Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold501
Parameters: 2 7 7 80 10 50 500
Length:  1397941

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 512 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1350915--1351294
179
2.1
179
84
2
496
28
20
23
27
1.99
1351535--1351649
21
5.5
21
73
5
99
39
30
9
20
1.85
1351524--1351582
31
1.9
31
85
0
82
40
38
8
11
1.72
1351535--1351648
10
10.9
11
72
10
87
38
30
9
21
1.85
1351534--1351642
31
3.5
31
75
10
98
39
31
9
20
1.84
1352349--1352389
15
2.5
17
84
15
68
36
31
12
19
1.89
1352354--1352388
15
2.3
15
100
0
70
37
28
11
22
1.89
1352424--1352448
1
25.0
1
100
0
50
0
100
0
0
0.00
1352448--1352476
6
5.0
6
91
8
51
86
13
0
0
0.58
1355045--1355090
2
23.0
2
100
0
92
0
50
0
50
1.00
1356056--1356427
189
2.0
182
81
6
426
30
11
18
38
1.87
1358476--1358920
179
2.5
179
85
3
583
28
19
23
28
1.98
1359363--1359395
2
16.5
2
100
0
66
51
0
0
48
1.00
1364157--1364693
164
3.2
164
83
5
652
26
24
16
33
1.95
1365240--1366016
166
4.6
165
85
5
936
25
26
16
31
1.97
1366330--1366362
13
2.7
12
90
9
57
81
18
0
0
0.68
1366527--1366570
1
44.0
1
86
0
61
93
6
0
0
0.36
1366527--1366570
12
3.7
12
91
8
72
93
6
0
0
0.36
1366525--1366572
22
2.1
22
92
3
78
89
10
0
0
0.48
1366530--1366568
20
1.9
20
100
0
78
92
7
0
0
0.39
1366655--1366694
14
2.6
16
88
11
66
82
17
0
0
0.67
1366658--1366691
13
2.7
12
90
9
50
82
17
0
0
0.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1366655--1366695
15
2.7
15
88
0
64
82
17
0
0
0.66
1370514--1370538
13
1.9
13
100
0
50
32
0
24
44
1.54
1370548--1370576
13
2.2
13
100
0
58
48
0
0
51
1.00
1378407--1378446
15
2.7
15
88
3
55
27
15
7
50
1.70
1379744--1379800
27
2.1
27
93
0
96
17
19
31
31
1.95
1382128--1382168
8
5.1
8
82
11
57
0
0
14
85
0.60
1382128--1382165
15
2.5
16
91
8
62
0
0
13
86
0.56
1382129--1382167
18
2.2
17
90
9
60
0
0
10
89
0.48
1389941--1389997
2
28.5
2
100
0
114
49
0
50
0
1.00
1395754--1395802
2
24.5
2
91
0
71
55
2
42
0
1.11

Tables:   1   2   3   4   5

The End!