oyster.v9_M.fa.s15.2.7.7.80.10.50.500.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold591
Parameters: 2 7 7 80 10 50 500
Length:  1432801

Tables:   1   2   3   4   

This is table  2  of  4  ( 480 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353167--353204	20	1.9	20	94	0	67	39	5	13	42	1.66
353147--353309	50	3.3	48	76	6	146	41	3	11	43	1.57
353095--353271	15	11.3	15	67	20	78	38	5	10	45	1.61
353245--353283	20	1.9	20	89	0	60	38	0	12	48	1.42
353178--353314	65	2.1	65	82	8	163	41	2	11	43	1.56
353413--353464	15	3.6	14	79	10	52	51	11	1	34	1.49
353894--353926	16	2.1	16	94	0	57	30	21	21	27	1.98
355373--355401	2	14.5	2	100	0	58	51	48	0	0	1.00
356979--357019	21	2.0	21	85	0	55	39	19	26	14	1.90
357010--357053	21	2.1	21	91	0	70	36	29	18	15	1.92
357127--357169	2	21.5	2	100	0	86	51	48	0	0	1.00
360921--360965	11	4.1	11	100	0	90	35	8	11	44	1.71
362143--362196	2	27.5	2	96	3	101	50	0	50	0	1.00
362673--362707	4	8.8	4	100	0	70	51	0	25	22	1.48
367496--367549	28	1.9	28	88	0	81	48	14	24	12	1.79
368531--368619	21	4.3	21	94	1	137	31	21	4	42	1.73
368540--368617	21	3.8	21	96	1	140	29	23	5	42	1.75
368617--368756	21	6.4	22	73	12	83	42	7	17	32	1.77
368594--368683	43	2.1	42	83	6	110	37	13	11	37	1.80
368617--368759	42	3.3	42	74	11	126	42	6	18	32	1.77
369174--369207	17	2.0	17	94	0	59	26	44	5	23	1.76
369445--369513	21	3.3	21	83	0	93	36	17	7	39	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369519--369571	21	2.5	21	96	0	97	30	13	15	41	1.85
369518--369596	21	3.8	22	86	8	87	34	8	15	41	1.78
369598--369671	21	3.6	21	88	3	123	31	22	4	41	1.72
369669--369721	20	2.6	20	90	3	88	43	5	18	32	1.74
372915--372961	23	2.0	23	91	0	76	42	10	10	36	1.74
377397--377864	158	2.9	160	82	11	446	33	12	24	29	1.92
377570--377887	158	2.0	158	98	1	620	34	10	23	31	1.89
383277--383392	8	16.0	7	68	21	53	31	16	41	10	1.82
383278--383319	22	1.9	22	85	0	57	30	14	42	11	1.81
383300--383357	30	1.9	30	89	0	89	32	17	41	8	1.80
384486--384520	14	2.5	14	95	0	61	11	42	11	34	1.77
392556--392582	13	2.1	13	100	0	54	40	22	14	22	1.90
392975--393002	14	2.0	14	100	0	56	57	0	14	28	1.38
396430--396462	11	2.8	12	86	4	50	51	9	6	33	1.58
422610--422647	20	1.9	20	100	0	76	26	10	15	47	1.78
423177--423778	166	3.7	165	85	6	803	38	15	16	29	1.89
423447--423759	157	2.0	156	89	3	477	37	15	16	30	1.90
423195--423796	323	1.8	325	84	4	825	38	15	16	29	1.89
430713--430902	98	2.0	93	93	4	317	32	14	19	33	1.91
432607--433036	172	2.6	160	86	8	635	36	13	19	30	1.90
437696--437738	21	2.0	21	100	0	86	41	13	13	30	1.84
439454--439510	2	28.5	2	100	0	114	50	0	49	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
439972--440117	9	16.2	9	77	5	62	1	50	15	33	1.52
439977--440032	21	2.7	21	100	0	112	3	53	8	33	1.49
440022--440116	6	15.8	6	89	0	64	0	48	17	33	1.48
440034--440095	3	20.7	3	96	0	88	0	40	25	33	1.56
457020--457119	49	2.0	49	98	0	191	48	11	8	33	1.68
473026--473059	2	17.0	2	100	0	68	50	0	50	0	1.00
475745--475793	24	2.0	24	84	0	62	42	10	10	36	1.73
476389--476415	2	13.5	2	100	0	54	51	0	48	0	1.00
483257--483604	172	2.0	172	98	0	678	32	13	15	38	1.87
492993--493047	20	2.8	20	82	0	65	41	25	32	0	1.56
493343--493424	41	2.0	41	95	0	146	35	13	14	36	1.86
497322--497363	22	1.9	22	100	0	84	38	14	14	33	1.86
497324--497372	22	2.3	22	89	3	73	38	16	14	30	1.88
498204--498280	20	3.9	20	91	0	127	23	50	25	0	1.49
498216--498248	16	2.1	16	100	0	66	18	51	30	0	1.46
500553--500620	32	2.1	32	97	0	127	29	17	17	35	1.93
506646--506678	2	16.5	2	100	0	66	51	0	48	0	1.00
513379--513409	15	2.1	15	100	0	62	48	19	6	25	1.72
515934--516068	31	4.6	31	80	14	169	28	39	18	14	1.89
515920--516040	54	2.2	54	94	0	215	28	38	19	14	1.90
516268--516298	16	1.9	16	100	0	62	41	12	0	45	1.42
517611--517635	2	12.5	2	100	0	50	0	52	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
521082--521106	1	25.0	1	100	0	50	0	100	0	0	0.00
531693--532341	146	4.5	146	86	5	860	29	22	18	29	1.97
532349--532383	12	2.9	12	100	0	70	34	25	40	0	1.56
533844--533911	31	2.2	31	100	0	136	16	32	8	42	1.79
537086--537422	168	2.0	168	98	0	656	31	19	20	28	1.97
538455--538771	142	2.2	142	78	7	306	34	22	14	29	1.93
548503--548551	23	2.1	23	96	0	89	18	6	38	36	1.76
550170--550258	19	4.6	19	85	1	124	28	26	25	19	1.99
551537--551903	180	2.0	180	90	2	576	37	16	15	30	1.90
559630--559669	11	3.7	11	90	3	55	25	30	10	35	1.88
563409--563440	15	2.1	15	100	0	64	37	12	18	31	1.88
574652--574698	20	2.4	20	78	7	51	36	10	0	53	1.36
575400--575440	12	3.4	12	86	0	55	34	24	39	2	1.69
575400--575431	16	2.0	16	100	0	64	37	25	37	0	1.56
576577--576744	89	1.9	89	92	2	284	24	15	29	30	1.96
579782--580416	316	2.0	316	98	0	1234	34	16	20	29	1.94
584936--584963	14	2.0	14	100	0	56	64	7	0	28	1.20
590708--590745	2	19.0	2	100	0	76	50	0	50	0	1.00
598155--598210	28	2.0	28	100	0	112	21	25	14	39	1.91
605292--605340	2	24.5	2	100	0	98	0	51	0	48	1.00
609637--609692	29	1.9	29	85	0	76	44	7	8	39	1.63
629877--629906	2	15.0	2	100	0	60	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
632152--632199	2	24.0	2	100	0	96	0	50	0	50	1.00
634625--634653	4	7.2	4	100	0	58	72	0	0	27	0.85
635120--635146	13	2.1	13	100	0	54	44	7	22	25	1.79
635618--635655	2	19.0	2	100	0	76	50	0	50	0	1.00
644172--644294	64	2.0	61	89	9	189	30	12	13	43	1.81
651556--651600	2	22.5	2	100	0	90	0	51	0	48	1.00
651872--652374	44	11.4	44	96	0	927	33	24	18	23	1.96
652694--652746	11	4.8	11	80	0	70	50	24	11	13	1.73
652712--652762	22	2.3	22	90	6	77	41	29	17	11	1.85
660327--660366	19	2.1	19	100	0	80	50	15	5	30	1.65
681738--681771	17	2.0	17	100	0	68	29	17	23	29	1.97
699101--699176	12	5.8	12	72	17	62	39	31	14	14	1.86
699103--699180	27	2.9	27	94	0	129	39	29	15	15	1.88
699130--699187	27	2.1	27	83	0	71	43	29	15	12	1.83
700496--700616	21	5.9	21	67	16	74	49	25	15	9	1.74
700504--700740	42	5.8	42	69	17	124	50	27	14	8	1.70
700551--700675	39	3.1	38	71	23	105	52	27	13	7	1.67
700506--700715	81	2.6	80	84	8	241	50	26	14	7	1.69
700647--700706	21	2.9	20	74	16	59	50	28	15	6	1.69
700506--700740	81	2.9	80	79	11	214	50	27	14	8	1.70
700849--700984	36	4.0	36	80	16	182	54	30	7	7	1.55
700891--700936	15	3.3	15	70	17	53	52	28	6	13	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
700882--700945	27	2.4	27	100	0	128	53	29	7	9	1.61
700849--701035	63	3.1	62	89	6	276	55	31	7	6	1.53
700916--700998	21	4.2	20	71	20	68	55	30	7	7	1.54
700964--701005	21	2.0	21	100	0	84	61	28	9	0	1.27
700965--701032	21	3.2	21	82	14	77	60	30	5	2	1.35
705807--705898	21	4.4	21	72	5	78	41	16	22	19	1.90
713629--713673	16	2.8	16	90	9	74	11	20	20	48	1.79
731474--731691	64	3.4	64	94	1	375	40	21	15	22	1.90
733170--733335	34	4.6	38	78	13	181	34	26	7	31	1.85
733218--733372	34	4.4	34	78	13	163	36	25	8	30	1.85

Tables:   1   2   3   4