Basic Statistics
Measure | Value |
---|---|
Filename | filtered_174gm_A_BiGosperm_L006_R2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 171582441 |
Filtered Sequences | 0 |
Sequence length | 76 |
%GC | 18 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Kmer Content
Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGGGG | 1470430 | 61084.34 | 341843.34 | 41 |
GAGCG | 14643965 | 2415.3853 | 11359.559 | 72 |
CGGGG | 247955 | 1101.6149 | 18436.523 | 39 |
GGAAG | 19107165 | 1094.0151 | 4627.327 | 72 |
GGGGC | 221220 | 982.83655 | 13668.534 | 42 |
GGGCG | 198920 | 883.7621 | 14249.549 | 43 |
GGTGG | 362950 | 843.0632 | 10537.728 | 72 |
GGCGG | 150555 | 668.886 | 14154.308 | 13 |
GCGGG | 140940 | 626.16846 | 14055.603 | 14 |
GTAGG | 6945215 | 598.9214 | 3745.601 | 72 |
AGGGG | 383215 | 591.0155 | 6633.149 | 28 |
GGGGA | 359065 | 553.76996 | 8866.018 | 21 |
TAGGG | 6314050 | 544.4928 | 3501.7385 | 72 |
GAGGG | 277330 | 427.71375 | 4857.0283 | 27 |
GCGTC | 12829540 | 340.85315 | 1714.8082 | 72 |
GGGAG | 218980 | 337.72308 | 4255.6216 | 30 |
TGGGG | 145180 | 337.22534 | 3153.4482 | 20 |
AGGGA | 5811895 | 332.77057 | 2205.892 | 72 |
CGTCG | 11985830 | 318.43756 | 1655.1895 | 72 |
GGGAA | 5528620 | 316.55112 | 2130.4165 | 72 |
GGGGT | 128410 | 298.2718 | 4113.9976 | 41 |
GTGGG | 117080 | 271.95444 | 2214.944 | 19 |
GGGTG | 105290 | 244.56845 | 2084.8347 | 43 |
GGAGG | 152775 | 235.61804 | 3603.2603 | 18 |
GAGTG | 2602620 | 224.43724 | 1959.0343 | 72 |
GATCG | 24299310 | 224.10396 | 820.4318 | 72 |
ATCGG | 22761360 | 209.91998 | 792.56854 | 72 |
TCGGA | 21529705 | 198.56087 | 783.0041 | 72 |
GTCGT | 10891575 | 151.28758 | 815.4043 | 72 |
TCGTG | 10015580 | 139.11972 | 793.9742 | 72 |
CGTGT | 9183370 | 127.56005 | 742.02893 | 72 |
AGCGT | 13723025 | 126.56263 | 603.624 | 72 |
CGGAA | 20407110 | 124.96261 | 507.97742 | 72 |
AGAGC | 15978710 | 97.84537 | 444.6056 | 72 |
CGGTG | 367570 | 91.31137 | 1337.9324 | 72 |
GTGTA | 10447480 | 50.375977 | 330.6555 | 72 |
TCGGG | 194335 | 48.276505 | 964.1055 | 38 |
TGTAG | 9477720 | 45.69996 | 310.1067 | 72 |
AAGAG | 20671395 | 43.940773 | 223.70648 | 72 |
GGTCG | 173940 | 43.21 | 579.5441 | 72 |
GGCGC | 89945 | 42.737133 | 1399.8507 | 44 |
GGGCC | 88055 | 41.839108 | 827.2551 | 45 |
GAAGA | 18180495 | 38.645916 | 165.46942 | 72 |
GCGCG | 76245 | 36.22762 | 122.804016 | 72 |
CCGGG | 75685 | 35.961536 | 808.8547 | 39 |
GCGGC | 74020 | 35.17041 | 590.88007 | 11 |
CGGCG | 72355 | 34.379295 | 586.017 | 12 |
GCCGG | 67040 | 31.853886 | 552.4763 | 47 |
GTGGT | 231265 | 30.036623 | 443.30316 | 72 |
GGCCG | 61585 | 29.261955 | 331.37814 | 46 |
GTCGG | 94880 | 23.569994 | 272.91867 | 13 |
AAGGG | 340355 | 19.487638 | 213.49615 | 27 |
CGCGG | 40300 | 19.148443 | 70.08032 | 15 |
CGCCG | 323720 | 16.45013 | 209.64014 | 46 |
CGGGA | 96530 | 15.921722 | 332.21796 | 4 |
CTCGG | 598370 | 15.897396 | 209.86096 | 72 |
CGGGT | 63830 | 15.856585 | 370.42877 | 15 |
GAGAG | 248035 | 14.201693 | 98.97464 | 7 |
GGCGT | 54780 | 13.608393 | 139.28078 | 13 |
CGTGG | 54285 | 13.485425 | 118.698456 | 15 |
AGAGG | 230300 | 13.186243 | 175.30621 | 26 |
GGGTC | 52355 | 13.005975 | 330.5506 | 42 |
CGGGC | 27295 | 12.969149 | 35.59984 | 42 |
GGAAA | 5568205 | 11.836222 | 80.17751 | 72 |
GCGTG | 46870 | 11.643398 | 132.7631 | 14 |
AGTGT | 2338620 | 11.276431 | 97.87545 | 72 |
AGCGG | 66325 | 10.93969 | 209.74323 | 10 |
GGGTA | 125670 | 10.837166 | 192.46942 | 29 |
GAAGG | 182170 | 10.430472 | 96.47737 | 72 |
GGTAG | 118290 | 10.200751 | 173.07347 | 30 |
AGGGC | 61735 | 10.182612 | 69.898735 | 11 |
GAAAG | 4769775 | 10.139016 | 74.55352 | 72 |
TTGGG | 76690 | 9.960472 | 95.040085 | 38 |
AGAGT | 3056185 | 9.784409 | 78.81701 | 72 |
AGGGT | 113215 | 9.763109 | 202.34413 | 28 |
AGATC | 26962930 | 9.231951 | 35.73861 | 72 |
CCGCG | 169780 | 8.627527 | 10.951615 | 48 |
GTGCG | 31270 | 7.7680616 | 29.330425 | 72 |
GCGCC | 149875 | 7.616036 | 151.93724 | 45 |
GGAGA | 132290 | 7.5745025 | 151.94344 | 31 |
TCGCG | 277215 | 7.3650026 | 11.772322 | 71 |
ACGGG | 42910 | 7.077604 | 109.3006 | 3 |
CGACG | 400110 | 7.0579505 | 10.984826 | 71 |
GTGTG | 54145 | 7.032335 | 116.64642 | 72 |
CGCGC | 133860 | 6.802219 | 8.707419 | 47 |
TGGGA | 78415 | 6.762127 | 73.12199 | 4 |
CGCGA | 383240 | 6.760363 | 7.461766 | 14 |
CCCCC | 11325780 | 6.5828023 | 7.6132603 | 26 |
CGGAG | 39365 | 6.4928894 | 64.309875 | 5 |
TCGGT | 466100 | 6.474283 | 87.32546 | 72 |
CAGGG | 38330 | 6.3221755 | 32.298798 | 72 |
GCGGT | 24335 | 6.045276 | 23.327967 | 48 |
GTAGA | 1884245 | 6.03243 | 56.46908 | 72 |
CGCGT | 226520 | 6.0181465 | 11.73407 | 71 |
GCAGG | 36325 | 5.99147 | 38.71106 | 72 |
GTTGG | 44945 | 5.837442 | 79.83682 | 18 |
CTGGG | 23205 | 5.7645626 | 121.400696 | 39 |
GGTGC | 22195 | 5.513659 | 156.64548 | 44 |
TGTGG | 42125 | 5.4711814 | 34.99394 | 40 |
AGGCG | 32660 | 5.386962 | 45.027657 | 12 |
GGGTT | 37510 | 4.871786 | 38.346954 | 16 |
GTCGC | 182715 | 4.8543425 | 53.65512 | 44 |
ATGGG | 56205 | 4.846844 | 38.10708 | 3 |
ACGCG | 269685 | 4.7572503 | 5.323781 | 3 |
GTGGC | 18970 | 4.712508 | 51.246502 | 45 |
GGTGT | 35640 | 4.628911 | 19.261332 | 71 |
GGACG | 27570 | 4.547414 | 37.404884 | 1 |
TGGGC | 18100 | 4.4963837 | 106.93232 | 42 |
GGTTG | 33905 | 4.40357 | 39.790337 | 17 |
GCCGT | 160295 | 4.258692 | 83.82834 | 47 |
GACGG | 25555 | 4.215059 | 37.539417 | 2 |
GGGCT | 14825 | 3.6828115 | 24.15788 | 43 |
TGGTG | 28255 | 3.6697502 | 25.44466 | 39 |
GGAGC | 21990 | 3.627045 | 25.363111 | 44 |
GCCGC | 71000 | 3.6079304 | 38.43338 | 47 |
GGGCA | 21645 | 3.5701406 | 16.030079 | 70 |
GTGGA | 41255 | 3.5576298 | 36.54572 | 16 |
GCCCG | 69655 | 3.539583 | 52.90306 | 47 |
GAGGC | 19880 | 3.2790205 | 32.30214 | 11 |
TGGCG | 13095 | 3.2530468 | 21.1982 | 46 |
GGCAG | 19270 | 3.1784067 | 12.4682865 | 72 |
TGGAG | 36750 | 3.1691406 | 38.744102 | 17 |
TGCGG | 12545 | 3.1164162 | 17.448954 | 40 |
GCTGG | 12530 | 3.11269 | 10.750049 | 14 |
GATGG | 35935 | 3.098859 | 18.9744 | 2 |
GGGAC | 18340 | 3.0250118 | 14.199791 | 42 |
GGCTG | 12005 | 2.98227 | 10.031798 | 13 |
GCGGA | 17700 | 2.9194498 | 17.519659 | 16 |
AGGAG | 50880 | 2.9132264 | 16.797491 | 72 |
TGGGT | 22050 | 2.8638468 | 26.292616 | 42 |
GTCCG | 107365 | 2.8524559 | 5.048272 | 13 |
GCGAG | 15640 | 2.579672 | 11.755813 | 72 |
GAACG | 420670 | 2.575966 | 7.2453265 | 72 |
GGCCC | 49360 | 2.5082738 | 58.713146 | 46 |
GGATG | 28665 | 2.4719293 | 19.059546 | 1 |
GGGAT | 27970 | 2.4119964 | 23.3713 | 33 |
GAGGA | 40985 | 2.3466704 | 15.920117 | 29 |
GACCG | 128185 | 2.2611868 | 5.1177864 | 71 |
TGGTC | 159530 | 2.2159245 | 38.145203 | 72 |
GCGAC | 124380 | 2.1940663 | 6.7559857 | 71 |
TCTCG | 1420725 | 2.1105423 | 14.694156 | 72 |
GAGCA | 338005 | 2.0697682 | 9.572741 | 71 |
AGTGG | 22815 | 1.9674542 | 13.037465 | 72 |
AGCGC | 109480 | 1.93123 | 26.288101 | 72 |
CGAGG | 11495 | 1.895993 | 11.70426 | 40 |
GAGGT | 21975 | 1.8950168 | 11.803701 | 41 |
CGCCC | 343155 | 1.8649259 | 7.8270316 | 46 |
AGGTG | 21165 | 1.8251663 | 7.9612236 | 12 |
TAGAT | 10116565 | 1.810989 | 8.029562 | 72 |
GTGAG | 20400 | 1.7591964 | 11.237053 | 72 |
GGCGA | 10635 | 1.754144 | 5.7616444 | 44 |
GCCGA | 96410 | 1.7006748 | 6.0389643 | 47 |
GGTGA | 19380 | 1.6712364 | 30.360949 | 31 |
AAGAT | 13807315 | 1.6410997 | 5.655627 | 72 |
AAGCG | 265645 | 1.6266727 | 7.401827 | 72 |
CAGAT | 4714305 | 1.6141505 | 5.329566 | 72 |
TGAGG | 17775 | 1.532829 | 6.3367167 | 40 |
GCGTA | 159175 | 1.4680148 | 5.192066 | 71 |
CCCGG | 28275 | 1.43682 | 10.8333645 | 38 |
GGAGT | 16595 | 1.4310716 | 8.412937 | 34 |
CCGTG | 53405 | 1.4188554 | 7.555148 | 72 |
TCGCC | 496535 | 1.4108391 | 6.8823757 | 45 |
CGGCC | 23755 | 1.2071322 | 8.068712 | 46 |
CCGGA | 67770 | 1.1954645 | 15.46066 | 48 |
CGTGC | 41710 | 1.1081445 | 6.436221 | 72 |
TCCGG | 39080 | 1.0382711 | 37.973373 | 38 |
TTCGG | 74625 | 1.0365659 | 19.257248 | 37 |
ACCGG | 55905 | 0.9861656 | 5.812959 | 3 |
CGTAG | 91425 | 0.8431805 | 5.195527 | 72 |
AGAGA | 392155 | 0.8335961 | 5.2366776 | 71 |
CGTGA | 81105 | 0.74800277 | 10.142067 | 72 |
GCCCC | 133735 | 0.72680235 | 5.4837427 | 47 |
GATCT | 1332150 | 0.6869681 | 6.387825 | 72 |
AAAGG | 302740 | 0.64352834 | 8.011515 | 26 |
CCGGT | 20900 | 0.5552678 | 7.9623227 | 49 |
AACGG | 88625 | 0.54269373 | 6.0465646 | 2 |
GTGCC | 17490 | 0.4646715 | 16.308176 | 45 |
TGCCG | 14240 | 0.378326 | 11.526808 | 46 |
CGGAT | 34255 | 0.31592178 | 7.9369807 | 49 |
TCTGG | 15845 | 0.22009228 | 5.2122135 | 38 |
GGATC | 23505 | 0.21677832 | 5.544605 | 50 |