249253 0.990769 - . ID=CGI_10010375; scaffold42994 WUBlastX DNA_hAT 20435 21175 157 + . . scaffold42994 GLEAN mRNA 20013 30282 0.999999 + . ID=CGI_10008314; scaffold583 WUBlastX LTR_Gypsy 30194 30496 207 + . . scaffold583 GLEAN mRNA 11252 30786 0.538908 + . ID=CGI_10023603; scaffold44098 WUBlastX DNA_hAT 164861 165169 114 + . . scaffold44098 GLEAN mRNA 163319 167512 1 + . ID=CGI_10017705; scaffold44098 WUBlastX DNA_hAT 165424 165624 65 + . . scaffold44098 GLEAN mRNA 163319 167512 1 + . ID=CGI_10017705; scaffold1174 WUBlastX DNA_Kolobok-Hyd 930336 931175 185 - . . scaffold1174 GLEAN mRNA 917037 939462 0.964473 + . ID=CGI_10026072; scaffold469 WUBlastX LTR_Pao 152073 153203 813 - . . scaffold469 GLEAN mRNA 146084 157322 0.988922 - . ID=CGI_10024669; scaffold41650 WUBlastX LINE_I 3705 3839 46 - . . scaffold41650 GLEAN mRNA 2732 34982 0.998592 + . ID=CGI_10005337; scaffold508 WUBlastX LTR_Gypsy 16291 17124 195 - . . scaffold508 GLEAN mRNA 12073 17406 0.968836 - . ID=CGI_10011191; scaffold1679 WUBlastX LTR_Gypsy 28125 28622 258 - . . scaffold1679 GLEAN mRNA 27427 41298 0.999999 - . ID=CGI_10002338; scaffold43964 WUBlastX DNA_hAT 130950 131165 89 + . . scaffold43964 GLEAN mRNA 129296 131440 1 + . ID=CGI_10014642; scaffold43964 WUBlastX DNA_hAT 130672 130881 143 + . . scaffold43964 GLEAN mRNA 129296 131440 1 + . ID=CGI_10014642; scaffold1154 WUBlastX LTR_DIRS 328664 329947 131 + . . scaffold1154 GLEAN mRNA 300263 342126 0.0862783 - . ID=CGI_10026162; scaffold1087 WUBlastX LTR_Gypsy 11281 11928 267 + . . scaffold1087 GLEAN mRNA 1458 16224 0.544547 + . ID=CGI_10001183; scaffold1255 WUBlastX DNA_hAT 385091 386164 201 - . . scaffold1255 GLEAN mRNA 384695 387892 0.817334 - . ID=CGI_10018085; scaffold1255 WUBlastX DNA_hAT 385091 386164 201 - . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold1255 WUBlastX DNA_hAT 386230 386445 74 - . . scaffold1255 GLEAN mRNA 384695 387892 0.817334 - . ID=CGI_10018085; scaffold1255 WUBlastX DNA_hAT 386230 386445 74 - . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold42674 WUBlastX LINE_L1 89427 89645 45 + . . scaffold42674 GLEAN mRNA 75951 89776 0.488756 + . ID=CGI_10007441; scaffold1009 WUBlastX DNA_hAT-Tip100 423417 424004 145 + . . scaffold1009 GLEAN mRNA 414066 425148 0.992384 - . ID=CGI_10028732; scaffold41834 WUBlastX DNA_P 50050 51366 225 - . . scaffold41834 GLEAN mRNA 48075 59157 0.346565 + . ID=CGI_10005704; scaffold40172 WUBlastX LINE_L1-Tx1 12927 13469 58 + . . scaffold40172 GLEAN mRNA 6995 45177 0.895984 + . ID=CGI_10003930; scaffold610 WUBlastX LTR_Gypsy 567206 568390 314 + . . scaffold610 GLEAN mRNA 561259 570035 0.686247 - . ID=CGI_10021130; scaffold1800 WUBlastX LINE_L2 107013 107243 172 + . . scaffold1800 GLEAN mRNA 94548 111010 0.999101 - . ID=CGI_10016398; scaffold698 WUBlastX LTR_DIRS 81946 82725 446 - . . scaffold698 GLEAN mRNA 81586 93981 0.592995 - . ID=CGI_10020727; scaffold541 WUBlastX LINE_RTE-X 469491 471170 409 + . . scaffold541 GLEAN mRNA 466590 480582 0.782383 + . ID=CGI_10022394; scaffold1838 WUBlastX LINE_Proto2 364606 367227 360 + . . scaffold1838 GLEAN mRNA 361613 368125 0.631432 + . ID=CGI_10014266; scaffold451 WUBlastX LTR_Gypsy 67470 67535 20 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold223 WUBlastX LTR_Gypsy 6260 6703 96 - . . scaffold223 GLEAN mRNA 942 7795 0.487602 - . ID=CGI_10012904; scaffold57 WUBlastX DNA_hAT 293537 293683 26 - . . scaffold57 GLEAN mRNA 289160 294391 1 - . ID=CGI_10020549; scaffold616 WUBlastX LINE_RTE-BovB 316629 316673 30 + . . scaffold616 GLEAN mRNA 306388 329498 0.842956 - . ID=CGI_10015403; scaffold616 WUBlastX LINE_RTE-BovB 316661 317218 422 + . . scaffold616 GLEAN mRNA 306388 329498 0.842956 - . ID=CGI_10015403; scaffold43134 WUBlastX DNA_IS4EU 212256 212468 114 - . . scaffold43134 GLEAN mRNA 205984 218530 0.990712 + . ID=CGI_10008898; scaffold43134 WUBlastX DNA_IS4EU 212256 212468 114 - . . scaffold43134 GLEAN mRNA 212178 214956 0.948909 - . ID=CGI_10008899; scaffold43134 WUBlastX DNA_IS4EU 213022 213642 372 - . . scaffold43134 GLEAN mRNA 205984 218530 0.990712 + . ID=CGI_10008898; scaffold43134 WUBlastX DNA_IS4EU 213022 213642 372 - . . scaffold43134 GLEAN mRNA 212178 214956 0.948909 - . ID=CGI_10008899; scaffold1249 WUBlastX LINE_RTE-X 128571 130214 454 + . . scaffold1249 GLEAN mRNA 124551 131714 0.558382 + . ID=CGI_10019051; scaffold43182 WUBlastX DNA_En-Spm 187865 189112 570 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold1500 WUBlastX LTR_Gypsy 185685 186218 509 - . . scaffold1500 GLEAN mRNA 171651 188068 0.692586 - . ID=CGI_10007900; scaffold1350 WUBlastX LTR_DIRS 471327 472238 520 + . . scaffold1350 GLEAN mRNA 448816 473345 0.450856 - . ID=CGI_10017319; scaffold37436 WUBlastX DNA_TcMar-Tc1 12349 13350 458 - . . scaffold37436 GLEAN mRNA 9812 25876 0.0600399 + . ID=CGI_10002379; scaffold1806 WUBlastX LTR_Gypsy 84280 84666 117 - . . scaffold1806 GLEAN mRNA 70668 89122 0.54485 - . ID=CGI_10006158; scaffold36598 WUBlastX LTR_Ngaro 30041 30256 149 - . . scaffold36598 GLEAN mRNA 27586 31293 0.99428 - . ID=CGI_10002013; scaffold163 WUBlastX LTR_Ngaro 110208 111548 824 + . . scaffold163 GLEAN mRNA 103633 112444 0.895517 + . ID=CGI_10018610; scaffold43894 WUBlastX LINE_L2 321296 321303 35 + . . scaffold43894 GLEAN mRNA 321019 321303 0.997806 + . ID=CGI_10013894; scaffold1061 WUBlastX LTR_Gypsy 226598 226732 22 - . . scaffold1061 GLEAN mRNA 222330 230527 0.999351 - . ID=CGI_10017248; scaffold43634 WUBlastX LTR_Gypsy 223334 223774 72 - . . scaffold43634 GLEAN mRNA 223292 224107 0.823589 - . ID=CGI_10011538; scaffold290 WUBlastX LTR_Gypsy 552705 553031 23 + . . scaffold290 GLEAN mRNA 545890 556657 0.999676 + . ID=CGI_10018556; scaffold601 WUBlastX LTR_Gypsy 1147683 1147721 71 - . . scaffold601 GLEAN mRNA 1147404 1147721 0.999451 - . ID=CGI_10026859; scaffold53 WUBlastX LINE_L1 547998 548087 38 - . . scaffold53 GLEAN mRNA 545001 589869 0.567528 + . ID=CGI_10026671; scaffold150 WUBlastX LINE_L1 532212 532706 41 + . . scaffold150 GLEAN mRNA 532020 532706 0.618008 + . ID=CGI_10028613; scaffold1362 WUBlastX LINE_RTE-X 698681 698794 33 - . . scaffold1362 GLEAN mRNA 691736 715477 0.999895 - . ID=CGI_10023954; scaffold925 WUBlastX LINE_RTE-X 379884 379952 21 + . . scaffold925 GLEAN mRNA 368361 388516 0.521242 + . ID=CGI_10017426; scaffold370 WUBlastX DNA_TcMar-Marin 61134 61193 30 + . . scaffold370 GLEAN mRNA 48035 69825 0.999273 - . ID=CGI_10025517; scaffold1707 WUBlastX DNA_TcMar-Tc1 1578 1637 24 - . . scaffold1707 GLEAN mRNA 1527 2835 0.999999 - . ID=CGI_10009945; scaffold394 WUBlastX LTR_Gypsy 436485 437216 20 + . . scaffold394 GLEAN mRNA 435520 450975 0.532272 + . ID=CGI_10022085; scaffold1743 WUBlastX DNA_hAT-Charlie 207043 208080 28 + . . scaffold1743 GLEAN mRNA 206587 209579 0.614112 + . ID=CGI_10011657; scaffold252 WUBlastX LINE_L1-Tx1 271644 271751 42 - . . scaffold252 GLEAN mRNA 258013 272471 0.973463 + . ID=CGI_10010771; scaffold252 WUBlastX LINE_L1-Tx1 271892 272023 28 - . . scaffold252 GLEAN mRNA 258013 272471 0.973463 + . ID=CGI_10010771; C27694 WUBlastX DNA_Maverick 2709 3020 54 - . . C27694 GLEAN mRNA 2532 3020 1 - . ID=CGI_10000376; scaffold1188 WUBlastX LINE_CR1-L2 657104 657253 78 - . . scaffold1188 GLEAN mRNA 648038 660238 0.573951 - . ID=CGI_10025493; scaffold1733 WUBlastX LINE_CR1 163751 164173 24 + . . scaffold1733 GLEAN mRNA 156260 181153 0.701996 + . ID=CGI_10009488; scaffold1885 WUBlastX DNA_IS4EU 259176 259376 86 + . . scaffold1885 GLEAN mRNA 259176 276402 0.258057 + . ID=CGI_10013903; scaffold34942 WUBlastX DNA_Kolobok 11862 12092 50 - . . scaffold34942 GLEAN mRNA 4327 15160 0.738571 - . ID=CGI_10001379; scaffold1650 WUBlastX DNA_TcMar-Marin 460637 461485 30 + . . scaffold1650 GLEAN mRNA 454767 463877 0.937811 + . ID=CGI_10017782; scaffold37900 WUBlastX DNA_IS4EU 27933 28421 52 + . . scaffold37900 GLEAN mRNA 13260 48286 0.694403 - . ID=CGI_10002507; scaffold126 WUBlastX DNA_IS4EU 253377 253865 52 - . . scaffold126 GLEAN mRNA 251015 257085 0.999956 + . ID=CGI_10019188; scaffold599 WUBlastX LINE_RTE-X 292662 292724 37 + . . scaffold599 GLEAN mRNA 290478 340724 0.424971 - . ID=CGI_10021714; scaffold599 WUBlastX LINE_RTE-X 293716 293817 61 + . . scaffold599 GLEAN mRNA 290478 340724 0.424971 - . ID=CGI_10021714; scaffold1826 WUBlastX LTR_Gypsy 40912 41145 82 + . . scaffold1826 GLEAN mRNA 39665 57424 0.756838 + . ID=CGI_10006241; scaffold461 WUBlastX DNA_IS4EU 288339 289103 101 - . . scaffold461 GLEAN mRNA 287176 297048 0.67711 - . ID=CGI_10020108; scaffold599 WUBlastX LINE_L1-Tx1 316976 317398 51 + . . scaffold599 GLEAN mRNA 290478 340724 0.424971 - . ID=CGI_10021714; C35282 WUBlastX LTR_Gypsy 1961 2359 107 + . . C35282 GLEAN mRNA 1142 2704 0.999228 + . ID=CGI_10001456; scaffold43500 WUBlastX LINE_L1 70744 71640 22 - . . scaffold43500 GLEAN mRNA 67492 74179 0.830032 - . ID=CGI_10010614; scaffold686 WUBlastX DNA_PiggyBac 32662 32751 52 + . . scaffold686 GLEAN mRNA 23498 37370 0.50665 - . ID=CGI_10004462; scaffold126 WUBlastX DNA_IS4EU 251921 252346 112 - . . scaffold126 GLEAN mRNA 251015 257085 0.999956 + . ID=CGI_10019188; scaffold1036 WUBlastX LINE_L1 245130 245201 33 - . . scaffold1036 GLEAN mRNA 228869 245204 0.994909 + . ID=CGI_10019957; scaffold41568 WUBlastX LINE_RTE-X 77746 77895 36 - . . scaffold41568 GLEAN mRNA 75182 91109 0.978007 + . ID=CGI_10005300; scaffold313 WUBlastX DNA_En-Spm 614837 615004 70 - . . scaffold313 GLEAN mRNA 612366 622273 0.647784 - . ID=CGI_10026614; scaffold1616 WUBlastX LINE_RTE-X 62658 62984 97 + . . scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; scaffold1154 WUBlastX DNA_P 307901 309988 925 - . . scaffold1154 GLEAN mRNA 300263 342126 0.0862783 - . ID=CGI_10026162; scaffold481 WUBlastX LTR_Gypsy 1219310 1220215 385 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold117 WUBlastX LINE_CR1 53825 53983 113 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold760 WUBlastX LTR_Gypsy 800291 800710 61 - . . scaffold760 GLEAN mRNA 798582 806606 0.999169 - . ID=CGI_10024013; scaffold557 WUBlastX DNA_Maverick 522082 523521 51 - . . scaffold557 GLEAN mRNA 517497 527707 0.973204 - . ID=CGI_10017992; scaffold352 WUBlastX LTR_Gypsy 150930 152837 867 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold42210 WUBlastX LINE_L1-Tx1 101356 101904 381 + . . scaffold42210 GLEAN mRNA 98005 111760 0.591926 + . ID=CGI_10006389; scaffold42210 WUBlastX LINE_L1-Tx1 101869 103503 433 + . . scaffold42210 GLEAN mRNA 98005 111760 0.591926 + . ID=CGI_10006389; scaffold38464 WUBlastX LTR_Ngaro 32323 32370 22 - . . scaffold38464 GLEAN mRNA 29156 32869 1 - . ID=CGI_10002793; scaffold38464 WUBlastX LTR_Ngaro 32366 32746 153 - . . scaffold38464 GLEAN mRNA 29156 32869 1 - . ID=CGI_10002793; scaffold1518 WUBlastX DNA_hAT-Tip100 159499 159732 181 + . . scaffold1518 GLEAN mRNA 153424 166490 0.996783 + . ID=CGI_10017796; scaffold847 WUBlastX LINE_L1 706104 706454 157 - . . scaffold847 GLEAN mRNA 701746 708200 0.916724 - . ID=CGI_10022288; scaffold347 WUBlastX LINE_RTE-X 261269 261778 246 - . . scaffold347 GLEAN mRNA 231355 265361 0.350161 - . ID=CGI_10021787; scaffold1488 WUBlastX LINE_RTE-X 99039 99683 167 - . . scaffold1488 GLEAN mRNA 90513 121461 0.719592 + . ID=CGI_10005179; scaffold1603 WUBlastX LTR_Pao 333703 333795 43 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold191 WUBlastX DNA_Kolobok 206131 206391 93 - . . scaffold191 GLEAN mRNA 205783 209379 0.997333 - . ID=CGI_10022416; scaffold794 WUBlastX DNA_TcMar-Fot1 393426 394751 327 - . . scaffold794 GLEAN mRNA 378971 426999 0.796099 - . ID=CGI_10017158; scaffold610 WUBlastX LTR_Gypsy-Cigr 128988 129476 152 - . . scaffold610 GLEAN mRNA 126484 141606 0.728666 + . ID=CGI_10021092; scaffold610 WUBlastX LTR_Gypsy-Cigr 129944 130372 198 - . . scaffold610 GLEAN mRNA 126484 141606 0.728666 + . ID=CGI_10021092; scaffold1087 WUBlastX LTR_Gypsy 14962 15729 376 + . . scaffold1087 GLEAN mRNA 1458 16224 0.544547 + . ID=CGI_10001183; scaffold1484 WUBlastX LTR_Ngaro 108110 108886 119 - . . scaffold1484 GLEAN mRNA 103851 118273 0.818682 - . ID=CGI_10013260; scaffold38854 WUBlastX LINE_L1-Tx1 18115 18603 237 + . . scaffold38854 GLEAN mRNA 17499 20462 0.835209 + . ID=CGI_10003011; scaffold38854 WUBlastX LINE_L1-Tx1 18767 18844 33 + . . scaffold38854 GLEAN mRNA 17499 20462 0.835209 + . ID=CGI_10003011; scaffold531 WUBlastX DNA_Academ 22982 23659 299 - . . scaffold531 GLEAN mRNA 22748 29196 0.526203 - . ID=CGI_10014486; scaffold145 WUBlastX DNA_TcMar-Fot1 649168 649326 77 + . . scaffold145 GLEAN mRNA 640130 678599 0.569648 - . ID=CGI_10026560; scaffold145 WUBlastX DNA_TcMar-Fot1 649353 649658 218 + . . scaffold145 GLEAN mRNA 640130 678599 0.569648 - . ID=CGI_10026560; scaffold145 WUBlastX DNA_TcMar-Fot1 649664 649900 180 + . . scaffold145 GLEAN mRNA 640130 678599 0.569648 - . ID=CGI_10026560; scaffold230 WUBlastX LTR_Gypsy 252704 252859 51 + . . scaffold230 GLEAN mRNA 249649 283875 0.439776 - . ID=CGI_10011254; scaffold44098 WUBlastX LINE_CR1 195545 196384 237 + . . scaffold44098 GLEAN mRNA 188555 213785 0.544557 + . ID=CGI_10017708; scaffold210 WUBlastX LTR_Ngaro 224681 225130 310 + . . scaffold210 GLEAN mRNA 223042 231005 0.552757 + . ID=CGI_10015889; scaffold385 WUBlastX LINE_CR1 138721 138831 26 + . . scaffold385 GLEAN mRNA 126563 138970 0.944104 - . ID=CGI_10011596; scaffold1188 WUBlastX LTR_Gypsy 207619 208236 36 - . . scaffold1188 GLEAN mRNA 201691 209926 0.974251 - . ID=CGI_10025462; scaffold40182 WUBlastX LINE_Jockey 17636 17698 26 + . . scaffold40182 GLEAN mRNA 7136 27863 0.492081 + . ID=CGI_10003936; scaffold40182 WUBlastX LINE_Jockey 18696 18818 41 + . . scaffold40182 GLEAN mRNA 7136 27863 0.492081 + . ID=CGI_10003936; scaffold150 WUBlastX DNA_hAT 224267 224578 59 + . . scaffold150 GLEAN mRNA 224010 241607 0.593383 + . ID=CGI_10028591; scaffold635 WUBlastX DNA_hAT 57779 58090 59 - . . scaffold635 GLEAN mRNA 57167 59861 0.834155 - . ID=CGI_10008919; scaffold1841 WUBlastX LTR_Pao 104019 104447 34 - . . scaffold1841 GLEAN mRNA 102294 122510 0.525288 - . ID=CGI_10008273; scaffold1800 WUBlastX LTR_Pao 59758 59925 30 + . . scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; scaffold728 WUBlastX LTR_Gypsy 107113 107238 27 - . . scaffold728 GLEAN mRNA 80377 108098 0.99809 - . ID=CGI_10018228; scaffold63 WUBlastX DNA_En-Spm 415228 415536 43 + . . scaffold63 GLEAN mRNA 406163 425324 1 - . ID=CGI_10017281; scaffold880 WUBlastX DNA_Crypton 529888 529941 84 + . . scaffold880 GLEAN mRNA 522974 529941 0.988013 + . ID=CGI_10022199; scaffold43634 WUBlastX LTR_Gypsy 223382 223942 66 - . . scaffold43634 GLEAN mRNA 223292 224107 0.823589 - . ID=CGI_10011538; scaffold880 WUBlastX LTR_Gypsy 533542 533649 29 - . . scaffold880 GLEAN mRNA 532350 563503 0.438976 - . ID=CGI_10022201; scaffold1750 WUBlastX LTR_Gypsy 560254 560315 20 - . . scaffold1750 GLEAN mRNA 560254 561945 0.999999 - . ID=CGI_10021498; scaffold1711 WUBlastX LTR_Gypsy 339141 339308 34 + . . scaffold1711 GLEAN mRNA 339141 339371 0.69447 + . ID=CGI_10015611; scaffold162 WUBlastX LTR_Gypsy 72882 73172 61 - . . scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; scaffold705 WUBlastX DNA_IS4EU 327127 327897 31 + . . scaffold705 GLEAN mRNA 326554 329531 0.318359 + . ID=CGI_10015516; scaffold1200 WUBlastX DNA_IS4EU 164405 164557 52 - . . scaffold1200 GLEAN mRNA 162971 167931 0.983119 - . ID=CGI_10007622; scaffold126 WUBlastX DNA_IS4EU 252491 252592 33 - . . scaffold126 GLEAN mRNA 251015 257085 0.999956 + . ID=CGI_10019188; scaffold617 WUBlastX DNA_hAT-Ac 127228 127299 33 - . . scaffold617 GLEAN mRNA 125086 132906 0.990104 - . ID=CGI_10012725; scaffold150 WUBlastX DNA_Kolobok-Hyd 765640 765993 64 + . . scaffold150 GLEAN mRNA 757883 772537 0.984163 + . ID=CGI_10028624; scaffold150 WUBlastX DNA_Kolobok-Hyd 765640 765993 64 + . . scaffold150 GLEAN mRNA 757918 772055 0.999429 - . ID=CGI_10028625; scaffold1352 WUBlastX DNA_TcMar-Tc1 172861 173193 49 - . . scaffold1352 GLEAN mRNA 168784 185855 0.640433 - . ID=CGI_10018412; C22430 WUBlastX DNA_TcMar-Tc2 263 493 60 + . . C22430 GLEAN mRNA 263 553 0.555898 + . ID=CGI_10000081; scaffold43818 WUBlastX DNA_TcMar-Marin 202322 202402 30 + . . scaffold43818 GLEAN mRNA 188862 206391 0.999997 + . ID=CGI_10012766; scaffold712 WUBlastX LINE_Jockey 155787 155897 29 - . . scaffold712 GLEAN mRNA 144650 156180 1 + . ID=CGI_10016478; scaffold756 WUBlastX DNA_Maverick 241208 241513 70 + . . scaffold756 GLEAN mRNA 233283 244530 0.261655 + . ID=CGI_10016461; scaffold1767 WUBlastX DNA_Maverick 373975 374355 30 - . . scaffold1767 GLEAN mRNA 373639 384950 0.998695 - . ID=CGI_10016926; scaffold1179 WUBlastX LINE_L1 940955 941209 25 + . . scaffold1179 GLEAN mRNA 936280 947260 0.224969 + . ID=CGI_10027393; scaffold578 WUBlastX LINE_RTE-X 355857 355988 54 + . . scaffold578 GLEAN mRNA 348664 361929 0.458006 + . ID=CGI_10015130; scaffold1599 WUBlastX DNA_Sola 208582 208713 61 + . . scaffold1599 GLEAN mRNA 204689 219809 0.999676 - . ID=CGI_10027141; scaffold1895 WUBlastX LINE_RTE-X 188909 189064 47 + . . scaffold1895 GLEAN mRNA 187950 192915 1 + . ID=CGI_10010985; scaffold1895 WUBlastX LINE_RTE-X 188909 189064 47 + . . scaffold1895 GLEAN mRNA 187702 201524 0.585578 - . ID=CGI_10010984; scaffold156 WUBlastX LINE_RTE-X 328012 328224 33 - . . scaffold156 GLEAN mRNA 326940 337481 0.63561 + . ID=CGI_10026496; scaffold317 WUBlastX DNA_Kolobok-Hyd 9236 9577 43 + . . scaffold317 GLEAN mRNA 7090 24632 0.990181 + . ID=CGI_10019337; scaffold267 WUBlastX DNA_Maverick 111718 112086 77 - . . scaffold267 GLEAN mRNA 109916 113407 0.999351 - . ID=CGI_10018289; scaffold556 WUBlastX LTR_Copia 387960 388016 23 - . . scaffold556 GLEAN mRNA 381055 461901 0.212963 - . ID=CGI_10016808; scaffold38750 WUBlastX LINE_RTE-X 3948 4133 80 + . . scaffold38750 GLEAN mRNA 2403 8066 0.927797 + . ID=CGI_10002953; scaffold660 WUBlastX LINE_Penelope 144782 145180 45 + . . scaffold660 GLEAN mRNA 129253 184428 0.855126 - . ID=CGI_10013751; scaffold247 WUBlastX LINE_RTE-BovB 202585 202938 46 - . . scaffold247 GLEAN mRNA 197989 208519 0.419557 + . ID=CGI_10018593; scaffold138 WUBlastX LINE_L1 28319 28582 41 - . . scaffold138 GLEAN mRNA 800 34081 0.879441 + . ID=CGI_10008423; scaffold1098 WUBlastX LTR_Pao 70554 70937 23 + . . scaffold1098 GLEAN mRNA 56507 72093 1 - . ID=CGI_10010795; scaffold99 WUBlastX DNA_IS4EU 107897 108253 100 + . . scaffold99 GLEAN mRNA 106780 117604 0.544851 - . ID=CGI_10021191; scaffold1001 WUBlastX LINE_RTE-X 129079 129180 40 - . . scaffold1001 GLEAN mRNA 107697 137690 0.433806 + . ID=CGI_10007119; scaffold925 WUBlastX LTR_Gypsy 142660 142752 22 - . . scaffold925 GLEAN mRNA 124334 157225 0.393067 - . ID=CGI_10017412; scaffold424 WUBlastX DNA_hAT-Ac 94424 94828 89 + . . scaffold424 GLEAN mRNA 91671 98594 0.990391 - . ID=CGI_10014353; scaffold597 WUBlastX LINE_L1-Tx1 37616 38197 119 - . . scaffold597 GLEAN mRNA 30096 40610 0.999676 + . ID=CGI_10004927; scaffold588 WUBlastX LTR_Gypsy 399441 399527 25 - . . scaffold588 GLEAN mRNA 392510 405723 0.983024 + . ID=CGI_10016225; scaffold616 WUBlastX LINE_RTE-X 24830 25156 106 - . . scaffold616 GLEAN mRNA 2988 39761 0.690684 - . ID=CGI_10015383; scaffold41700 WUBlastX LINE_CR1 111010 111399 992 + . . scaffold41700 GLEAN mRNA 111010 111507 0.6496 + . ID=CGI_10005504; scaffold38672 WUBlastX LINE_L1-Tx1 7809 9515 986 - . . scaffold38672 GLEAN mRNA 3788 17200 0.99899 + . ID=CGI_10002887; scaffold337 WUBlastX LINE_L1-Tx1 1080474 1082891 770 + . . scaffold337 GLEAN mRNA 1058886 1083021 0.758954 + . ID=CGI_10028091; scaffold337 WUBlastX LINE_L1-Tx1 1082959 1083021 41 + . . scaffold337 GLEAN mRNA 1058886 1083021 0.758954 + . ID=CGI_10028091; scaffold1016 WUBlastX LINE_L1 306363 306545 63 + . . scaffold1016 GLEAN mRNA 305223 309571 0.991277 - . ID=CGI_10016894; scaffold121 WUBlastX LINE_RTE-X 356213 356818 137 + . . scaffold121 GLEAN mRNA 354873 363377 0.998475 - . ID=CGI_10025644; scaffold1750 WUBlastX DNA_Harbinger 680067 680525 101 + . . scaffold1750 GLEAN mRNA 679453 687752 0.873959 - . ID=CGI_10021501; scaffold1347 WUBlastX LINE_RTE-X 141555 141758 114 + . . scaffold1347 GLEAN mRNA 133564 144148 0.49238 + . ID=CGI_10012974; scaffold1347 WUBlastX LINE_RTE-X 142012 142251 41 + . . scaffold1347 GLEAN mRNA 133564 144148 0.49238 + . ID=CGI_10012974; scaffold676 WUBlastX LINE_RTE-X 576166 576435 38 - . . scaffold676 GLEAN mRNA 560023 599101 0.378138 + . ID=CGI_10021432; scaffold40454 WUBlastX DNA_TcMar-Tc1 85794 86804 212 - . . scaffold40454 GLEAN mRNA 83347 90444 1 - . ID=CGI_10004122; scaffold315 WUBlastX LINE_RTE-X 508607 509386 96 - . . scaffold315 GLEAN mRNA 498248 518855 0.999027 + . ID=CGI_10020433; scaffold1665 WUBlastX LINE_RTE-X 416599 416772 59 + . . scaffold1665 GLEAN mRNA 414201 417723 0.990268 - . ID=CGI_10015218; scaffold1785 WUBlastX LTR_Ngaro 648167 648370 82 + . . scaffold1785 GLEAN mRNA 629152 649907 0.539712 - . ID=CGI_10024391; scaffold1785 WUBlastX LTR_Ngaro 648412 648558 26 + . . scaffold1785 GLEAN mRNA 629152 649907 0.539712 - . ID=CGI_10024391; scaffold160 WUBlastX LINE_RTE-X 180566 181765 173 - . . scaffold160 GLEAN mRNA 177779 208943 0.919015 - . ID=CGI_10020578; scaffold1900 WUBlastX LINE_L1 393093 393203 24 + . . scaffold1900 GLEAN mRNA 384856 401407 0.999777 - . ID=CGI_10017347; scaffold1180 WUBlastX LTR_DIRS 24369 24659 93 + . . scaffold1180 GLEAN mRNA 13672 45655 0.485788 + . ID=CGI_10005979; scaffold514 WUBlastX LTR_Gypsy 455980 456426 109 - . . scaffold514 GLEAN mRNA 444665 473776 0.661186 - . ID=CGI_10018365; scaffold1018 WUBlastX LTR_Gypsy 551479 552228 279 - . . scaffold1018 GLEAN mRNA 547902 567181 0.39343 + . ID=CGI_10019779; scaffold267 WUBlastX DNA_Harbinger 93781 94764 336 + . . scaffold267 GLEAN mRNA 90014 96204 0.998586 - . ID=CGI_10018285; scaffold678 WUBlastX DNA_Harbinger 748742 749143 77 - . . scaffold678 GLEAN mRNA 740088 752113 0.995705 - . ID=CGI_10026377; scaffold678 WUBlastX DNA_Harbinger 748742 749143 77 - . . scaffold678 GLEAN mRNA 742489 752098 0.987721 + . ID=CGI_10026378; scaffold544 WUBlastX LINE_L1-Tx1 211036 211659 100 - . . scaffold544 GLEAN mRNA 202069 215253 0.999676 + . ID=CGI_10022552; scaffold544 WUBlastX LINE_L1-Tx1 211658 212224 273 - . . scaffold544 GLEAN mRNA 202069 215253 0.999676 + . ID=CGI_10022552; C29438 WUBlastX LINE_RTE-X 3544 3996 110 + . . C29438 GLEAN mRNA 533 5889 1 + . ID=CGI_10000534; scaffold1054 WUBlastX DNA_Kolobok 332859 333011 88 + . . scaffold1054 GLEAN mRNA 331138 333504 0.999415 + . ID=CGI_10012969; C35172 WUBlastX DNA_En-Spm 1555 3507 411 + . . C35172 GLEAN mRNA 161 6399 0.907032 + . ID=CGI_10001431; scaffold1583 WUBlastX DNA_Maverick 759061 759990 266 - . . scaffold1583 GLEAN mRNA 756798 766988 0.512265 - . ID=CGI_10025840; scaffold469 WUBlastX LTR_Pao 622239 622523 148 - . . scaffold469 GLEAN mRNA 620008 639653 0.99956 + . ID=CGI_10024690; scaffold43388 WUBlastX LINE_RTE-X 230814 231272 271 + . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold43932 WUBlastX DNA_En-Spm 366187 368007 808 - . . scaffold43932 GLEAN mRNA 361197 374116 0.888376 - . ID=CGI_10014131; scaffold743 WUBlastX LINE_RTE-X 107775 108152 203 - . . scaffold743 GLEAN mRNA 83791 109134 0.449406 + . ID=CGI_10008614; scaffold743 WUBlastX LINE_RTE-X 108211 108702 351 - . . scaffold743 GLEAN mRNA 83791 109134 0.449406 + . ID=CGI_10008614; scaffold433 WUBlastX LTR_Copia 211022 211867 25 + . . scaffold433 GLEAN mRNA 203495 226770 0.837765 + . ID=CGI_10027060; scaffold34282 WUBlastX LINE_L1 7973 8038 23 - . . scaffold34282 GLEAN mRNA 2734 14490 1 - . ID=CGI_10001256; scaffold471 WUBlastX LINE_L2 910964 911542 22 - . . scaffold471 GLEAN mRNA 900045 946913 0.362984 - . ID=CGI_10027028; scaffold1 WUBlastX LINE_CR1 169906 170277 48 + . . scaffold1 GLEAN mRNA 163980 185527 0.742263 + . ID=CGI_10013469; scaffold602 WUBlastX LTR_Gypsy 109546 110319 20 + . . scaffold602 GLEAN mRNA 109450 110514 0.590147 + . ID=CGI_10023173; scaffold1188 WUBlastX LTR_Gypsy 176089 176592 79 - . . scaffold1188 GLEAN mRNA 159311 176924 0.555609 - . ID=CGI_10025460; scaffold1717 WUBlastX DNA_hAT-hATw 341673 342332 29 - . . scaffold1717 GLEAN mRNA 340986 342620 0.999372 - . ID=CGI_10013403; scaffold1652 WUBlastX RC_Helitron 224905 225096 45 - . . scaffold1652 GLEAN mRNA 224467 242523 0.999676 - . ID=CGI_10012393; scaffold208 WUBlastX DNA_TcMar-Marin 122684 122902 20 + . . scaffold208 GLEAN mRNA 121781 129238 1 - . ID=CGI_10010027; scaffold43182 WUBlastX LTR_ERV1 166389 166472 55 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold37664 WUBlastX LINE_L2 29970 30701 40 + . . scaffold37664 GLEAN mRNA 26553 34965 0.581431 + . ID=CGI_10002440; scaffold33036 WUBlastX DNA_TcMar-Marin 11477 11676 32 + . . scaffold33036 GLEAN mRNA 1876 11676 0.76238 + . ID=CGI_10000985; scaffold38422 WUBlastX LINE_L2 30377 30535 46 - . . scaffold38422 GLEAN mRNA 27073 31824 0.999996 - . ID=CGI_10002764; scaffold22 WUBlastX DNA_TcMar-Fot1 1863347 1863442 65 + . . scaffold22 GLEAN mRNA 1863347 1863687 0.647996 + . ID=CGI_10028937; scaffold37740 WUBlastX DNA_MuDR 10940 11311 25 - . . scaffold37740 GLEAN mRNA 280 12182 0.630216 - . ID=CGI_10002468; scaffold276 WUBlastX DNA_P 29838 29954 53 - . . scaffold276 GLEAN mRNA 27405 34935 0.425332 - . ID=CGI_10006435; scaffold1020 WUBlastX DNA_P 11337 11453 53 + . . scaffold1020 GLEAN mRNA 10748 11618 1 + . ID=CGI_10012847; scaffold236 WUBlastX DNA_P 227759 228019 72 + . . scaffold236 GLEAN mRNA 227720 229392 0.996819 + . ID=CGI_10018138; scaffold1832 WUBlastX DNA_Maverick 209107 209364 54 - . . scaffold1832 GLEAN mRNA 208019 210157 0.999949 - . ID=CGI_10018469; scaffold1745 WUBlastX LINE_RTE-X 34975 35214 39 - . . scaffold1745 GLEAN mRNA 32786 58007 0.99601 - . ID=CGI_10005404; scaffold42904 WUBlastX LINE_RTE-X 103409 103585 33 + . . scaffold42904 GLEAN mRNA 87880 118208 0.944676 - . ID=CGI_10008103; scaffold595 WUBlastX LINE_RTE-X 86308 86574 61 - . . scaffold595 GLEAN mRNA 66058 94029 0.989948 - . ID=CGI_10005863; scaffold416 WUBlastX LINE_RTE-X 160535 160762 33 - . . scaffold416 GLEAN mRNA 138143 163837 0.657495 + . ID=CGI_10014740; scaffold162 WUBlastX LTR_Gypsy-Cigr 73002 73175 68 - . . scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; scaffold168 WUBlastX LINE_CR1 20260 20466 21 - . . scaffold168 GLEAN mRNA 17788 42641 0.990039 - . ID=CGI_10025582; scaffold35438 WUBlastX LTR_Gypsy 22653 22679 51 + . . scaffold35438 GLEAN mRNA 22653 23117 0.996819 + . ID=CGI_10001515; scaffold35438 WUBlastX LTR_Gypsy 22332 22372 51 + . . scaffold35438 GLEAN mRNA 3327 22372 0.999028 - . ID=CGI_10001514; scaffold35960 WUBlastX DNA_hAT-Tip100 11219 11398 83 + . . scaffold35960 GLEAN mRNA 415 14469 0.999984 - . ID=CGI_10001702; scaffold1235 WUBlastX LINE_RTE-X 101177 101239 21 + . . scaffold1235 GLEAN mRNA 100102 129172 0.450725 + . ID=CGI_10011833; scaffold1235 WUBlastX LINE_RTE-X 101863 102075 80 + . . scaffold1235 GLEAN mRNA 100102 129172 0.450725 + . ID=CGI_10011833; scaffold37790 WUBlastX LTR_Ngaro 9808 10071 69 - . . scaffold37790 GLEAN mRNA 1900 11693 1 - . ID=CGI_10002498; scaffold127 WUBlastX DNA_Crypton 76934 77515 94 + . . scaffold127 GLEAN mRNA 76604 77650 0.841401 + . ID=CGI_10004407; scaffold38780 WUBlastX LTR_Gypsy 12162 12605 81 + . . scaffold38780 GLEAN mRNA 2671 16848 0.959487 - . ID=CGI_10002959; scaffold43182 WUBlastX DNA_Kolobok 148412 148804 69 - . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold1599 WUBlastX LINE_Penelope 246074 246589 57 - . . scaffold1599 GLEAN mRNA 238916 249872 0.993706 - . ID=CGI_10027143; scaffold3 WUBlastX LINE_RTE-X 50769 51032 71 + . . scaffold3 GLEAN mRNA 34173 61876 0.984416 - . ID=CGI_10027268; scaffold3 WUBlastX LINE_RTE-X 50769 51032 71 + . . scaffold3 GLEAN mRNA 47892 52805 0.999676 + . ID=CGI_10027269; scaffold1623 WUBlastX LINE_RTE-BovB 8685 9074 108 - . . scaffold1623 GLEAN mRNA 2672 21645 0.211469 + . ID=CGI_10002853; scaffold408 WUBlastX LTR_DIRS 564491 564697 84 - . . scaffold408 GLEAN mRNA 551872 569972 0.499918 - . ID=CGI_10023249; scaffold164 WUBlastX LTR_Gypsy 53776 54414 36 - . . scaffold164 GLEAN mRNA 40628 54980 0.99473 - . ID=CGI_10021845; scaffold40564 WUBlastX LINE_DRE 10046 10123 23 + . . scaffold40564 GLEAN mRNA 6674 28756 0.488599 + . ID=CGI_10004207; scaffold209 WUBlastX DNA_hAT-Charlie 258759 259085 92 - . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold12 WUBlastX LTR_Gypsy 347139 347258 22 + . . scaffold12 GLEAN mRNA 326477 354530 0.999321 + . ID=CGI_10018042; scaffold6 WUBlastX LINE_RTE-BovB 244034 244117 23 - . . scaffold6 GLEAN mRNA 243521 244840 0.993546 - . ID=CGI_10022303; scaffold90 WUBlastX LTR_Copia 139625 139762 26 + . . scaffold90 GLEAN mRNA 135730 142790 0.547035 + . ID=CGI_10015161; scaffold40928 WUBlastX LINE_CR1 39772 40593 90 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold986 WUBlastX DNA_Harbinger 138104 138244 20 - . . scaffold986 GLEAN mRNA 135296 141072 0.877811 + . ID=CGI_10009960; scaffold34942 WUBlastX DNA_Kolobok 10169 10333 21 + . . scaffold34942 GLEAN mRNA 4327 15160 0.738571 - . ID=CGI_10001379; scaffold34942 WUBlastX DNA_Kolobok 10169 10333 21 + . . scaffold34942 GLEAN mRNA 10169 10981 1 + . ID=CGI_10001380; scaffold1329 WUBlastX DNA_hAT-Ac 91897 92229 59 - . . scaffold1329 GLEAN mRNA 77218 94406 0.816606 - . ID=CGI_10015782; scaffold101 WUBlastX DNA_MuDR 321873 322181 97 + . . scaffold101 GLEAN mRNA 308692 328638 0.999351 + . ID=CGI_10021645; scaffold101 WUBlastX DNA_MuDR 321873 322181 97 + . . scaffold101 GLEAN mRNA 312467 328385 0.843729 - . ID=CGI_10021646; scaffold39858 WUBlastX DNA_Kolobok 11040 11279 60 - . . scaffold39858 GLEAN mRNA 10188 11366 1 - . ID=CGI_10003659; scaffold1154 WUBlastX DNA_Harbinger 403783 404427 192 + . . scaffold1154 GLEAN mRNA 400669 406858 0.774692 - . ID=CGI_10026168; scaffold1259 WUBlastX DNA_MuDR 14808 15254 62 - . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold1259 WUBlastX DNA_MuDR 15821 16027 60 - . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold1186 WUBlastX LINE_L1 236770 236877 39 + . . scaffold1186 GLEAN mRNA 224167 244631 0.351511 - . ID=CGI_10010599; scaffold160 WUBlastX DNA_Crypton 499509 500123 150 + . . scaffold160 GLEAN mRNA 498862 500159 0.994424 + . ID=CGI_10020604; scaffold1865 WUBlastX LINE_RTE-X 291986 292576 142 + . . scaffold1865 GLEAN mRNA 265949 318343 0.640148 - . ID=CGI_10013547; scaffold169 WUBlastX DNA_Sola 635513 637102 51 - . . scaffold169 GLEAN mRNA 628224 637732 0.973288 - . ID=CGI_10022960; scaffold347 WUBlastX LINE_CR1 127873 128097 166 + . . scaffold347 GLEAN mRNA 127096 135007 0.556255 - . ID=CGI_10021779; scaffold1785 WUBlastX LINE_L2 544776 545027 37 + . . scaffold1785 GLEAN mRNA 522476 550245 0.457905 + . ID=CGI_10024389; scaffold1785 WUBlastX LINE_L2 545035 545199 36 + . . scaffold1785 GLEAN mRNA 522476 550245 0.457905 + . ID=CGI_10024389; scaffold6 WUBlastX LTR_Pao 127458 128726 998 + . . scaffold6 GLEAN mRNA 120164 144778 0.978215 - . ID=CGI_10022297; scaffold6 WUBlastX LTR_Pao 130255 130353 65 + . . scaffold6 GLEAN mRNA 120164 144778 0.978215 - . ID=CGI_10022297; scaffold19 WUBlastX DNA_TcMar-Tc1 152530 152715 38 - . . scaffold19 GLEAN mRNA 151397 159937 0.999878 + . ID=CGI_10010837; scaffold150 WUBlastX LTR_DIRS 1354630 1355463 129 - . . scaffold150 GLEAN mRNA 1351630 1358824 0.998084 - . ID=CGI_10028676; scaffold1096 WUBlastX LTR_Gypsy 66076 66705 128 - . . scaffold1096 GLEAN mRNA 61473 82912 0.788854 + . ID=CGI_10006453; scaffold880 WUBlastX DNA_Kolobok 673598 673813 40 - . . scaffold880 GLEAN mRNA 673595 686654 0.926854 - . ID=CGI_10022204; scaffold880 WUBlastX DNA_Kolobok 674000 674146 59 - . . scaffold880 GLEAN mRNA 673595 686654 0.926854 - . ID=CGI_10022204; scaffold880 WUBlastX DNA_Kolobok 674610 674891 96 - . . scaffold880 GLEAN mRNA 673595 686654 0.926854 - . ID=CGI_10022204; scaffold1459 WUBlastX LINE_L1-Tx1 15340 15711 225 + . . scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; scaffold1459 WUBlastX LINE_L1-Tx1 16161 16424 108 + . . scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; scaffold1459 WUBlastX LINE_L1-Tx1 16544 16837 56 + . . scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; scaffold1009 WUBlastX DNA_IS4EU 431830 431934 414 + . . scaffold1009 GLEAN mRNA 430368 431934 1 + . ID=CGI_10028733; scaffold1603 WUBlastX LTR_Pao 331630 331938 125 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold1603 WUBlastX LTR_Pao 332070 333143 156 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold1603 WUBlastX LTR_Pao 333361 333558 62 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold1603 WUBlastX LTR_Pao 333867 334100 96 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold43170 WUBlastX DNA_Zator 116010 116609 67 - . . scaffold43170 GLEAN mRNA 109769 118628 0.999676 - . ID=CGI_10009102; scaffold43170 WUBlastX DNA_Zator 116010 116609 67 - . . scaffold43170 GLEAN mRNA 114474 133457 0.997994 + . ID=CGI_10009103; scaffold321 WUBlastX LTR_Gypsy 477812 478081 190 + . . scaffold321 GLEAN mRNA 474717 485753 0.439448 - . ID=CGI_10020812; scaffold1815 WUBlastX LTR_Pao 45259 46722 629 - . . scaffold1815 GLEAN mRNA 41524 49047 0.999999 + . ID=CGI_10010261; scaffold819 WUBlastX LINE_L2 49524 49775 45 - . . scaffold819 GLEAN mRNA 34933 54933 0.447302 + . ID=CGI_10003889; scaffold1127 WUBlastX LTR_Pao 262284 262478 48 - . . scaffold1127 GLEAN mRNA 249685 268945 0.834068 - . ID=CGI_10010657; scaffold852 WUBlastX LTR_Copia 70349 70744 67 - . . scaffold852 GLEAN mRNA 66203 74351 1 + . ID=CGI_10012036; scaffold1382 WUBlastX LINE_CR1 138632 139027 70 + . . scaffold1382 GLEAN mRNA 113082 142955 0.812933 - . ID=CGI_10011173; scaffold1891 WUBlastX DNA_Crypton 101558 101884 44 - . . scaffold1891 GLEAN mRNA 99950 103024 0.647502 + . ID=CGI_10008734; scaffold1195 WUBlastX LINE_L2 290501 291139 46 - . . scaffold1195 GLEAN mRNA 290174 296026 0.541928 - . ID=CGI_10012102; scaffold1093 WUBlastX LINE_L2 81963 82223 67 + . . scaffold1093 GLEAN mRNA 77464 87990 0.558336 + . ID=CGI_10019787; scaffold42112 WUBlastX DNA_hAT-hATw 51304 51669 21 - . . scaffold42112 GLEAN mRNA 50368 56260 0.999673 - . ID=CGI_10006116; scaffold42022 WUBlastX DNA_IS4EU 45207 45305 32 - . . scaffold42022 GLEAN mRNA 12310 51169 0.982585 - . ID=CGI_10006049; scaffold852 WUBlastX DNA_Kolobok-IS4 126724 127212 83 + . . scaffold852 GLEAN mRNA 121104 128274 1 + . ID=CGI_10012039; scaffold204 WUBlastX DNA_Kolobok-Hyd 395453 395677 27 + . . scaffold204 GLEAN mRNA 394042 414406 0.339936 + . ID=CGI_10026106; scaffold610 WUBlastX LINE_L1 599722 599736 52 - . . scaffold610 GLEAN mRNA 570530 599736 0.974441 - . ID=CGI_10021131; scaffold39804 WUBlastX LINE_L2 54692 54913 50 - . . scaffold39804 GLEAN mRNA 45401 55574 0.999999 - . ID=CGI_10003620; scaffold1062 WUBlastX LINE_L2 8530 8805 73 + . . scaffold1062 GLEAN mRNA 7819 14088 0.462682 - . ID=CGI_10005737; scaffold1136 WUBlastX LINE_I 45820 46434 20 + . . scaffold1136 GLEAN mRNA 45613 63125 0.999895 + . ID=CGI_10003080; scaffold41816 WUBlastX LTR_Ngaro 25246 25332 24 - . . scaffold41816 GLEAN mRNA 6032 28025 0.728522 - . ID=CGI_10005647; scaffold39758 WUBlastX LINE_RTE-X 61393 61785 40 - . . scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold38274 WUBlastX LINE_RTE-X 16325 16621 50 + . . scaffold38274 GLEAN mRNA 16103 49739 0.512325 + . ID=CGI_10002704; scaffold351 WUBlastX LTR_ERVK 185203 185364 34 - . . scaffold351 GLEAN mRNA 182214 186264 0.847521 + . ID=CGI_10022595; scaffold556 WUBlastX LINE_RTE-X 280204 280311 26 + . . scaffold556 GLEAN mRNA 272202 380485 0.387115 - . ID=CGI_10016806; scaffold1411 WUBlastX LINE_RTE-X 79872 80375 38 + . . scaffold1411 GLEAN mRNA 68337 88337 0.750194 - . ID=CGI_10009186; scaffold39696 WUBlastX DNA_Harbinger 56512 56622 34 + . . scaffold39696 GLEAN mRNA 41717 59740 0.990766 + . ID=CGI_10003524; scaffold1599 WUBlastX DNA_Sola 208582 208692 67 + . . scaffold1599 GLEAN mRNA 204689 219809 0.999676 - . ID=CGI_10027141; C33658 WUBlastX DNA_Sola 11145 11531 58 + . . C33658 GLEAN mRNA 10027 15037 0.499831 - . ID=CGI_10001113; scaffold257 WUBlastX DNA_TcMar-Marin 1600109 1600189 22 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold1558 WUBlastX LINE_L1-Tx1 38105 38251 49 - . . scaffold1558 GLEAN mRNA 34398 73907 0.517269 - . ID=CGI_10004094; scaffold1213 WUBlastX LINE_L1-Tx1 419237 419452 83 - . . scaffold1213 GLEAN mRNA 408300 423198 0.400191 - . ID=CGI_10027450; scaffold535 WUBlastX DNA_TcMar-Tc1 116844 116948 44 + . . scaffold535 GLEAN mRNA 111373 154699 0.592399 + . ID=CGI_10020283; scaffold1627 WUBlastX DNA_TcMar-Tc1 208057 208266 48 + . . scaffold1627 GLEAN mRNA 173064 218682 0.503235 - . ID=CGI_10009567; scaffold42836 WUBlastX LINE_CR1 168758 168832 21 + . . scaffold42836 GLEAN mRNA 143632 181424 1 + . ID=CGI_10007862; scaffold976 WUBlastX LTR_Gypsy 43116 43628 67 - . . scaffold976 GLEAN mRNA 40652 60127 0.884558 - . ID=CGI_10014002; scaffold42392 WUBlastX LINE_CR1-L2 114330 114722 30 - . . scaffold42392 GLEAN mRNA 99459 124879 0.476918 + . ID=CGI_10006785; scaffold794 WUBlastX LTR_Gypsy 280600 280662 23 + . . scaffold794 GLEAN mRNA 271227 282643 0.491343 - . ID=CGI_10017153; scaffold698 WUBlastX LINE_L1 217320 217403 25 - . . scaffold698 GLEAN mRNA 215942 226142 0.793097 + . ID=CGI_10020736; scaffold621 WUBlastX LTR_Gypsy 154248 154445 26 - . . scaffold621 GLEAN mRNA 154047 155567 0.573337 - . ID=CGI_10017674; scaffold621 WUBlastX LTR_Gypsy 154248 154445 26 - . . scaffold621 GLEAN mRNA 127381 238205 0.796035 + . ID=CGI_10017672; scaffold1578 WUBlastX LTR_Pao 67258 67575 114 + . . scaffold1578 GLEAN mRNA 44226 72498 0.998909 - . ID=CGI_10008160; scaffold421 WUBlastX LINE_L1-Tx1 175070 175471 126 - . . scaffold421 GLEAN mRNA 170277 178992 0.999676 + . ID=CGI_10012155; scaffold451 WUBlastX LTR_Gypsy 66854 67369 85 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold361 WUBlastX LINE_Penelope 343427 343792 143 - . . scaffold361 GLEAN mRNA 333222 389747 0.874383 - . ID=CGI_10020861; scaffold1459 WUBlastX LINE_L1-Tx1 15229 15711 119 + . . scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; C24604 WUBlastX DNA_MuDR 792 989 42 - . . C24604 GLEAN mRNA 771 2674 0.997918 - . ID=CGI_10000200; scaffold447 WUBlastX LINE_RTE-X 334408 334446 22 - . . scaffold447 GLEAN mRNA 332382 354643 0.998297 + . ID=CGI_10014233; scaffold1599 WUBlastX LTR_Gypsy 677263 678168 689 - . . scaffold1599 GLEAN mRNA 676136 688286 0.501311 - . ID=CGI_10027155; scaffold440 WUBlastX LTR_Gypsy 285956 286162 145 + . . scaffold440 GLEAN mRNA 284962 311438 0.999351 + . ID=CGI_10014144; scaffold440 WUBlastX LTR_Gypsy 286171 286473 114 + . . scaffold440 GLEAN mRNA 284962 311438 0.999351 + . ID=CGI_10014144; scaffold1431 WUBlastX DNA_Sola 78532 79359 187 - . . scaffold1431 GLEAN mRNA 78529 80232 0.836016 - . ID=CGI_10004391; scaffold1431 WUBlastX DNA_Sola 79483 80232 35 - . . scaffold1431 GLEAN mRNA 78529 80232 0.836016 - . ID=CGI_10004391; scaffold1609 WUBlastX LTR_Gypsy 158513 159157 515 + . . scaffold1609 GLEAN mRNA 144417 163840 0.83514 - . ID=CGI_10010602; scaffold1609 WUBlastX LTR_Gypsy 159151 160602 1370 + . . scaffold1609 GLEAN mRNA 144417 163840 0.83514 - . ID=CGI_10010602; scaffold1609 WUBlastX LTR_Gypsy 160942 161712 425 + . . scaffold1609 GLEAN mRNA 144417 163840 0.83514 - . ID=CGI_10010602; scaffold1603 WUBlastX LTR_Pao 333780 333998 35 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold274 WUBlastX DNA_En-Spm 52618 53469 295 - . . scaffold274 GLEAN mRNA 47250 68838 0.971857 - . ID=CGI_10017009; scaffold370 WUBlastX DNA_hAT-hATw 843776 844513 60 + . . scaffold370 GLEAN mRNA 838405 846799 0.855201 + . ID=CGI_10025566; scaffold1350 WUBlastX LTR_Gypsy 119254 120060 343 + . . scaffold1350 GLEAN mRNA 116715 124816 0.68864 + . ID=CGI_10017298; scaffold1350 WUBlastX LTR_Gypsy 119254 120060 343 + . . scaffold1350 GLEAN mRNA 92477 120800 0.694726 - . ID=CGI_10017297; scaffold42890 WUBlastX DNA_Sola 183992 185536 274 - . . scaffold42890 GLEAN mRNA 182304 199068 0.438528 - . ID=CGI_10008045; scaffold660 WUBlastX LINE_RTE-BovB 155951 156259 240 + . . scaffold660 GLEAN mRNA 129253 184428 0.855126 - . ID=CGI_10013751; scaffold660 WUBlastX LINE_RTE-BovB 156259 156339 58 + . . scaffold660 GLEAN mRNA 129253 184428 0.855126 - . ID=CGI_10013751; scaffold660 WUBlastX LINE_RTE-BovB 156315 156758 418 + . . scaffold660 GLEAN mRNA 129253 184428 0.855126 - . ID=CGI_10013751; scaffold1866 WUBlastX LINE_L2 204724 204933 54 + . . scaffold1866 GLEAN mRNA 197037 209666 0.769721 - . ID=CGI_10017910; scaffold35486 WUBlastX LINE_CR1-L2 16281 16514 37 - . . scaffold35486 GLEAN mRNA 8513 17205 0.999998 - . ID=CGI_10001528; scaffold1800 WUBlastX LTR_Copia 86821 86871 21 + . . scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; scaffold490 WUBlastX LTR_Pao 115371 115556 33 - . . scaffold490 GLEAN mRNA 110595 119533 0.717521 + . ID=CGI_10009162; scaffold42528 WUBlastX LTR_Copia 144410 144526 49 + . . scaffold42528 GLEAN mRNA 136401 146936 0.889923 + . ID=CGI_10007210; scaffold39804 WUBlastX LINE_Jockey 54563 54910 25 - . . scaffold39804 GLEAN mRNA 45401 55574 0.999999 - . ID=CGI_10003620; scaffold35986 WUBlastX LTR_DIRS 14598 15137 24 - . . scaffold35986 GLEAN mRNA 7135 18106 0.651135 + . ID=CGI_10001706; scaffold77 WUBlastX LTR_Gypsy 634413 634637 40 + . . scaffold77 GLEAN mRNA 634413 634898 0.481188 + . ID=CGI_10027986; scaffold12 WUBlastX LTR_Gypsy 293557 293745 24 - . . scaffold12 GLEAN mRNA 290334 319375 0.793549 - . ID=CGI_10018039; scaffold557 WUBlastX LINE_I 389110 390012 23 - . . scaffold557 GLEAN mRNA 389014 397940 0.685724 - . ID=CGI_10017978; scaffold1785 WUBlastX DNA_hAT-Ac 927475 927662 75 - . . scaffold1785 GLEAN mRNA 909020 927662 0.54223 - . ID=CGI_10024406; scaffold1462 WUBlastX DNA_Harbinger 359533 359664 32 - . . scaffold1462 GLEAN mRNA 348326 383431 0.995853 + . ID=CGI_10014386; scaffold445 WUBlastX LINE_R2-Hero 324240 324512 67 + . . scaffold445 GLEAN mRNA 299978 341164 0.811094 - . ID=CGI_10019444; scaffold101 WUBlastX LTR_Gypsy 380508 381383 42 - . . scaffold101 GLEAN mRNA 372430 382001 0.551916 - . ID=CGI_10021649; scaffold1711 WUBlastX LTR_Gypsy 339141 339170 70 + . . scaffold1711 GLEAN mRNA 339141 339371 0.69447 + . ID=CGI_10015611; scaffold714 WUBlastX DNA_TcMar-Marin 392063 392317 35 + . . scaffold714 GLEAN mRNA 380562 399951 0.999675 - . ID=CGI_10016647; scaffold586 WUBlastX LTR_Ngaro 464238 464426 23 + . . scaffold586 GLEAN mRNA 448256 475873 0.905445 - . ID=CGI_10018008; scaffold586 WUBlastX LTR_Ngaro 464435 464527 22 + . . scaffold586 GLEAN mRNA 448256 475873 0.905445 - . ID=CGI_10018008; scaffold586 WUBlastX LTR_Ngaro 464733 464888 33 + . . scaffold586 GLEAN mRNA 448256 475873 0.905445 - . ID=CGI_10018008; scaffold305 WUBlastX DNA_NOF 443253 443354 23 + . . scaffold305 GLEAN mRNA 436325 448362 0.78661 - . ID=CGI_10019140; scaffold888 WUBlastX DNA_MuDR 335687 335989 48 - . . scaffold888 GLEAN mRNA 335636 340311 0.376374 - . ID=CGI_10013460; scaffold128 WUBlastX LINE_Penelope 96760 96885 81 - . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; scaffold354 WUBlastX LINE_Penelope 129611 129712 24 - . . scaffold354 GLEAN mRNA 123850 132843 0.496488 + . ID=CGI_10025699; scaffold487 WUBlastX DNA_P 447013 447135 26 - . . scaffold487 GLEAN mRNA 439996 447135 0.39713 - . ID=CGI_10017054; scaffold973 WUBlastX DNA_P 480774 480989 24 + . . scaffold973 GLEAN mRNA 459812 495219 0.606957 - . ID=CGI_10021557; scaffold975 WUBlastX LINE_L1 244664 245032 62 - . . scaffold975 GLEAN mRNA 241213 250600 0.499805 - . ID=CGI_10013329; scaffold49 WUBlastX LINE_L1-Tx1 246655 246912 21 - . . scaffold49 GLEAN mRNA 244358 267681 0.992812 - . ID=CGI_10013285; scaffold1213 WUBlastX LINE_L1 419303 419503 76 - . . scaffold1213 GLEAN mRNA 408300 423198 0.400191 - . ID=CGI_10027450; scaffold150 WUBlastX LINE_L1 532038 532664 29 + . . scaffold150 GLEAN mRNA 532020 532706 0.618008 + . ID=CGI_10028613; scaffold86 WUBlastX DNA_Kolobok-Hyd 1353452 1353520 29 - . . scaffold86 GLEAN mRNA 1350663 1354624 0.5119 - . ID=CGI_10028203; scaffold1024 WUBlastX DNA_Maverick 97131 97394 65 + . . scaffold1024 GLEAN mRNA 87362 100892 0.557329 - . ID=CGI_10028520; scaffold905 WUBlastX LINE_R2 3747 3902 22 + . . scaffold905 GLEAN mRNA 3174 14725 0.840832 + . ID=CGI_10004338; scaffold696 WUBlastX LINE_RTE-X 8219 8902 31 + . . scaffold696 GLEAN mRNA 7653 15168 0.999968 + . ID=CGI_10003719; scaffold1154 WUBlastX LINE_RTE-X 221585 221809 53 + . . scaffold1154 GLEAN mRNA 221230 227682 0.517509 - . ID=CGI_10026156; scaffold44054 WUBlastX LINE_RTE-X 307502 307684 56 - . . scaffold44054 GLEAN mRNA 306696 317315 0.999734 + . ID=CGI_10016171; scaffold338 WUBlastX LINE_RTE-X 226334 226462 65 - . . scaffold338 GLEAN mRNA 225763 251936 1 + . ID=CGI_10011188; scaffold257 WUBlastX DNA_TcMar-Marin 1600280 1600438 62 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold44006 WUBlastX DNA_TcMar-Tc1 255561 255959 68 + . . scaffold44006 GLEAN mRNA 250442 262690 0.99731 - . ID=CGI_10015581; scaffold816 WUBlastX DNA_TcMar-Tc1 229846 230040 54 - . . scaffold816 GLEAN mRNA 223398 238743 0.358147 + . ID=CGI_10015655; scaffold301 WUBlastX DNA_Sola 951223 951426 36 - . . scaffold301 GLEAN mRNA 935860 957762 0.976661 - . ID=CGI_10026737; scaffold38510 WUBlastX DNA_Sola 30716 30910 26 + . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold374 WUBlastX LINE_L1-Tx1 55887 56090 56 + . . scaffold374 GLEAN mRNA 54604 61179 0.696664 + . ID=CGI_10018717; scaffold44006 WUBlastX DNA_TcMar-Tc1 255639 255953 70 + . . scaffold44006 GLEAN mRNA 250442 262690 0.99731 - . ID=CGI_10015581; scaffold714 WUBlastX DNA_TcMar-Tc1 399006 399200 60 + . . scaffold714 GLEAN mRNA 380562 399951 0.999675 - . ID=CGI_10016647; scaffold78 WUBlastX LTR_Gypsy 38495 38755 84 + . . scaffold78 GLEAN mRNA 33688 45299 0.504298 + . ID=CGI_10006914; scaffold1354 WUBlastX LINE_R1 170130 170249 22 - . . scaffold1354 GLEAN mRNA 170031 176711 0.9991 - . ID=CGI_10014934; scaffold1579 WUBlastX LINE_CR1 317939 318165 58 - . . scaffold1579 GLEAN mRNA 317346 318165 1 + . ID=CGI_10016868; scaffold461 WUBlastX LTR_Pao 515204 515695 112 + . . scaffold461 GLEAN mRNA 510838 522193 0.712865 + . ID=CGI_10020118; scaffold1672 WUBlastX LTR_Gypsy 81219 81452 54 + . . scaffold1672 GLEAN mRNA 57333 81461 0.999231 + . ID=CGI_10004942; scaffold43388 WUBlastX DNA_IS4EU 214660 214974 98 + . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold626 WUBlastX DNA_Harbinger 142594 142935 109 - . . scaffold626 GLEAN mRNA 111038 155634 0.745946 - . ID=CGI_10019981; C28310 WUBlastX LINE_CR1 1906 1980 45 - . . C28310 GLEAN mRNA 1906 2427 0.999064 - . ID=CGI_10000419; scaffold880 WUBlastX LTR_Gypsy 511960 512376 102 + . . scaffold880 GLEAN mRNA 490990 515117 0.998312 - . ID=CGI_10022196; scaffold35180 WUBlastX LINE_RTE-X 9682 10011 98 + . . scaffold35180 GLEAN mRNA 904 21932 0.992496 - . ID=CGI_10001433; scaffold794 WUBlastX LINE_RTE-BovB 318141 318902 66 - . . scaffold794 GLEAN mRNA 308972 320828 0.696321 - . ID=CGI_10017155; scaffold172 WUBlastX LTR_Gypsy 16016 16297 73 + . . scaffold172 GLEAN mRNA 5002 17897 0.999274 - . ID=CGI_10013508; scaffold721 WUBlastX LINE_RTE-X 594228 594896 86 - . . scaffold721 GLEAN mRNA 582991 607417 0.998859 - . ID=CGI_10022014; scaffold385 WUBlastX DNA_TcMar-Tc1 276059 276652 44 + . . scaffold385 GLEAN mRNA 273365 289522 0.998167 - . ID=CGI_10011601; scaffold145 WUBlastX LINE_RTE-BovB 1138262 1138408 68 - . . scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold593 WUBlastX LINE_RTE-X 726163 726467 47 - . . scaffold593 GLEAN mRNA 725148 726467 0.937779 - . ID=CGI_10022539; scaffold1476 WUBlastX LINE_CR1-L2 171503 171628 62 + . . scaffold1476 GLEAN mRNA 169615 179488 0.862141 + . ID=CGI_10009826; scaffold1821 WUBlastX LINE_L2 183886 184043 127 + . . scaffold1821 GLEAN mRNA 178597 184043 0.990901 - . ID=CGI_10011292; scaffold689 WUBlastX LINE_R2-Hero 269819 270187 203 + . . scaffold689 GLEAN mRNA 268555 270351 0.998685 - . ID=CGI_10014829; scaffold544 WUBlastX DNA_TcMar-Pogo 739066 739296 156 + . . scaffold544 GLEAN mRNA 727518 748903 0.982522 - . ID=CGI_10022583; scaffold917 WUBlastX DNA_Harbinger 154430 154546 41 + . . scaffold917 GLEAN mRNA 150992 179733 0.207364 - . ID=CGI_10011084; scaffold1241 WUBlastX LTR_Gypsy 40479 42041 257 + . . scaffold1241 GLEAN mRNA 33172 55862 0.858231 - . ID=CGI_10016418; scaffold1179 WUBlastX DNA_Harbinger 18300 18506 129 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold1898 WUBlastX LTR_Pao 309913 310449 247 - . . scaffold1898 GLEAN mRNA 306186 312813 0.889712 + . ID=CGI_10012220; scaffold583 WUBlastX LTR_DIRS 279966 280775 184 + . . scaffold583 GLEAN mRNA 279966 280898 0.998382 + . ID=CGI_10023617; scaffold1403 WUBlastX LTR_DIRS 612331 612819 184 - . . scaffold1403 GLEAN mRNA 612208 612819 0.999999 - . ID=CGI_10020188; scaffold1625 WUBlastX LINE_RTE-X 169737 169952 26 - . . scaffold1625 GLEAN mRNA 163230 175754 0.999993 - . ID=CGI_10007533; scaffold1603 WUBlastX LTR_Pao 334564 334644 21 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold38026 WUBlastX LTR_Gypsy 24684 24992 57 + . . scaffold38026 GLEAN mRNA 24330 29871 1 - . ID=CGI_10002428; scaffold1715 WUBlastX LINE_CR1-L2 570659 570967 145 + . . scaffold1715 GLEAN mRNA 550177 572188 0.407691 + . ID=CGI_10019686; scaffold42236 WUBlastX DNA_hAT 129454 129585 56 + . . scaffold42236 GLEAN mRNA 112501 136266 0.999117 + . ID=CGI_10006406; scaffold42236 WUBlastX DNA_hAT 129699 129764 23 + . . scaffold42236 GLEAN mRNA 112501 136266 0.999117 + . ID=CGI_10006406; scaffold42236 WUBlastX DNA_hAT 129980 130369 289 + . . scaffold42236 GLEAN mRNA 112501 136266 0.999117 + . ID=CGI_10006406; scaffold413 WUBlastX LINE_CR1-L2 736004 736555 173 + . . scaffold413 GLEAN mRNA 729457 747893 0.897312 - . ID=CGI_10022826; scaffold34282 WUBlastX LINE_RTE-X 8005 8271 130 - . . scaffold34282 GLEAN mRNA 2734 14490 1 - . ID=CGI_10001256; scaffold451 WUBlastX LTR_Gypsy 63962 64027 20 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold162 WUBlastX LINE_L1-Tx1 50374 50583 39 - . . scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; scaffold1750 WUBlastX LINE_RTE-X 18575 19537 115 + . . scaffold1750 GLEAN mRNA 8946 22537 0.686268 + . ID=CGI_10021461; scaffold271 WUBlastX LINE_L2 475704 476147 70 + . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold1750 WUBlastX DNA_hAT 229822 231213 454 + . . scaffold1750 GLEAN mRNA 229777 232957 1 + . ID=CGI_10021476; scaffold1750 WUBlastX DNA_hAT 229822 231213 454 + . . scaffold1750 GLEAN mRNA 227209 235623 0.823116 - . ID=CGI_10021475; scaffold1750 WUBlastX DNA_hAT 232273 232422 68 + . . scaffold1750 GLEAN mRNA 229777 232957 1 + . ID=CGI_10021476; scaffold1750 WUBlastX DNA_hAT 232273 232422 68 + . . scaffold1750 GLEAN mRNA 227209 235623 0.823116 - . ID=CGI_10021475; scaffold162 WUBlastX LINE_RTE-X 55629 55859 64 + . . scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; scaffold479 WUBlastX LTR_Ngaro 422522 423994 629 + . . scaffold479 GLEAN mRNA 420249 425742 0.99319 + . ID=CGI_10015702; scaffold847 WUBlastX LINE_L2 520646 521950 806 + . . scaffold847 GLEAN mRNA 512783 523785 0.999676 + . ID=CGI_10022281; scaffold1189 WUBlastX LINE_CR1 577183 577407 23 - . . scaffold1189 GLEAN mRNA 568608 577407 0.997699 + . ID=CGI_10023823; scaffold43258 WUBlastX LINE_L2 144430 144669 31 - . . scaffold43258 GLEAN mRNA 134740 154295 0.483992 + . ID=CGI_10009634; scaffold44006 WUBlastX LINE_CR1 17209 17301 80 + . . scaffold44006 GLEAN mRNA 9065 23431 0.999343 - . ID=CGI_10015569; scaffold1605 WUBlastX LINE_L2 12437 12709 33 - . . scaffold1605 GLEAN mRNA 11402 13497 0.727003 - . ID=CGI_10023340; scaffold392 WUBlastX LTR_Copia 89617 89760 22 - . . scaffold392 GLEAN mRNA 88876 89919 0.733296 - . ID=CGI_10024203; scaffold1817 WUBlastX LTR_Copia 28480 28845 45 + . . scaffold1817 GLEAN mRNA 9897 44966 0.453567 - . ID=CGI_10005250; scaffold801 WUBlastX DNA_hAT 87356 87670 73 + . . scaffold801 GLEAN mRNA 80933 88043 0.889853 + . ID=CGI_10024063; scaffold1000 WUBlastX DNA_hAT 256886 257053 49 + . . scaffold1000 GLEAN mRNA 254688 266328 0.650465 + . ID=CGI_10013084; scaffold266 WUBlastX DNA_hAT-Tip100 54669 54896 51 + . . scaffold266 GLEAN mRNA 46310 60131 0.998446 - . ID=CGI_10013346; scaffold43842 WUBlastX LINE_RTE-BovB 223132 223215 29 - . . scaffold43842 GLEAN mRNA 222782 252762 0.997279 - . ID=CGI_10013106; C36680 WUBlastX LINE_L2 10355 10420 21 - . . C36680 GLEAN mRNA 2216 22548 0.727902 - . ID=CGI_10002070; scaffold445 WUBlastX LTR_Gypsy 321126 321326 61 - . . scaffold445 GLEAN mRNA 299978 341164 0.811094 - . ID=CGI_10019444; scaffold621 WUBlastX LTR_Gypsy 154047 154258 27 - . . scaffold621 GLEAN mRNA 154047 155567 0.573337 - . ID=CGI_10017674; scaffold621 WUBlastX LTR_Gypsy 153332 154258 27 - . . scaffold621 GLEAN mRNA 127381 238205 0.796035 + . ID=CGI_10017672; scaffold1726 WUBlastX LTR_Gypsy 292401 292889 56 - . . scaffold1726 GLEAN mRNA 280850 293294 0.426779 - . ID=CGI_10015637; scaffold789 WUBlastX LTR_Gypsy 323620 323952 83 + . . scaffold789 GLEAN mRNA 321917 326732 0.597754 + . ID=CGI_10017201; scaffold789 WUBlastX LTR_Gypsy 323626 324021 68 + . . scaffold789 GLEAN mRNA 321917 326732 0.597754 + . ID=CGI_10017201; C31070 WUBlastX DNA_IS4EU 4331 5209 31 - . . C31070 GLEAN mRNA 4205 5578 0.992577 - . ID=CGI_10000699; scaffold1497 WUBlastX LINE_I 153377 153457 22 - . . scaffold1497 GLEAN mRNA 148119 156729 0.749146 - . ID=CGI_10006968; scaffold502 WUBlastX DNA_IS4EU 201428 201649 40 - . . scaffold502 GLEAN mRNA 200661 204123 0.612374 - . ID=CGI_10024316; scaffold453 WUBlastX DNA_Kolobok 302801 303007 30 - . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold1767 WUBlastX LTR_Copia 174026 174166 32 - . . scaffold1767 GLEAN mRNA 173957 180250 0.633694 - . ID=CGI_10016910; scaffold896 WUBlastX LINE_Proto2 123719 123949 43 + . . scaffold896 GLEAN mRNA 120712 129433 0.394415 + . ID=CGI_10022834; scaffold967 WUBlastX LINE_RTE-X 331778 332032 28 + . . scaffold967 GLEAN mRNA 330769 334091 1 + . ID=CGI_10015463; scaffold313 WUBlastX LINE_RTE-X 1189906 1190025 41 - . . scaffold313 GLEAN mRNA 1180096 1191800 0.492755 + . ID=CGI_10026643; scaffold1868 WUBlastX LINE_RTE-X 168873 168995 42 + . . scaffold1868 GLEAN mRNA 166977 179463 0.984982 - . ID=CGI_10007985; C34436 WUBlastX DNA_Sola 8265 8492 55 + . . C34436 GLEAN mRNA 5678 8936 0.999934 + . ID=CGI_10001295; scaffold41356 WUBlastX LINE_RTE-X 52399 52611 46 - . . scaffold41356 GLEAN mRNA 23583 56717 0.908715 - . ID=CGI_10004994; scaffold41356 WUBlastX LINE_RTE-X 52399 52611 46 - . . scaffold41356 GLEAN mRNA 49810 66673 0.811456 + . ID=CGI_10004995; scaffold1650 WUBlastX LTR_Copia 218670 219113 30 - . . scaffold1650 GLEAN mRNA 171974 251292 0.504113 - . ID=CGI_10017775; scaffold204 WUBlastX DNA_Harbinger 413873 414139 34 + . . scaffold204 GLEAN mRNA 394042 414406 0.339936 + . ID=CGI_10026106; scaffold1031 WUBlastX DNA_IS4EU 206716 206943 22 + . . scaffold1031 GLEAN mRNA 202896 208011 0.999658 - . ID=CGI_10019698; scaffold128 WUBlastX LINE_Penelope 94121 94699 34 - . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; scaffold1179 WUBlastX DNA_PiggyBac 1331836 1332051 36 - . . scaffold1179 GLEAN mRNA 1331773 1332764 0.992318 - . ID=CGI_10027421; scaffold33924 WUBlastX DNA_MuDR 304 585 48 + . . scaffold33924 GLEAN mRNA 262 597 0.999068 + . ID=CGI_10001172; scaffold1032 WUBlastX LINE_R2-Hero 708245 708958 27 + . . scaffold1032 GLEAN mRNA 707458 710864 0.590104 - . ID=CGI_10021705; scaffold1299 WUBlastX LINE_L1 140007 140579 95 - . . scaffold1299 GLEAN mRNA 132868 184987 0.923911 + . ID=CGI_10007586; scaffold378 WUBlastX LINE_L1-Tx1 255095 255250 108 - . . scaffold378 GLEAN mRNA 247048 256613 0.78919 - . ID=CGI_10017643; scaffold1036 WUBlastX DNA_Maverick 205544 205930 56 - . . scaffold1036 GLEAN mRNA 202062 206192 0.444605 - . ID=CGI_10019953; scaffold39096 WUBlastX LTR_Gypsy 22783 23196 74 + . . scaffold39096 GLEAN mRNA 2759 26289 0.999949 + . ID=CGI_10003146; scaffold681 WUBlastX DNA_TcMar-Fot1 64890 65081 73 - . . scaffold681 GLEAN mRNA 61241 68104 0.482696 + . ID=CGI_10014722; scaffold1362 WUBlastX LINE_RTE-X 698043 698309 24 - . . scaffold1362 GLEAN mRNA 691736 715477 0.999895 - . ID=CGI_10023954; scaffold1362 WUBlastX LINE_RTE-X 698354 698794 22 - . . scaffold1362 GLEAN mRNA 691736 715477 0.999895 - . ID=CGI_10023954; scaffold536 WUBlastX LINE_L2 88776 89441 93 + . . scaffold536 GLEAN mRNA 68482 93233 0.999348 + . ID=CGI_10006670; scaffold35444 WUBlastX LTR_Gypsy-Cigr 5925 6095 63 - . . scaffold35444 GLEAN mRNA 591 6430 0.999654 - . ID=CGI_10001555; scaffold1036 WUBlastX DNA_Maverick 205025 205123 39 - . . scaffold1036 GLEAN mRNA 202062 206192 0.444605 - . ID=CGI_10019953; scaffold381 WUBlastX LINE_Proto2 165580 166440 44 + . . scaffold381 GLEAN mRNA 121685 178510 0.998567 - . ID=CGI_10017555; scaffold925 WUBlastX LTR_DIRS 140537 141205 390 - . . scaffold925 GLEAN mRNA 124334 157225 0.393067 - . ID=CGI_10017412; scaffold1097 WUBlastX LTR_Gypsy 862384 862938 162 + . . scaffold1097 GLEAN mRNA 848149 863853 0.999116 + . ID=CGI_10024555; scaffold257 WUBlastX LTR_Gypsy 1098111 1098782 150 - . . scaffold257 GLEAN mRNA 1093944 1099430 0.999918 - . ID=CGI_10027941; scaffold413 WUBlastX LINE_L1-Tx1 10042 10311 22 - . . scaffold413 GLEAN mRNA 9716 19114 0.940957 - . ID=CGI_10022791; scaffold1307 WUBlastX LTR_Gypsy 331469 331624 45 + . . scaffold1307 GLEAN mRNA 323239 332767 0.901731 + . ID=CGI_10023754; scaffold453 WUBlastX LTR_Gypsy 304342 304941 286 + . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold1459 WUBlastX LTR_Gypsy 105614 109222 1229 + . . scaffold1459 GLEAN mRNA 92847 117435 0.999674 - . ID=CGI_10010107; scaffold1599 WUBlastX LTR_Gypsy 677122 678039 438 - . . scaffold1599 GLEAN mRNA 676136 688286 0.501311 - . ID=CGI_10027155; scaffold369 WUBlastX LINE_Penelope 161489 161947 30 + . . scaffold369 GLEAN mRNA 147278 163434 0.70167 + . ID=CGI_10006958; scaffold369 WUBlastX LINE_Penelope 162595 162900 123 + . . scaffold369 GLEAN mRNA 147278 163434 0.70167 + . ID=CGI_10006958; scaffold1018 WUBlastX LTR_Gypsy 550483 550596 33 - . . scaffold1018 GLEAN mRNA 547902 567181 0.39343 + . ID=CGI_10019779; scaffold37430 WUBlastX LTR_Pao 38154 38459 205 - . . scaffold37430 GLEAN mRNA 25525 41907 0.539363 + . ID=CGI_10002358; scaffold37430 WUBlastX LTR_Pao 38473 39795 579 - . . scaffold37430 GLEAN mRNA 25525 41907 0.539363 + . ID=CGI_10002358; scaffold896 WUBlastX LINE_RTE-X 437141 437596 46 - . . scaffold896 GLEAN mRNA 429849 443777 0.584747 + . ID=CGI_10022849; scaffold896 WUBlastX LINE_RTE-X 437141 437596 46 - . . scaffold896 GLEAN mRNA 434715 450263 0.551142 - . ID=CGI_10022850; scaffold1403 WUBlastX DNA_Sola 152807 153829 168 + . . scaffold1403 GLEAN mRNA 150469 154318 0.999879 + . ID=CGI_10020163; scaffold514 WUBlastX LTR_Gypsy 471715 471948 128 + . . scaffold514 GLEAN mRNA 444665 473776 0.661186 - . ID=CGI_10018365; scaffold514 WUBlastX LTR_Gypsy 472194 472424 66 + . . scaffold514 GLEAN mRNA 444665 473776 0.661186 - . ID=CGI_10018365; scaffold22 WUBlastX LINE_L2 1085079 1085324 34 + . . scaffold22 GLEAN mRNA 1079633 1088835 0.644932 - . ID=CGI_10028896; scaffold1893 WUBlastX DNA_Kolobok-IS4 202361 203050 205 - . . scaffold1893 GLEAN mRNA 199713 203993 0.999824 + . ID=CGI_10008861; scaffold20 WUBlastX DNA_TcMar-Fot1 4296 4970 197 - . . scaffold20 GLEAN mRNA 478 8308 1 - . ID=CGI_10023555; scaffold1186 WUBlastX LINE_L1-Tx1 236779 236850 44 + . . scaffold1186 GLEAN mRNA 224167 244631 0.351511 - . ID=CGI_10010599; scaffold43964 WUBlastX LINE_Penelope 329422 330063 162 + . . scaffold43964 GLEAN mRNA 323260 333228 0.634978 + . ID=CGI_10014658; scaffold772 WUBlastX DNA_TcMar-Tc1 174764 175300 222 - . . scaffold772 GLEAN mRNA 173305 179319 1 + . ID=CGI_10016584; scaffold1561 WUBlastX LINE_RTE-BovB 100353 100454 21 - . . scaffold1561 GLEAN mRNA 90687 107153 0.999946 - . ID=CGI_10005694; scaffold211 WUBlastX LINE_L2 969465 969518 21 + . . scaffold211 GLEAN mRNA 954777 972416 0.999996 - . ID=CGI_10026971; scaffold1213 WUBlastX LINE_L1-Tx1 420939 421763 37 + . . scaffold1213 GLEAN mRNA 408300 423198 0.400191 - . ID=CGI_10027450; scaffold1532 WUBlastX LTR_Gypsy 392123 393085 394 + . . scaffold1532 GLEAN mRNA 391874 403369 0.462643 + . ID=CGI_10028249; scaffold773 WUBlastX DNA_Maverick 235331 235966 410 - . . scaffold773 GLEAN mRNA 235107 267865 0.138953 - . ID=CGI_10011348; scaffold1179 WUBlastX LTR_Gypsy 22192 22623 334 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold317 WUBlastX DNA_hAT-hATw 136250 136708 121 + . . scaffold317 GLEAN mRNA 123249 146317 0.852803 + . ID=CGI_10019345; scaffold1862 WUBlastX LINE_L1-Tx1 189804 190298 352 + . . scaffold1862 GLEAN mRNA 170077 209119 0.953083 - . ID=CGI_10021893; scaffold1402 WUBlastX LINE_CR1-L2 343055 343711 43 + . . scaffold1402 GLEAN mRNA 333924 347546 0.999947 - . ID=CGI_10017589; scaffold43182 WUBlastX DNA_En-Spm 187889 189517 418 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold683 WUBlastX LINE_RTE-X 84158 84373 36 - . . scaffold683 GLEAN mRNA 80657 98109 0.999674 + . ID=CGI_10010356; scaffold36906 WUBlastX LTR_DIRS 17224 18072 338 - . . scaffold36906 GLEAN mRNA 239 18767 0.841273 + . ID=CGI_10002185; scaffold42 WUBlastX LTR_Ngaro 79054 79422 234 - . . scaffold42 GLEAN mRNA 77522 83143 0.592597 - . ID=CGI_10018905; scaffold42 WUBlastX LTR_Ngaro 79446 80180 481 - . . scaffold42 GLEAN mRNA 77522 83143 0.592597 - . ID=CGI_10018905; scaffold42 WUBlastX LTR_Ngaro 80174 80482 82 - . . scaffold42 GLEAN mRNA 77522 83143 0.592597 - . ID=CGI_10018905; scaffold1616 WUBlastX LTR_DIRS 91411 91638 50 + . . scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; scaffold257 WUBlastX LTR_Copia 1094723 1094959 59 - . . scaffold257 GLEAN mRNA 1093944 1099430 0.999918 - . ID=CGI_10027941; scaffold557 WUBlastX LINE_L1 389434 389763 28 - . . scaffold557 GLEAN mRNA 389014 397940 0.685724 - . ID=CGI_10017978; scaffold1101 WUBlastX LINE_CR1-L2 370711 370899 32 + . . scaffold1101 GLEAN mRNA 366979 390760 0.569292 + . ID=CGI_10023023; scaffold1476 WUBlastX LINE_CR1 171063 171215 63 + . . scaffold1476 GLEAN mRNA 169615 179488 0.862141 + . ID=CGI_10009826; scaffold43954 WUBlastX LINE_CR1 146684 146836 40 + . . scaffold43954 GLEAN mRNA 139153 149832 0.999998 - . ID=CGI_10014576; scaffold41740 WUBlastX LINE_L2 22213 22509 20 - . . scaffold41740 GLEAN mRNA 21190 30083 0.963667 - . ID=CGI_10005584; scaffold33466 WUBlastX LINE_CR1 7326 7511 28 + . . scaffold33466 GLEAN mRNA 1922 13916 0.999896 - . ID=CGI_10001069; scaffold43552 WUBlastX LINE_CR1 220199 220522 22 - . . scaffold43552 GLEAN mRNA 204428 227902 0.829194 - . ID=CGI_10011023; scaffold204 WUBlastX LINE_CR1 407459 407782 22 - . . scaffold204 GLEAN mRNA 394042 414406 0.339936 + . ID=CGI_10026106; scaffold1062 WUBlastX LTR_Gypsy 75968 76102 85 + . . scaffold1062 GLEAN mRNA 68876 80668 0.64555 + . ID=CGI_10005741; scaffold1715 WUBlastX LTR_Gypsy 333528 333641 29 + . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold1773 WUBlastX LTR_Gypsy 83864 84037 36 - . . scaffold1773 GLEAN mRNA 83391 85072 0.980126 - . ID=CGI_10011225; scaffold42392 WUBlastX LTR_Gypsy 148208 149065 23 - . . scaffold42392 GLEAN mRNA 146946 151067 0.782062 + . ID=CGI_10006786; scaffold75 WUBlastX DNA_Harbinger 43381 43677 67 - . . scaffold75 GLEAN mRNA 41103 44837 0.980383 + . ID=CGI_10005789; scaffold6 WUBlastX DNA_Harbinger 611426 611722 67 - . . scaffold6 GLEAN mRNA 604472 612930 0.854712 - . ID=CGI_10022329; scaffold1423 WUBlastX DNA_Harbinger 674007 674138 39 - . . scaffold1423 GLEAN mRNA 653919 675880 0.821976 - . ID=CGI_10025436; scaffold6 WUBlastX DNA_Harbinger 701998 702150 51 + . . scaffold6 GLEAN mRNA 701995 741494 0.270237 + . ID=CGI_10022334; scaffold1769 WUBlastX DNA_IS4EU 138540 138587 69 - . . scaffold1769 GLEAN mRNA 137555 138587 0.999507 - . ID=CGI_10009241; scaffold43076 WUBlastX DNA_IS4EU 68308 68583 40 - . . scaffold43076 GLEAN mRNA 66506 68912 0.997439 + . ID=CGI_10008761; scaffold1473 WUBlastX LINE_L1 15348 15608 58 - . . scaffold1473 GLEAN mRNA 13162 33966 0.99911 + . ID=CGI_10003509; scaffold41390 WUBlastX DNA_Kolobok-Hyd 61147 61284 26 - . . scaffold41390 GLEAN mRNA 60426 61284 0.672974 - . ID=CGI_10004990; scaffold1437 WUBlastX DNA_TcMar-Fot1 20625 20804 60 + . . scaffold1437 GLEAN mRNA 9816 21221 0.99909 + . ID=CGI_10003664; scaffold591 WUBlastX DNA_TcMar-Tc2 1079117 1079140 55 + . . scaffold591 GLEAN mRNA 1079117 1079341 0.732046 + . ID=CGI_10027597; scaffold1314 WUBlastX DNA_MuDR 131697 131954 56 + . . scaffold1314 GLEAN mRNA 129407 131981 0.985091 + . ID=CGI_10009308; C32532 WUBlastX LINE_I-Nimb 435 737 37 - . . C32532 GLEAN mRNA 384 737 0.987944 - . ID=CGI_10000908; scaffold1322 WUBlastX LINE_RTE-X 267480 267776 23 - . . scaffold1322 GLEAN mRNA 265135 302274 0.499623 + . ID=CGI_10019472; scaffold41380 WUBlastX LINE_RTE-BovB 67373 67651 33 - . . scaffold41380 GLEAN mRNA 65148 69310 0.636303 + . ID=CGI_10005041; scaffold43842 WUBlastX LINE_RTE-X 339586 339783 43 - . . scaffold43842 GLEAN mRNA 339574 339783 0.866307 - . ID=CGI_10013114; scaffold226 WUBlastX LINE_RTE-X 251619 251816 43 - . . scaffold226 GLEAN mRNA 251607 251816 0.999843 - . ID=CGI_10025347; scaffold43522 WUBlastX LINE_RTE-X 92491 92901 21 + . . scaffold43522 GLEAN mRNA 83396 104526 0.999468 + . ID=CGI_10010551; scaffold4 WUBlastX LINE_RTE-X 48228 48368 67 + . . scaffold4 GLEAN mRNA 42612 56029 0.999937 + . ID=CGI_10021161; scaffold336 WUBlastX LINE_RTE-X 216305 216421 27 + . . scaffold336 GLEAN mRNA 208327 217851 1 - . ID=CGI_10012569; scaffold471 WUBlastX LINE_RTE-BovB 88924 89076 56 - . . scaffold471 GLEAN mRNA 84725 99079 0.999744 + . ID=CGI_10027000; scaffold829 WUBlastX DNA_TcMar-Tigge 592809 592871 35 - . . scaffold829 GLEAN mRNA 577056 600770 0.812815 + . ID=CGI_10021152; scaffold332 WUBlastX LTR_Ngaro 411163 411711 31 - . . scaffold332 GLEAN mRNA 403551 412368 0.544643 + . ID=CGI_10020886; scaffold175 WUBlastX LTR_Gypsy 65677 66042 23 + . . scaffold175 GLEAN mRNA 65317 67044 0.999661 + . ID=CGI_10021303; scaffold315 WUBlastX LINE_RTE-X 305057 305173 30 + . . scaffold315 GLEAN mRNA 296779 330061 0.935948 + . ID=CGI_10020417; scaffold43136 WUBlastX LTR_Gypsy 7436 7635 71 + . . scaffold43136 GLEAN mRNA 7432 7635 0.999372 - . ID=CGI_10009000; scaffold911 WUBlastX DNA_En-Spm 168791 169216 44 + . . scaffold911 GLEAN mRNA 159613 170351 0.499121 + . ID=CGI_10012141; scaffold885 WUBlastX DNA_Kolobok 14164 14334 58 - . . scaffold885 GLEAN mRNA 11627 19636 0.352613 - . ID=CGI_10025184; scaffold1307 WUBlastX LINE_RTE-X 17943 18389 28 - . . scaffold1307 GLEAN mRNA 6251 45653 0.745308 + . ID=CGI_10023739; scaffold42466 WUBlastX LINE_RTE-X 114795 115088 48 + . . scaffold42466 GLEAN mRNA 111968 131665 0.500645 + . ID=CGI_10006942; scaffold522 WUBlastX LTR_Gypsy 555579 556106 45 - . . scaffold522 GLEAN mRNA 555460 561290 0.999999 + . ID=CGI_10020338; scaffold40080 WUBlastX LTR_Ngaro 61693 61962 109 - . . scaffold40080 GLEAN mRNA 45524 71991 0.583639 - . ID=CGI_10003845; scaffold917 WUBlastX DNA_IS4EU 148533 148595 30 + . . scaffold917 GLEAN mRNA 121193 151265 0.227919 + . ID=CGI_10011083; scaffold402 WUBlastX LINE_L1-Tx1 523747 524109 82 - . . scaffold402 GLEAN mRNA 514262 530560 0.999749 + . ID=CGI_10019333; scaffold962 WUBlastX LINE_CR1-L2 747656 747811 55 + . . scaffold962 GLEAN mRNA 737761 749184 0.279681 - . ID=CGI_10027664; scaffold43076 WUBlastX DNA_IS4EU 67645 67827 124 + . . scaffold43076 GLEAN mRNA 66506 68912 0.997439 + . ID=CGI_10008761; scaffold501 WUBlastX LINE_Penelope 1136747 1137046 38 + . . scaffold501 GLEAN mRNA 1134633 1191403 0.395005 - . ID=CGI_10027545; scaffold501 WUBlastX LINE_Penelope 1137013 1137153 35 + . . scaffold501 GLEAN mRNA 1134633 1191403 0.395005 - . ID=CGI_10027545; scaffold1314 WUBlastX DNA_Sola 24317 25072 22 + . . scaffold1314 GLEAN mRNA 24248 26243 0.657792 + . ID=CGI_10009303; scaffold204 WUBlastX LINE_CR1-L2 320815 321213 26 + . . scaffold204 GLEAN mRNA 318709 324303 0.610548 - . ID=CGI_10026103; scaffold1354 WUBlastX LINE_L2 174082 174249 31 - . . scaffold1354 GLEAN mRNA 170031 176711 0.9991 - . ID=CGI_10014934; scaffold77 WUBlastX LINE_L1-Tx1 665636 665965 57 + . . scaffold77 GLEAN mRNA 661837 671903 1 - . ID=CGI_10027988; scaffold664 WUBlastX LINE_CR1 221013 221303 74 - . . scaffold664 GLEAN mRNA 213415 231457 0.897817 + . ID=CGI_10021440; scaffold786 WUBlastX LINE_RTE-X 272404 272817 77 - . . scaffold786 GLEAN mRNA 267472 276923 0.985899 + . ID=CGI_10013705; scaffold635 WUBlastX LTR_Gypsy 116592 116681 22 - . . scaffold635 GLEAN mRNA 115264 124278 0.98729 - . ID=CGI_10008922; scaffold43574 WUBlastX LINE_R2-Hero 265933 266412 35 - . . scaffold43574 GLEAN mRNA 264140 268252 0.775763 + . ID=CGI_10010886; scaffold43574 WUBlastX LINE_R2-Hero 266375 266755 131 - . . scaffold43574 GLEAN mRNA 264140 268252 0.775763 + . ID=CGI_10010886; scaffold230 WUBlastX DNA_hAT-Tip100 129539 129691 29 - . . scaffold230 GLEAN mRNA 126666 144461 0.534748 - . ID=CGI_10011251; scaffold1021 WUBlastX RC_Helitron 693481 694107 207 + . . scaffold1021 GLEAN mRNA 692304 699453 0.992587 + . ID=CGI_10022506; scaffold43562 WUBlastX LINE_R2-Hero 62157 62963 115 + . . scaffold43562 GLEAN mRNA 921 63783 0.694747 + . ID=CGI_10011029; scaffold43562 WUBlastX LINE_R2-Hero 63122 63223 42 + . . scaffold43562 GLEAN mRNA 921 63783 0.694747 + . ID=CGI_10011029; scaffold1789 WUBlastX DNA_Kolobok 17573 17899 93 - . . scaffold1789 GLEAN mRNA 10291 23583 0.974284 + . ID=CGI_10003175; scaffold61 WUBlastX LINE_RTE-X 91091 91549 30 + . . scaffold61 GLEAN mRNA 83781 97404 0.999676 - . ID=CGI_10016342; scaffold156 WUBlastX LTR_Gypsy 1103361 1103792 69 - . . scaffold156 GLEAN mRNA 1094153 1105194 0.982183 - . ID=CGI_10026543; scaffold42128 WUBlastX LINE_L2 114954 115412 133 - . . scaffold42128 GLEAN mRNA 104720 121214 0.954298 - . ID=CGI_10006199; scaffold48 WUBlastX DNA_TcMar-Marin 126154 126405 168 + . . scaffold48 GLEAN mRNA 124474 140752 0.924637 + . ID=CGI_10023885; scaffold156 WUBlastX LTR_Gypsy 1103526 1103792 80 - . . scaffold156 GLEAN mRNA 1094153 1105194 0.982183 - . ID=CGI_10026543; scaffold35994 WUBlastX LTR_Gypsy 23930 24220 197 + . . scaffold35994 GLEAN mRNA 21382 24601 0.722015 + . ID=CGI_10001675; scaffold1322 WUBlastX LTR_Pao 408242 408406 46 - . . scaffold1322 GLEAN mRNA 394198 409376 0.999229 - . ID=CGI_10019477; scaffold1855 WUBlastX LINE_RTE-X 201065 201490 181 + . . scaffold1855 GLEAN mRNA 188156 207855 0.999324 - . ID=CGI_10008876; scaffold707 WUBlastX DNA_Harbinger 47981 48094 61 - . . scaffold707 GLEAN mRNA 28186 50322 0.998251 + . ID=CGI_10007721; scaffold1307 WUBlastX LTR_Gypsy 330696 331520 483 + . . scaffold1307 GLEAN mRNA 323239 332767 0.901731 + . ID=CGI_10023754; scaffold1307 WUBlastX LTR_Gypsy 331562 332701 1111 + . . scaffold1307 GLEAN mRNA 323239 332767 0.901731 + . ID=CGI_10023754; scaffold1597 WUBlastX DNA_hAT-Tip100 3111 3440 151 - . . scaffold1597 GLEAN mRNA 296 3638 1 - . ID=CGI_10011762; scaffold544 WUBlastX LTR_DIRS 564449 564691 117 + . . scaffold544 GLEAN mRNA 559869 574687 0.998045 - . ID=CGI_10022574; scaffold337 WUBlastX LTR_Gypsy 490375 490632 151 - . . scaffold337 GLEAN mRNA 483649 507534 0.56595 + . ID=CGI_10028067; scaffold597 WUBlastX LINE_RTE-X 35079 35504 20 - . . scaffold597 GLEAN mRNA 30096 40610 0.999676 + . ID=CGI_10004927; scaffold301 WUBlastX DNA_Sola 950913 951134 24 - . . scaffold301 GLEAN mRNA 935860 957762 0.976661 - . ID=CGI_10026737; scaffold61 WUBlastX LINE_L2 185211 186080 259 - . . scaffold61 GLEAN mRNA 164819 186758 0.205101 - . ID=CGI_10016346; scaffold38510 WUBlastX DNA_Sola 30058 30306 171 + . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold38510 WUBlastX DNA_Sola 31742 32158 120 + . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold847 WUBlastX LINE_L2 520355 521947 247 + . . scaffold847 GLEAN mRNA 512783 523785 0.999676 + . ID=CGI_10022281; scaffold610 WUBlastX LTR_Gypsy 566828 568198 388 + . . scaffold610 GLEAN mRNA 561259 570035 0.686247 - . ID=CGI_10021130; scaffold535 WUBlastX LINE_L2 565703 565780 45 + . . scaffold535 GLEAN mRNA 563508 572309 0.883286 + . ID=CGI_10020301; scaffold535 WUBlastX LINE_L2 566232 566645 131 + . . scaffold535 GLEAN mRNA 563508 572309 0.883286 + . ID=CGI_10020301; scaffold535 WUBlastX LINE_L2 566627 566806 49 + . . scaffold535 GLEAN mRNA 563508 572309 0.883286 + . ID=CGI_10020301; scaffold1244 WUBlastX LINE_Penelope 572029 572175 76 - . . scaffold1244 GLEAN mRNA 508938 634898 0.0392589 - . ID=CGI_10020838; scaffold1237 WUBlastX LTR_Gypsy 223030 224421 112 - . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold833 WUBlastX DNA_Academ 463710 463722 77 - . . scaffold833 GLEAN mRNA 463710 469468 0.999591 - . ID=CGI_10016746; scaffold833 WUBlastX DNA_Academ 463773 464843 264 - . . scaffold833 GLEAN mRNA 463710 469468 0.999591 - . ID=CGI_10016746; scaffold40134 WUBlastX DNA_Maverick 50113 50799 316 - . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold1154 WUBlastX DNA_PiggyBac 173841 175463 765 + . . scaffold1154 GLEAN mRNA 126524 188335 0.933838 - . ID=CGI_10026155; scaffold198 WUBlastX LINE_CR1-L2 1171222 1171365 61 - . . scaffold198 GLEAN mRNA 1155548 1172013 0.535042 + . ID=CGI_10027850; scaffold198 WUBlastX LINE_CR1-L2 1171222 1171365 61 - . . scaffold198 GLEAN mRNA 1169314 1180690 0.99935 - . ID=CGI_10027851; scaffold43182 WUBlastX LTR_Gypsy-Cigr 166546 166821 65 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold1179 WUBlastX LTR_Copia 910301 910573 51 - . . scaffold1179 GLEAN mRNA 910112 912193 0.727725 - . ID=CGI_10027392; scaffold1316 WUBlastX LTR_Copia 260887 261159 44 + . . scaffold1316 GLEAN mRNA 259603 261597 0.995793 + . ID=CGI_10016306; scaffold508 WUBlastX LTR_Copia 16243 16338 20 - . . scaffold508 GLEAN mRNA 12073 17406 0.968836 - . ID=CGI_10011191; scaffold43302 WUBlastX LTR_Copia 201529 201840 54 + . . scaffold43302 GLEAN mRNA 200845 202269 0.838494 + . ID=CGI_10009769; scaffold825 WUBlastX LTR_Copia 237174 237311 32 + . . scaffold825 GLEAN mRNA 233940 240386 0.881408 + . ID=CGI_10012713; scaffold546 WUBlastX DNA_hAT-Tip100 394018 394299 41 - . . scaffold546 GLEAN mRNA 387340 395941 0.945058 - . ID=CGI_10021003; scaffold43150 WUBlastX LINE_L1 107090 107659 48 + . . scaffold43150 GLEAN mRNA 101388 111532 0.998791 - . ID=CGI_10009032; scaffold1900 WUBlastX DNA_hAT 22351 22458 53 + . . scaffold1900 GLEAN mRNA 17727 24416 0.723538 + . ID=CGI_10017323; scaffold1900 WUBlastX DNA_hAT 22610 22735 49 + . . scaffold1900 GLEAN mRNA 17727 24416 0.723538 + . ID=CGI_10017323; scaffold107 WUBlastX LTR_Pao 551668 552039 29 - . . scaffold107 GLEAN mRNA 542463 558772 0.592352 + . ID=CGI_10025060; scaffold41210 WUBlastX LTR_Gypsy-Cigr 102622 102654 72 + . . scaffold41210 GLEAN mRNA 102622 102807 0.732703 + . ID=CGI_10004806; scaffold1031 WUBlastX LTR_DIRS 206313 206414 39 - . . scaffold1031 GLEAN mRNA 202896 208011 0.999658 - . ID=CGI_10019698; scaffold1031 WUBlastX LTR_DIRS 206401 206553 24 - . . scaffold1031 GLEAN mRNA 202896 208011 0.999658 - . ID=CGI_10019698; scaffold313 WUBlastX LTR_Ngaro 1022887 1023069 30 - . . scaffold313 GLEAN mRNA 1014206 1026476 0.354197 - . ID=CGI_10026633; scaffold128 WUBlastX LTR_Copia 283541 283651 21 + . . scaffold128 GLEAN mRNA 283454 283705 0.516047 - . ID=CGI_10021516; scaffold39134 WUBlastX LTR_Gypsy 45976 46020 22 + . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold1036 WUBlastX LTR_Gypsy 331301 331483 65 - . . scaffold1036 GLEAN mRNA 322076 338878 0.999998 + . ID=CGI_10019961; scaffold880 WUBlastX DNA_Harbinger 521305 521421 32 - . . scaffold880 GLEAN mRNA 520749 522391 1 - . ID=CGI_10022198; scaffold19 WUBlastX LTR_Gypsy 140706 140957 26 - . . scaffold19 GLEAN mRNA 112664 148277 0.596648 - . ID=CGI_10010836; scaffold140 WUBlastX RC_Helitron 315413 315553 24 - . . scaffold140 GLEAN mRNA 314931 325697 0.976053 - . ID=CGI_10020134; scaffold1199 WUBlastX RC_Helitron 47908 48087 29 - . . scaffold1199 GLEAN mRNA 46410 49371 0.592263 - . ID=CGI_10005923; scaffold42784 WUBlastX DNA_hAT-hATw 54848 55336 47 - . . scaffold42784 GLEAN mRNA 54212 62212 0.526003 + . ID=CGI_10007732; scaffold780 WUBlastX DNA_hAT-Hobo 440465 440617 71 - . . scaffold780 GLEAN mRNA 437873 449595 0.921743 + . ID=CGI_10024736; scaffold204 WUBlastX LINE_I 1012266 1012313 21 - . . scaffold204 GLEAN mRNA 981338 1035223 0.34759 - . ID=CGI_10026142; scaffold535 WUBlastX DNA_IS4EU 3227 3325 23 + . . scaffold535 GLEAN mRNA 109 7288 0.491277 + . ID=CGI_10020280; scaffold535 WUBlastX DNA_IS4EU 3963 4175 24 + . . scaffold535 GLEAN mRNA 109 7288 0.491277 + . ID=CGI_10020280; scaffold1377 WUBlastX DNA_IS4EU 183939 184094 33 + . . scaffold1377 GLEAN mRNA 179618 201716 0.456444 + . ID=CGI_10008623; scaffold1647 WUBlastX LINE_Penelope 188357 188800 22 - . . scaffold1647 GLEAN mRNA 187635 201366 0.525082 + . ID=CGI_10008148; scaffold1020 WUBlastX DNA_P 11334 11606 48 + . . scaffold1020 GLEAN mRNA 10748 11618 1 + . ID=CGI_10012847; scaffold58 WUBlastX DNA_P 778454 778639 23 + . . scaffold58 GLEAN mRNA 776038 784085 0.259197 - . ID=CGI_10023164; scaffold43660 WUBlastX LINE_Penelope 128021 128191 38 - . . scaffold43660 GLEAN mRNA 125748 138289 0.998274 + . ID=CGI_10011663; scaffold626 WUBlastX LINE_Penelope 482965 483192 73 - . . scaffold626 GLEAN mRNA 474315 488242 0.98805 - . ID=CGI_10020000; scaffold1096 WUBlastX DNA_TcMar-Fot1 127313 127426 51 + . . scaffold1096 GLEAN mRNA 127172 128535 0.984969 + . ID=CGI_10006456; scaffold42948 WUBlastX DNA_TcMar-Marin 195581 195661 27 + . . scaffold42948 GLEAN mRNA 186071 196987 0.150089 + . ID=CGI_10008236; scaffold343 WUBlastX LINE_L1 647870 647947 39 - . . scaffold343 GLEAN mRNA 643828 662585 1 - . ID=CGI_10021771; scaffold204 WUBlastX DNA_Kolobok-Hyd 395227 395301 42 + . . scaffold204 GLEAN mRNA 394042 414406 0.339936 + . ID=CGI_10026106; scaffold1865 WUBlastX LINE_L1-Tx1 236945 237124 31 - . . scaffold1865 GLEAN mRNA 222891 259212 0.998765 - . ID=CGI_10013544; scaffold57 WUBlastX LINE_RTE-BovB 445911 446015 54 - . . scaffold57 GLEAN mRNA 444980 452251 1 + . ID=CGI_10020561; scaffold588 WUBlastX LINE_Penelope 134415 134600 39 - . . scaffold588 GLEAN mRNA 132834 155339 0.82921 + . ID=CGI_10016211; scaffold70 WUBlastX LINE_RTE-BovB 691818 691952 32 + . . scaffold70 GLEAN mRNA 689757 708725 0.811083 - . ID=CGI_10024788; scaffold549 WUBlastX LINE_RTE-X 8416 8481 39 - . . scaffold549 GLEAN mRNA 463 9456 0.999993 + . ID=CGI_10004100; scaffold549 WUBlastX LINE_RTE-X 8536 8565 29 - . . scaffold549 GLEAN mRNA 463 9456 0.999993 + . ID=CGI_10004100; scaffold780 WUBlastX DNA_Maverick 465103 465387 32 - . . scaffold780 GLEAN mRNA 451059 466814 0.999651 - . ID=CGI_10024737; scaffold1347 WUBlastX DNA_Maverick 326289 326441 27 + . . scaffold1347 GLEAN mRNA 315464 333991 0.924019 + . ID=CGI_10012984; scaffold41242 WUBlastX LTR_ERV-Lenti 30209 30290 57 + . . scaffold41242 GLEAN mRNA 30075 30290 0.999372 + . ID=CGI_10004882; scaffold1219 WUBlastX LINE_Dong-R4 870640 870870 51 - . . scaffold1219 GLEAN mRNA 868848 874682 0.999351 + . ID=CGI_10024304; scaffold145 WUBlastX LINE_RTE-BovB 1139494 1139739 35 - . . scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold1093 WUBlastX DNA_Sola 424848 425048 59 + . . scaffold1093 GLEAN mRNA 421292 452469 0.981582 + . ID=CGI_10019808; scaffold42306 WUBlastX LTR_DIRS 123483 123716 69 - . . scaffold42306 GLEAN mRNA 115556 155578 0.855145 + . ID=CGI_10006611; scaffold459 WUBlastX DNA_TcMar-Marin 157606 157785 47 - . . scaffold459 GLEAN mRNA 142513 160346 0.813912 - . ID=CGI_10018171; scaffold388 WUBlastX LINE_RTE-X 220523 220732 34 - . . scaffold388 GLEAN mRNA 216874 221663 0.662264 - . ID=CGI_10020466; scaffold388 WUBlastX LINE_RTE-X 220523 220732 34 - . . scaffold388 GLEAN mRNA 211826 226750 0.996237 + . ID=CGI_10020465; scaffold579 WUBlastX DNA_TcMar-Tc1 207172 207456 67 + . . scaffold579 GLEAN mRNA 193436 221323 0.863149 + . ID=CGI_10011264; scaffold1585 WUBlastX LINE_L1-Tx1 173740 173865 36 - . . scaffold1585 GLEAN mRNA 167748 175810 0.997972 + . ID=CGI_10012594; scaffold929 WUBlastX LINE_CR1-L2 124656 124916 69 + . . scaffold929 GLEAN mRNA 116400 138361 0.987262 + . ID=CGI_10006345; scaffold1831 WUBlastX DNA_Harbinger 25147 25302 68 + . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold632 WUBlastX LINE_L1 485766 486173 42 + . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold304 WUBlastX LINE_RTE-BovB 329100 329300 88 - . . scaffold304 GLEAN mRNA 327782 339627 0.999019 - . ID=CGI_10016567; scaffold722 WUBlastX DNA_TcMar-Marin 242506 242664 73 - . . scaffold722 GLEAN mRNA 213107 274814 0.920529 - . ID=CGI_10012201; scaffold43 WUBlastX LINE_RTE-X 574549 574812 85 + . . scaffold43 GLEAN mRNA 558255 582492 0.807709 - . ID=CGI_10021361; scaffold448 WUBlastX LINE_CR1-L2 66749 66925 21 + . . scaffold448 GLEAN mRNA 53576 85492 0.998765 + . ID=CGI_10024929; scaffold286 WUBlastX LTR_Pao 288247 288477 124 - . . scaffold286 GLEAN mRNA 282191 289004 0.700364 - . ID=CGI_10015966; scaffold39268 WUBlastX DNA_En-Spm 51125 52084 24 - . . scaffold39268 GLEAN mRNA 37983 58849 0.736622 - . ID=CGI_10003275; scaffold43920 WUBlastX DNA_Harbinger 319512 319862 73 + . . scaffold43920 GLEAN mRNA 309875 322859 0.642175 + . ID=CGI_10013999; scaffold99 WUBlastX LINE_RTE-X 31401 31517 52 - . . scaffold99 GLEAN mRNA 22545 38354 0.404855 + . ID=CGI_10021189; scaffold610 WUBlastX LINE_L2 239091 239360 132 - . . scaffold610 GLEAN mRNA 239004 244016 1 + . ID=CGI_10021102; scaffold1788 WUBlastX DNA_Helitron 46187 46294 22 - . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold689 WUBlastX LINE_RTE-X 167370 169031 703 + . . scaffold689 GLEAN mRNA 162763 181677 0.999 - . ID=CGI_10014826; scaffold1800 WUBlastX LINE_CR1 262239 262388 52 - . . scaffold1800 GLEAN mRNA 251153 263258 0.999949 - . ID=CGI_10016404; scaffold1704 WUBlastX LINE_RTE-X 149673 150116 94 + . . scaffold1704 GLEAN mRNA 130337 165249 0.994715 + . ID=CGI_10010170; scaffold1186 WUBlastX LTR_Gypsy 210954 212435 377 + . . scaffold1186 GLEAN mRNA 187396 222353 0.578632 + . ID=CGI_10010597; scaffold461 WUBlastX LTR_Gypsy-Cigr 507530 508102 199 + . . scaffold461 GLEAN mRNA 502998 509730 0.979735 + . ID=CGI_10020117; scaffold1842 WUBlastX LINE_L2 58675 59151 101 - . . scaffold1842 GLEAN mRNA 42810 63379 0.990768 - . ID=CGI_10003201; scaffold241 WUBlastX LTR_Pao 82533 83162 309 + . . scaffold241 GLEAN mRNA 81964 102317 0.534439 + . ID=CGI_10025091; scaffold41472 WUBlastX DNA_Harbinger 18334 18795 204 + . . scaffold41472 GLEAN mRNA 5767 21457 0.999674 - . ID=CGI_10005140; scaffold847 WUBlastX RC_Helitron 436649 436933 21 - . . scaffold847 GLEAN mRNA 435807 447835 0.572478 + . ID=CGI_10022278; scaffold496 WUBlastX LTR_Ngaro 285736 285975 135 + . . scaffold496 GLEAN mRNA 284554 289142 0.934292 + . ID=CGI_10022451; scaffold496 WUBlastX LTR_Ngaro 285980 286087 48 + . . scaffold496 GLEAN mRNA 284554 289142 0.934292 + . ID=CGI_10022451; scaffold496 WUBlastX LTR_Ngaro 286119 286403 73 + . . scaffold496 GLEAN mRNA 284554 289142 0.934292 + . ID=CGI_10022451; scaffold43388 WUBlastX LINE_CR1 221544 222995 558 + . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold1476 WUBlastX LINE_RTE-X 173026 173754 157 - . . scaffold1476 GLEAN mRNA 169615 179488 0.862141 + . ID=CGI_10009826; scaffold885 WUBlastX LINE_L1 1011064 1011912 154 + . . scaffold885 GLEAN mRNA 1005329 1048267 0.991835 - . ID=CGI_10025234; scaffold42904 WUBlastX LTR_DIRS 43690 43869 88 + . . scaffold42904 GLEAN mRNA 39898 45913 0.830856 + . ID=CGI_10008098; scaffold42904 WUBlastX LTR_DIRS 43881 44162 177 + . . scaffold42904 GLEAN mRNA 39898 45913 0.830856 + . ID=CGI_10008098; scaffold655 WUBlastX LINE_L1 206657 206752 22 + . . scaffold655 GLEAN mRNA 206640 213790 0.998219 + . ID=CGI_10014952; scaffold1643 WUBlastX LTR_Pao 105568 106125 204 + . . scaffold1643 GLEAN mRNA 104668 107388 0.99993 + . ID=CGI_10008364; scaffold1174 WUBlastX DNA_TcMar-Fot1 1089685 1090149 154 + . . scaffold1174 GLEAN mRNA 1080209 1093364 0.548358 + . ID=CGI_10026081; scaffold1782 WUBlastX DNA_Crypton 35354 35971 338 - . . scaffold1782 GLEAN mRNA 27311 46530 0.718451 + . ID=CGI_10004241; scaffold354 WUBlastX LINE_L2 489301 490191 259 - . . scaffold354 GLEAN mRNA 486223 493126 0.637462 - . ID=CGI_10025720; scaffold563 WUBlastX LINE_L1 511110 511463 29 + . . scaffold563 GLEAN mRNA 469996 513756 0.653133 + . ID=CGI_10019843; scaffold1877 WUBlastX LINE_RTE-X 298378 298944 206 + . . scaffold1877 GLEAN mRNA 295978 306967 1 + . ID=CGI_10011963; scaffold150 WUBlastX LTR_DIRS 1352745 1353680 458 - . . scaffold150 GLEAN mRNA 1351630 1358824 0.998084 - . ID=CGI_10028676; scaffold1788 WUBlastX DNA_hAT-Tip100 6293 7417 492 + . . scaffold1788 GLEAN mRNA 1232 23874 0.618655 + . ID=CGI_10019910; scaffold1171 WUBlastX LINE_L1-Tx1 12442 12699 58 + . . scaffold1171 GLEAN mRNA 12089 17698 0.989581 + . ID=CGI_10002857; scaffold419 WUBlastX LTR_Gypsy 684532 684873 29 - . . scaffold419 GLEAN mRNA 671072 685906 0.998967 - . ID=CGI_10028358; scaffold5 WUBlastX LTR_DIRS 48399 49421 834 + . . scaffold5 GLEAN mRNA 43954 49424 0.676364 + . ID=CGI_10012924; scaffold5 WUBlastX LTR_DIRS 48399 49421 834 + . . scaffold5 GLEAN mRNA 46548 64040 0.730165 - . ID=CGI_10012925; scaffold1221 WUBlastX LTR_Gypsy-Cigr 68253 69320 194 - . . scaffold1221 GLEAN mRNA 56411 69596 0.696179 + . ID=CGI_10019728; scaffold481 WUBlastX LINE_CR1 1234669 1234854 74 + . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold43804 WUBlastX LINE_CR1 171386 171976 43 - . . scaffold43804 GLEAN mRNA 171251 172006 1 - . ID=CGI_10012556; scaffold1321 WUBlastX LTR_Copia 136624 136761 41 - . . scaffold1321 GLEAN mRNA 136608 137201 1 - . ID=CGI_10010662; scaffold1589 WUBlastX LTR_Copia 280111 280314 34 - . . scaffold1589 GLEAN mRNA 279757 287553 0.968345 - . ID=CGI_10024110; scaffold317 WUBlastX LTR_Copia 569327 569626 24 - . . scaffold317 GLEAN mRNA 568959 575632 0.98413 - . ID=CGI_10019362; scaffold44054 WUBlastX DNA_hAT 220321 220566 63 - . . scaffold44054 GLEAN mRNA 218509 220647 0.531587 - . ID=CGI_10016164; scaffold934 WUBlastX LINE_L1 267995 268120 64 - . . scaffold934 GLEAN mRNA 262254 282098 1 - . ID=CGI_10015446; scaffold736 WUBlastX LTR_Gypsy 83406 83561 64 - . . scaffold736 GLEAN mRNA 77478 84874 0.99909 - . ID=CGI_10004599; scaffold1316 WUBlastX LTR_Gypsy 260596 260916 57 + . . scaffold1316 GLEAN mRNA 259603 261597 0.995793 + . ID=CGI_10016306; scaffold70 WUBlastX LINE_CR1-L2 517972 518127 43 + . . scaffold70 GLEAN mRNA 505766 521255 0.349382 + . ID=CGI_10024775; scaffold70 WUBlastX LINE_CR1-L2 517972 518127 43 + . . scaffold70 GLEAN mRNA 501356 529120 0.998611 - . ID=CGI_10024774; scaffold37712 WUBlastX LTR_Gypsy 37291 37389 67 - . . scaffold37712 GLEAN mRNA 15194 37462 0.403354 - . ID=CGI_10002463; scaffold433 WUBlastX LTR_DIRS 317651 318013 25 - . . scaffold433 GLEAN mRNA 314553 319812 0.999992 + . ID=CGI_10027063; scaffold1249 WUBlastX LINE_L2 260900 260950 20 - . . scaffold1249 GLEAN mRNA 253670 268651 0.545459 - . ID=CGI_10019058; scaffold35446 WUBlastX LTR_Gypsy 17655 17729 24 - . . scaffold35446 GLEAN mRNA 11417 21109 0.682042 + . ID=CGI_10001510; scaffold1321 WUBlastX LTR_Gypsy 129490 129996 25 - . . scaffold1321 GLEAN mRNA 124908 130065 0.986166 - . ID=CGI_10010661; scaffold1704 WUBlastX LTR_Gypsy 26621 27079 52 + . . scaffold1704 GLEAN mRNA 12405 27811 0.998148 + . ID=CGI_10010159; scaffold146 WUBlastX LTR_Gypsy 842599 842772 27 + . . scaffold146 GLEAN mRNA 839937 845451 0.977393 + . ID=CGI_10024922; scaffold34106 WUBlastX LTR_Gypsy 11648 12115 71 + . . scaffold34106 GLEAN mRNA 1207 14937 0.504518 - . ID=CGI_10001211; scaffold934 WUBlastX RC_Helitron 271455 271595 36 + . . scaffold934 GLEAN mRNA 262254 282098 1 - . ID=CGI_10015446; scaffold1584 WUBlastX RC_Helitron 342965 343297 74 - . . scaffold1584 GLEAN mRNA 342917 343357 0.69447 - . ID=CGI_10015089; scaffold113 WUBlastX DNA_hAT-Hobo 590418 590549 75 - . . scaffold113 GLEAN mRNA 582017 590807 0.980826 - . ID=CGI_10021294; scaffold40680 WUBlastX DNA_Harbinger 25006 25194 53 + . . scaffold40680 GLEAN mRNA 16 36776 0.246623 - . ID=CGI_10004353; scaffold1000 WUBlastX DNA_hAT-Ac 256913 257173 64 + . . scaffold1000 GLEAN mRNA 254688 266328 0.650465 + . ID=CGI_10013084; scaffold146 WUBlastX DNA_hAT-hATw 697913 698413 28 - . . scaffold146 GLEAN mRNA 671163 748128 0.737513 - . ID=CGI_10024919; scaffold1000 WUBlastX DNA_hAT-Ac 256748 256888 23 + . . scaffold1000 GLEAN mRNA 254688 266328 0.650465 + . ID=CGI_10013084; scaffold1788 WUBlastX DNA_Kolobok-IS4 65013 65135 40 + . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold13 WUBlastX DNA_IS4EU 192130 193032 28 + . . scaffold13 GLEAN mRNA 172056 194004 0.998501 + . ID=CGI_10013207; scaffold469 WUBlastX LTR_ERVK 346341 346448 40 - . . scaffold469 GLEAN mRNA 345885 346673 0.967462 - . ID=CGI_10024673; scaffold99 WUBlastX LINE_I 357583 358281 35 + . . scaffold99 GLEAN mRNA 346755 358299 0.999992 + . ID=CGI_10021201; scaffold1442 WUBlastX LTR_ERV1 74907 75128 24 + . . scaffold1442 GLEAN mRNA 72882 75260 0.853071 + . ID=CGI_10003587; scaffold967 WUBlastX LTR_ERV1 129714 129893 24 - . . scaffold967 GLEAN mRNA 127443 132839 0.997345 + . ID=CGI_10015454; scaffold867 WUBlastX LINE_L2 1058485 1058586 32 - . . scaffold867 GLEAN mRNA 1057405 1070089 0.30835 - . ID=CGI_10026260; scaffold43702 WUBlastX LINE_L1 215134 215208 50 + . . scaffold43702 GLEAN mRNA 215134 215346 0.618241 + . ID=CGI_10011914; scaffold42656 WUBlastX LINE_L1-Tx1 62733 62993 40 - . . scaffold42656 GLEAN mRNA 57925 65294 1 - . ID=CGI_10007413; scaffold1189 WUBlastX LINE_L1-Tx1 141221 141424 38 - . . scaffold1189 GLEAN mRNA 135660 152717 1 + . ID=CGI_10023800; scaffold867 WUBlastX LINE_L1-Tx1 254126 254347 45 + . . scaffold867 GLEAN mRNA 253182 264678 0.938203 - . ID=CGI_10026215; scaffold40164 WUBlastX LINE_L1 7681 7743 24 + . . scaffold40164 GLEAN mRNA 2839 12364 0.429437 - . ID=CGI_10003898; scaffold1686 WUBlastX LINE_L1 58930 59373 22 - . . scaffold1686 GLEAN mRNA 58573 59710 0.792752 - . ID=CGI_10005075; scaffold1174 WUBlastX DNA_Kolobok-Hyd 1082467 1082823 66 + . . scaffold1174 GLEAN mRNA 1080209 1093364 0.548358 + . ID=CGI_10026081; scaffold370 WUBlastX DNA_TcMar-Marin 61198 61380 23 + . . scaffold370 GLEAN mRNA 48035 69825 0.999273 - . ID=CGI_10025517; scaffold1283 WUBlastX DNA_TcMar-Marin 250376 250573 27 + . . scaffold1283 GLEAN mRNA 240961 258563 0.432673 - . ID=CGI_10011796; scaffold22 WUBlastX LINE_Penelope 1076206 1076580 23 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold409 WUBlastX LTR_Gypsy 84136 84660 29 - . . scaffold409 GLEAN mRNA 76958 91978 0.642495 - . ID=CGI_10004319; scaffold578 WUBlastX DNA_P 26237 26533 60 - . . scaffold578 GLEAN mRNA 19761 26602 0.244564 - . ID=CGI_10015109; scaffold44054 WUBlastX DNA_P 428880 429017 25 - . . scaffold44054 GLEAN mRNA 428351 451614 0.884147 - . ID=CGI_10016180; scaffold215 WUBlastX DNA_Maverick 109434 109844 59 + . . scaffold215 GLEAN mRNA 109419 110448 0.272728 + . ID=CGI_10006643; scaffold1221 WUBlastX DNA_PiggyBac 512554 512631 48 - . . scaffold1221 GLEAN mRNA 505287 514877 0.549954 - . ID=CGI_10019748; scaffold1480 WUBlastX LINE_R2 77303 77470 27 - . . scaffold1480 GLEAN mRNA 77249 77533 0.999102 - . ID=CGI_10008636; scaffold165 WUBlastX LINE_RTE-X 36208 36555 32 - . . scaffold165 GLEAN mRNA 35293 36948 0.531436 - . ID=CGI_10015310; scaffold41356 WUBlastX LINE_RTE-X 57804 58178 44 - . . scaffold41356 GLEAN mRNA 49810 66673 0.811456 + . ID=CGI_10004995; scaffold156 WUBlastX LINE_RTE-X 327888 328073 56 - . . scaffold156 GLEAN mRNA 326940 337481 0.63561 + . ID=CGI_10026496; scaffold1017 WUBlastX LINE_RTE-X 58507 58833 34 - . . scaffold1017 GLEAN mRNA 46180 63837 0.999676 - . ID=CGI_10024980; scaffold410 WUBlastX LTR_DIRS 305542 305790 26 - . . scaffold410 GLEAN mRNA 298599 310174 0.996652 + . ID=CGI_10020635; scaffold421 WUBlastX LINE_RTE-X 247281 247571 48 - . . scaffold421 GLEAN mRNA 232502 254015 0.999281 - . ID=CGI_10012158; scaffold1299 WUBlastX LINE_L1-Tx1 138488 138685 47 - . . scaffold1299 GLEAN mRNA 132868 184987 0.923911 + . ID=CGI_10007586; scaffold1827 WUBlastX LTR_Copia 340967 341509 27 - . . scaffold1827 GLEAN mRNA 310035 354687 0.394933 - . ID=CGI_10013809; scaffold714 WUBlastX DNA_TcMar-Tc1 398937 399152 51 + . . scaffold714 GLEAN mRNA 380562 399951 0.999675 - . ID=CGI_10016647; scaffold535 WUBlastX DNA_TcMar-Tc1 117066 117137 51 + . . scaffold535 GLEAN mRNA 111373 154699 0.592399 + . ID=CGI_10020283; scaffold1286 WUBlastX LINE_CR1 114228 114698 50 - . . scaffold1286 GLEAN mRNA 98601 123345 0.396375 - . ID=CGI_10009514; scaffold1172 WUBlastX DNA_Kolobok 136358 136528 68 - . . scaffold1172 GLEAN mRNA 136358 137015 0.533411 - . ID=CGI_10006910; scaffold1172 WUBlastX DNA_Kolobok 136337 136528 68 - . . scaffold1172 GLEAN mRNA 130831 145007 0.99998 + . ID=CGI_10006909; scaffold6 WUBlastX DNA_hAT 723394 723519 58 + . . scaffold6 GLEAN mRNA 701995 741494 0.270237 + . ID=CGI_10022334; scaffold43634 WUBlastX DNA_hAT-Ac 63349 63501 87 - . . scaffold43634 GLEAN mRNA 56957 73985 0.67193 + . ID=CGI_10011531; scaffold1518 WUBlastX LINE_Penelope 210560 211144 39 + . . scaffold1518 GLEAN mRNA 210347 219718 0.999512 + . ID=CGI_10017800; scaffold1385 WUBlastX LINE_RTE-X 24613 24834 30 + . . scaffold1385 GLEAN mRNA 22815 31330 0.957817 - . ID=CGI_10013834; scaffold833 WUBlastX LINE_R2 465796 465885 22 - . . scaffold833 GLEAN mRNA 463710 469468 0.999591 - . ID=CGI_10016746; scaffold1322 WUBlastX LTR_Ngaro 588288 588494 34 - . . scaffold1322 GLEAN mRNA 571511 590238 0.999351 - . ID=CGI_10019486; scaffold184 WUBlastX LINE_Penelope 160503 161024 67 - . . scaffold184 GLEAN mRNA 157859 165368 0.999999 - . ID=CGI_10014796; scaffold664 WUBlastX LINE_RTE-X 503138 503419 52 - . . scaffold664 GLEAN mRNA 503105 503419 0.999344 - . ID=CGI_10021453; scaffold751 WUBlastX DNA_TcMar-Tc1 155647 155913 60 - . . scaffold751 GLEAN mRNA 154176 165740 0.999947 - . ID=CGI_10017388; scaffold1736 WUBlastX LINE_L1-Tx1 272605 272766 22 + . . scaffold1736 GLEAN mRNA 268738 276421 0.999662 + . ID=CGI_10020962; scaffold1599 WUBlastX LINE_L1-Tx1 546981 547286 31 + . . scaffold1599 GLEAN mRNA 541949 554448 0.648153 + . ID=CGI_10027151; scaffold1619 WUBlastX DNA_Kolobok-Hyd 240731 240799 27 + . . scaffold1619 GLEAN mRNA 240414 243906 0.998486 + . ID=CGI_10010223; scaffold1221 WUBlastX DNA_PiggyBac 511248 511319 22 - . . scaffold1221 GLEAN mRNA 505287 514877 0.549954 - . ID=CGI_10019748; scaffold1188 WUBlastX LINE_CR1-L2 657098 657391 22 - . . scaffold1188 GLEAN mRNA 648038 660238 0.573951 - . ID=CGI_10025493; scaffold1107 WUBlastX LINE_L1 42683 42988 81 - . . scaffold1107 GLEAN mRNA 25384 68274 0.797312 + . ID=CGI_10004768; scaffold3 WUBlastX LINE_L1 805839 806372 36 + . . scaffold3 GLEAN mRNA 805376 811617 0.747251 + . ID=CGI_10027304; scaffold266 WUBlastX LINE_RTE-X 246066 246425 37 - . . scaffold266 GLEAN mRNA 236877 257451 0.649405 - . ID=CGI_10013355; scaffold867 WUBlastX LINE_L1-Tx1 256334 256414 21 + . . scaffold867 GLEAN mRNA 253182 264678 0.938203 - . ID=CGI_10026215; scaffold42890 WUBlastX LINE_RTE-X 85984 86151 38 + . . scaffold42890 GLEAN mRNA 82665 91191 0.716263 - . ID=CGI_10008040; scaffold42890 WUBlastX LINE_RTE-X 85984 86151 38 + . . scaffold42890 GLEAN mRNA 76174 91402 0.99612 + . ID=CGI_10008039; scaffold43388 WUBlastX LINE_CR1 230520 231257 24 + . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold116 WUBlastX LINE_RTE-X 212436 212777 102 + . . scaffold116 GLEAN mRNA 199454 222023 0.8905 - . ID=CGI_10009421; scaffold1163 WUBlastX LINE_RTE-X 198380 198577 129 - . . scaffold1163 GLEAN mRNA 183718 207332 0.990122 - . ID=CGI_10009351; scaffold419 WUBlastX LINE_RTE-BovB 252170 252457 45 + . . scaffold419 GLEAN mRNA 243081 266501 0.999183 - . ID=CGI_10028337; scaffold760 WUBlastX LINE_L1-Tx1 130657 130962 57 + . . scaffold760 GLEAN mRNA 117770 147032 0.706686 + . ID=CGI_10023976; scaffold149 WUBlastX DNA_Harbinger 1002246 1002368 76 + . . scaffold149 GLEAN mRNA 989278 1013104 0.999502 - . ID=CGI_10025337; scaffold685 WUBlastX DNA_Kolobok 84267 84458 69 + . . scaffold685 GLEAN mRNA 83408 84482 1 + . ID=CGI_10004493; scaffold1882 WUBlastX LTR_Pao 18860 19432 131 + . . scaffold1882 GLEAN mRNA 8742 29941 0.650712 + . ID=CGI_10010492; scaffold39268 WUBlastX LINE_RTE-X 56667 57146 116 + . . scaffold39268 GLEAN mRNA 37983 58849 0.736622 - . ID=CGI_10003275; scaffold1352 WUBlastX LINE_RTE-X 403722 405050 37 + . . scaffold1352 GLEAN mRNA 400458 408667 0.333165 + . ID=CGI_10018425; scaffold1823 WUBlastX DNA_Kolobok-IS4 26459 27103 78 + . . scaffold1823 GLEAN mRNA 25975 45605 0.99537 + . ID=CGI_10005169; scaffold40440 WUBlastX LINE_Penelope 53950 54405 33 + . . scaffold40440 GLEAN mRNA 51085 65707 0.320377 - . ID=CGI_10004144; scaffold1858 WUBlastX LINE_L1 121944 122204 77 - . . scaffold1858 GLEAN mRNA 114362 126826 0.999351 - . ID=CGI_10010447; scaffold40208 WUBlastX RC_Helitron 32816 33775 573 + . . scaffold40208 GLEAN mRNA 30839 69631 0.999064 + . ID=CGI_10003954; scaffold40208 WUBlastX RC_Helitron 33775 35592 1020 + . . scaffold40208 GLEAN mRNA 30839 69631 0.999064 + . ID=CGI_10003954; scaffold1625 WUBlastX LINE_RTE-X 170448 171479 57 - . . scaffold1625 GLEAN mRNA 163230 175754 0.999993 - . ID=CGI_10007533; scaffold847 WUBlastX LTR_Pao 277741 280167 1935 - . . scaffold847 GLEAN mRNA 273681 282893 0.998253 - . ID=CGI_10022270; scaffold1898 WUBlastX LTR_Pao 310641 310742 35 - . . scaffold1898 GLEAN mRNA 306186 312813 0.889712 + . ID=CGI_10012220; scaffold1898 WUBlastX LTR_Pao 310744 311604 663 - . . scaffold1898 GLEAN mRNA 306186 312813 0.889712 + . ID=CGI_10012220; scaffold152 WUBlastX LINE_CR1 74201 74530 230 + . . scaffold152 GLEAN mRNA 60138 75351 0.999676 - . ID=CGI_10014894; scaffold983 WUBlastX LINE_RTE-X 90704 91300 266 + . . scaffold983 GLEAN mRNA 90425 91342 0.906413 + . ID=CGI_10014027; scaffold1704 WUBlastX LINE_RTE-X 40733 40843 34 - . . scaffold1704 GLEAN mRNA 35457 41695 0.675217 - . ID=CGI_10010162; scaffold370 WUBlastX DNA_hAT-hATw 843596 844513 33 + . . scaffold370 GLEAN mRNA 838405 846799 0.855201 + . ID=CGI_10025566; scaffold274 WUBlastX LTR_Copia 135725 136540 417 + . . scaffold274 GLEAN mRNA 110645 138083 0.999675 + . ID=CGI_10017013; scaffold43008 WUBlastX LINE_RTE-X 4122 4487 68 + . . scaffold43008 GLEAN mRNA 2147 17942 0.982229 + . ID=CGI_10008457; scaffold150 WUBlastX DNA_IS4EU 204603 205397 406 + . . scaffold150 GLEAN mRNA 202869 211925 0.738569 - . ID=CGI_10028590; scaffold1080 WUBlastX DNA_En-Spm 262091 263065 138 - . . scaffold1080 GLEAN mRNA 255570 275608 0.591325 - . ID=CGI_10012678; scaffold1080 WUBlastX DNA_En-Spm 263131 264048 255 - . . scaffold1080 GLEAN mRNA 255570 275608 0.591325 - . ID=CGI_10012678; scaffold43842 WUBlastX LINE_RTE-X 193262 193540 99 + . . scaffold43842 GLEAN mRNA 186219 196229 0.99996 + . ID=CGI_10013104; scaffold43842 WUBlastX LINE_RTE-X 193494 194351 359 + . . scaffold43842 GLEAN mRNA 186219 196229 0.99996 + . ID=CGI_10013104; scaffold36936 WUBlastX DNA_Maverick 23613 24632 582 - . . scaffold36936 GLEAN mRNA 314 25498 0.932631 - . ID=CGI_10002182; scaffold230 WUBlastX DNA_hAT-Tip100 129691 129777 68 - . . scaffold230 GLEAN mRNA 126666 144461 0.534748 - . ID=CGI_10011251; scaffold230 WUBlastX DNA_hAT-Tip100 129903 130286 130 - . . scaffold230 GLEAN mRNA 126666 144461 0.534748 - . ID=CGI_10011251; scaffold230 WUBlastX DNA_hAT-Tip100 130771 131721 321 - . . scaffold230 GLEAN mRNA 126666 144461 0.534748 - . ID=CGI_10011251; scaffold257 WUBlastX LTR_Copia 1097994 1098239 61 - . . scaffold257 GLEAN mRNA 1093944 1099430 0.999918 - . ID=CGI_10027941; scaffold1084 WUBlastX LTR_Copia 37677 37772 25 + . . scaffold1084 GLEAN mRNA 31266 40802 0.801676 + . ID=CGI_10010075; scaffold1024 WUBlastX DNA_PiggyBac 1073333 1073542 80 - . . scaffold1024 GLEAN mRNA 1070619 1077233 0.9551 - . ID=CGI_10028563; scaffold44008 WUBlastX DNA_hAT-Tip100 353896 354282 46 + . . scaffold44008 GLEAN mRNA 353787 363820 0.499838 + . ID=CGI_10015300; scaffold363 WUBlastX DNA_hAT-Tip100 203163 203708 21 + . . scaffold363 GLEAN mRNA 199137 204611 0.999596 + . ID=CGI_10019296; scaffold1900 WUBlastX DNA_hAT 22276 22458 50 + . . scaffold1900 GLEAN mRNA 17727 24416 0.723538 + . ID=CGI_10017323; scaffold43 WUBlastX LINE_L2 539334 539567 21 - . . scaffold43 GLEAN mRNA 538185 539879 1 - . ID=CGI_10021358; scaffold976 WUBlastX LINE_L2 371100 371447 24 + . . scaffold976 GLEAN mRNA 356629 381531 0.51151 + . ID=CGI_10014020; scaffold890 WUBlastX LINE_CR1 290670 290954 39 - . . scaffold890 GLEAN mRNA 287435 312343 0.999997 - . ID=CGI_10014480; scaffold1024 WUBlastX LTR_Ngaro 1081145 1081339 42 - . . scaffold1024 GLEAN mRNA 1078261 1083838 0.826098 - . ID=CGI_10028565; scaffold479 WUBlastX LTR_DIRS 83385 83747 30 + . . scaffold479 GLEAN mRNA 82405 99723 0.898056 + . ID=CGI_10015682; scaffold1149 WUBlastX DNA_hAT-Ac 220073 220261 72 + . . scaffold1149 GLEAN mRNA 215463 220751 0.999395 - . ID=CGI_10023460; scaffold1584 WUBlastX RC_Helitron 342956 343354 60 - . . scaffold1584 GLEAN mRNA 342917 343357 0.69447 - . ID=CGI_10015089; scaffold180 WUBlastX RC_Helitron 36819 37214 71 - . . scaffold180 GLEAN mRNA 28202 49111 0.648909 - . ID=CGI_10004233; scaffold1741 WUBlastX RC_Helitron 587713 587763 22 + . . scaffold1741 GLEAN mRNA 575954 614216 0.201236 + . ID=CGI_10024047; scaffold184 WUBlastX DNA_IS4EU 254388 255116 27 + . . scaffold184 GLEAN mRNA 248871 256134 0.689082 + . ID=CGI_10014799; scaffold1362 WUBlastX DNA_Kolobok-IS4 572964 573455 41 - . . scaffold1362 GLEAN mRNA 572276 574419 0.938876 - . ID=CGI_10023946; scaffold1123 WUBlastX DNA_Kolobok-IS4 335354 335551 68 - . . scaffold1123 GLEAN mRNA 333329 335551 0.999996 - . ID=CGI_10018737; scaffold1244 WUBlastX DNA_Kolobok-IS4 605091 605582 41 + . . scaffold1244 GLEAN mRNA 508938 634898 0.0392589 - . ID=CGI_10020838; scaffold1004 WUBlastX DNA_IS4EU 10461 11345 32 + . . scaffold1004 GLEAN mRNA 10032 23372 0.57306 + . ID=CGI_10020759; scaffold1004 WUBlastX DNA_IS4EU 10461 11345 32 + . . scaffold1004 GLEAN mRNA 10170 36067 1 - . ID=CGI_10020760; scaffold94 WUBlastX LTR_ERVK 64312 64422 42 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold43028 WUBlastX LINE_I 69706 70002 38 + . . scaffold43028 GLEAN mRNA 67355 71730 1 + . ID=CGI_10008504; scaffold42656 WUBlastX DNA_Harbinger 167056 167313 56 + . . scaffold42656 GLEAN mRNA 148895 177088 0.417801 - . ID=CGI_10007419; scaffold591 WUBlastX DNA_Harbinger 586684 586839 30 + . . scaffold591 GLEAN mRNA 577441 607957 0.997895 + . ID=CGI_10027576; scaffold1698 WUBlastX LTR_Gypsy 81047 81451 53 - . . scaffold1698 GLEAN mRNA 81014 81520 0.994893 - . ID=CGI_10019366; scaffold1221 WUBlastX LTR_Gypsy 7928 8222 28 - . . scaffold1221 GLEAN mRNA 6329 8222 0.996819 - . ID=CGI_10019721; scaffold35444 WUBlastX LTR_Gypsy 6125 6250 40 - . . scaffold35444 GLEAN mRNA 591 6430 0.999654 - . ID=CGI_10001555; scaffold1350 WUBlastX LTR_Gypsy 34597 34636 44 + . . scaffold1350 GLEAN mRNA 34597 41993 0.49982 - . ID=CGI_10017291; scaffold140 WUBlastX LINE_L2 345380 345592 54 - . . scaffold140 GLEAN mRNA 327930 353126 0.379108 + . ID=CGI_10020135; scaffold140 WUBlastX LINE_L2 345380 345592 54 - . . scaffold140 GLEAN mRNA 344940 369951 0.671174 - . ID=CGI_10020136; scaffold378 WUBlastX LINE_L1-Tx1 255175 255420 42 - . . scaffold378 GLEAN mRNA 247048 256613 0.78919 - . ID=CGI_10017643; scaffold34732 WUBlastX LINE_L1 16245 16373 54 + . . scaffold34732 GLEAN mRNA 11726 18752 1 - . ID=CGI_10001335; scaffold1490 WUBlastX LINE_L1 392935 393474 30 + . . scaffold1490 GLEAN mRNA 376771 397004 0.920012 + . ID=CGI_10014923; scaffold365 WUBlastX DNA_Kolobok-Hyd 580621 581292 36 - . . scaffold365 GLEAN mRNA 578843 581397 0.999968 - . ID=CGI_10022744; scaffold365 WUBlastX DNA_Kolobok-Hyd 580621 581292 36 - . . scaffold365 GLEAN mRNA 570241 589384 0.479657 + . ID=CGI_10022743; scaffold1599 WUBlastX LINE_L1 546942 547148 30 + . . scaffold1599 GLEAN mRNA 541949 554448 0.648153 + . ID=CGI_10027151; scaffold678 WUBlastX LINE_L1-Tx1 720730 721038 20 - . . scaffold678 GLEAN mRNA 717644 727846 0.937362 - . ID=CGI_10026375; scaffold1806 WUBlastX LINE_Penelope 88937 89122 21 + . . scaffold1806 GLEAN mRNA 70668 89122 0.54485 - . ID=CGI_10006158; scaffold1464 WUBlastX LINE_Penelope 6982 7284 31 - . . scaffold1464 GLEAN mRNA 1479 25035 0.549445 + . ID=CGI_10003234; scaffold40396 WUBlastX LINE_Penelope 2146 2340 29 - . . scaffold40396 GLEAN mRNA 2119 27704 0.990545 - . ID=CGI_10004066; scaffold1322 WUBlastX DNA_P 477702 477905 48 - . . scaffold1322 GLEAN mRNA 469090 478831 0.810694 - . ID=CGI_10019482; scaffold1322 WUBlastX DNA_P 478325 478363 21 - . . scaffold1322 GLEAN mRNA 469090 478831 0.810694 - . ID=CGI_10019482; scaffold276 WUBlastX DNA_P 29685 29957 45 - . . scaffold276 GLEAN mRNA 27405 34935 0.425332 - . ID=CGI_10006435; scaffold1138 WUBlastX DNA_P 191003 191308 44 + . . scaffold1138 GLEAN mRNA 183755 192154 0.999676 - . ID=CGI_10015373; scaffold1138 WUBlastX DNA_P 191003 191308 44 + . . scaffold1138 GLEAN mRNA 186841 191383 0.716431 + . ID=CGI_10015374; scaffold39268 WUBlastX DNA_MuDR 63731 63985 64 + . . scaffold39268 GLEAN mRNA 61831 68309 0.898511 + . ID=CGI_10003276; scaffold1154 WUBlastX DNA_MuDR 400669 400827 20 - . . scaffold1154 GLEAN mRNA 400669 406858 0.774692 - . ID=CGI_10026168; scaffold43954 WUBlastX DNA_MuDR 334847 335170 49 + . . scaffold43954 GLEAN mRNA 334847 335729 0.999507 + . ID=CGI_10014586; scaffold1792 WUBlastX LINE_Penelope 69486 69620 35 + . . scaffold1792 GLEAN mRNA 55871 124119 0.789251 - . ID=CGI_10012744; scaffold292 WUBlastX LINE_R1 8050 8169 25 + . . scaffold292 GLEAN mRNA 5287 26747 0.497399 + . ID=CGI_10003526; scaffold1174 WUBlastX LINE_LOA 141051 141251 27 - . . scaffold1174 GLEAN mRNA 122742 144408 0.527772 + . ID=CGI_10026027; scaffold1707 WUBlastX DNA_TcMar-Tc1 1840 1986 72 - . . scaffold1707 GLEAN mRNA 1527 2835 0.999999 - . ID=CGI_10009945; scaffold145 WUBlastX LINE_RTE-BovB 1139599 1139739 66 - . . scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold44 WUBlastX LINE_RTE-X 388386 388574 68 + . . scaffold44 GLEAN mRNA 377498 394536 0.863441 - . ID=CGI_10016839; scaffold388 WUBlastX LINE_RTE-X 220613 220750 53 - . . scaffold388 GLEAN mRNA 216874 221663 0.662264 - . ID=CGI_10020466; scaffold388 WUBlastX LINE_RTE-X 220613 220750 53 - . . scaffold388 GLEAN mRNA 211826 226750 0.996237 + . ID=CGI_10020465; scaffold1812 WUBlastX LINE_RTE-X 37488 37598 62 - . . scaffold1812 GLEAN mRNA 18505 39381 0.997673 - . ID=CGI_10004688; scaffold365 WUBlastX LINE_RTE-X 170013 170150 31 - . . scaffold365 GLEAN mRNA 162342 187868 0.996603 - . ID=CGI_10022722; scaffold1855 WUBlastX LINE_RTE-X 205603 205668 21 - . . scaffold1855 GLEAN mRNA 188156 207855 0.999324 - . ID=CGI_10008876; scaffold247 WUBlastX LINE_RTE-BovB 203560 203631 32 - . . scaffold247 GLEAN mRNA 197989 208519 0.419557 + . ID=CGI_10018593; scaffold585 WUBlastX LINE_RTE-BovB 106833 107093 77 + . . scaffold585 GLEAN mRNA 91313 107443 0.999351 - . ID=CGI_10005541; scaffold1747 WUBlastX DNA_PiggyBac 42719 42883 36 + . . scaffold1747 GLEAN mRNA 42461 42907 1 + . ID=CGI_10004400; scaffold343 WUBlastX DNA_Maverick 643952 643999 45 - . . scaffold343 GLEAN mRNA 643952 644134 0.514976 + . ID=CGI_10021772; scaffold343 WUBlastX DNA_Maverick 643828 643999 45 - . . scaffold343 GLEAN mRNA 643828 662585 1 - . ID=CGI_10021771; scaffold1895 WUBlastX DNA_PiggyBac 34430 34687 37 - . . scaffold1895 GLEAN mRNA 10144 35398 0.383689 - . ID=CGI_10010969; scaffold1865 WUBlastX LINE_Proto2 291884 292267 32 + . . scaffold1865 GLEAN mRNA 265949 318343 0.640148 - . ID=CGI_10013547; scaffold784 WUBlastX LINE_Proto2 304153 304299 26 + . . scaffold784 GLEAN mRNA 298825 308897 0.999951 - . ID=CGI_10024422; scaffold1132 WUBlastX LTR_Gypsy 719472 719555 20 - . . scaffold1132 GLEAN mRNA 715893 721077 0.813716 - . ID=CGI_10023330; scaffold1009 WUBlastX LINE_RTE-BovB 803038 803106 24 - . . scaffold1009 GLEAN mRNA 796284 807727 0.387799 - . ID=CGI_10028763; scaffold1009 WUBlastX LINE_RTE-BovB 803038 803106 24 - . . scaffold1009 GLEAN mRNA 802465 805561 0.994697 + . ID=CGI_10028764; scaffold1583 WUBlastX LINE_RTE-X 970049 970102 33 + . . scaffold1583 GLEAN mRNA 953169 980453 0.999949 + . ID=CGI_10025857; scaffold42198 WUBlastX LINE_RTE-BovB 65263 65490 27 + . . scaffold42198 GLEAN mRNA 65263 65511 0.481188 + . ID=CGI_10006393; scaffold41356 WUBlastX LINE_RTE-X 52369 52623 41 - . . scaffold41356 GLEAN mRNA 23583 56717 0.908715 - . ID=CGI_10004994; scaffold41356 WUBlastX LINE_RTE-X 52369 52623 41 - . . scaffold41356 GLEAN mRNA 49810 66673 0.811456 + . ID=CGI_10004995; scaffold1322 WUBlastX LINE_RTE-X 195180 195335 48 - . . scaffold1322 GLEAN mRNA 192179 204571 0.871492 + . ID=CGI_10019467; scaffold483 WUBlastX LINE_RTE-X 160777 160947 41 - . . scaffold483 GLEAN mRNA 152695 165153 0.98402 - . ID=CGI_10007752; scaffold41174 WUBlastX LINE_DRE 68925 69392 34 + . . scaffold41174 GLEAN mRNA 37943 88980 0.479824 - . ID=CGI_10004794; scaffold53 WUBlastX LINE_L1-Tx1 547805 547993 28 - . . scaffold53 GLEAN mRNA 545001 589869 0.567528 + . ID=CGI_10026671; scaffold42866 WUBlastX LTR_Pao 5031 5417 64 - . . scaffold42866 GLEAN mRNA 4204 26490 0.99967 + . ID=CGI_10007989; scaffold488 WUBlastX LTR_Copia 87887 88090 34 - . . scaffold488 GLEAN mRNA 87554 88225 1 - . ID=CGI_10005409; scaffold35444 WUBlastX LTR_Gypsy 5725 5934 41 - . . scaffold35444 GLEAN mRNA 591 6430 0.999654 - . ID=CGI_10001555; C34622 WUBlastX DNA_Kolobok-IS4 5100 5273 57 + . . C34622 GLEAN mRNA 5100 5956 0.557561 + . ID=CGI_10001328; scaffold43660 WUBlastX DNA_TcMar-Fot1 271367 271429 23 + . . scaffold43660 GLEAN mRNA 262639 273396 0.998201 - . ID=CGI_10011673; scaffold517 WUBlastX LINE_Penelope 209768 209971 81 - . . scaffold517 GLEAN mRNA 207961 216861 0.317127 - . ID=CGI_10008985; scaffold363 WUBlastX LINE_Penelope 573481 573741 71 - . . scaffold363 GLEAN mRNA 572459 589785 0.839415 + . ID=CGI_10019315; scaffold1785 WUBlastX LINE_L1 20416 21093 45 + . . scaffold1785 GLEAN mRNA 6322 29997 0.294917 - . ID=CGI_10024349; scaffold102 WUBlastX LTR_Gypsy 933279 933713 94 - . . scaffold102 GLEAN mRNA 930119 940235 0.678096 - . ID=CGI_10028458; scaffold29534 WUBlastX LINE_L1 1208 1834 30 + . . scaffold29534 GLEAN mRNA 32 6456 1 - . ID=CGI_10000544; scaffold40246 WUBlastX DNA_hAT-Tip100 26019 26282 93 - . . scaffold40246 GLEAN mRNA 25998 27045 0.997233 - . ID=CGI_10003986; scaffold145 WUBlastX DNA_Crypton 642933 643199 88 - . . scaffold145 GLEAN mRNA 640130 678599 0.569648 - . ID=CGI_10026560; scaffold802 WUBlastX DNA_Sola 5827 6312 35 - . . scaffold802 GLEAN mRNA 5743 8732 0.999998 - . ID=CGI_10015724; scaffold802 WUBlastX DNA_Sola 6484 6651 66 - . . scaffold802 GLEAN mRNA 5743 8732 0.999998 - . ID=CGI_10015724; scaffold586 WUBlastX LINE_RTE-X 177954 178151 87 - . . scaffold586 GLEAN mRNA 158543 182219 0.249413 - . ID=CGI_10018000; scaffold58 WUBlastX LINE_L1-Tx1 738782 738991 22 + . . scaffold58 GLEAN mRNA 729182 751705 0.472398 + . ID=CGI_10023162; scaffold40080 WUBlastX LINE_RTE-BovB 24259 24366 44 + . . scaffold40080 GLEAN mRNA 23516 25927 0.997813 - . ID=CGI_10003844; scaffold41598 WUBlastX DNA_hAT-Tip100 73493 73783 148 - . . scaffold41598 GLEAN mRNA 59426 74794 0.449575 - . ID=CGI_10005304; scaffold1142 WUBlastX LINE_L1 27897 28544 108 + . . scaffold1142 GLEAN mRNA 17099 55959 0.998343 + . ID=CGI_10008525; scaffold1854 WUBlastX LTR_Ngaro 21132 21665 127 - . . scaffold1854 GLEAN mRNA 10780 21821 0.727692 - . ID=CGI_10004409; scaffold453 WUBlastX DNA_Kolobok 302798 302929 79 - . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold453 WUBlastX DNA_Kolobok 303045 303176 78 - . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold794 WUBlastX DNA_TcMar-Fot1 271227 271646 166 - . . scaffold794 GLEAN mRNA 271227 282643 0.491343 - . ID=CGI_10017153; scaffold695 WUBlastX LINE_L1-Tx1 88607 88648 27 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold43616 WUBlastX LINE_L2 198131 199444 60 - . . scaffold43616 GLEAN mRNA 187064 211275 0.700682 + . ID=CGI_10011425; scaffold1866 WUBlastX LINE_CR1 223930 224184 64 + . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold980 WUBlastX LINE_RTE-X 165166 165585 124 + . . scaffold980 GLEAN mRNA 163810 172327 0.499535 - . ID=CGI_10019213; scaffold1255 WUBlastX LTR_Gypsy 394310 396277 1302 + . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold1532 WUBlastX LTR_Gypsy 988711 988866 57 + . . scaffold1532 GLEAN mRNA 980578 997386 0.999875 - . ID=CGI_10028278; scaffold1132 WUBlastX LINE_CR1 333766 333813 20 + . . scaffold1132 GLEAN mRNA 323455 353252 0.805086 - . ID=CGI_10023315; scaffold524 WUBlastX LINE_CR1-L2 453245 453556 148 - . . scaffold524 GLEAN mRNA 445295 466161 1 + . ID=CGI_10016612; scaffold1352 WUBlastX LINE_RTE-X 402384 402626 23 + . . scaffold1352 GLEAN mRNA 400458 408667 0.333165 + . ID=CGI_10018425; scaffold852 WUBlastX DNA_Kolobok-IS4 50373 51098 314 + . . scaffold852 GLEAN mRNA 42591 51134 1 + . ID=CGI_10012033; scaffold852 WUBlastX DNA_Kolobok-IS4 50373 51098 314 + . . scaffold852 GLEAN mRNA 46446 54395 0.990384 - . ID=CGI_10012034; scaffold870 WUBlastX DNA_hAT 49590 49703 79 + . . scaffold870 GLEAN mRNA 44819 52818 0.999949 + . ID=CGI_10007493; scaffold925 WUBlastX LTR_DIRS 440751 441569 216 + . . scaffold925 GLEAN mRNA 430454 444048 0.986598 + . ID=CGI_10017428; scaffold1307 WUBlastX DNA_Kolobok-IS4 9310 10338 250 + . . scaffold1307 GLEAN mRNA 6251 45653 0.745308 + . ID=CGI_10023739; scaffold209 WUBlastX DNA_hAT-Tip100 258410 258613 40 - . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX DNA_hAT-Tip100 258595 258627 21 - . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold1213 WUBlastX LINE_L1-Tx1 420212 420832 211 + . . scaffold1213 GLEAN mRNA 408300 423198 0.400191 - . ID=CGI_10027450; scaffold90 WUBlastX DNA_hAT-Tip100 398040 398618 42 - . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold90 WUBlastX DNA_hAT-Tip100 398724 398954 128 - . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold90 WUBlastX DNA_hAT-Tip100 399186 399707 258 - . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold90 WUBlastX DNA_hAT-Tip100 399715 400035 56 - . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold243 WUBlastX LTR_Gypsy-Cigr 117632 119119 380 - . . scaffold243 GLEAN mRNA 107331 122281 0.913043 + . ID=CGI_10006817; scaffold37900 WUBlastX DNA_IS4EU 29087 29287 20 + . . scaffold37900 GLEAN mRNA 13260 48286 0.694403 - . ID=CGI_10002507; scaffold632 WUBlastX LINE_CR1-L2 511810 511959 27 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold400 WUBlastX LINE_CR1-L2 265025 265621 461 - . . scaffold400 GLEAN mRNA 262709 267661 0.544852 - . ID=CGI_10011440; scaffold1898 WUBlastX LTR_Pao 310587 310769 21 - . . scaffold1898 GLEAN mRNA 306186 312813 0.889712 + . ID=CGI_10012220; scaffold458 WUBlastX LTR_Copia 109754 110149 26 + . . scaffold458 GLEAN mRNA 105247 110866 0.999785 + . ID=CGI_10013589; scaffold1875 WUBlastX LINE_CR1-L2 144025 144172 57 + . . scaffold1875 GLEAN mRNA 111643 144172 0.998262 + . ID=CGI_10006630; scaffold632 WUBlastX LINE_CR1 482773 482964 63 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold43954 WUBlastX LINE_CR1 146642 146842 40 + . . scaffold43954 GLEAN mRNA 139153 149832 0.999998 - . ID=CGI_10014576; C35952 WUBlastX LINE_L2 2310 2672 52 + . . C35952 GLEAN mRNA 195 8083 0.544487 + . ID=CGI_10001669; scaffold1608 WUBlastX LTR_Gypsy 134350 134457 20 + . . scaffold1608 GLEAN mRNA 108771 134587 0.737683 + . ID=CGI_10010678; scaffold1132 WUBlastX LTR_Gypsy 718758 719291 28 - . . scaffold1132 GLEAN mRNA 715893 721077 0.813716 - . ID=CGI_10023330; scaffold1307 WUBlastX LTR_Gypsy 592107 592385 67 + . . scaffold1307 GLEAN mRNA 586550 596673 0.992394 + . ID=CGI_10023769; scaffold40412 WUBlastX DNA_Harbinger 7174 7386 69 + . . scaffold40412 GLEAN mRNA 4188 16676 0.991013 - . ID=CGI_10004112; scaffold43920 WUBlastX DNA_TcMar-Tc1 260886 261035 56 + . . scaffold43920 GLEAN mRNA 253407 262803 0.999991 + . ID=CGI_10013995; scaffold1322 WUBlastX LINE_RTE-X 267513 267695 30 - . . scaffold1322 GLEAN mRNA 265135 302274 0.499623 + . ID=CGI_10019472; scaffold70 WUBlastX LINE_RTE-X 610017 610199 24 + . . scaffold70 GLEAN mRNA 605933 624830 0.814164 - . ID=CGI_10024778; scaffold42904 WUBlastX LINE_RTE-X 103388 103537 35 + . . scaffold42904 GLEAN mRNA 87880 118208 0.944676 - . ID=CGI_10008103; scaffold41560 WUBlastX LINE_RTE-X 110121 110315 21 + . . scaffold41560 GLEAN mRNA 106439 114729 1 + . ID=CGI_10005285; scaffold1245 WUBlastX LINE_CR1-L2 18826 18927 34 + . . scaffold1245 GLEAN mRNA 8846 27165 0.999947 - . ID=CGI_10009218; scaffold967 WUBlastX LTR_Copia 129906 130013 32 - . . scaffold967 GLEAN mRNA 127443 132839 0.997345 + . ID=CGI_10015454; scaffold1000 WUBlastX DNA_hAT-Ac 256832 257185 44 + . . scaffold1000 GLEAN mRNA 254688 266328 0.650465 + . ID=CGI_10013084; C35952 WUBlastX LINE_L2 2481 2780 45 + . . C35952 GLEAN mRNA 195 8083 0.544487 + . ID=CGI_10001669; scaffold44008 WUBlastX LINE_L2 180765 180956 27 - . . scaffold44008 GLEAN mRNA 176056 181412 0.761228 - . ID=CGI_10015290; scaffold43660 WUBlastX DNA_Harbinger 93442 93706 30 + . . scaffold43660 GLEAN mRNA 93442 94483 0.96423 + . ID=CGI_10011662; scaffold43660 WUBlastX DNA_Harbinger 93326 93706 30 + . . scaffold43660 GLEAN mRNA 73296 94423 0.650662 - . ID=CGI_10011661; scaffold42144 WUBlastX DNA_TcMar-Marin 108183 108281 20 + . . scaffold42144 GLEAN mRNA 104437 125325 0.993907 - . ID=CGI_10006248; scaffold149 WUBlastX DNA_Harbinger 633715 633858 58 + . . scaffold149 GLEAN mRNA 633695 633907 0.618058 + . ID=CGI_10025313; scaffold1262 WUBlastX LTR_Gypsy 538928 539110 50 + . . scaffold1262 GLEAN mRNA 536759 542214 1 + . ID=CGI_10018959; scaffold911 WUBlastX LTR_Gypsy 98128 98241 28 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold513 WUBlastX LINE_L1 356307 356600 20 + . . scaffold513 GLEAN mRNA 355722 357536 0.999999 + . ID=CGI_10022151; scaffold655 WUBlastX DNA_Kolobok-Hyd 203222 203638 36 + . . scaffold655 GLEAN mRNA 202486 204862 0.819461 + . ID=CGI_10014950; scaffold955 WUBlastX DNA_Kolobok-Hyd 193665 194081 36 + . . scaffold955 GLEAN mRNA 186096 195305 0.45779 + . ID=CGI_10009857; scaffold1546 WUBlastX DNA_P 186408 186623 65 - . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold39972 WUBlastX LINE_RTE-X 39460 39948 38 + . . scaffold39972 GLEAN mRNA 35765 49275 0.995966 + . ID=CGI_10003708; scaffold37880 WUBlastX LTR_Copia 36707 37048 41 + . . scaffold37880 GLEAN mRNA 36587 37120 0.99998 + . ID=CGI_10002539; scaffold37880 WUBlastX LTR_Copia 36707 37048 41 + . . scaffold37880 GLEAN mRNA 32540 47810 0.54365 - . ID=CGI_10002538; scaffold1009 WUBlastX LINE_RTE-RTE 1403774 1403941 49 - . . scaffold1009 GLEAN mRNA 1385958 1409839 0.363333 + . ID=CGI_10028796; scaffold1554 WUBlastX LINE_L2 84557 84665 22 - . . scaffold1554 GLEAN mRNA 84456 84665 0.999372 - . ID=CGI_10017358; scaffold309 WUBlastX LINE_L2 178525 178770 45 - . . scaffold309 GLEAN mRNA 178045 179781 0.835602 - . ID=CGI_10007938; scaffold396 WUBlastX LINE_CR1 204347 204706 58 + . . scaffold396 GLEAN mRNA 196799 208805 0.948886 - . ID=CGI_10018103; scaffold828 WUBlastX LINE_L2 53762 54010 43 + . . scaffold828 GLEAN mRNA 15085 78014 0.596994 - . ID=CGI_10007364; scaffold950 WUBlastX LTR_DIRS 120966 121109 77 - . . scaffold950 GLEAN mRNA 120921 143232 0.996917 + . ID=CGI_10022921; scaffold445 WUBlastX LTR_Gypsy-Cigr 321093 321467 39 - . . scaffold445 GLEAN mRNA 299978 341164 0.811094 - . ID=CGI_10019444; scaffold102 WUBlastX LTR_Gypsy 1095942 1096169 66 + . . scaffold102 GLEAN mRNA 1095942 1101722 0.998596 + . ID=CGI_10028470; scaffold67 WUBlastX LTR_Gypsy 398106 398288 23 - . . scaffold67 GLEAN mRNA 389741 401939 0.990037 + . ID=CGI_10018273; scaffold42086 WUBlastX LINE_RTE-BovB 132031 132068 79 + . . scaffold42086 GLEAN mRNA 132031 141843 0.997945 - . ID=CGI_10006074; scaffold38510 WUBlastX DNA_TcMar-Tc1 20678 20854 22 - . . scaffold38510 GLEAN mRNA 7470 20879 0.242516 - . ID=CGI_10002810; scaffold38510 WUBlastX DNA_TcMar-Tc1 20678 20854 22 - . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold13 WUBlastX LINE_Penelope 126592 126987 33 + . . scaffold13 GLEAN mRNA 121736 127612 0.999992 + . ID=CGI_10013204; scaffold43522 WUBlastX LINE_L1 102908 102997 22 - . . scaffold43522 GLEAN mRNA 83396 104526 0.999468 + . ID=CGI_10010551; scaffold1132 WUBlastX LINE_R2 424299 424394 25 + . . scaffold1132 GLEAN mRNA 413110 426704 0.743295 - . ID=CGI_10023318; scaffold365 WUBlastX DNA_Kolobok-Hyd 581478 581558 22 - . . scaffold365 GLEAN mRNA 570241 589384 0.479657 + . ID=CGI_10022743; scaffold38494 WUBlastX LINE_L2 54802 55128 61 + . . scaffold38494 GLEAN mRNA 8485 55173 0.992441 + . ID=CGI_10002806; scaffold38458 WUBlastX LINE_CR1-L2 56051 56269 22 + . . scaffold38458 GLEAN mRNA 56051 56269 0.999372 + . ID=CGI_10002785; scaffold1697 WUBlastX LTR_ERV1 12913 13116 53 + . . scaffold1697 GLEAN mRNA 140 13575 0.983491 + . ID=CGI_10007876; scaffold1873 WUBlastX LINE_L2 54381 54941 26 - . . scaffold1873 GLEAN mRNA 42995 66497 0.656652 + . ID=CGI_10009291; scaffold681 WUBlastX LINE_L2 35261 35650 43 + . . scaffold681 GLEAN mRNA 27385 42751 0.999855 + . ID=CGI_10014717; scaffold1888 WUBlastX DNA_hAT-hATw 147313 147651 27 + . . scaffold1888 GLEAN mRNA 114572 148611 0.858074 + . ID=CGI_10013297; scaffold33980 WUBlastX RC_Helitron 7101 7244 44 + . . scaffold33980 GLEAN mRNA 2151 15835 0.664854 + . ID=CGI_10001168; scaffold591 WUBlastX LTR_Gypsy 224316 224468 38 - . . scaffold591 GLEAN mRNA 224175 224468 0.561606 - . ID=CGI_10027559; scaffold115 WUBlastX DNA_TcMar-Marin 624640 624714 28 + . . scaffold115 GLEAN mRNA 617761 631483 0.999676 + . ID=CGI_10021409; scaffold917 WUBlastX LINE_RTE-X 175485 175619 34 - . . scaffold917 GLEAN mRNA 150992 179733 0.207364 - . ID=CGI_10011084; scaffold917 WUBlastX LINE_RTE-X 175652 175738 50 - . . scaffold917 GLEAN mRNA 150992 179733 0.207364 - . ID=CGI_10011084; scaffold866 WUBlastX DNA_TcMar-Tc2 47452 47958 54 + . . scaffold866 GLEAN mRNA 47434 48000 0.6496 + . ID=CGI_10004742; scaffold541 WUBlastX LTR_Gypsy 62796 62882 21 + . . scaffold541 GLEAN mRNA 50245 65351 0.650911 - . ID=CGI_10022375; scaffold1832 WUBlastX DNA_En-Spm 198577 198837 53 - . . scaffold1832 GLEAN mRNA 198351 200947 0.999463 - . ID=CGI_10018468; scaffold509 WUBlastX LTR_Ngaro 93631 93744 44 + . . scaffold509 GLEAN mRNA 91758 98346 0.858612 - . ID=CGI_10018642; scaffold1188 WUBlastX LTR_Gypsy 176592 176924 51 - . . scaffold1188 GLEAN mRNA 159311 176924 0.555609 - . ID=CGI_10025460; scaffold204 WUBlastX DNA_TcMar-Marin 43600 43782 54 + . . scaffold204 GLEAN mRNA 37773 52969 0.996606 - . ID=CGI_10026088; scaffold43818 WUBlastX DNA_TcMar-Marin 202157 202408 22 + . . scaffold43818 GLEAN mRNA 188862 206391 0.999997 + . ID=CGI_10012766; scaffold577 WUBlastX DNA_hAT-Blackja 150467 150688 29 + . . scaffold577 GLEAN mRNA 118575 184181 0.72743 - . ID=CGI_10009918; scaffold406 WUBlastX DNA_hAT-Blackja 577524 577583 29 - . . scaffold406 GLEAN mRNA 577509 577850 0.55465 - . ID=CGI_10023859; scaffold716 WUBlastX DNA_Kolobok-IS4 63823 64248 56 - . . scaffold716 GLEAN mRNA 62841 64344 0.546164 - . ID=CGI_10014441; scaffold204 WUBlastX LINE_Penelope 842437 842769 47 + . . scaffold204 GLEAN mRNA 840254 857007 0.756652 + . ID=CGI_10026136; scaffold591 WUBlastX DNA_MuDR 374845 375012 42 - . . scaffold591 GLEAN mRNA 374812 375012 0.988733 - . ID=CGI_10027565; scaffold1812 WUBlastX LINE_L2 32068 32415 22 + . . scaffold1812 GLEAN mRNA 18505 39381 0.997673 - . ID=CGI_10004688; scaffold591 WUBlastX LINE_RTE-X 1406702 1406845 32 + . . scaffold591 GLEAN mRNA 1401037 1412080 0.968913 + . ID=CGI_10027626; scaffold1583 WUBlastX LINE_Proto2 324408 324704 42 - . . scaffold1583 GLEAN mRNA 302473 325169 0.82008 - . ID=CGI_10025823; scaffold479 WUBlastX LINE_RTE-X 308595 308759 47 + . . scaffold479 GLEAN mRNA 298196 323122 0.478892 - . ID=CGI_10015700; scaffold338 WUBlastX LINE_RTE-X 226313 226465 56 - . . scaffold338 GLEAN mRNA 225763 251936 1 + . ID=CGI_10011188; scaffold925 WUBlastX LINE_RTE-X 380209 380379 61 + . . scaffold925 GLEAN mRNA 368361 388516 0.521242 + . ID=CGI_10017426; scaffold34202 WUBlastX LINE_RTE-X 9785 9916 55 + . . scaffold34202 GLEAN mRNA 527 10844 1 - . ID=CGI_10001227; scaffold604 WUBlastX LINE_RTE-X 45198 45377 46 - . . scaffold604 GLEAN mRNA 42759 53290 0.454666 + . ID=CGI_10005591; scaffold964 WUBlastX LINE_L1-Tx1 37395 37574 33 + . . scaffold964 GLEAN mRNA 34148 39936 0.41936 + . ID=CGI_10009727; scaffold191 WUBlastX LINE_CR1 553026 553154 62 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold1808 WUBlastX LINE_CR1-L2 114813 115403 24 + . . scaffold1808 GLEAN mRNA 110431 132703 0.574175 + . ID=CGI_10008030; scaffold983 WUBlastX LINE_CR1 90590 91249 42 + . . scaffold983 GLEAN mRNA 90425 91342 0.906413 + . ID=CGI_10014027; scaffold451 WUBlastX LINE_L1 87681 87845 62 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold1817 WUBlastX LTR_Gypsy-Cigr 23955 24503 47 + . . scaffold1817 GLEAN mRNA 9897 44966 0.453567 - . ID=CGI_10005250; scaffold264 WUBlastX LTR_ERV1 63606 64226 74 + . . scaffold264 GLEAN mRNA 55806 65386 0.919425 + . ID=CGI_10003463; scaffold572 WUBlastX LTR_Gypsy 15519 16118 56 - . . scaffold572 GLEAN mRNA 5730 19170 0.671543 + . ID=CGI_10001775; scaffold885 WUBlastX LTR_DIRS 1018461 1018748 54 + . . scaffold885 GLEAN mRNA 1005329 1048267 0.991835 - . ID=CGI_10025234; scaffold664 WUBlastX LTR_Ngaro 543660 543670 76 - . . scaffold664 GLEAN mRNA 543660 543839 0.999372 - . ID=CGI_10021455; scaffold42584 WUBlastX LINE_L2 100573 100803 65 + . . scaffold42584 GLEAN mRNA 87388 105090 0.998677 + . ID=CGI_10007309; scaffold43084 WUBlastX DNA_hAT-Tip100 142652 142945 61 + . . scaffold43084 GLEAN mRNA 127440 144570 0.298679 + . ID=CGI_10008568; scaffold1671 WUBlastX RC_Helitron 226429 226560 28 + . . scaffold1671 GLEAN mRNA 221124 227498 0.633477 + . ID=CGI_10015147; scaffold347 WUBlastX LINE_I 261533 261850 56 - . . scaffold347 GLEAN mRNA 231355 265361 0.350161 - . ID=CGI_10021787; scaffold43242 WUBlastX LTR_ERV1 20616 20667 43 - . . scaffold43242 GLEAN mRNA 20616 21020 0.593326 - . ID=CGI_10009542; scaffold40638 WUBlastX LTR_ERVK 66215 66394 31 - . . scaffold40638 GLEAN mRNA 61308 67362 0.755375 - . ID=CGI_10004287; scaffold38130 WUBlastX LTR_Gypsy 32307 32507 26 - . . scaffold38130 GLEAN mRNA 32205 35051 0.988307 - . ID=CGI_10002637; scaffold1726 WUBlastX LTR_Gypsy 292452 292994 52 - . . scaffold1726 GLEAN mRNA 280850 293294 0.426779 - . ID=CGI_10015637; scaffold58 WUBlastX LINE_L1-Tx1 738412 738615 31 + . . scaffold58 GLEAN mRNA 729182 751705 0.472398 + . ID=CGI_10023162; scaffold1518 WUBlastX LINE_L1 422444 422941 53 - . . scaffold1518 GLEAN mRNA 421619 427340 0.991637 - . ID=CGI_10017813; scaffold1745 WUBlastX LINE_L1 8502 8861 43 + . . scaffold1745 GLEAN mRNA 8109 9842 0.777131 + . ID=CGI_10005402; scaffold40164 WUBlastX LINE_L1-Tx1 7760 8008 59 + . . scaffold40164 GLEAN mRNA 2839 12364 0.429437 - . ID=CGI_10003898; scaffold208 WUBlastX DNA_TcMar-Marin 116088 116267 28 + . . scaffold208 GLEAN mRNA 115161 117315 1 - . ID=CGI_10010026; scaffold1214 WUBlastX LINE_CR1 247105 247500 60 - . . scaffold1214 GLEAN mRNA 241265 253884 0.274712 + . ID=CGI_10015480; scaffold705 WUBlastX LINE_Penelope 344892 344984 27 - . . scaffold705 GLEAN mRNA 340127 351838 0.495675 + . ID=CGI_10015517; scaffold976 WUBlastX LINE_Penelope 327879 327980 32 + . . scaffold976 GLEAN mRNA 303574 336885 0.551212 + . ID=CGI_10014017; scaffold976 WUBlastX LINE_Penelope 328018 328239 46 + . . scaffold976 GLEAN mRNA 303574 336885 0.551212 + . ID=CGI_10014017; scaffold1731 WUBlastX LINE_RTE-BovB 23003 23110 61 + . . scaffold1731 GLEAN mRNA 22393 24983 1 - . ID=CGI_10001591; scaffold393 WUBlastX LINE_RTE-X 721753 722076 27 - . . scaffold393 GLEAN mRNA 700989 727086 0.68143 + . ID=CGI_10026911; scaffold388 WUBlastX LINE_RTE-X 220619 220732 55 - . . scaffold388 GLEAN mRNA 216874 221663 0.662264 - . ID=CGI_10020466; scaffold388 WUBlastX LINE_RTE-X 220619 220732 55 - . . scaffold388 GLEAN mRNA 211826 226750 0.996237 + . ID=CGI_10020465; scaffold37740 WUBlastX LINE_RTE-X 27089 27376 36 + . . scaffold37740 GLEAN mRNA 12349 40683 0.409241 - . ID=CGI_10002469; scaffold1454 WUBlastX LTR_ERV1 66278 66556 23 - . . scaffold1454 GLEAN mRNA 63589 73088 0.838276 - . ID=CGI_10004314; scaffold1132 WUBlastX LINE_R2 105785 106069 30 - . . scaffold1132 GLEAN mRNA 105539 106657 0.995556 - . ID=CGI_10023312; scaffold43028 WUBlastX LINE_RTE-BovB 17106 17261 37 - . . scaffold43028 GLEAN mRNA 13952 19166 0.998274 + . ID=CGI_10008502; scaffold210 WUBlastX LINE_RTE-BovB 421790 421918 56 + . . scaffold210 GLEAN mRNA 410849 421921 0.526266 + . ID=CGI_10015905; scaffold955 WUBlastX LINE_RTE-BovB 119975 120220 30 - . . scaffold955 GLEAN mRNA 102883 129964 0.99714 + . ID=CGI_10009853; scaffold59 WUBlastX LTR_Gypsy 226926 227204 42 - . . scaffold59 GLEAN mRNA 214884 227564 0.932002 - . ID=CGI_10011277; scaffold36158 WUBlastX LINE_L1-Tx1 18489 18677 41 - . . scaffold36158 GLEAN mRNA 15216 24760 0.784797 + . ID=CGI_10001808; scaffold767 WUBlastX LINE_L1-Tx1 280245 280430 52 + . . scaffold767 GLEAN mRNA 267592 288448 0.433091 + . ID=CGI_10014846; scaffold41972 WUBlastX LINE_L1 97737 97892 56 - . . scaffold41972 GLEAN mRNA 94621 99839 0.620107 - . ID=CGI_10005861; scaffold41972 WUBlastX LINE_L1 97737 97892 56 - . . scaffold41972 GLEAN mRNA 95224 139840 0.240877 + . ID=CGI_10005862; scaffold1209 WUBlastX LTR_Pao 101578 101712 20 - . . scaffold1209 GLEAN mRNA 101278 101793 0.999661 - . ID=CGI_10007965; scaffold226 WUBlastX LTR_Gypsy 468313 468357 25 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold43526 WUBlastX LTR_Pao 169717 169845 20 + . . scaffold43526 GLEAN mRNA 169594 169887 0.999991 + . ID=CGI_10010788; scaffold660 WUBlastX DNA_hAT-Tip100 201436 201957 27 + . . scaffold660 GLEAN mRNA 201436 201984 0.999661 + . ID=CGI_10013753; scaffold1101 WUBlastX LINE_CR1-L2 370895 371110 42 + . . scaffold1101 GLEAN mRNA 366979 390760 0.569292 + . ID=CGI_10023023; scaffold260 WUBlastX LINE_L2 62597 62866 24 + . . scaffold260 GLEAN mRNA 48314 65715 0.848653 - . ID=CGI_10003729; scaffold39804 WUBlastX LINE_L2 53766 53882 20 - . . scaffold39804 GLEAN mRNA 45401 55574 0.999999 - . ID=CGI_10003620; scaffold117 WUBlastX LTR_Gypsy 382840 383316 55 + . . scaffold117 GLEAN mRNA 381424 383832 0.991601 + . ID=CGI_10016969; scaffold1845 WUBlastX LTR_ERV1 130017 130415 45 - . . scaffold1845 GLEAN mRNA 129180 130913 0.999965 - . ID=CGI_10011993; scaffold149 WUBlastX DNA_Harbinger 633718 633897 47 + . . scaffold149 GLEAN mRNA 633695 633907 0.618058 + . ID=CGI_10025313; scaffold40828 WUBlastX LTR_Gypsy 57788 57934 20 - . . scaffold40828 GLEAN mRNA 28348 61048 0.605765 + . ID=CGI_10004502; scaffold39476 WUBlastX LTR_Gypsy 49890 50210 67 + . . scaffold39476 GLEAN mRNA 49505 51682 1 + . ID=CGI_10002876; scaffold1024 WUBlastX DNA_Kolobok-IS4 1757044 1757136 32 + . . scaffold1024 GLEAN mRNA 1751618 1765575 0.556405 - . ID=CGI_10028585; scaffold1024 WUBlastX DNA_Kolobok-IS4 1757149 1757313 22 + . . scaffold1024 GLEAN mRNA 1751618 1765575 0.556405 - . ID=CGI_10028585; scaffold1788 WUBlastX RC_Helitron 45572 45745 50 - . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold39212 WUBlastX DNA_hAT-Tip100 53094 53351 52 - . . scaffold39212 GLEAN mRNA 30679 56961 0.415387 - . ID=CGI_10003233; scaffold422 WUBlastX LINE_Penelope 284899 285276 20 - . . scaffold422 GLEAN mRNA 284593 286595 1 - . ID=CGI_10018805; scaffold469 WUBlastX DNA_P 602085 602297 28 + . . scaffold469 GLEAN mRNA 597386 616988 1 + . ID=CGI_10024688; scaffold469 WUBlastX DNA_P 602085 602297 28 + . . scaffold469 GLEAN mRNA 602076 609647 0.999676 - . ID=CGI_10024689; scaffold1000 WUBlastX LTR_ERV1 273528 273707 44 - . . scaffold1000 GLEAN mRNA 270040 273707 0.558382 - . ID=CGI_10013085; scaffold304 WUBlastX LTR_ERV1 153343 153627 39 - . . scaffold304 GLEAN mRNA 147715 155032 0.999344 - . ID=CGI_10016552; scaffold504 WUBlastX LINE_L1 212731 213033 37 + . . scaffold504 GLEAN mRNA 209248 225927 0.98336 + . ID=CGI_10016026; scaffold401 WUBlastX DNA_TcMar-Tc1 10503 10676 60 + . . scaffold401 GLEAN mRNA 8376 27637 0.998672 + . ID=CGI_10006983; scaffold100 WUBlastX DNA_TcMar-Tc1 440748 440978 58 - . . scaffold100 GLEAN mRNA 434385 451106 0.72825 - . ID=CGI_10026438; scaffold1802 WUBlastX LINE_L1-Tx1 80609 80707 24 + . . scaffold1802 GLEAN mRNA 71908 80776 0.999761 + . ID=CGI_10007150; scaffold1035 WUBlastX DNA_Kolobok 161685 161924 27 - . . scaffold1035 GLEAN mRNA 157961 163458 0.999666 + . ID=CGI_10009365; scaffold313 WUBlastX LINE_RTE-X 1190177 1190278 42 - . . scaffold313 GLEAN mRNA 1180096 1191800 0.492755 + . ID=CGI_10026643; scaffold61 WUBlastX LINE_RTE-X 41748 41906 53 + . . scaffold61 GLEAN mRNA 36076 46070 0.936561 + . ID=CGI_10016337; scaffold479 WUBlastX LINE_RTE-X 308230 308451 23 + . . scaffold479 GLEAN mRNA 298196 323122 0.478892 - . ID=CGI_10015700; scaffold42 WUBlastX LTR_Ngaro 78946 79053 59 - . . scaffold42 GLEAN mRNA 77522 83143 0.592597 - . ID=CGI_10018905; scaffold38438 WUBlastX DNA_TcMar-Marin 54107 54235 70 - . . scaffold38438 GLEAN mRNA 54044 54235 0.618241 - . ID=CGI_10002770; scaffold664 WUBlastX LINE_L1-Tx1 220944 221450 29 - . . scaffold664 GLEAN mRNA 213415 231457 0.897817 + . ID=CGI_10021440; scaffold447 WUBlastX LINE_L1-Tx1 29362 29811 27 + . . scaffold447 GLEAN mRNA 1608 38607 0.995957 + . ID=CGI_10014216; scaffold11 WUBlastX LTR_Gypsy 61407 61811 78 - . . scaffold11 GLEAN mRNA 61086 64490 0.65426 - . ID=CGI_10015522; scaffold1157 WUBlastX LINE_L2 228919 229182 34 - . . scaffold1157 GLEAN mRNA 212503 240416 0.462871 - . ID=CGI_10011221; scaffold198 WUBlastX LINE_CR1-L2 1171222 1171335 66 - . . scaffold198 GLEAN mRNA 1155548 1172013 0.535042 + . ID=CGI_10027850; scaffold198 WUBlastX LINE_CR1-L2 1171222 1171335 66 - . . scaffold198 GLEAN mRNA 1169314 1180690 0.99935 - . ID=CGI_10027851; scaffold142 WUBlastX LINE_CR1-L2 746806 746973 39 + . . scaffold142 GLEAN mRNA 742581 749967 0.999676 + . ID=CGI_10026769; scaffold40182 WUBlastX LINE_CR1 19715 20029 38 + . . scaffold40182 GLEAN mRNA 7136 27863 0.492081 + . ID=CGI_10003936; scaffold67 WUBlastX DNA_hAT-Tip100 28442 28747 39 + . . scaffold67 GLEAN mRNA 22173 32149 1 - . ID=CGI_10018261; scaffold801 WUBlastX DNA_TcMar-Marin 633027 633287 31 + . . scaffold801 GLEAN mRNA 629688 677591 0.460193 - . ID=CGI_10024093; scaffold962 WUBlastX LTR_Pao 350341 350520 31 - . . scaffold962 GLEAN mRNA 349660 355150 0.909734 - . ID=CGI_10027643; scaffold962 WUBlastX LTR_Pao 350641 350871 37 - . . scaffold962 GLEAN mRNA 349660 355150 0.909734 - . ID=CGI_10027643; scaffold1316 WUBlastX LTR_Copia 260830 261228 31 + . . scaffold1316 GLEAN mRNA 259603 261597 0.995793 + . ID=CGI_10016306; scaffold1347 WUBlastX LTR_Gypsy 21903 22289 70 + . . scaffold1347 GLEAN mRNA 21277 29429 0.935835 - . ID=CGI_10012972; scaffold1882 WUBlastX LTR_Gypsy 111232 111612 45 - . . scaffold1882 GLEAN mRNA 110254 111651 0.593389 - . ID=CGI_10010501; scaffold1759 WUBlastX LTR_Gypsy 96653 96700 20 + . . scaffold1759 GLEAN mRNA 83905 106418 0.889634 + . ID=CGI_10010906; scaffold41766 WUBlastX LTR_Gypsy 32362 32613 56 - . . scaffold41766 GLEAN mRNA 24624 37050 0.752559 - . ID=CGI_10005601; scaffold40438 WUBlastX LINE_L2 9326 9350 41 - . . scaffold40438 GLEAN mRNA 8874 9350 0.617633 - . ID=CGI_10004080; scaffold1686 WUBlastX LINE_Jockey 10846 10983 31 + . . scaffold1686 GLEAN mRNA 3495 11949 0.992485 - . ID=CGI_10005072; scaffold43008 WUBlastX LINE_Jockey 20891 21109 52 - . . scaffold43008 GLEAN mRNA 18841 33811 0.999674 - . ID=CGI_10008458; scaffold43844 WUBlastX RC_Helitron 140609 140620 37 + . . scaffold43844 GLEAN mRNA 140609 151100 0.911331 + . ID=CGI_10013147; scaffold43844 WUBlastX RC_Helitron 141075 141296 31 + . . scaffold43844 GLEAN mRNA 140609 151100 0.911331 + . ID=CGI_10013147; scaffold481 WUBlastX DNA_IS4EU 1222683 1222805 49 + . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; C31070 WUBlastX DNA_IS4EU 4265 4654 69 - . . C31070 GLEAN mRNA 4205 5578 0.992577 - . ID=CGI_10000699; scaffold97 WUBlastX DNA_IS4EU 90361 90459 35 - . . scaffold97 GLEAN mRNA 72894 92330 0.60683 - . ID=CGI_10005686; scaffold38364 WUBlastX LTR_Gypsy 13434 13979 43 + . . scaffold38364 GLEAN mRNA 13434 14450 0.986568 + . ID=CGI_10002730; C30140 WUBlastX LTR_Gypsy 1968 2024 40 + . . C30140 GLEAN mRNA 1968 2204 0.618186 + . ID=CGI_10000597; scaffold40216 WUBlastX LTR_Gypsy 20957 21187 32 - . . scaffold40216 GLEAN mRNA 20957 23593 0.998157 - . ID=CGI_10003965; scaffold546 WUBlastX LINE_L1 647635 648216 25 + . . scaffold546 GLEAN mRNA 645146 650884 1 + . ID=CGI_10021019; scaffold40952 WUBlastX DNA_Kolobok-Hyd 56541 56747 26 + . . scaffold40952 GLEAN mRNA 55267 57538 0.797605 + . ID=CGI_10004594; scaffold280 WUBlastX LINE_L1 590196 590813 51 - . . scaffold280 GLEAN mRNA 579437 592170 0.977964 - . ID=CGI_10024596; scaffold962 WUBlastX LINE_L1 901323 901409 40 - . . scaffold962 GLEAN mRNA 895122 910659 0.455688 + . ID=CGI_10027670; scaffold280 WUBlastX LINE_L1 590115 590663 59 - . . scaffold280 GLEAN mRNA 579437 592170 0.977964 - . ID=CGI_10024596; scaffold43520 WUBlastX LINE_Penelope 188920 189144 59 + . . scaffold43520 GLEAN mRNA 184106 230161 0.796254 - . ID=CGI_10010721; scaffold1154 WUBlastX LINE_Penelope 1115898 1116158 43 + . . scaffold1154 GLEAN mRNA 1080378 1140871 0.124336 - . ID=CGI_10026207; scaffold1036 WUBlastX DNA_MuDR 479312 479560 51 - . . scaffold1036 GLEAN mRNA 472347 489883 1 - . ID=CGI_10019970; scaffold599 WUBlastX DNA_P 340699 340724 42 - . . scaffold599 GLEAN mRNA 290478 340724 0.424971 - . ID=CGI_10021714; scaffold598 WUBlastX LINE_RTE-X 4298 4753 64 + . . scaffold598 GLEAN mRNA 1303 4771 0.992797 + . ID=CGI_10001778; scaffold421 WUBlastX LINE_RTE-X 187358 187555 31 + . . scaffold421 GLEAN mRNA 182657 200231 1 + . ID=CGI_10012156; scaffold41466 WUBlastX DNA_PiggyBac 31439 31543 21 - . . scaffold41466 GLEAN mRNA 21923 33174 0.891512 + . ID=CGI_10005137; scaffold41466 WUBlastX DNA_PiggyBac 31611 31703 47 - . . scaffold41466 GLEAN mRNA 21923 33174 0.891512 + . ID=CGI_10005137; scaffold730 WUBlastX DNA_Maverick 102610 103008 23 - . . scaffold730 GLEAN mRNA 102559 103008 0.69447 - . ID=CGI_10019887; scaffold42674 WUBlastX LINE_RTE-BovB 175716 176267 49 - . . scaffold42674 GLEAN mRNA 169493 180850 0.544647 + . ID=CGI_10007448; scaffold1341 WUBlastX LINE_L1 5598 5750 23 - . . scaffold1341 GLEAN mRNA 4451 30218 0.992186 + . ID=CGI_10004662; scaffold1864 WUBlastX LINE_RTE-X 31014 31196 32 - . . scaffold1864 GLEAN mRNA 28119 34115 0.552482 - . ID=CGI_10004430; scaffold43258 WUBlastX DNA_TcMar-Marin 93181 93309 42 - . . scaffold43258 GLEAN mRNA 90747 124672 0.523441 + . ID=CGI_10009633; scaffold950 WUBlastX DNA_TcMar-Pogo 159231 159517 30 + . . scaffold950 GLEAN mRNA 159231 177477 0.94663 + . ID=CGI_10022923; scaffold1638 WUBlastX LTR_Gypsy 129138 129665 25 + . . scaffold1638 GLEAN mRNA 127640 129695 0.999676 + . ID=CGI_10007425; scaffold1638 WUBlastX LTR_Gypsy 131145 131672 25 + . . scaffold1638 GLEAN mRNA 130635 131702 0.999984 + . ID=CGI_10007426; scaffold22 WUBlastX LTR_Gypsy 1819567 1819881 25 + . . scaffold22 GLEAN mRNA 1819528 1821088 0.988961 + . ID=CGI_10028935; scaffold807 WUBlastX LTR_Gypsy 258330 258857 25 - . . scaffold807 GLEAN mRNA 258300 259367 0.999984 - . ID=CGI_10011463; scaffold43064 WUBlastX DNA_TcMar-Tc1 167509 167784 40 - . . scaffold43064 GLEAN mRNA 165128 188165 0.499838 + . ID=CGI_10008633; scaffold138 WUBlastX LINE_L1-Tx1 29733 29906 43 - . . scaffold138 GLEAN mRNA 800 34081 0.879441 + . ID=CGI_10008423; scaffold165 WUBlastX LTR_Copia 33307 33720 21 + . . scaffold165 GLEAN mRNA 33307 33933 1 + . ID=CGI_10015309; scaffold1525 WUBlastX LTR_Pao 277125 277355 39 - . . scaffold1525 GLEAN mRNA 276942 293191 0.993853 - . ID=CGI_10013865; scaffold313 WUBlastX LTR_Pao 1141249 1141578 61 - . . scaffold313 GLEAN mRNA 1139830 1142218 0.91163 - . ID=CGI_10026640; scaffold40948 WUBlastX LINE_L1 27686 27766 25 - . . scaffold40948 GLEAN mRNA 20895 33912 0.999675 - . ID=CGI_10004610; scaffold432 WUBlastX DNA_hAT 369788 369895 56 + . . scaffold432 GLEAN mRNA 366486 371092 0.544852 + . ID=CGI_10023101; scaffold432 WUBlastX DNA_hAT 370029 370154 28 + . . scaffold432 GLEAN mRNA 366486 371092 0.544852 + . ID=CGI_10023101; scaffold241 WUBlastX DNA_TcMar-Fot1 288205 288459 52 - . . scaffold241 GLEAN mRNA 288013 288459 0.999802 - . ID=CGI_10025101; scaffold1127 WUBlastX LTR_Copia 245839 245892 24 + . . scaffold1127 GLEAN mRNA 233331 246292 0.999949 + . ID=CGI_10010656; scaffold507 WUBlastX LINE_CR1-L2 271176 271298 26 + . . scaffold507 GLEAN mRNA 254357 273838 0.999949 - . ID=CGI_10019093; scaffold321 WUBlastX LINE_L2 376692 376991 36 - . . scaffold321 GLEAN mRNA 375881 377069 1 - . ID=CGI_10020809; scaffold1403 WUBlastX LINE_CR1 393159 394067 22 + . . scaffold1403 GLEAN mRNA 387771 394517 0.662471 + . ID=CGI_10020172; scaffold38804 WUBlastX LINE_CR1 32441 32500 25 - . . scaffold38804 GLEAN mRNA 25991 34532 0.371949 - . ID=CGI_10002976; scaffold1349 WUBlastX LINE_L2 156491 156592 30 - . . scaffold1349 GLEAN mRNA 152213 163211 0.538893 - . ID=CGI_10009942; scaffold1349 WUBlastX LINE_L2 156744 156908 34 - . . scaffold1349 GLEAN mRNA 152213 163211 0.538893 - . ID=CGI_10009942; scaffold514 WUBlastX LTR_Gypsy 87698 87862 26 + . . scaffold514 GLEAN mRNA 67103 122805 0.383041 - . ID=CGI_10018346; scaffold1322 WUBlastX LTR_Ngaro 298915 299025 69 - . . scaffold1322 GLEAN mRNA 265135 302274 0.499623 + . ID=CGI_10019472; scaffold204 WUBlastX LTR_Gypsy 117197 117364 23 - . . scaffold204 GLEAN mRNA 100079 117763 0.991044 - . ID=CGI_10026094; scaffold1825 WUBlastX LINE_L2 159910 160122 76 + . . scaffold1825 GLEAN mRNA 146338 162532 0.790331 + . ID=CGI_10011146; scaffold1816 WUBlastX LINE_L2 120106 120333 46 + . . scaffold1816 GLEAN mRNA 110695 122090 0.998785 + . ID=CGI_10014398; scaffold1222 WUBlastX LINE_L2 136465 136788 41 - . . scaffold1222 GLEAN mRNA 134214 152280 0.999999 + . ID=CGI_10016238; scaffold967 WUBlastX LTR_Gypsy 144020 144238 52 - . . scaffold967 GLEAN mRNA 143924 144238 0.999304 - . ID=CGI_10015456; scaffold1680 WUBlastX LTR_Gypsy 69782 70291 64 + . . scaffold1680 GLEAN mRNA 60137 87573 0.648461 - . ID=CGI_10004140; scaffold38364 WUBlastX LTR_Gypsy 13569 13922 71 + . . scaffold38364 GLEAN mRNA 13434 14450 0.986568 + . ID=CGI_10002730; scaffold41210 WUBlastX LTR_Gypsy 102673 102702 27 + . . scaffold41210 GLEAN mRNA 102622 102807 0.732703 + . ID=CGI_10004806; scaffold86 WUBlastX LTR_Gypsy 1277453 1278139 41 - . . scaffold86 GLEAN mRNA 1231261 1279248 0.605603 + . ID=CGI_10028197; scaffold242 WUBlastX LTR_Gypsy 128787 128966 33 + . . scaffold242 GLEAN mRNA 126246 129428 0.931496 + . ID=CGI_10007086; scaffold43396 WUBlastX DNA_Harbinger 189268 189459 61 + . . scaffold43396 GLEAN mRNA 168401 199028 0.999996 + . ID=CGI_10010150; scaffold394 WUBlastX DNA_Harbinger 493410 493547 42 + . . scaffold394 GLEAN mRNA 488659 515899 0.813951 - . ID=CGI_10022088; scaffold41472 WUBlastX DNA_Harbinger 14493 14918 24 + . . scaffold41472 GLEAN mRNA 5767 21457 0.999674 - . ID=CGI_10005140; scaffold760 WUBlastX DNA_Harbinger 872316 872456 40 + . . scaffold760 GLEAN mRNA 869090 882371 0.544755 + . ID=CGI_10024019; scaffold1345 WUBlastX LINE_L1 396339 396623 31 - . . scaffold1345 GLEAN mRNA 390905 398842 0.996685 - . ID=CGI_10016288; scaffold40556 WUBlastX LTR_Gypsy 88583 88975 37 - . . scaffold40556 GLEAN mRNA 88418 88975 0.618241 - . ID=CGI_10004254; scaffold1221 WUBlastX LTR_Gypsy 8048 8222 42 - . . scaffold1221 GLEAN mRNA 6329 8222 0.996819 - . ID=CGI_10019721; scaffold1237 WUBlastX LTR_Gypsy 258252 258395 21 + . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold1741 WUBlastX DNA_IS4EU 609859 610026 29 + . . scaffold1741 GLEAN mRNA 575954 614216 0.201236 + . ID=CGI_10024047; scaffold1639 WUBlastX DNA_IS4EU 83241 83354 38 - . . scaffold1639 GLEAN mRNA 82644 83780 1 - . ID=CGI_10005439; scaffold1896 WUBlastX LINE_I 66811 66951 56 + . . scaffold1896 GLEAN mRNA 47123 84507 0.989491 + . ID=CGI_10019634; scaffold1788 WUBlastX RC_Helitron 45691 45933 30 - . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold1671 WUBlastX RC_Helitron 221442 221831 29 + . . scaffold1671 GLEAN mRNA 221124 227498 0.633477 + . ID=CGI_10015147; scaffold1671 WUBlastX RC_Helitron 222780 222869 26 + . . scaffold1671 GLEAN mRNA 221124 227498 0.633477 + . ID=CGI_10015147; scaffold1213 WUBlastX DNA_hAT-Tip100 358789 358974 30 + . . scaffold1213 GLEAN mRNA 350181 406483 0.805895 + . ID=CGI_10027449; scaffold1541 WUBlastX DNA_hAT-Tip100 375270 375413 75 - . . scaffold1541 GLEAN mRNA 363847 377632 0.999999 - . ID=CGI_10017897; scaffold41786 WUBlastX DNA_hAT-Tip100 111589 111762 61 + . . scaffold41786 GLEAN mRNA 109063 112441 0.994534 + . ID=CGI_10005626; scaffold39212 WUBlastX DNA_hAT-Tip100 54215 55078 53 - . . scaffold39212 GLEAN mRNA 30679 56961 0.415387 - . ID=CGI_10003233; scaffold896 WUBlastX LINE_Jockey 123653 123814 44 + . . scaffold896 GLEAN mRNA 120712 129433 0.394415 + . ID=CGI_10022834; scaffold783 WUBlastX LINE_L1-Tx1 287514 287648 21 + . . scaffold783 GLEAN mRNA 271175 288350 0.999949 + . ID=CGI_10011687; scaffold348 WUBlastX DNA_Kolobok 720201 720326 59 + . . scaffold348 GLEAN mRNA 715076 738533 0.987905 - . ID=CGI_10023001; scaffold659 WUBlastX DNA_P 11285 11830 29 + . . scaffold659 GLEAN mRNA 29 26278 0.692942 + . ID=CGI_10014692; scaffold1255 WUBlastX DNA_P 7871 8230 42 - . . scaffold1255 GLEAN mRNA 3472 8230 0.999979 - . ID=CGI_10018055; scaffold1016 WUBlastX DNA_P 283867 284538 43 - . . scaffold1016 GLEAN mRNA 272595 292035 0.804509 - . ID=CGI_10016891; scaffold1053 WUBlastX LINE_Penelope 25832 26269 24 + . . scaffold1053 GLEAN mRNA 8937 30128 0.621486 - . ID=CGI_10014292; scaffold705 WUBlastX LINE_Penelope 344889 344951 34 - . . scaffold705 GLEAN mRNA 340127 351838 0.495675 + . ID=CGI_10015517; scaffold43296 WUBlastX LTR_ERV1 121521 121610 30 - . . scaffold43296 GLEAN mRNA 94377 121610 0.537251 - . ID=CGI_10009743; scaffold793 WUBlastX LINE_Penelope 71962 72099 45 + . . scaffold793 GLEAN mRNA 61685 72905 0.384935 + . ID=CGI_10010892; scaffold587 WUBlastX DNA_TcMar-Stowa 2562 2816 60 + . . scaffold587 GLEAN mRNA 1966 7737 0.999375 - . ID=CGI_10006887; scaffold1670 WUBlastX DNA_TcMar-Marin 44050 44184 46 - . . scaffold1670 GLEAN mRNA 20416 44429 0.542324 + . ID=CGI_10017595; scaffold37532 WUBlastX DNA_TcMar-Marin 42912 43092 52 - . . scaffold37532 GLEAN mRNA 24867 43092 0.82218 + . ID=CGI_10002401; scaffold1791 WUBlastX LINE_L1 67577 67939 32 + . . scaffold1791 GLEAN mRNA 66923 91200 0.835531 + . ID=CGI_10007866; scaffold835 WUBlastX LINE_L1 210810 211259 23 - . . scaffold835 GLEAN mRNA 209952 211574 0.998234 - . ID=CGI_10016113; scaffold1584 WUBlastX LINE_L1 20967 21182 56 + . . scaffold1584 GLEAN mRNA 17588 32625 0.463442 - . ID=CGI_10015070; scaffold880 WUBlastX DNA_Kolobok-Hyd 617251 617352 23 - . . scaffold880 GLEAN mRNA 617251 619729 0.637182 - . ID=CGI_10022203; scaffold43842 WUBlastX DNA_IS4EU 249662 249715 29 + . . scaffold43842 GLEAN mRNA 222782 252762 0.997279 - . ID=CGI_10013106; scaffold43842 WUBlastX DNA_IS4EU 249662 249715 29 + . . scaffold43842 GLEAN mRNA 238630 263260 0.526049 + . ID=CGI_10013107; scaffold43842 WUBlastX DNA_IS4EU 249721 249906 54 + . . scaffold43842 GLEAN mRNA 222782 252762 0.997279 - . ID=CGI_10013106; scaffold43842 WUBlastX DNA_IS4EU 249721 249906 54 + . . scaffold43842 GLEAN mRNA 238630 263260 0.526049 + . ID=CGI_10013107; scaffold1634 WUBlastX LINE_Penelope 25964 26149 37 - . . scaffold1634 GLEAN mRNA 15859 29432 0.999999 - . ID=CGI_10005150; scaffold667 WUBlastX LINE_CR1 18439 18756 44 + . . scaffold667 GLEAN mRNA 6729 22533 0.999844 - . ID=CGI_10005354; scaffold705 WUBlastX LINE_Penelope 345474 345770 29 - . . scaffold705 GLEAN mRNA 340127 351838 0.495675 + . ID=CGI_10015517; scaffold474 WUBlastX LINE_RTE-BovB 176621 176896 20 + . . scaffold474 GLEAN mRNA 173461 184050 0.256829 - . ID=CGI_10007598; scaffold72 WUBlastX LINE_RTE-X 470575 470739 39 - . . scaffold72 GLEAN mRNA 461855 471601 0.990886 + . ID=CGI_10017848; scaffold1281 WUBlastX LINE_RTE-BovB 3938 4031 43 - . . scaffold1281 GLEAN mRNA 1556 4031 0.999114 - . ID=CGI_10001419; scaffold1703 WUBlastX LINE_RTE-BovB 418737 419051 76 + . . scaffold1703 GLEAN mRNA 410303 422392 0.738334 - . ID=CGI_10023058; scaffold1725 WUBlastX LTR_Gypsy 49892 49900 47 + . . scaffold1725 GLEAN mRNA 49892 50281 0.999275 - . ID=CGI_10004730; scaffold481 WUBlastX LTR_Copia 1080699 1080833 40 + . . scaffold481 GLEAN mRNA 1067271 1084850 0.999364 + . ID=CGI_10027261; scaffold686 WUBlastX DNA_PiggyBac 32641 32751 38 + . . scaffold686 GLEAN mRNA 23498 37370 0.50665 - . ID=CGI_10004462; scaffold42890 WUBlastX LINE_RTE-X 85531 85602 33 + . . scaffold42890 GLEAN mRNA 82665 91191 0.716263 - . ID=CGI_10008040; scaffold42890 WUBlastX LINE_RTE-X 85531 85602 33 + . . scaffold42890 GLEAN mRNA 76174 91402 0.99612 + . ID=CGI_10008039; scaffold78 WUBlastX LINE_RTE-X 128337 128474 29 + . . scaffold78 GLEAN mRNA 127507 134383 0.999992 - . ID=CGI_10006916; scaffold113 WUBlastX LINE_RTE-X 173083 173190 51 - . . scaffold113 GLEAN mRNA 167918 175905 0.777732 + . ID=CGI_10021288; scaffold43726 WUBlastX LINE_RTE-X 193091 193216 46 + . . scaffold43726 GLEAN mRNA 189584 195489 0.999572 - . ID=CGI_10012025; scaffold39974 WUBlastX LINE_RTE-X 67732 67989 49 + . . scaffold39974 GLEAN mRNA 67732 80297 0.969362 + . ID=CGI_10003760; scaffold394 WUBlastX LTR_Gypsy 554161 554403 25 + . . scaffold394 GLEAN mRNA 549658 560561 0.811205 + . ID=CGI_10022093; scaffold43280 WUBlastX DNA_Sola 29195 29335 22 - . . scaffold43280 GLEAN mRNA 27245 29335 1 - . ID=CGI_10009653; scaffold101 WUBlastX DNA_Sola 33666 34166 41 - . . scaffold101 GLEAN mRNA 33597 35334 0.999952 - . ID=CGI_10021632; scaffold1810 WUBlastX DNA_Sola 8123 8248 86 + . . scaffold1810 GLEAN mRNA 7368 11444 0.979898 + . ID=CGI_10007553; scaffold787 WUBlastX LINE_RTE-X 242077 242286 66 + . . scaffold787 GLEAN mRNA 219328 253031 0.970021 - . ID=CGI_10011650; C30632 WUBlastX DNA_Zator 805 845 47 + . . C30632 GLEAN mRNA 805 4646 0.999997 + . ID=CGI_10000645; scaffold719 WUBlastX LINE_L1-Tx1 169331 169657 23 + . . scaffold719 GLEAN mRNA 161242 177672 0.53602 - . ID=CGI_10016002; scaffold1213 WUBlastX DNA_Transib 669104 669283 58 - . . scaffold1213 GLEAN mRNA 659525 674092 0.331119 - . ID=CGI_10027461; scaffold117 WUBlastX DNA_TcMar-Tc1 355991 356095 53 + . . scaffold117 GLEAN mRNA 354523 361880 0.986806 - . ID=CGI_10016967;