oyster.v9_M.fa.s1.2.7.7.80.10.50.500.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold22
Parameters: 2 7 7 80 10 50 500
Length:  1964558

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 655 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1839208--1839539	160	2.1	160	81	5	386	39	16	20	22	1.92
1839208--1839584	159	2.4	159	80	4	377	40	15	19	23	1.90
1840030--1840140	54	2.1	53	96	3	206	33	11	17	36	1.86
1841670--1841715	25	2.0	24	83	12	60	52	2	10	34	1.49
1843900--1844008	53	2.1	53	98	0	209	17	24	19	38	1.93
1843948--1844208	66	3.9	66	81	8	280	15	21	15	47	1.83
1843958--1844207	133	1.9	133	84	6	337	14	21	16	47	1.82
1844214--1844238	3	8.3	3	100	0	50	32	0	0	68	0.90
1845331--1846315	436	2.3	433	85	4	1300	35	15	17	31	1.91
1847312--1847389	31	2.5	31	87	0	102	25	10	20	43	1.83
1847340--1847407	31	2.2	31	84	7	86	27	11	19	41	1.86
1847972--1849066	436	2.5	435	90	1	1681	34	15	17	32	1.92
1854006--1854045	4	10.0	4	83	0	53	27	25	2	45	1.66
1860709--1860745	18	2.0	19	89	5	58	24	59	0	16	1.37
1865386--1865439	9	6.1	9	82	18	51	0	1	16	81	0.78
1867383--1867407	2	12.5	2	100	0	50	48	0	0	52	1.00
1870674--1870703	12	2.6	12	94	5	53	93	6	0	0	0.35
1873216--1873294	2	39.5	2	100	0	158	50	0	49	0	1.00
1874414--1874446	17	1.9	17	93	0	57	63	3	0	33	1.10
1876314--1876768	163	2.8	164	81	5	481	32	18	17	31	1.94
1876397--1876772	168	2.3	163	83	4	461	32	16	18	32	1.93
1879835--1879975	21	6.7	21	76	0	138	39	17	24	17	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1879851--1879955	42	2.5	42	92	0	174	39	20	22	17	1.93
1880967--1881100	21	6.4	21	78	10	121	39	18	23	18	1.92
1880977--1881080	42	2.5	42	93	0	181	39	21	22	17	1.92
1881740--1881764	13	1.9	13	100	0	50	92	8	0	0	0.40
1888061--1888094	1	34.0	1	87	0	50	0	0	5	94	0.32
1889168--1889206	11	3.5	11	83	10	53	41	12	28	17	1.87
1890186--1890272	21	4.2	21	78	12	83	40	22	9	27	1.85
1890527--1890575	21	2.3	21	96	0	89	38	24	10	26	1.87
1898411--1898830	182	2.3	182	97	0	795	24	26	23	25	2.00
1899094--1899163	21	3.3	21	80	11	65	31	8	21	38	1.83
1899424--1899470	21	2.3	20	85	7	67	27	8	17	46	1.76
1900532--1900742	21	10.1	20	74	16	169	19	22	17	40	1.91
1900509--1900726	42	5.2	42	97	0	393	18	21	18	41	1.91
1902779--1902823	21	2.1	21	87	0	63	20	15	17	46	1.84
1907082--1907138	2	28.5	2	92	0	96	0	45	0	54	0.99
1909856--1910327	183	2.6	183	82	4	517	31	18	15	33	1.93
1912457--1912501	2	22.5	2	81	0	54	51	8	40	0	1.33
1912461--1912505	6	7.5	6	97	0	72	51	11	37	0	1.38
1912499--1912529	4	7.8	4	92	0	53	48	22	29	0	1.51
1915342--1915387	2	23.0	2	100	0	92	50	0	50	0	1.00
1915775--1915813	11	3.6	11	82	3	53	35	12	25	25	1.92
1918971--1918998	11	2.5	11	100	0	56	17	35	7	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1923269--1923474	95	2.2	95	91	3	326	38	12	13	35	1.81
1925977--1926018	14	3.1	13	78	21	50	38	7	35	19	1.79
1929569--1929745	4	44.2	4	100	0	354	24	24	0	50	1.50
1943240--1943326	20	4.2	20	76	8	86	22	16	43	17	1.87
1943272--1943326	10	5.5	10	75	0	56	23	16	43	16	1.87
1944316--1944363	2	24.0	2	100	0	96	50	0	50	0	1.00
1945257--1945290	2	17.0	2	87	0	50	50	0	50	0	1.00
1947012--1947060	21	2.3	21	92	0	80	38	16	26	18	1.91
1949672--1949712	2	20.5	2	100	0	82	51	0	48	0	1.00
1956863--1956891	13	2.3	13	94	5	51	34	0	13	51	1.42
1961472--1961537	34	1.9	34	96	0	123	30	12	22	34	1.91

Tables:   1   2   3   4   5   6

The End!