Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold1301
Parameters: 2 7 7 80 10 50 500
Length:  1559340

Tables:   1   2   3   4   

This is table  4  of  4  ( 397 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1405599--1405677
32
2.4
32
93
2
140
27
29
17
25
1.98
1408102--1408135
17
2.0
17
88
0
50
35
11
32
20
1.89
1410269--1410379
55
2.0
55
84
6
145
32
16
27
24
1.96
1410342--1410432
32
2.8
32
88
5
103
24
19
26
29
1.98
1410370--1410432
32
2.0
32
100
0
126
25
19
26
28
1.98
1414273--1414324
2
26.0
2
100
0
104
50
0
50
0
1.00
1414326--1414359
2
17.0
2
100
0
68
0
0
50
50
1.00
1415870--1415925
27
2.1
27
100
0
112
39
10
12
37
1.78
1417975--1418442
234
2.0
233
99
0
927
33
18
11
36
1.86
1429179--1429208
15
2.1
14
93
6
51
90
0
0
10
0.47
1443496--1443544
21
2.3
21
96
0
89
24
61
4
10
1.45
1447431--1447486
28
2.0
28
100
0
112
28
10
14
46
1.78
1455872--1455898
13
2.1
13
100
0
54
40
14
14
29
1.86
1465629--1465717
2
44.5
2
100
0
178
49
0
50
0
1.00
1466119--1466155
17
2.2
17
95
0
65
43
13
5
37
1.67
1469492--1469609
54
2.2
54
87
0
164
16
19
36
27
1.94
1469577--1469644
23
3.0
23
80
4
75
11
19
38
30
1.87
1472504--1472555
21
2.5
21
81
6
70
48
32
13
5
1.66
1472571--1472600
15
2.0
15
93
0
51
70
13
13
3
1.30
1482708--1482747
20
2.0
21
85
14
57
52
17
17
12
1.74
1515346--1515428
30
2.8
30
87
5
123
46
6
7
39
1.56
1515561--1515630
15
4.7
15
77
7
70
35
7
12
44
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1524574--1524604
2
15.5
2
100
0
62
48
0
51
0
1.00
1524883--1524915
12
2.8
12
95
4
59
0
30
27
42
1.56
1525114--1526457
166
8.0
166
90
2
1969
33
14
25
26
1.95
1525114--1526457
335
4.0
332
88
3
1971
33
14
25
26
1.95
1527758--1528016
131
2.0
131
100
0
518
36
14
11
37
1.83
1532852--1532884
16
2.1
16
88
11
50
0
21
30
48
1.50
1533043--1534400
166
8.2
166
83
4
1685
34
14
23
27
1.93
1533043--1534440
331
4.2
331
83
4
1700
34
14
23
27
1.94
1534040--1534349
155
2.0
156
89
1
480
33
15
23
27
1.94
1540831--1541837
165
6.0
167
91
3
1553
27
25
14
32
1.95
1540831--1541871
337
3.1
334
90
3
1614
27
24
15
32
1.95
1542033--1542065
12
2.8
12
95
4
59
36
27
36
0
1.57
1542198--1542227
12
2.5
12
94
0
51
36
26
13
23
1.92
1547677--1547745
34
2.0
34
100
0
138
47
11
5
34
1.64
1548524--1548729
40
5.2
40
91
0
331
35
14
16
33
1.89

Tables:   1   2   3   4

The End!