Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: scaffold1301 Parameters: 2 7 7 80 10 50 500 Length: 1559340

Tables:   1   2   3   4   

This is table  2  of  4  ( 397 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
396878--396969
45
2.1
44
95
2
166
35
21
17
25
1.95
409802--409877
40
1.9
39
89
5
118
25
15
11
47
1.80
409813--409893
40
2.0
40
82
0
99
22
16
12
49
1.78
419078--419437
170
2.1
175
87
7
518
35
17
15
31
1.91
430244--430277
2
17.0
2
100
0
68
0
50
0
50
1.00
431973--432011
2
19.5
2
100
0
78
0
51
0
48
1.00
432119--432161
2
21.5
2
100
0
86
0
48
0
51
1.00
432047--432252
98
2.1
94
95
3
367
16
39
2
41
1.62
432192--432252
2
31.0
2
86
3
88
3
49
1
45
1.28
436494--436531
2
19.0
2
100
0
76
50
0
50
0
1.00
439738--439793
21
2.7
21
88
5
78
21
17
19
41
1.91
439885--440044
21
7.7
21
81
1
178
39
18
15
26
1.90
440075--440145
21
3.4
21
84
0
88
29
12
16
40
1.86
445087--445132
8
6.4
7
77
22
51
30
13
39
17
1.87
445083--445131
22
2.2
22
92
0
89
30
14
38
16
1.88
445091--445138
22
2.2
22
88
7
71
31
14
39
14
1.86
447765--448561
166
4.8
165
86
2
1058
29
17
14
38
1.89
447765--448561
334
2.4
333
86
4
1154
29
17
14
38
1.89
449349--449412
2
32.0
2
100
0
128
0
50
0
50
1.00
455459--455723
145
1.9
134
90
8
422
28
18
15
37
1.91
457148--457185
17
2.2
17
86
9
51
50
10
18
21
1.76
460845--461054
34
6.2
34
77
9
115
32
9
30
28
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
460891--461810
34
27.4
34
82
5
1005
30
8
29
31
1.86
461247--461301
17
3.3
17
70
14
51
32
7
29
30
1.84
460891--461810
67
13.7
67
87
2
1168
30
8
29
31
1.86
461779--461833
25
2.2
25
86
0
74
30
10
27
30
1.91
461745--461867
59
2.1
59
86
3
167
34
10
26
28
1.90
462222--462252
1
31.0
1
100
0
62
0
0
0
100
0.00
465683--465714
11
2.9
11
100
0
64
15
18
37
28
1.92
470356--470598
34
7.1
34
76
6
179
31
8
31
28
1.87
470407--470598
102
1.9
102
85
0
267
32
9
30
27
1.88
470356--470598
68
3.6
68
74
8
208
31
8
31
28
1.87
470580--470619
21
1.9
21
90
10
64
27
10
25
37
1.88
470546--470653
55
2.0
55
92
0
180
27
8
29
34
1.86
470601--471343
34
22.0
34
84
3
728
29
9
29
31
1.89
470525--470687
89
1.8
89
93
2
283
28
7
30
33
1.85
470630--470687
17
3.4
17
67
9
55
27
6
31
34
1.83
470470--471264
136
6.0
126
75
11
423
29
9
29
31
1.88
470836--470891
17
3.3
17
68
9
51
25
5
32
37
1.78
471002--471057
17
3.3
17
70
9
60
26
5
32
35
1.79
471223--471278
17
3.3
17
67
18
53
28
7
30
33
1.84
476017--476076
11
5.4
11
80
9
50
35
23
28
13
1.92
476013--476076
33
1.9
34
83
3
85
35
21
29
12
1.91
525385--525424
2
20.0
2
100
0
80
50
0
50
0
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
528540--528578
2
20.0
2
89
5
62
0
48
0
51
1.00
533407--533442
17
2.1
17
100
0
72
41
11
5
41
1.64
538964--539007
22
2.0
22
95
0
79
29
27
9
34
1.87
541433--541851
146
2.9
146
86
2
540
28
20
20
30
1.98
547225--547260
2
18.0
2
94
0
63
2
47
0
50
1.15
549127--549177
2
26.0
2
96
4
95
49
0
50
0
1.00
552211--552289
32
2.4
32
81
10
97
32
17
20
29
1.95
552313--553804
65
22.6
65
75
9
1115
24
20
20
34
1.97
552907--553059
76
2.0
76
97
0
288
22
18
24
35
1.96
552313--553769
270
5.5
265
77
11
1095
24
20
20
34
1.97
552983--553804
131
6.3
129
74
11
710
24
20
20
34
1.96
553227--553805
205
2.9
194
80
8
565
24
21
20
33
1.97
553841--553995
65
2.4
65
81
7
172
32
21
16
28
1.96
559908--559971
31
2.1
31
100
0
128
28
15
18
37
1.92
560880--560946
31
2.2
31
97
2
127
14
32
8
43
1.77
561126--561163
16
2.4
16
95
0
67
36
21
42
0
1.53
564500--564536
2
19.0
2
94
5
67
48
0
51
0
1.00
564503--564536
17
2.0
17
100
0
68
47
0
52
0
1.00
570550--571374
161
5.1
161
88
3
1094
29
14
20
35
1.92
570550--571358
323
2.5
322
88
4
1136
30
14
20
34
1.92
572456--573232
166
4.7
166
93
0
1187
33
15
23
27
1.95
579591--579648
25
2.3
25
93
3
98
31
10
12
46
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
591372--591559
94
2.0
91
86
3
259
35
12
13
38
1.83
603435--603548
55
2.1
55
98
0
219
31
23
12
32
1.92
606434--606504
27
2.7
26
86
2
88
33
18
9
38
1.84
614953--615006
21
2.6
19
78
16
63
7
14
25
51
1.68
622496--622531
3
12.0
3
100
0
72
33
33
0
33
1.58
622623--622667
1
45.0
1
90
0
72
4
0
95
0
0.26
623138--623180
2
21.5
2
100
0
86
0
51
0
48
1.00
624073--624107
18
1.9
18
100
0
70
22
22
31
22
1.98
638436--638477
11
3.8
11
84
12
59
42
28
16
11
1.84
644954--644987
11
3.1
11
82
0
50
50
0
20
29
1.49
647161--647203
2
21.5
2
100
0
86
48
0
51
0
1.00
648238--648301
2
32.0
2
100
0
128
50
0
50
0
1.00
651725--651765
2
20.5
2
94
0
73
2
48
0
48
1.14
658773--658838
2
33.0
2
93
0
114
0
46
0
53
1.00
660269--661007
192
3.9
191
88
4
897
18
24
16
40
1.90
660344--661009
96
6.9
96
91
2
1000
18
24
16
40
1.90
670730--671125
34
11.6
34
84
2
510
39
17
25
16
1.91
685199--685255
21
2.8
21
78
2
62
38
12
15
33
1.85
685534--685570
17
2.1
18
95
5
67
27
10
18
43
1.83
685553--685641
21
4.2
21
74
7
65
37
15
8
38
1.79
685748--685843
21
4.6
21
86
0
129
34
17
13
34
1.89
685754--685863
42
2.6
42
85
2
123
34
16
15
33
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
685783--685874
21
4.4
21
83
5
82
35
16
15
32
1.90
694411--694675
40
6.7
40
89
2
408
32
18
20
29
1.96
699693--699719
14
1.9
14
100
0
54
51
22
25
0
1.48
705617--705675
15
3.9
15
78
12
68
13
8
28
49
1.71
705610--705685
30
2.5
30
80
4
82
18
7
27
46
1.77
743847--743884
17
2.2
17
100
0
76
47
26
5
21
1.71
745392--745715
163
2.1
155
80
8
350
25
24
16
33
1.96
746715--746750
15
2.5
15
90
4
56
83
0
0
16
0.65
751201--751238
13
2.9
13
92
0
67
44
5
23
26
1.74
768409--768433
2
12.5
2
100
0
50
52
0
0
48
1.00
778438--778474
18
2.1
18
100
0
74
48
18
5
27
1.70
786071--786116
16
2.9
16
73
0
56
8
39
13
39
1.75
786192--786237
23
2.0
23
86
4
65
43
15
8
32
1.77
787663--787707
19
2.3
20
88
3
65
8
33
31
26
1.87
789188--789234
2
23.5
2
100
0
94
51
0
48
0
1.00
789571--789619
2
24.5
2
100
0
98
0
48
0
51
1.00
792548--792604
2
28.5
2
100
0
114
50
0
49
0
1.00
792941--792989
2
24.5
2
100
0
98
0
48
0
51
1.00
794042--794086
21
2.1
21
87
0
63
37
15
26
20
1.92
799559--799637
22
3.5
22
78
13
79
31
18
31
17
1.95
799911--799982
21
3.4
21
80
5
92
38
16
25
19
1.92
806017--806058
22
1.9
22
85
9
59
28
4
28
38
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
806302--806336
16
2.1
16
94
5
61
31
11
5
51
1.61
807644--807705
16
3.9
16
78
0
52
3
30
37
29
1.73
818741--818795
15
3.9
15
79
13
53
49
14
0
36
1.44
825012--825041
15
2.0
15
100
0
60
13
26
33
26
1.93
838084--838118
17
2.0
18
94
5
63
8
11
17
62
1.52
838758--838787
2
15.0
2
92
0
51
0
46
0
53
1.00
861610--861654
2
23.0
2
95
4
83
0
51
0
48
1.00
866125--866163
16
2.4
16
91
0
60
38
48
5
7
1.54
891721--891795
36
2.1
36
100
0
150
29
13
22
34
1.92
892585--892681
44
2.2
44
83
0
113
25
26
14
32
1.94

Tables:   1   2   3   4