Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: scaffold591 Parameters: 2 7 7 80 10 50 500 Length: 1432801

Tables:   1   2   3   4   

This is table  4  of  4  ( 480 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1140582--1140952
114
3.3
114
94
0
629
23
18
20
38
1.93
1140786--1140842
23
2.5
23
94
0
96
21
19
15
43
1.87
1140913--1140971
23
2.6
23
86
0
73
23
10
13
52
1.71
1141288--1141335
2
24.5
2
91
4
80
47
0
0
52
1.00
1145099--1145180
42
1.9
44
85
5
114
21
14
9
53
1.70
1145139--1145197
17
3.6
17
77
6
52
22
13
11
52
1.72
1145272--1145317
18
2.6
18
82
0
56
23
17
8
50
1.74
1147265--1147692
161
2.6
161
91
2
669
31
17
16
34
1.92
1147271--1147698
60
7.8
56
72
16
283
31
17
16
34
1.92
1147265--1147794
161
3.3
159
85
5
604
29
17
16
35
1.92
1148623--1148706
8
10.5
8
75
5
71
22
17
25
34
1.96
1148623--1148769
16
9.2
16
73
0
114
25
17
24
32
1.97
1148623--1148705
24
3.5
24
80
3
96
22
16
25
34
1.95
1150300--1150355
2
28.0
2
100
0
112
50
0
50
0
1.00
1153482--1153507
13
2.0
13
100
0
52
30
15
23
30
1.95
1158250--1158284
17
2.1
17
88
0
52
42
14
8
34
1.76
1158794--1158846
16
3.3
16
81
0
61
22
22
35
18
1.95
1161231--1161274
1
44.0
1
90
0
70
0
0
95
4
0.27
1161231--1161274
21
2.1
21
100
0
88
0
0
95
4
0.27
1161576--1161612
17
2.1
18
90
5
58
78
18
0
2
0.87
1164153--1164421
33
8.2
33
75
6
188
35
24
19
20
1.96
1164236--1164421
99
1.9
99
82
2
239
37
22
20
19
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1164367--1164589
51
4.1
51
73
16
185
36
22
22
18
1.95
1164400--1164439
18
2.2
18
95
0
71
35
20
30
15
1.93
1164332--1164505
84
2.1
84
86
4
244
36
22
22
18
1.95
1164418--1164538
33
3.7
33
84
4
163
37
20
22
19
1.95
1164334--1164618
117
2.4
118
91
3
461
36
22
21
19
1.95
1164451--1164611
84
1.9
84
89
2
252
37
22
20
19
1.94
1164517--1164556
18
2.2
18
95
0
71
37
20
25
17
1.94
1164532--1164615
33
2.5
33
88
0
132
36
25
20
17
1.94
1165036--1165388
54
6.5
54
94
0
609
33
21
19
25
1.96
1173064--1173150
18
4.8
18
88
0
102
26
14
21
36
1.93
1173171--1173205
18
1.9
18
88
0
52
28
14
20
37
1.91
1173304--1173457
17
8.9
17
77
2
119
24
14
23
37
1.93
1173304--1173422
52
2.3
52
81
5
150
24
15
23
36
1.94
1173327--1173457
69
1.9
69
91
0
217
24
12
23
38
1.90
1173332--1173457
52
2.4
52
81
2
137
24
11
24
38
1.89
1173852--1174035
32
5.9
32
91
2
277
20
19
19
40
1.91
1174069--1174184
32
3.6
32
98
0
223
19
16
23
40
1.91
1174099--1174155
17
3.5
17
66
9
55
15
15
24
43
1.86
1174037--1174207
64
2.7
64
84
4
236
19
16
22
40
1.91
1178177--1178223
2
23.5
2
100
0
94
0
51
0
48
1.00
1180116--1180141
1
26.0
1
100
0
52
0
0
0
100
0.00
1187983--1188038
4
14.5
4
81
7
53
0
50
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1187982--1188038
23
2.6
22
89
8
89
0
49
0
50
1.00
1189850--1189917
2
34.0
2
100
0
136
0
50
0
50
1.00
1202444--1202476
11
2.8
12
86
4
50
78
21
0
0
0.75
1211541--1211570
15
2.0
15
93
0
51
30
33
26
10
1.89
1212194--1212362
65
2.6
65
98
0
320
32
17
28
21
1.96
1216325--1216359
17
2.1
17
88
0
52
34
14
22
28
1.93
1216916--1216948
16
2.1
16
100
0
66
36
12
24
27
1.91
1253664--1253707
2
22.0
2
95
0
79
47
0
52
0
1.00
1255919--1256103
21
9.0
21
81
5
209
30
21
22
25
1.99
1255934--1255968
17
2.1
17
88
0
52
37
20
25
17
1.94
1257610--1257751
25
5.7
25
87
3
187
19
33
15
30
1.93
1257610--1257770
25
6.4
25
84
2
164
21
31
14
32
1.94
1257610--1257770
50
3.2
50
84
1
198
21
31
14
32
1.94
1258423--1258526
43
2.4
43
93
0
181
36
24
17
22
1.94
1258526--1258557
12
2.8
12
95
4
57
6
0
0
93
0.34
1272206--1272924
43
16.7
43
91
2
1117
36
23
17
22
1.95
1273902--1273926
12
2.1
12
100
0
50
32
16
16
36
1.90
1273968--1274046
22
3.6
21
86
8
113
32
39
21
6
1.79
1275796--1275834
14
2.7
14
88
4
51
17
0
15
66
1.25
1275932--1276095
23
6.9
23
80
8
175
34
18
20
26
1.96
1276029--1276086
29
2.0
29
89
0
89
34
18
17
29
1.94
1280476--1280507
2
16.0
2
100
0
64
0
0
50
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1282367--1282533
90
1.9
90
97
0
316
37
13
10
37
1.80
1287298--1287353
21
2.7
21
80
0
67
50
30
10
8
1.68
1289234--1289300
23
2.9
23
82
4
91
43
20
13
22
1.87
1291573--1291606
17
2.0
17
88
0
50
58
38
2
0
1.13
1294720--1294800
40
2.1
39
95
2
144
50
8
12
27
1.69
1299242--1299316
29
2.6
29
93
0
123
32
13
18
36
1.90
1300658--1300711
27
2.0
27
100
0
108
25
18
14
40
1.89
1300995--1301039
23
1.9
23
86
4
63
0
26
6
66
1.16
1333233--1333288
2
28.0
2
100
0
112
0
50
0
50
1.00
1334234--1334259
11
2.4
11
100
0
52
15
0
7
76
0.99
1349915--1349995
27
3.0
27
92
0
135
30
25
13
29
1.94
1350485--1350529
2
22.5
2
100
0
90
0
48
0
51
1.00
1350729--1350770
21
2.0
21
95
0
75
28
35
19
16
1.93
1352749--1352793
2
23.0
2
90
4
74
2
0
51
46
1.13
1355012--1355209
37
5.4
37
80
4
222
29
16
21
32
1.95
1354996--1355800
35
22.8
35
81
10
820
29
16
20
33
1.95
1355364--1355454
43
2.1
43
87
0
128
28
16
16
38
1.90
1357464--1357538
38
2.0
38
82
10
91
40
28
4
28
1.74
1357566--1357621
19
2.9
19
76
10
60
19
35
7
37
1.79
1362052--1362098
24
2.0
24
95
0
85
34
34
14
17
1.90
1363680--1363796
28
4.2
28
78
4
101
35
23
11
29
1.89
1363680--1363801
56
2.2
56
80
4
138
34
23
11
30
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1364963--1365353
30
13.0
30
71
13
223
29
22
18
29
1.97
1365107--1365359
92
2.8
92
94
0
434
30
19
20
29
1.97
1365350--1365404
25
2.2
26
83
3
67
36
16
12
34
1.87
1365146--1365432
30
9.6
29
68
19
103
30
20
19
29
1.97
1367990--1368024
17
2.1
16
94
5
61
22
20
37
20
1.95
1369208--1369342
42
3.1
42
81
12
166
34
17
14
33
1.90
1369542--1369588
21
2.3
21
85
3
60
25
21
14
38
1.92
1369657--1369816
21
7.7
20
68
10
88
38
13
13
35
1.83
1369877--1369920
21
2.1
21
82
0
52
34
18
11
36
1.86
1370012--1370091
42
1.9
42
89
0
124
27
18
13
40
1.89
1370008--1370094
21
4.2
21
75
7
79
26
17
12
43
1.84
1370934--1371810
21
42.1
21
84
2
919
23
21
29
25
1.99
1372921--1373730
409
2.0
400
97
2
1530
29
14
21
34
1.93
1375572--1375689
61
1.9
61
96
0
218
30
21
14
33
1.93
1384461--1384493
14
2.3
14
94
5
57
9
6
12
72
1.26
1385155--1385195
21
2.0
21
90
0
64
41
12
19
26
1.87
1385369--1385430
21
3.0
21
82
0
88
32
12
14
40
1.84
1385672--1385725
21
2.6
21
84
0
81
27
18
14
38
1.90
1389650--1389723
36
2.1
36
97
0
121
56
9
10
22
1.62
1390876--1391249
30
12.4
30
78
10
336
18
12
24
44
1.84
1390992--1391231
119
2.0
121
90
4
378
17
13
26
42
1.86
1391006--1391249
89
2.7
90
87
5
339
17
14
26
42
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1391406--1391454
3
16.3
3
86
0
71
0
2
30
67
1.02
1391406--1391472
21
3.2
20
87
8
73
4
1
28
65
1.21
1391663--1391693
13
2.4
13
94
0
53
12
6
16
64
1.47
1392262--1392304
2
21.5
2
90
0
68
53
0
46
0
1.00
1393298--1393344
22
2.1
22
100
0
94
36
17
8
38
1.80
1410154--1410218
2
32.5
2
96
0
112
52
0
47
0
1.00
1412174--1412213
2
20.0
2
100
0
80
50
0
50
0
1.00
1412596--1412726
30
4.2
31
74
9
90
25
34
11
29
1.91
1422210--1422389
90
2.0
90
98
0
351
26
10
20
42
1.83
1430576--1430954
27
14.0
27
92
0
596
44
11
11
32
1.78

Tables:   1   2   3   4   

The End!