oyster.v9_M.fa.s11.2.7.7.80.10.50.500.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold257
Parameters: 2 7 7 80 10 50 500
Length:  1615106

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 556 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1317647--1317718	2	36.5	2	91	2	110	0	52	0	47	1.00
1321826--1322003	10	17.7	10	69	12	71	24	12	17	45	1.83
1321826--1321954	60	2.2	59	80	8	136	24	11	17	46	1.81
1322846--1322877	2	16.0	2	100	0	64	0	50	0	50	1.00
1323192--1323232	2	20.5	2	100	0	82	0	51	0	48	1.00
1331324--1331375	2	26.0	2	88	7	79	0	46	3	50	1.20
1336427--1336460	14	2.5	13	86	13	50	32	17	11	38	1.86
1340075--1340107	12	2.8	12	95	4	59	0	30	27	42	1.56
1340277--1342665	166	14.5	165	85	5	2959	33	16	23	26	1.95
1340491--1340516	13	2.0	13	100	0	52	30	30	15	23	1.95
1340367--1340648	149	1.9	148	88	5	426	34	18	21	25	1.96
1340515--1342665	331	6.5	330	85	4	2818	33	15	24	26	1.95
1343437--1343461	11	2.3	11	100	0	50	40	8	8	44	1.63
1343960--1345166	166	7.2	166	91	2	1823	26	25	15	32	1.96
1343960--1345166	331	3.6	331	91	1	1853	26	25	15	32	1.96
1343960--1345157	497	2.4	497	90	2	1866	25	25	15	32	1.96
1345331--1345377	4	12.0	4	84	4	51	40	25	34	0	1.56
1345330--1345377	20	2.5	20	89	3	80	39	25	35	0	1.56
1355690--1355755	2	33.0	2	100	0	132	0	50	0	50	1.00
1362876--1363114	31	7.7	31	89	0	361	41	19	15	23	1.90
1363485--1363718	101	2.4	97	82	7	276	29	20	14	35	1.92
1365043--1365085	2	21.5	2	100	0	86	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1367413--1367442	2	15.0	2	100	0	60	0	50	0	50	1.00
1369038--1369204	20	8.2	20	73	10	124	27	10	9	52	1.66
1369038--1369208	81	2.1	81	80	9	181	27	10	9	52	1.66
1371213--1371266	25	2.1	26	82	3	65	40	22	11	25	1.87
1372674--1372718	2	22.5	2	100	0	90	51	0	48	0	1.00
1376615--1376646	2	16.0	2	93	0	55	46	0	3	50	1.17
1377505--1377568	2	32.0	2	100	0	128	50	0	50	0	1.00
1379879--1379923	4	10.8	4	81	9	54	44	24	26	4	1.72
1385639--1385860	36	6.2	36	77	9	168	33	19	18	29	1.95
1385639--1385982	73	4.8	73	78	6	265	32	19	18	29	1.96
1385741--1385985	36	6.8	35	76	5	168	30	20	19	28	1.97
1385782--1385983	109	1.9	108	82	3	253	31	21	19	28	1.97
1387038--1387085	22	2.1	24	88	7	73	8	27	22	41	1.82
1387111--1387780	59	11.3	59	90	2	948	28	16	19	35	1.94
1387111--1387780	120	5.6	118	89	2	948	28	16	19	35	1.94
1387111--1387780	179	3.7	179	91	1	999	28	16	19	35	1.94
1388330--1388774	59	7.6	59	88	6	647	27	16	19	36	1.93
1388330--1388774	170	2.5	170	90	4	676	27	16	19	36	1.93
1389303--1389501	76	2.6	76	76	1	211	35	14	16	34	1.89
1389450--1389732	113	2.5	109	91	3	440	32	16	14	36	1.90
1390345--1390370	12	2.2	12	100	0	52	30	23	30	15	1.95
1394727--1395982	166	7.6	165	88	2	1698	33	15	22	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1398961--1398996	17	2.1	17	89	0	54	11	11	52	25	1.69
1409123--1409168	21	2.2	21	84	0	56	41	23	10	23	1.86
1412568--1412605	2	19.0	2	100	0	76	0	50	0	50	1.00
1422302--1422353	26	2.0	26	92	0	86	23	30	11	34	1.90
1422850--1422979	26	5.0	26	98	0	242	23	30	11	34	1.90
1424523--1424548	13	2.0	13	100	0	52	38	7	7	46	1.61
1431640--1431672	17	1.9	17	100	0	66	21	48	6	24	1.72
1435189--1435213	1	25.0	1	100	0	50	0	100	0	0	0.00
1440913--1440963	2	25.5	2	95	0	93	50	0	49	0	1.00
1492222--1492594	185	2.0	184	98	1	730	34	12	18	34	1.88
1502854--1502906	16	3.3	16	81	0	61	1	35	24	37	1.67
1502867--1502905	20	1.9	20	94	0	69	0	33	25	41	1.56
1503619--1503657	20	1.9	20	94	0	69	41	15	12	30	1.85
1503893--1503968	39	1.9	40	86	2	109	30	18	13	38	1.89
1504665--1504728	20	3.2	20	71	4	67	37	7	20	34	1.81
1514735--1514766	1	32.0	1	93	0	55	0	3	96	0	0.20
1538575--1538608	17	2.0	17	94	0	59	20	5	26	47	1.73
1541778--1541846	21	3.3	21	78	8	68	33	13	13	40	1.82
1544659--1544692	15	2.3	15	100	0	68	17	5	5	70	1.28
1547583--1547766	4	47.0	4	92	4	313	49	1	24	25	1.57
1555881--1556370	165	3.0	162	82	6	554	32	18	16	31	1.94
1556911--1556935	12	2.1	12	100	0	50	60	0	8	32	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1562414--1562717	162	1.9	162	85	0	428	23	18	17	40	1.91
1570790--1570825	16	2.2	16	95	0	63	44	13	13	27	1.82
1577953--1578010	21	2.8	21	86	0	71	20	29	22	27	1.99
1577953--1578018	21	3.1	21	84	0	60	19	30	22	27	1.98
1591193--1591227	16	2.2	16	94	0	61	45	20	11	22	1.82
1591373--1591417	18	2.5	18	92	7	74	44	15	13	26	1.83
1591919--1591944	12	2.2	12	100	0	52	15	15	7	61	1.55
1597935--1597982	25	1.9	25	83	8	62	41	10	12	35	1.77
1611473--1611523	12	4.5	11	75	18	50	25	5	0	68	1.12
1611491--1611562	3	24.0	3	75	0	54	36	2	0	61	1.11

Tables:   1   2   3   4   5

The End!