================================================== file name: oyster.v9_90.fa sequences: 1670 total length: 502809129 bp (442864917 bp excl N/X-runs) GC level: 33.43 % bases masked: 9908939 bp ( 1.97 %) ================================================== number of length percentage elements* occupied of sequence -------------------------------------------------- SINEs: 434 33433 bp 0.01 % ALUs 0 0 bp 0.00 % MIRs 326 26517 bp 0.01 % LINEs: 1280 123649 bp 0.02 % LINE1 210 29157 bp 0.01 % LINE2 193 18729 bp 0.00 % L3/CR1 831 71696 bp 0.01 % LTR elements: 195 92957 bp 0.02 % ERVL 3 177 bp 0.00 % ERVL-MaLRs 1 43 bp 0.00 % ERV_classI 63 6706 bp 0.00 % ERV_classII 6 361 bp 0.00 % DNA elements: 829 83359 bp 0.02 % hAT-Charlie 16 834 bp 0.00 % TcMar-Tigger 290 13882 bp 0.00 % Unclassified: 8 765 bp 0.00 % Total interspersed repeats: 334163 bp 0.07 % Small RNA: 1784 124101 bp 0.02 % Satellites: 22 2599 bp 0.00 % Simple repeats: 63628 3734725 bp 0.74 % Low complexity: 150446 5721782 bp 1.14 % ================================================== * most repeats fragmented by insertions or deletions have been counted as one element The query species was assumed to be homo RepeatMasker version open-3.3.0 , default mode run with rmblastn version : 2.2.27+ RepBase Update 20120418, RM database version 20120418