oyster.v9_M.fa.s12.2.7.7.80.10.50.500.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold198
Parameters: 2 7 7 80 10 50 500
Length:  1589021

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1317763--1317812	4	12.5	4	91	0	64	34	26	40	0	1.56
1317770--1317825	12	4.7	12	88	0	85	39	25	35	0	1.56
1317774--1317825	4	13.0	4	91	0	59	40	25	34	0	1.56
1320332--1320389	29	2.0	28	87	9	82	60	12	12	15	1.59
1329940--1330280	159	2.1	160	89	3	526	37	20	13	27	1.91
1331676--1331705	16	1.9	16	93	6	53	56	16	13	13	1.67
1339617--1339664	22	2.2	22	96	0	87	39	18	16	25	1.91
1340132--1340181	9	5.2	9	80	9	55	54	10	2	34	1.45
1340911--1340948	19	2.0	19	100	0	76	42	10	26	21	1.85
1353149--1353761	53	12.1	53	79	9	552	21	17	22	38	1.93
1353623--1353761	47	3.0	47	79	10	178	21	18	20	38	1.93
1353822--1353938	20	5.8	20	95	0	216	31	29	9	29	1.88
1363057--1363082	1	26.0	1	100	0	52	0	100	0	0	0.00
1363290--1363755	167	2.8	166	91	0	770	37	21	17	24	1.94
1364645--1364701	28	2.0	28	89	0	87	28	40	22	8	1.84
1391568--1392002	28	15.5	28	92	1	701	24	11	26	37	1.90
1393270--1393340	23	3.1	23	92	6	117	38	14	4	43	1.64
1397143--1397181	2	19.5	2	100	0	78	0	48	0	51	1.00
1398726--1398768	15	2.9	15	79	3	52	41	13	16	27	1.86
1399380--1399424	2	22.5	2	88	0	63	53	2	44	0	1.13
1402768--1402823	25	2.2	25	100	0	112	41	19	7	32	1.79
1409629--1409680	2	26.0	2	100	0	104	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1411542--1411753	26	8.2	26	80	10	204	30	32	22	14	1.93
1420173--1420283	15	7.4	15	93	0	177	36	40	15	8	1.77
1420669--1420735	33	2.0	33	88	0	98	49	35	10	4	1.57
1420693--1420778	21	4.1	21	75	3	75	48	32	10	8	1.67
1422023--1422392	30	12.3	30	85	5	435	39	29	14	16	1.89
1422114--1422224	15	7.4	15	62	22	54	38	29	16	15	1.89
1422309--1422389	15	5.4	15	63	16	51	40	32	13	13	1.84
1423606--1424575	18	53.7	18	69	8	531	44	37	7	11	1.68
1423770--1424563	72	11.0	73	83	6	832	44	37	7	9	1.66
1423902--1424563	108	6.1	107	87	3	787	45	38	7	8	1.64
1423978--1424563	36	16.3	36	89	2	854	45	38	6	8	1.61
1426670--1426711	15	2.8	15	100	0	84	26	11	21	40	1.88
1431578--1431628	2	25.5	2	100	0	102	0	50	0	49	1.00
1432596--1432635	21	1.9	21	89	0	62	40	15	17	27	1.89
1432759--1432798	21	1.9	21	94	0	71	25	12	17	45	1.83
1433429--1433512	21	4.0	21	95	0	141	35	14	19	30	1.91
1434414--1434446	2	16.5	2	100	0	66	0	51	0	48	1.00
1435414--1435453	21	1.9	21	89	0	62	40	15	17	27	1.89
1435577--1435616	21	1.9	21	94	0	71	25	12	17	45	1.83
1436243--1436514	21	12.9	21	81	3	287	36	14	19	29	1.92
1436594--1436673	42	1.9	42	86	0	115	30	16	15	38	1.89
1436594--1436676	21	4.0	21	80	0	103	28	15	14	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1440269--1440329	32	1.9	32	82	0	77	37	16	13	32	1.87
1441741--1441819	30	2.6	30	79	4	86	29	3	24	43	1.72
1442403--1442498	32	3.0	32	75	7	104	32	6	26	35	1.81
1442565--1442638	33	2.2	33	83	4	87	27	8	35	29	1.85
1442738--1443078	174	2.0	174	86	3	481	32	11	22	34	1.90
1444049--1448200	51	81.7	51	86	2	5340	21	16	27	35	1.94
1446418--1446499	27	3.2	26	66	16	71	19	21	29	29	1.98
1446363--1447615	24	49.3	26	61	18	164	22	16	26	33	1.95
1447686--1447767	27	3.2	26	62	10	60	19	15	35	29	1.93
1448980--1449046	33	2.0	33	94	0	116	28	13	31	26	1.94
1450790--1450826	13	2.8	13	91	4	56	0	5	5	89	0.60
1463393--1463429	12	3.1	12	85	14	58	32	24	43	0	1.55
1471449--1471556	46	2.3	46	80	0	126	37	20	13	28	1.91
1472824--1473000	95	1.9	96	87	1	266	33	16	16	32	1.92
1484762--1484852	21	4.3	21	88	0	146	17	18	26	37	1.93
1484762--1484873	42	2.7	42	87	0	152	17	19	28	33	1.95
1484818--1484907	21	4.2	21	84	2	99	21	20	33	25	1.97
1487360--1487466	21	5.1	21	83	0	133	17	20	28	33	1.96
1487462--1487506	11	4.1	11	94	0	81	17	20	44	17	1.87
1507900--1507950	21	2.4	21	90	6	77	13	15	39	31	1.87
1508954--1509009	11	5.3	11	82	8	71	10	21	30	37	1.87
1508951--1509009	21	2.8	21	97	0	109	10	20	32	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1508951--1509005	10	5.3	10	82	8	65	9	20	34	36	1.84
1513894--1513952	21	2.8	21	85	10	84	10	22	30	37	1.87
1513894--1513943	11	4.8	10	79	18	57	10	22	34	34	1.87
1517841--1517889	17	2.8	18	79	17	66	40	8	2	48	1.44
1521528--1521570	17	2.5	16	78	14	50	72	0	2	25	0.97
1534416--1534445	14	2.1	14	93	0	51	30	10	23	36	1.87
1535322--1535365	18	2.5	18	85	3	63	43	13	13	29	1.83
1539233--1539360	63	2.0	63	98	0	247	44	16	20	18	1.87
1539515--1539543	13	2.1	14	93	6	51	48	0	13	37	1.43
1544922--1544960	19	2.1	19	95	0	69	33	28	10	28	1.90
1545406--1545450	2	22.5	2	100	0	90	0	51	0	48	1.00
1549948--1550009	32	1.9	33	90	3	99	40	11	4	43	1.62
1550569--1550598	11	2.7	11	100	0	60	36	0	26	36	1.57
1556054--1556119	15	4.4	15	71	17	57	33	7	12	46	1.69
1556253--1556305	20	2.6	20	80	16	65	41	7	9	41	1.66
1558223--1558250	2	14.0	2	100	0	56	50	0	0	50	1.00
1559328--1559353	2	13.0	2	100	0	52	50	0	0	50	1.00
1560944--1561134	21	9.1	21	74	7	147	36	22	16	25	1.94
1560950--1561105	84	1.9	84	85	5	217	35	22	16	25	1.95
1562000--1562153	42	3.7	42	77	8	127	27	16	23	33	1.96
1562032--1562158	21	6.0	21	82	3	132	25	18	22	33	1.97
1562127--1562167	21	2.0	21	85	0	55	24	14	24	36	1.93

Tables:   1   2   3   4   5

The End!