Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Sequence: scaffold1213
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1372454
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.28
Warning! 222767 characters in sequence are not A, C, G, or T
File 2 of 3
Found at i:14337 original size:276 final size:275
Alignment explanation
Indices: 13844--14395 Score: 1095
Period size: 276 Copynumber: 2.0 Consensus size: 275
13834 TCATTTTTAA
13844 TTCCCTCGGTGTACAGAAAAGTCTGATTCTGTCGACACTGCTTGATAAACACAGCACTAATGTCG
1 TTCCCTCGGTGTACAGAAAAGTCTGATTCTGTCGACACTGCTTGATAAACACAGCACTAATGTCG
13909 ACATGAAAGATATATATGTCGGTGTATTCATTTTTAATTCCCTTGGTGTACAGTATGGTCTGATT
66 ACATGAAAGATATATATGTCGGTGTATTCATTTTTAATTCCCTTGGTGTACAGTATGGTCTGATT
13974 CTGTTAAACAAGATACGGAGGGTACATGTACTTTTTGGTGAACTTTACAGTGGAAGTGCTATCTA
131 CTGTTAAACAAGATACGGAGGGTACATGTACTTTTTGGTGAACTTTACAGTGGAAGTGCTATCTA
14039 AATGCTTAGTAACACTGAAAATTTCAGTCCCCATAGAACGGAAATTCAATGTTTTCGAACGCAAT
196 AATGCTTAGTAACACTGAAAATTTCAGTCCCCATAGAACGGAAATTCAATGTTTTCGAACGCAAT
14104 ATCTATAATTCTCTT
261 ATCTATAATTCTCTT
14119 NTTCCCTCGGTGTACAGAAAAGTCTGATTCTGTCGACACTGCTTGATAAACACAGCACTAATGTC
1 -TTCCCTCGGTGTACAGAAAAGTCTGATTCTGTCGACACTGCTTGATAAACACAGCACTAATGTC
14184 GACATGAAAGATATATATGTCGGTGTATTCATTTTTAATTCCCTTGGTGTACAGTATGGTCTGAT
65 GACATGAAAGATATATATGTCGGTGTATTCATTTTTAATTCCCTTGGTGTACAGTATGGTCTGAT
14249 TCTGTTAAACAAGATACGGAGGGTACATGTACTTTTTGGTGAACTTTACAGTGGAAGTGCTATCT
130 TCTGTTAAACAAGATACGGAGGGTACATGTACTTTTTGGTGAACTTTACAGTGGAAGTGCTATCT
14314 AAATGCTTAGTAACACTGAAAATTTCAGTCCCCATAGAACGGAAATTCAATGTTTTCGAACGCAA
195 AAATGCTTAGTAACACTGAAAATTTCAGTCCCCATAGAACGGAAATTCAATGTTTTCGAACGCAA
14379 TATCTATAATTCTCTT
260 TATCTATAATTCTCTT
14395 T
1 T
14396 GTGTTAAATG
Statistics
Matches: 276, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
275 1 0.00
276 275 1.00
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.34
Consensus pattern (275 bp):
TTCCCTCGGTGTACAGAAAAGTCTGATTCTGTCGACACTGCTTGATAAACACAGCACTAATGTCG
ACATGAAAGATATATATGTCGGTGTATTCATTTTTAATTCCCTTGGTGTACAGTATGGTCTGATT
CTGTTAAACAAGATACGGAGGGTACATGTACTTTTTGGTGAACTTTACAGTGGAAGTGCTATCTA
AATGCTTAGTAACACTGAAAATTTCAGTCCCCATAGAACGGAAATTCAATGTTTTCGAACGCAAT
ATCTATAATTCTCTT
Found at i:28291 original size:16 final size:16
Alignment explanation
Indices: 28270--28302 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
28260 CGAGACGAGG
28270 CATCACCCTTATGAGA
1 CATCACCCTTATGAGA
*
28286 CATCACCTTTATGAGA
1 CATCACCCTTATGAGA
28302 C
1 C
28303 CATCTTTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.30, G:0.12, T:0.27
Consensus pattern (16 bp):
CATCACCCTTATGAGA
Found at i:28645 original size:20 final size:20
Alignment explanation
Indices: 28595--28655 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 20
28585 CACATATTAT
* *
28595 AATATCATAATATATAATAC
1 AATATCATATTAAATAATAC
*
28615 AATAT-AGTATTAAATGATAC
1 AATATCA-TATTAAATAATAC
*
28635 AATATCATATTACATAATAC
1 AATATCATATTAAATAATAC
28655 A
1 A
28656 TCATAATATT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
19 1 0.03
20 32 0.94
21 1 0.03
ACGTcount: A:0.52, C:0.10, G:0.03, T:0.34
Consensus pattern (20 bp):
AATATCATATTAAATAATAC
Found at i:28889 original size:15 final size:15
Alignment explanation
Indices: 28859--28957 Score: 58
Period size: 15 Copynumber: 6.3 Consensus size: 15
28849 ATTCAAATTG
* *
28859 TATCATATGATGCAA
1 TATCATATAATACAA
*
28874 TAAT-ATATATTACAA
1 T-ATCATATAATACAA
28889 TATCATATAATACAATTTCA
1 TATCATATAATAC-A----A
* *
28909 TATGATATAATAAAA
1 TATCATATAATACAA
28924 TATCATATAA-ACCAA
1 TATCATATAATA-CAA
* *
28939 TATTATATTATACAA
1 TATCATATAATACAA
28954 TATC
1 TATC
28958 GTATGATACG
Statistics
Matches: 64, Mismatches: 11, Indels: 18
0.69 0.12 0.19
Matches are distributed among these distances:
14 3 0.05
15 44 0.69
16 4 0.06
19 1 0.02
20 12 0.19
ACGTcount: A:0.48, C:0.11, G:0.03, T:0.37
Consensus pattern (15 bp):
TATCATATAATACAA
Found at i:28916 original size:20 final size:20
Alignment explanation
Indices: 28888--28931 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
28878 ATATATTACA
* *
28888 ATATCATATAATACAATTTC
1 ATATCATATAATAAAATATC
*
28908 ATATGATATAATAAAATATC
1 ATATCATATAATAAAATATC
28928 ATAT
1 ATAT
28932 AAACCAATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.50, C:0.09, G:0.02, T:0.39
Consensus pattern (20 bp):
ATATCATATAATAAAATATC
Found at i:30314 original size:178 final size:178
Alignment explanation
Indices: 30013--30365 Score: 413
Period size: 178 Copynumber: 2.0 Consensus size: 178
30003 CCAGCATCCG
**
30013 AAACCTATGGCTCAGACTCAGCATTCAAGCCTGTCAGGTGCATCAATATCATAAGATGCACCATC
1 AAACCTATGGCTCAGACTCAGCATTCAAGCCTGTCAGGTGCATCAATATCATAAGACACACCATC
* * * * * * * ***
30078 CAAGGAAGTTTGGTGAAGTTAGCACAAGTTATAATTAAGATATAATCATCAGAGGGCACCTGTTT
66 CAAGCAAGTTTGCTGAAGTTAGCACAAGTCATAACTAAGACATAATCATCAAAGGGCACATGCAC
* **
30143 CAAAAATTTTAACCAGCTCTTAAAACCTTAACCTCCTCCAGCATCAAA
131 CAAAAACTTTAACCAGCTCCAAAAACCTTAACCTCCTCCAGCATCAAA
* ** * *
30191 AAACCTATGGCTTAGTTTCAGCATTCAAGCCTGTCAGGTGCATCAGTATCATGAGACACACCATC
1 AAACCTATGGCTCAGACTCAGCATTCAAGCCTGTCAGGTGCATCAATATCATAAGACACACCATC
* * * * * ** *
30256 CATGCAAGTTTGCTGAAG-TATGGACCAG-CAGTTACTCAGACATTGTTATCAAAGGGCACATGC
66 CAAGCAAGTTTGCTGAAGTTA-GCACAAGTCA-TAACTAAGACATAATCATCAAAGGGCACATGC
*
30319 ACCAAAAACTTTAACCTGCTCCAAAAACCTTAACCTCCTCCAGCATC
129 ACCAAAAACTTTAACCAGCTCCAAAAACCTTAACCTCCTCCAGCATC
30366 TAAACTTTAG
Statistics
Matches: 144, Mismatches: 29, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
177 3 0.02
178 141 0.98
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (178 bp):
AAACCTATGGCTCAGACTCAGCATTCAAGCCTGTCAGGTGCATCAATATCATAAGACACACCATC
CAAGCAAGTTTGCTGAAGTTAGCACAAGTCATAACTAAGACATAATCATCAAAGGGCACATGCAC
CAAAAACTTTAACCAGCTCCAAAAACCTTAACCTCCTCCAGCATCAAA
Found at i:30344 original size:19 final size:19
Alignment explanation
Indices: 30320--30360 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
30310 GGCACATGCA
* *
30320 CCAAAAACTTTAACCTGCT
1 CCAAAAACCTTAACCTCCT
30339 CCAAAAACCTTAACCTCCT
1 CCAAAAACCTTAACCTCCT
30358 CCA
1 CCA
30361 GCATCTAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.37, C:0.39, G:0.02, T:0.22
Consensus pattern (19 bp):
CCAAAAACCTTAACCTCCT
Found at i:46607 original size:50 final size:50
Alignment explanation
Indices: 46485--46732 Score: 319
Period size: 50 Copynumber: 5.0 Consensus size: 50
46475 ACATGACAAC
* * *
46485 TTGTCATGTTGTAAATGTTT-TATTTTCACCCACCCAGTAAATTCACAA--
1 TTGTCATGTTGTAAAT-TTTGTATTTACACCCACTCAGTAATTTCACAATT
* *
46533 -AGTCATGTTGTAATTTTTGTATTTACACCCA-TCCAGTAATTTCACAATT
1 TTGTCATGTTGTAAATTTTGTATTTACACCCACT-CAGTAATTTCACAATT
*
46582 TTGTAATGTTGTAAATTTTGTATTTACACCCACTCAGTAAATTT-ACAATT
1 TTGTCATGTTGTAAATTTTGTATTTACACCCACTCAGT-AATTTCACAATT
* ** *
46632 TTGTCATATTGTAAATTTTGTATTTACAATCACTCAGTAAATTCACAATT
1 TTGTCATGTTGTAAATTTTGTATTTACACCCACTCAGTAATTTCACAATT
* *
46682 TTGTCATGTTGTAAATTTTGTATTTACATCCACTCAGTAATTTCAAAATT
1 TTGTCATGTTGTAAATTTTGTATTTACACCCACTCAGTAATTTCACAATT
46732 T
1 T
46733 ACGTGACATA
Statistics
Matches: 174, Mismatches: 18, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
46 3 0.02
47 37 0.21
49 4 0.02
50 124 0.71
51 6 0.03
ACGTcount: A:0.31, C:0.16, G:0.10, T:0.44
Consensus pattern (50 bp):
TTGTCATGTTGTAAATTTTGTATTTACACCCACTCAGTAATTTCACAATT
Found at i:47922 original size:2 final size:2
Alignment explanation
Indices: 47915--47952 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
47905 GAACCCGTTA
47915 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
47953 ATCATTACAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:52307 original size:18 final size:18
Alignment explanation
Indices: 52284--52325 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
52274 CCAACTGATG
*
52284 TATTATTACTATCACTAT
1 TATTATTAATATCACTAT
*
52302 TATTATTAATATTACTAT
1 TATTATTAATATCACTAT
52320 TATTAT
1 TATTAT
52326 CATTATTATC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.36, C:0.10, G:0.00, T:0.55
Consensus pattern (18 bp):
TATTATTAATATCACTAT
Found at i:52308 original size:6 final size:6
Alignment explanation
Indices: 52284--52343 Score: 57
Period size: 6 Copynumber: 10.0 Consensus size: 6
52274 CCAACTGATG
* * * * * *
52284 TATTAT TACTAT CACTAT TATTAT TAATAT TACTAT TATTAT CATTAT
1 TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT
*
52332 TATCAT TATTAT
1 TATTAT TATTAT
52344 AATCATTTGA
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
6 43 1.00
ACGTcount: A:0.35, C:0.10, G:0.00, T:0.55
Consensus pattern (6 bp):
TATTAT
Found at i:55413 original size:53 final size:53
Alignment explanation
Indices: 55350--55453 Score: 208
Period size: 53 Copynumber: 2.0 Consensus size: 53
55340 CCGTCAGATC
55350 TACCTTAAATTCTAAAGATATGATTTGTTAAGCTATAAACTATTATTTTATAA
1 TACCTTAAATTCTAAAGATATGATTTGTTAAGCTATAAACTATTATTTTATAA
55403 TACCTTAAATTCTAAAGATATGATTTGTTAAGCTATAAACTATTATTTTAT
1 TACCTTAAATTCTAAAGATATGATTTGTTAAGCTATAAACTATTATTTTAT
55454 GAAGGAAAAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.38, C:0.10, G:0.08, T:0.44
Consensus pattern (53 bp):
TACCTTAAATTCTAAAGATATGATTTGTTAAGCTATAAACTATTATTTTATAA
Found at i:58318 original size:2 final size:2
Alignment explanation
Indices: 58311--58376 Score: 123
Period size: 2 Copynumber: 33.0 Consensus size: 2
58301 GAACTGAAAA
58311 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
*
58353 TC TC TC TC TC TC TC TA TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC
58377 ACACCAAGGA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 62 1.00
ACGTcount: A:0.02, C:0.48, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:62076 original size:67 final size:64
Alignment explanation
Indices: 61967--62115 Score: 199
Period size: 64 Copynumber: 2.3 Consensus size: 64
61957 CACTAAATGA
* *
61967 TAAGATTTACAGTTTTTCATGGTAAATTACCGCTCGAAAGTAATAATTGTCAACTAACCGATAGA
1 TAAGATTTACCG-TTTTCAAGGTAAATTACCGCTCGAAAGTAATAA---TCAACTAACCGATAGA
62032 TGG
62 TGG
* * * *
62035 TAAGATTTACCGTTTTCAAGGTAACTTACCGCTCGAAAGTAATAATCAACTTACCGTTAGGTGG
1 TAAGATTTACCGTTTTCAAGGTAAATTACCGCTCGAAAGTAATAATCAACTAACCGATAGATGG
*
62099 TAAGATTTACCGGTTTC
1 TAAGATTTACCGTTTTC
62116 CCACAGCAAC
Statistics
Matches: 74, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
64 32 0.43
67 31 0.42
68 11 0.15
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (64 bp):
TAAGATTTACCGTTTTCAAGGTAAATTACCGCTCGAAAGTAATAATCAACTAACCGATAGATGG
Found at i:67504 original size:2 final size:2
Alignment explanation
Indices: 67497--67557 Score: 122
Period size: 2 Copynumber: 30.5 Consensus size: 2
67487 ATGCATGTAT
67497 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
67539 TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC T
67558 GTACGAGTCG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 59 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:74477 original size:200 final size:200
Alignment explanation
Indices: 74134--74543 Score: 811
Period size: 200 Copynumber: 2.0 Consensus size: 200
74124 GCGCATTACA
74134 TTCTCTCTCCCATAACAAATGATTACTCCAGCTAATGCCGCTAGGACAGGCCCCCAACGGCCGCT
1 TTCTCTCTCCCATAACAAATGATTACTCCAGCTAATGCCGCTAGGACAGGCCCCCAACGGCCGCT
74199 TAACGCTCAAACAGGGGCAGATTTCTCTGTACACAGTACTGCACCGCGCGACAAGTTTCCTGTTT
66 TAACGCTCAAACAGGGGCAGATTTCTCTGTACACAGTACTGCACCGCGCGACAAGTTTCCTGTTT
74264 TATTGGCATTCTTTTGCAATTTGTTGGACTTGAATTAAAAGTCGATAAAAGCCATCTCTCTCTCT
131 TATTGGCATTCTTTTGCAATTTGTTGGACTTGAATTAAAAGTCGATAAAAGCCATCTCTCTCTCT
74329 CTCTC
196 CTCTC
74334 TTCTCTCTCCCATAACAAATGATTACTCCAGCTAATGCCGCTAGGACAGGCCCCCAACGGCCGCT
1 TTCTCTCTCCCATAACAAATGATTACTCCAGCTAATGCCGCTAGGACAGGCCCCCAACGGCCGCT
74399 TAACGCTCAAACAGGGGCAGATTTCTCTGTACACAGTACTGCACCGCGCGACAAGTTTCCTGTTT
66 TAACGCTCAAACAGGGGCAGATTTCTCTGTACACAGTACTGCACCGCGCGACAAGTTTCCTGTTT
74464 TATTGGCATTCTTTTGCAATTTGTTGGACTTGAATTAAAAGTCGATAAAAGCCATCTCTCTCTCT
131 TATTGGCATTCTTTTGCAATTTGTTGGACTTGAATTAAAAGTCGATAAAAGCCATCTCTCTCTCT
74529 CTCTC
196 CTCTC
74534 TCTCTCTCTC
1 T-TCTCTCTC
74544 TCTCTCTCCA
Statistics
Matches: 209, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
200 201 0.96
201 8 0.04
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.30
Consensus pattern (200 bp):
TTCTCTCTCCCATAACAAATGATTACTCCAGCTAATGCCGCTAGGACAGGCCCCCAACGGCCGCT
TAACGCTCAAACAGGGGCAGATTTCTCTGTACACAGTACTGCACCGCGCGACAAGTTTCCTGTTT
TATTGGCATTCTTTTGCAATTTGTTGGACTTGAATTAAAAGTCGATAAAAGCCATCTCTCTCTCT
CTCTC
Found at i:74525 original size:2 final size:2
Alignment explanation
Indices: 74518--74551 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
74508 ATAAAAGCCA
74518 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
74552 CAATGAATCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:81925 original size:3 final size:3
Alignment explanation
Indices: 81917--81969 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
81907 TAAATATAGA
81917 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
81965 ATT AT
1 ATT AT
81970 CAGTAGTAGT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:85624 original size:20 final size:19
Alignment explanation
Indices: 85584--85629 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
85574 TTCTGATCAC
*
85584 CCGT-TGTCCGTCGTCCGT
1 CCGTCTGTCCGTCGTCCAT
*
85602 CCGTCTGTCTGTCTGTCCAT
1 CCGTCTGTCCGTC-GTCCAT
85622 CCGTCTGT
1 CCGTCTGT
85630 AAACTTTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 4 0.17
19 7 0.29
20 13 0.54
ACGTcount: A:0.02, C:0.37, G:0.24, T:0.37
Consensus pattern (19 bp):
CCGTCTGTCCGTCGTCCAT
Found at i:86176 original size:167 final size:167
Alignment explanation
Indices: 85783--86687 Score: 1503
Period size: 167 Copynumber: 5.4 Consensus size: 167
85773 TCTTTAAAAA
85783 TCTTCTCAAGAACCACTGCACCAGAAATGCCAATATTTACACAAAAGCTTGTATATATAGTGAAG
1 TCTTCTCAAGAACCACTGCACCAGAAATGCCAATATTTACACAAAAGCTTGTATATATAGTGAAG
*
85848 ATTCT-AATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCCTCAGGCGGGGTTCAAAGTTT
66 ATTCTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCCCCAGGCGGGGTTCAAAGTTT
* *
85912 AACATAGAAATACATA-GGAAAATGTTTAAAAAATCT
131 AACATAGAACTACATATGGAAAGTGTTTAAAAAATCT
*
85948 TCTTCTCAAGAACCACTGCACCAGAAATGCCAATATTTACACAAAAGCTTGTATATATAGTGAAT
1 TCTTCTCAAGAACCACTGCACCAGAAATGCCAATATTTACACAAAAGCTTGTATATATAGTGAAG
* *
86013 ATTCTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCCCCAGGCAGAGTTCAAAGTTT
66 ATTCTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCCCCAGGCGGGGTTCAAAGTTT
* * ** *
86078 AAGAAAGAACTATGTATGGAAAGCGTTTAAAAAATCT
131 AACATAGAACTACATATGGAAAGTGTTTAAAAAATCT
* *
86115 TCTTCTCAAGAACCACTGCACCAGAAATGCCAATATTTACACAAAAACTTGTACATATAGTGAAG
1 TCTTCTCAAGAACCACTGCACCAGAAATGCCAATATTTACACAAAAGCTTGTATATATAGTGAAG
* *
86180 ATTCTAAATTATAAAAATTGTGACCCTCGGACCAAAACTGGGGCCCCAGGCGGGGTTCAAAGTTT
66 ATTCTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCCCCAGGCGGGGTTCAAAGTTT
* *
86245 AACATAGAACTAAATATGTAAAGTGTTTAAAAAATCT
131 AACATAGAACTACATATGGAAAGTGTTTAAAAAATCT
* ** *
86282 CCTTCTCAAGAACCACTGCACCAGAAATGCCAATACATACACAAAAGCTTGTATACATAGTGAAG
1 TCTTCTCAAGAACCACTGCACCAGAAATGCCAATATTTACACAAAAGCTTGTATATATAGTGAAG
*
86347 ATTCTAAATTGTAAAAACCGTGACCCTCGGACCAAAACTGGGGCCCCAGGCGGGGTTCAAAGTTT
66 ATTCTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCCCCAGGCGGGGTTCAAAGTTT
* *
86412 AACATAGAAATACATA-GGAAAATGTTTAAAAAATCT
131 AACATAGAACTACATATGGAAAGTGTTTAAAAAATCT
*
86448 TCGTCTCAAGAACCACTGCACCAGAAATGCCAATATTTACACAAAAGCTTGTATATATAGTGAAG
1 TCTTCTCAAGAACCACTGCACCAGAAATGCCAATATTTACACAAAAGCTTGTATATATAGTGAAG
*
86513 ATTCTAAATTGTAAAAATTGTGACCCTCGGACCAAAACTGGGGCCCCAGGCGGGGTTCAAAGTTT
66 ATTCTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCCCCAGGCGGGGTTCAAAGTTT
*
86578 AACATAGAACTACATATGTAAAGTGTTTAAAAAATCT
131 AACATAGAACTACATATGGAAAGTGTTTAAAAAATCT
**
86615 TCTTCTCAAGAACCACTGCACCAGAAATGCCAATACATACACAAAAAG-TTGTATATATAGTGAA
1 TCTTCTCAAGAACCACTGCACCAGAAATGCCAATATTTACAC-AAAAGCTTGTATATATAGTGAA
*
86679 GATTGTAAA
65 GATTCTAAA
86688 AATCGTGACC
Statistics
Matches: 685, Mismatches: 51, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
165 69 0.10
166 223 0.33
167 388 0.57
168 5 0.01
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.25
Consensus pattern (167 bp):
TCTTCTCAAGAACCACTGCACCAGAAATGCCAATATTTACACAAAAGCTTGTATATATAGTGAAG
ATTCTAAATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCCCCAGGCGGGGTTCAAAGTTT
AACATAGAACTACATATGGAAAGTGTTTAAAAAATCT
Found at i:86483 original size:333 final size:334
Alignment explanation
Indices: 85786--86687 Score: 1533
Period size: 333 Copynumber: 2.7 Consensus size: 334
85776 TTAAAAATCT
85786 TCTCAAGAACCACTGCACCAGAAATGCCAATATTTACACAAAAGCTTGTATATATAGTGAAGATT
1 TCTCAAGAACCACTGCACCAGAAATGCCAATATTTACACAAAAGCTTGTATATATAGTGAAGATT
* *
85851 CT-AATTGTAAAAATCGTGACCCTCGGACCAAAACTGGGGCCTCAGGCGGGGTTCAAAGTTTAAC
66 CTAAATTGTAAAAATTGTGACCCTCGGACCAAAACTGGGGCCCCAGGCGGGGTTCAAAGTTTAAC
* * *
85915 ATAGAAATACATA-GGAAAATGTTTAAAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCC
131 ATAGAACTACATATGTAAAGTGTTTAAAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCC
** * *
85979 AATATTTACACAAAAGCTTGTATATATAGTGAATATTCTAAATTGTAAAAATCGTGACCCTCGGA
196 AATACATACACAAAAGCTTGTATATATAGTGAAGATTCTAAATTGTAAAAACCGTGACCCTCGGA
* * ** *
86044 CCAAAACTGGGGCCCCAGGCAGAGTTCAAAGTTTAAGAAAGAACTATGTATGGAAAGCGTTTAAA
261 CCAAAACTGGGGCCCCAGGCAGAGTTCAAAGTTTAACAAAGAAATACATATGGAAAACGTTTAAA
*
86109 AAATCTTCT
326 AAATCTTCG
* *
86118 TCTCAAGAACCACTGCACCAGAAATGCCAATATTTACACAAAAACTTGTACATATAGTGAAGATT
1 TCTCAAGAACCACTGCACCAGAAATGCCAATATTTACACAAAAGCTTGTATATATAGTGAAGATT
*
86183 CTAAATTATAAAAATTGTGACCCTCGGACCAAAACTGGGGCCCCAGGCGGGGTTCAAAGTTTAAC
66 CTAAATTGTAAAAATTGTGACCCTCGGACCAAAACTGGGGCCCCAGGCGGGGTTCAAAGTTTAAC
* *
86248 ATAGAACTAAATATGTAAAGTGTTTAAAAAATCTCCTTCTCAAGAACCACTGCACCAGAAATGCC
131 ATAGAACTACATATGTAAAGTGTTTAAAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCC
*
86313 AATACATACACAAAAGCTTGTATACATAGTGAAGATTCTAAATTGTAAAAACCGTGACCCTCGGA
196 AATACATACACAAAAGCTTGTATATATAGTGAAGATTCTAAATTGTAAAAACCGTGACCCTCGGA
* * * *
86378 CCAAAACTGGGGCCCCAGGCGGGGTTCAAAGTTTAACATAGAAATACATA-GGAAAATGTTTAAA
261 CCAAAACTGGGGCCCCAGGCAGAGTTCAAAGTTTAACAAAGAAATACATATGGAAAACGTTTAAA
86442 AAATCTTCG
326 AAATCTTCG
86451 TCTCAAGAACCACTGCACCAGAAATGCCAATATTTACACAAAAGCTTGTATATATAGTGAAGATT
1 TCTCAAGAACCACTGCACCAGAAATGCCAATATTTACACAAAAGCTTGTATATATAGTGAAGATT
86516 CTAAATTGTAAAAATTGTGACCCTCGGACCAAAACTGGGGCCCCAGGCGGGGTTCAAAGTTTAAC
66 CTAAATTGTAAAAATTGTGACCCTCGGACCAAAACTGGGGCCCCAGGCGGGGTTCAAAGTTTAAC
86581 ATAGAACTACATATGTAAAGTGTTTAAAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCC
131 ATAGAACTACATATGTAAAGTGTTTAAAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCC
*
86646 AATACATACACAAAAAG-TTGTATATATAGTGAAGATTGTAAA
196 AATACATACAC-AAAAGCTTGTATATATAGTGAAGATTCTAAA
86688 AATCGTGACC
Statistics
Matches: 535, Mismatches: 32, Indels: 5
0.94 0.06 0.01
Matches are distributed among these distances:
332 65 0.12
333 314 0.59
334 156 0.29
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.25
Consensus pattern (334 bp):
TCTCAAGAACCACTGCACCAGAAATGCCAATATTTACACAAAAGCTTGTATATATAGTGAAGATT
CTAAATTGTAAAAATTGTGACCCTCGGACCAAAACTGGGGCCCCAGGCGGGGTTCAAAGTTTAAC
ATAGAACTACATATGTAAAGTGTTTAAAAAATCTTCTTCTCAAGAACCACTGCACCAGAAATGCC
AATACATACACAAAAGCTTGTATATATAGTGAAGATTCTAAATTGTAAAAACCGTGACCCTCGGA
CCAAAACTGGGGCCCCAGGCAGAGTTCAAAGTTTAACAAAGAAATACATATGGAAAACGTTTAAA
AAATCTTCG
Found at i:93090 original size:12 final size:12
Alignment explanation
Indices: 93073--93118 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
93063 GTGCTGTTTA
93073 TTTTTTATTTTT
1 TTTTTTATTTTT
93085 TTTTTTATTTTCT
1 TTTTTTATTTT-T
* **
93098 TTTATTATCATT
1 TTTTTTATTTTT
93110 TTTTTTATT
1 TTTTTTATT
93119 AGTAAATGTA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
12 19 0.68
13 9 0.32
ACGTcount: A:0.13, C:0.04, G:0.00, T:0.83
Consensus pattern (12 bp):
TTTTTTATTTTT
Found at i:95573 original size:13 final size:13
Alignment explanation
Indices: 95555--95580 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
95545 TGTTATTTTC
95555 TTTGAAATTTACA
1 TTTGAAATTTACA
95568 TTTGAAATTTACA
1 TTTGAAATTTACA
95581 AGTCAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (13 bp):
TTTGAAATTTACA
Found at i:104648 original size:15 final size:15
Alignment explanation
Indices: 104628--104669 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
104618 TTATTATTAA
104628 TTTTGTTTTTTGTTG
1 TTTTGTTTTTTGTTG
104643 TTTTGTTTTGTT-TTG
1 TTTTGTTTT-TTGTTG
*
104658 TTTTTTTTTTTG
1 TTTTGTTTTTTG
104670 GAAGCAAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
14 2 0.08
15 20 0.83
16 2 0.08
ACGTcount: A:0.00, C:0.00, G:0.17, T:0.83
Consensus pattern (15 bp):
TTTTGTTTTTTGTTG
Found at i:104658 original size:18 final size:17
Alignment explanation
Indices: 104635--104669 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
104625 TAATTTTGTT
104635 TTTTGTTGTTTTGTTTTG
1 TTTTGTT-TTTTGTTTTG
*
104653 TTTTGTTTTTTTTTTTG
1 TTTTGTTTTTTGTTTTG
104670 GAAGCAAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.00, C:0.00, G:0.17, T:0.83
Consensus pattern (17 bp):
TTTTGTTTTTTGTTTTG
Found at i:104668 original size:5 final size:5
Alignment explanation
Indices: 104628--104665 Score: 53
Period size: 5 Copynumber: 7.8 Consensus size: 5
104618 TTATTATTAA
104628 TTTTG TTTT- TTGTTG TTTTG TTTTG TTTTG TTTT- TTTT
1 TTTTG TTTTG TT-TTG TTTTG TTTTG TTTTG TTTTG TTTT
104666 TTTGGAAGCA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
4 6 0.19
5 23 0.74
6 2 0.06
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (5 bp):
TTTTG
Found at i:104852 original size:17 final size:16
Alignment explanation
Indices: 104816--104855 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
104806 AATAAATTAT
*
104816 AAAA-AAAAAAAAGGA
1 AAAAGAAAAAAAAGAA
104831 AAAAGAAAAAAAAGAA
1 AAAAGAAAAAAAAGAA
104847 AGAAAGAAA
1 A-AAAGAAA
104856 GAATAAAATG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 4 0.18
16 11 0.50
17 7 0.32
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (16 bp):
AAAAGAAAAAAAAGAA
Found at i:104856 original size:21 final size:20
Alignment explanation
Indices: 104816--104863 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 20
104806 AATAAATTAT
*
104816 AAAAAAAAAAAAGGAAAAAG
1 AAAAAAAAAAAAGAAAAAAG
*
104836 AAAAAAAAGAAAGAAAGAAAG
1 AAAAAAAAAAAAGAAA-AAAG
104857 AATAAAA
1 AA-AAAA
104864 TGTAGAATTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 14 0.58
21 6 0.25
22 4 0.17
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (20 bp):
AAAAAAAAAAAAGAAAAAAG
Found at i:105724 original size:22 final size:21
Alignment explanation
Indices: 105681--105725 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
105671 GATGTAACGC
105681 TAGCGTTGACAATGACGTAAA
1 TAGCGTTGACAATGACGTAAA
105702 TAGCGTTGACACCATG-CGTAAA
1 TAGCGTTGACA--ATGACGTAAA
105724 TA
1 TA
105726 TGTCTATGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 11 0.50
22 8 0.36
23 3 0.14
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24
Consensus pattern (21 bp):
TAGCGTTGACAATGACGTAAA
Found at i:109442 original size:168 final size:168
Alignment explanation
Indices: 109106--109911 Score: 1103
Period size: 168 Copynumber: 4.8 Consensus size: 168
109096 GTGGCAGTAG
* * * *
109106 AGAAGATTTTTTAAGATTTAAAACAGTTTTACTATATGGCCATATTAGCCCCACCCTAGAGCCTG
1 AGAAGATTTTCTAAGATTTAAAACATTTTTACTATTTGGCCATATTGGCCCCACCCTAGAGCCTG
* ** * * *
109171 AACACCTAACAAAGGGGTCATTAATTTCACAATTTTAGTAGAGGCCCTCATGGACATCATAACCA
66 AACACCTGACCCAGGGGTCATGAATTTCACAATTTTGGTAGAGGGCCTCATGGACATCATAACCA
* * ** ** * * *
109236 TGTATTCAGTTTTTTGCTCACATGTGTGGGAGTAGAGA
131 TGCATTTAGTTTTTAACAAATATATATGGGAGTAGAGA
* *
109274 AGAAGATTTT-TAAGATTTAAAACAATTTTACTATATGGCCATATTGGCCCCACCCTAGAGCCTG
1 AGAAGATTTTCTAAGATTTAAAACATTTTTACTATTTGGCCATATTGGCCCCACCCTAGAGCCTG
* ** * *
109338 AACACCTAACAAAGGGGTCATGAATTTTACAATTTTTGGTAGAGGGCCTCATAGACATCATAACC
66 AACACCTGACCCAGGGGTCATGAATTTCACAA-TTTTGGTAGAGGGCCTCATGGACATCATAACC
*
109403 ATGCATTTGGTTTTTAACAAATATATATGGGAGTAGAGA
130 ATGCATTTAGTTTTTAACAAATATATATGGGAGTAGAGA
* * * * *
109442 AGAAGATTTTCTAAGATTTAATACATTTTTAGTATTTGGCCACATTGGCCTCACCCTAGAGTCTG
1 AGAAGATTTTCTAAGATTTAAAACATTTTTACTATTTGGCCATATTGGCCCCACCCTAGAGCCTG
* * * *
109507 AACCCCTGACCCAGGTGTCATGAATTTCACAATTTTGATAGAGGGCCTCATGGACATCATAATCA
66 AACACCTGACCCAGGGGTCATGAATTTCACAATTTTGGTAGAGGGCCTCATGGACATCATAACCA
*
109572 TGCATTTAGTTTTTAACAAATATATATGGGAATAGAGA
131 TGCATTTAGTTTTTAACAAATATATATGGGAGTAGAGA
*
109610 AGAAGATTTTCTAAGATTTAATAA-ATTTTTACTATTTGGCCATATTGGCCCCACCCTAGATCCT
1 AGAAGATTTTCTAAGATTTAA-AACATTTTTACTATTTGGCCATATTGGCCCCACCCTAGAGCCT
* * * *
109674 GAACCCCTGACCCAGGGGTCATGAATTTCACAATTTAGGTAGAGGGCTTCATGGACATCATAATC
65 GAACACCTGACCCAGGGGTCATGAATTTCACAATTTTGGTAGAGGGCCTCATGGACATCATAACC
* * *
109739 ATGCATTTAGTTTTTAAAAAATATATATGGTAGTAAAGA
130 ATGCATTTAGTTTTTAACAAATATATATGGGAGTAGAGA
* * *
109778 AGAAAATTTTCTAAGATTTAATACATTTTTACTATTTGGCCATATTGGCCCCACCCTAGAGCCAG
1 AGAAGATTTTCTAAGATTTAAAACATTTTTACTATTTGGCCATATTGGCCCCACCCTAGAGCCTG
* * * * *
109843 AACTCCTGACCCTGGGGCCATAAATTTCACAATTTTGGTAGAGGGCTTCATGGACATCATAACCA
66 AACACCTGACCCAGGGGTCATGAATTTCACAATTTTGGTAGAGGGCCTCATGGACATCATAACCA
109908 TGCA
131 TGCA
109912 ACCGTTTTTT
Statistics
Matches: 575, Mismatches: 59, Indels: 8
0.90 0.09 0.01
Matches are distributed among these distances:
167 83 0.14
168 418 0.73
169 74 0.13
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (168 bp):
AGAAGATTTTCTAAGATTTAAAACATTTTTACTATTTGGCCATATTGGCCCCACCCTAGAGCCTG
AACACCTGACCCAGGGGTCATGAATTTCACAATTTTGGTAGAGGGCCTCATGGACATCATAACCA
TGCATTTAGTTTTTAACAAATATATATGGGAGTAGAGA
Found at i:109949 original size:168 final size:168
Alignment explanation
Indices: 109002--109911 Score: 1101
Period size: 168 Copynumber: 5.4 Consensus size: 168
108992 CCTTTCATGT
* * * * ** *
109002 CCTGAACCCCTGACCAAGGGGCCATGAATTTCACAATTTAGGTAAAGGAG-ATTGTGGATATCAT
1 CCTGAACCCCTGACCAAGGGGTCATGAATTTCACAATTTTGGTAGAGG-GCCTCATGGACATCAT
* ** ** * * * * *
109066 AACCATGTATTCAGTTTTTTGCCCACATGTGTGGCAGT--AG-AGAAGATTTTTTAAGATTTAAA
65 AACCATGCATTCAGTTTTTAACAAACATATATGGGAGTAGAGAAGAAGATTTTCTAAGATTTAAT
* * *
109128 ACAGTTTTACTATATGGCCATATTAGCCCCACCCTAGAG
130 ACATTTTTACTATTTGGCCATATTGGCCCCACCCTAGAG
* * * * * *
109167 CCTGAACACCTAACAAAGGGGTCATTAATTTCACAATTTTAGTAGAGGCCCTCATGGACATCATA
1 CCTGAACCCCTGACCAAGGGGTCATGAATTTCACAATTTTGGTAGAGGGCCTCATGGACATCATA
* ** ** * * *
109232 ACCATGTATTCAGTTTTTTGCTCACATGTGTGGGAGTAGAGAAGAAGATTTT-TAAGATTTAAAA
66 ACCATGCATTCAGTTTTTAACAAACATATATGGGAGTAGAGAAGAAGATTTTCTAAGATTTAATA
* *
109296 CAATTTTACTATATGGCCATATTGGCCCCACCCTAGAG
131 CATTTTTACTATTTGGCCATATTGGCCCCACCCTAGAG
* * * * *
109334 CCTGAACACCTAACAAAGGGGTCATGAATTTTACAATTTTTGGTAGAGGGCCTCATAGACATCAT
1 CCTGAACCCCTGACCAAGGGGTCATGAATTTCACAA-TTTTGGTAGAGGGCCTCATGGACATCAT
** *
109399 AACCATGCATTTGGTTTTTAACAAATATATATGGGAGTAGAGAAGAAGATTTTCTAAGATTTAAT
65 AACCATGCATTCAGTTTTTAACAAACATATATGGGAGTAGAGAAGAAGATTTTCTAAGATTTAAT
* * *
109464 ACATTTTTAGTATTTGGCCACATTGGCCTCACCCTAGAG
130 ACATTTTTACTATTTGGCCATATTGGCCCCACCCTAGAG
* * * *
109503 TCTGAACCCCTGACCCAGGTGTCATGAATTTCACAATTTTGATAGAGGGCCTCATGGACATCATA
1 CCTGAACCCCTGACCAAGGGGTCATGAATTTCACAATTTTGGTAGAGGGCCTCATGGACATCATA
* * * *
109568 ATCATGCATTTAGTTTTTAACAAATATATATGGGAATAGAGAAGAAGATTTTCTAAGATTTAATA
66 ACCATGCATTCAGTTTTTAACAAACATATATGGGAGTAGAGAAGAAGATTTTCTAAGATTTAATA
* *
109633 AATTTTTACTATTTGGCCATATTGGCCCCACCCTAGAT
131 CATTTTTACTATTTGGCCATATTGGCCCCACCCTAGAG
* * *
109671 CCTGAACCCCTGACCCAGGGGTCATGAATTTCACAATTTAGGTAGAGGGCTTCATGGACATCATA
1 CCTGAACCCCTGACCAAGGGGTCATGAATTTCACAATTTTGGTAGAGGGCCTCATGGACATCATA
* * * * * * *
109736 ATCATGCATTTAGTTTTTAAAAAATATATATGGTAGTAAAGAAGAAAATTTTCTAAGATTTAATA
66 ACCATGCATTCAGTTTTTAACAAACATATATGGGAGTAGAGAAGAAGATTTTCTAAGATTTAATA
109801 CATTTTTACTATTTGGCCATATTGGCCCCACCCTAGAG
131 CATTTTTACTATTTGGCCATATTGGCCCCACCCTAGAG
* * ** * * *
109839 CCAGAACTCCTGACCCTGGGGCCATAAATTTCACAATTTTGGTAGAGGGCTTCATGGACATCATA
1 CCTGAACCCCTGACCAAGGGGTCATGAATTTCACAATTTTGGTAGAGGGCCTCATGGACATCATA
109904 ACCATGCA
66 ACCATGCA
109912 ACCGTTTTTT
Statistics
Matches: 665, Mismatches: 74, Indels: 9
0.89 0.10 0.01
Matches are distributed among these distances:
165 86 0.13
167 84 0.13
168 422 0.63
169 73 0.11
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (168 bp):
CCTGAACCCCTGACCAAGGGGTCATGAATTTCACAATTTTGGTAGAGGGCCTCATGGACATCATA
ACCATGCATTCAGTTTTTAACAAACATATATGGGAGTAGAGAAGAAGATTTTCTAAGATTTAATA
CATTTTTACTATTTGGCCATATTGGCCCCACCCTAGAG
Found at i:111627 original size:168 final size:168
Alignment explanation
Indices: 111291--112096 Score: 1103
Period size: 168 Copynumber: 4.8 Consensus size: 168
111281 GTGGCAGTAG
* * * *
111291 AGAAGATTTTTTAAGATTTAAAACAGTTTTACTATATGGCCATATTAGCCCCACCCTAGAGCCTG
1 AGAAGATTTTCTAAGATTTAAAACATTTTTACTATTTGGCCATATTGGCCCCACCCTAGAGCCTG
* ** * * *
111356 AACACCTAACAAAGGGGTCATTAATTTCACAATTTTAGTAGAGGCCCTCATGGACATCATAACCA
66 AACACCTGACCCAGGGGTCATGAATTTCACAATTTTGGTAGAGGGCCTCATGGACATCATAACCA
* * ** ** * * *
111421 TGTATTCAGTTTTTTGCTCACATGTGTGGGAGTAGAGA
131 TGCATTTAGTTTTTAACAAATATATATGGGAGTAGAGA
* *
111459 AGAAGATTTT-TAAGATTTAAAACAATTTTACTATATGGCCATATTGGCCCCACCCTAGAGCCTG
1 AGAAGATTTTCTAAGATTTAAAACATTTTTACTATTTGGCCATATTGGCCCCACCCTAGAGCCTG
* ** * *
111523 AACACCTAACAAAGGGGTCATGAATTTTACAATTTTTGGTAGAGGGCCTCATAGACATCATAACC
66 AACACCTGACCCAGGGGTCATGAATTTCACAA-TTTTGGTAGAGGGCCTCATGGACATCATAACC
*
111588 ATGCATTTGGTTTTTAACAAATATATATGGGAGTAGAGA
130 ATGCATTTAGTTTTTAACAAATATATATGGGAGTAGAGA
* * * * *
111627 AGAAGATTTTCTAAGATTTAATACATTTTTAGTATTTGGCCACATTGGCCTCACCCTAGAGTCTG
1 AGAAGATTTTCTAAGATTTAAAACATTTTTACTATTTGGCCATATTGGCCCCACCCTAGAGCCTG
* * * *
111692 AACCCCTGACCCAGGTGTCATGAATTTCACAATTTTGATAGAGGGCCTCATGGACATCATAATCA
66 AACACCTGACCCAGGGGTCATGAATTTCACAATTTTGGTAGAGGGCCTCATGGACATCATAACCA
*
111757 TGCATTTAGTTTTTAACAAATATATATGGGAATAGAGA
131 TGCATTTAGTTTTTAACAAATATATATGGGAGTAGAGA
*
111795 AGAAGATTTTCTAAGATTTAATAA-ATTTTTACTATTTGGCCATATTGGCCCCACCCTAGATCCT
1 AGAAGATTTTCTAAGATTTAA-AACATTTTTACTATTTGGCCATATTGGCCCCACCCTAGAGCCT
* * * *
111859 GAACCCCTGACCCAGGGGTCATGAATTTCACAATTTAGGTAGAGGGCTTCATGGACATCATAATC
65 GAACACCTGACCCAGGGGTCATGAATTTCACAATTTTGGTAGAGGGCCTCATGGACATCATAACC
* * *
111924 ATGCATTTAGTTTTTAAAAAATATATATGGTAGTAAAGA
130 ATGCATTTAGTTTTTAACAAATATATATGGGAGTAGAGA
* * *
111963 AGAAAATTTTCTAAGATTTAATACATTTTTACTATTTGGCCATATTGGCCCCACCCTAGAGCCAG
1 AGAAGATTTTCTAAGATTTAAAACATTTTTACTATTTGGCCATATTGGCCCCACCCTAGAGCCTG
* * * * *
112028 AACTCCTGACCCTGGGGCCATAAATTTCACAATTTTGGTAGAGGGCTTCATGGACATCATAACCA
66 AACACCTGACCCAGGGGTCATGAATTTCACAATTTTGGTAGAGGGCCTCATGGACATCATAACCA
112093 TGCA
131 TGCA
112097 ACCGTTTTTT
Statistics
Matches: 575, Mismatches: 59, Indels: 8
0.90 0.09 0.01
Matches are distributed among these distances:
167 83 0.14
168 418 0.73
169 74 0.13
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (168 bp):
AGAAGATTTTCTAAGATTTAAAACATTTTTACTATTTGGCCATATTGGCCCCACCCTAGAGCCTG
AACACCTGACCCAGGGGTCATGAATTTCACAATTTTGGTAGAGGGCCTCATGGACATCATAACCA
TGCATTTAGTTTTTAACAAATATATATGGGAGTAGAGA
Found at i:112134 original size:168 final size:168
Alignment explanation
Indices: 111187--112096 Score: 1101
Period size: 168 Copynumber: 5.4 Consensus size: 168
111177 CCTTTCATGT
* * * * ** *
111187 CCTGAACCCCTGACCAAGGGGCCATGAATTTCACAATTTAGGTAAAGGAG-ATTGTGGATATCAT
1 CCTGAACCCCTGACCAAGGGGTCATGAATTTCACAATTTTGGTAGAGG-GCCTCATGGACATCAT
* ** ** * * * * *
111251 AACCATGTATTCAGTTTTTTGCCCACATGTGTGGCAGT--AG-AGAAGATTTTTTAAGATTTAAA
65 AACCATGCATTCAGTTTTTAACAAACATATATGGGAGTAGAGAAGAAGATTTTCTAAGATTTAAT
* * *
111313 ACAGTTTTACTATATGGCCATATTAGCCCCACCCTAGAG
130 ACATTTTTACTATTTGGCCATATTGGCCCCACCCTAGAG
* * * * * *
111352 CCTGAACACCTAACAAAGGGGTCATTAATTTCACAATTTTAGTAGAGGCCCTCATGGACATCATA
1 CCTGAACCCCTGACCAAGGGGTCATGAATTTCACAATTTTGGTAGAGGGCCTCATGGACATCATA
* ** ** * * *
111417 ACCATGTATTCAGTTTTTTGCTCACATGTGTGGGAGTAGAGAAGAAGATTTT-TAAGATTTAAAA
66 ACCATGCATTCAGTTTTTAACAAACATATATGGGAGTAGAGAAGAAGATTTTCTAAGATTTAATA
* *
111481 CAATTTTACTATATGGCCATATTGGCCCCACCCTAGAG
131 CATTTTTACTATTTGGCCATATTGGCCCCACCCTAGAG
* * * * *
111519 CCTGAACACCTAACAAAGGGGTCATGAATTTTACAATTTTTGGTAGAGGGCCTCATAGACATCAT
1 CCTGAACCCCTGACCAAGGGGTCATGAATTTCACAA-TTTTGGTAGAGGGCCTCATGGACATCAT
** *
111584 AACCATGCATTTGGTTTTTAACAAATATATATGGGAGTAGAGAAGAAGATTTTCTAAGATTTAAT
65 AACCATGCATTCAGTTTTTAACAAACATATATGGGAGTAGAGAAGAAGATTTTCTAAGATTTAAT
* * *
111649 ACATTTTTAGTATTTGGCCACATTGGCCTCACCCTAGAG
130 ACATTTTTACTATTTGGCCATATTGGCCCCACCCTAGAG
* * * *
111688 TCTGAACCCCTGACCCAGGTGTCATGAATTTCACAATTTTGATAGAGGGCCTCATGGACATCATA
1 CCTGAACCCCTGACCAAGGGGTCATGAATTTCACAATTTTGGTAGAGGGCCTCATGGACATCATA
* * * *
111753 ATCATGCATTTAGTTTTTAACAAATATATATGGGAATAGAGAAGAAGATTTTCTAAGATTTAATA
66 ACCATGCATTCAGTTTTTAACAAACATATATGGGAGTAGAGAAGAAGATTTTCTAAGATTTAATA
* *
111818 AATTTTTACTATTTGGCCATATTGGCCCCACCCTAGAT
131 CATTTTTACTATTTGGCCATATTGGCCCCACCCTAGAG
* * *
111856 CCTGAACCCCTGACCCAGGGGTCATGAATTTCACAATTTAGGTAGAGGGCTTCATGGACATCATA
1 CCTGAACCCCTGACCAAGGGGTCATGAATTTCACAATTTTGGTAGAGGGCCTCATGGACATCATA
* * * * * * *
111921 ATCATGCATTTAGTTTTTAAAAAATATATATGGTAGTAAAGAAGAAAATTTTCTAAGATTTAATA
66 ACCATGCATTCAGTTTTTAACAAACATATATGGGAGTAGAGAAGAAGATTTTCTAAGATTTAATA
111986 CATTTTTACTATTTGGCCATATTGGCCCCACCCTAGAG
131 CATTTTTACTATTTGGCCATATTGGCCCCACCCTAGAG
* * ** * * *
112024 CCAGAACTCCTGACCCTGGGGCCATAAATTTCACAATTTTGGTAGAGGGCTTCATGGACATCATA
1 CCTGAACCCCTGACCAAGGGGTCATGAATTTCACAATTTTGGTAGAGGGCCTCATGGACATCATA
112089 ACCATGCA
66 ACCATGCA
112097 ACCGTTTTTT
Statistics
Matches: 665, Mismatches: 74, Indels: 9
0.89 0.10 0.01
Matches are distributed among these distances:
165 86 0.13
167 84 0.13
168 422 0.63
169 73 0.11
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (168 bp):
CCTGAACCCCTGACCAAGGGGTCATGAATTTCACAATTTTGGTAGAGGGCCTCATGGACATCATA
ACCATGCATTCAGTTTTTAACAAACATATATGGGAGTAGAGAAGAAGATTTTCTAAGATTTAATA
CATTTTTACTATTTGGCCATATTGGCCCCACCCTAGAG
Found at i:114523 original size:47 final size:48
Alignment explanation
Indices: 114465--114556 Score: 141
Period size: 47 Copynumber: 1.9 Consensus size: 48
114455 ATAAGAATCG
*
114465 TTGCTCGTTGCTGCATAAATTTTATCAAATTTATGTGTG-ACTGTATC
1 TTGCTCATTGCTGCATAAATTTTATCAAATTTATGTGTGAACTGTATC
* * *
114512 TTGCTCATTGCTGCATACATTTTGTGAAATTTATGTGTGAACTGT
1 TTGCTCATTGCTGCATAAATTTTATCAAATTTATGTGTGAACTGT
114557 GATTATGTAC
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
47 35 0.88
48 5 0.12
ACGTcount: A:0.23, C:0.14, G:0.18, T:0.45
Consensus pattern (48 bp):
TTGCTCATTGCTGCATAAATTTTATCAAATTTATGTGTGAACTGTATC
Found at i:118256 original size:41 final size:41
Alignment explanation
Indices: 118199--118278 Score: 160
Period size: 41 Copynumber: 2.0 Consensus size: 41
118189 CAAAATGAAT
118199 GTAAAGAATTATCAACTTTAGAAGTTTACGGATTTTAGCTA
1 GTAAAGAATTATCAACTTTAGAAGTTTACGGATTTTAGCTA
118240 GTAAAGAATTATCAACTTTAGAAGTTTACGGATTTTAGC
1 GTAAAGAATTATCAACTTTAGAAGTTTACGGATTTTAGC
118279 CCGTAATTGC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.36
Consensus pattern (41 bp):
GTAAAGAATTATCAACTTTAGAAGTTTACGGATTTTAGCTA
Found at i:127308 original size:25 final size:25
Alignment explanation
Indices: 127280--127327 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
127270 TCAAGCTCTG
*
127280 GAAGTCTATACTTCTCCATGCTCCA
1 GAAGTCTATACTTCACCATGCTCCA
* *
127305 GAAGTCTATGCTTCACTATGCTC
1 GAAGTCTATACTTCACCATGCTC
127328 TGAGCTATGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.33
Consensus pattern (25 bp):
GAAGTCTATACTTCACCATGCTCCA
Found at i:132784 original size:2 final size:2
Alignment explanation
Indices: 132777--132821 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
132767 GGAAACGCTT
132777 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
132819 TC T
1 TC T
132822 ATATATATAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:148975 original size:65 final size:66
Alignment explanation
Indices: 148862--149142 Score: 284
Period size: 65 Copynumber: 4.3 Consensus size: 66
148852 AATATTTCAT
* * * * *
148862 AGCCATAATATTTT-AACCCCCTCTCCAA-AGGGAACTGGAAATAGGAGGGAGGTTCAAAATATC
1 AGCCATAATATTTTGAACCCCCTCTCCAATA-GCAACTGAAAAAAAGAGGGGGGTTCAAAATATC
148925 GC
65 GC
*
148927 AGCCATAATATTTTGAACCCCCTCTCCAATAGCAA-TGAAAAAAAGAGGGGGGTTCAAAATATTG
1 AGCCATAATATTTTGAACCCCCTCTCCAATAGCAACTGAAAAAAAGAGGGGGGTTCAAAATATCG
148991 C
66 C
* * * * * * * * * * **
148992 TGCCTTAATGTTGTGAACCCCCTCTCCAATGGTAATTGGAAAAAGGAGAGGGGTTCAATTTATCG
1 AGCCATAATATTTTGAACCCCCTCTCCAATAGCAACTGAAAAAAAGAGGGGGGTTCAAAATATCG
149057 C
66 C
* * ** **
149058 GGCCATAATATTTCGAATTCCCTCTCCAATAGCAA-TGAAAATTAGAGGGGGGTAT-AAAATATC
1 AGCCATAATATTTTGAACCCCCTCTCCAATAGCAACTGAAAAAAAGAGGGGGGT-TCAAAATATC
149121 GC
65 GC
*
149123 GGCCATAATATTTTGAACCC
1 AGCCATAATATTTTGAACCC
149143 AGGGTTCAAT
Statistics
Matches: 175, Mismatches: 37, Indels: 8
0.80 0.17 0.04
Matches are distributed among these distances:
65 106 0.61
66 68 0.39
67 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (66 bp):
AGCCATAATATTTTGAACCCCCTCTCCAATAGCAACTGAAAAAAAGAGGGGGGTTCAAAATATCG
C
Found at i:149033 original size:131 final size:131
Alignment explanation
Indices: 148863--149142 Score: 359
Period size: 131 Copynumber: 2.1 Consensus size: 131
148853 ATATTTCATA
* *
148863 GCCATAATATT-TTAACCCCCTCTCCAAAGGGAACTGGAAATAGGAG-GGAGGTTCAAAATATCG
1 GCCATAATATTGTGAACCCCCTCTCCAAAGGGAACTGGAAAAAGGAGAGG-GGTTCAAAATATCG
* *
148926 CAGCCATAATATTTTGAACCCCCTCTCCAATAGCAATGAAAAAAAGAGGGGGGT-TCAAAATATT
65 CAGCCATAATATTTCGAACCCCCTCTCCAATAGCAATGAAAAAAAGAGGGGGGTAT-AAAATATC
*
148990 GCT
129 GCG
* * * * * **
148993 GCCTTAATGTTGTGAACCCCCTCTCCAATGGTAATTGGAAAAAGGAGAGGGGTTCAATTTATCGC
1 GCCATAATATTGTGAACCCCCTCTCCAAAGGGAACTGGAAAAAGGAGAGGGGTTCAAAATATCGC
* ** **
149058 GGCCATAATATTTCGAATTCCCTCTCCAATAGCAATGAAAATTAGAGGGGGGTATAAAATATCGC
66 AGCCATAATATTTCGAACCCCCTCTCCAATAGCAATGAAAAAAAGAGGGGGGTATAAAATATCGC
149123 G
131 G
*
149124 GCCATAATATTTTGAACCC
1 GCCATAATATTGTGAACCC
149143 AGGGTTCAAT
Statistics
Matches: 127, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
130 9 0.07
131 115 0.91
132 3 0.02
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (131 bp):
GCCATAATATTGTGAACCCCCTCTCCAAAGGGAACTGGAAAAAGGAGAGGGGTTCAAAATATCGC
AGCCATAATATTTCGAACCCCCTCTCCAATAGCAATGAAAAAAAGAGGGGGGTATAAAATATCGC
G
Found at i:149477 original size:27 final size:27
Alignment explanation
Indices: 149439--149703 Score: 253
Period size: 27 Copynumber: 9.9 Consensus size: 27
149429 TAGGCCTGTA
* * *
149439 AGTCACATGATCATAGTGGGGTTCATT
1 AGTCACATGATCATACTGTGGTTCAAT
* *
149466 AGTCGCATGATCCTACTGTGGTTCAAT
1 AGTCACATGATCATACTGTGGTTCAAT
* ** *
149493 AGTCACATGATCAAACTGTAATTCATT
1 AGTCACATGATCATACTGTGGTTCAAT
* * *
149520 AGTCACAGGATTATACAGTGGTTCAAT
1 AGTCACATGATCATACTGTGGTTCAAT
* * *
149547 AGTCACATGATCATATTGTTGTTCTAT
1 AGTCACATGATCATACTGTGGTTCAAT
149574 AGTCACATGATCATACTGTGGTTCAAT
1 AGTCACATGATCATACTGTGGTTCAAT
* * * *
149601 ACTCACATGATCATACCGTGGTTTACT
1 AGTCACATGATCATACTGTGGTTCAAT
* * * ** *
149628 AGACACGTGATCACACCAT-GTTCACT
1 AGTCACATGATCATACTGTGGTTCAAT
* * *
149654 AGTCACATGACCATACTGTAGTTCACT
1 AGTCACATGATCATACTGTGGTTCAAT
* *
149681 AGTCACATGATCAAAGTGTGGTT
1 AGTCACATGATCATACTGTGGTT
149704 TAGTATTCAC
Statistics
Matches: 190, Mismatches: 47, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
26 19 0.10
27 171 0.90
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.32
Consensus pattern (27 bp):
AGTCACATGATCATACTGTGGTTCAAT
Found at i:153004 original size:21 final size:22
Alignment explanation
Indices: 152935--153179 Score: 189
Period size: 21 Copynumber: 11.8 Consensus size: 22
152925 ATATAACTTG
* *
152935 TTCGTCCGAA-AAA-ATCCAAA
1 TTCGTCCGAACAAATAACCTAA
*
152955 TTCGTCCGAAC--A-AACCGTGA
1 TTCGTCCGAACAAATAACC-TAA
*
152975 TTCGTCCGAATAAATAACCT-A
1 TTCGTCCGAACAAATAACCTAA
*
152996 TTTGTCCGAACAAATAA-CTAA
1 TTCGTCCGAACAAATAACCTAA
153017 TTCGTCCGAACAAATAA-CTAA
1 TTCGTCCGAACAAATAACCTAA
* * *
153038 TTCGTCAGAA-AAA-ATCCAAA
1 TTCGTCCGAACAAATAACCTAA
*
153058 TTCGTCCGAAC--A-AACCGTGA
1 TTCGTCCGAACAAATAACC-TAA
* *
153078 TTTGTCCGAATAAATAACCT-A
1 TTCGTCCGAACAAATAACCTAA
* * *
153099 TTTGTCCGCACAAAT-AGCTAA
1 TTCGTCCGAACAAATAACCTAA
*
153120 GTCGTCCGAACAAATAA-CTAA
1 TTCGTCCGAACAAATAACCTAA
* * *
153141 TTCGTCAGAAAAAAAAACCTAA
1 TTCGTCCGAACAAATAACCTAA
*
153163 TTTGTCCGAACAAATAA
1 TTCGTCCGAACAAATAA
153180 GTTTTGTACA
Statistics
Matches: 180, Mismatches: 30, Indels: 28
0.76 0.13 0.12
Matches are distributed among these distances:
19 9 0.05
20 51 0.28
21 90 0.50
22 22 0.12
23 8 0.04
ACGTcount: A:0.41, C:0.23, G:0.12, T:0.24
Consensus pattern (22 bp):
TTCGTCCGAACAAATAACCTAA
Found at i:153081 original size:82 final size:83
Alignment explanation
Indices: 152974--153179 Score: 213
Period size: 82 Copynumber: 2.5 Consensus size: 83
152964 ACAAACCGTG
*
152974 ATTCGTCCGAATAAATAACCT-ATTTGTCCGAACAAATAA-CTAATTCGTCCGAACAAATAACTA
1 ATTCGTCAGAA-AAA-AACCTAATTTGTCCGAACAAATAACCT-ATTCGTCCGAACAAATAACTA
* *
153037 ATTCGTCAGAAAAAAT-CCAA
63 AGTCGTCAGAAAAAATAACAA
* * * * * * *
153057 ATTCGTCCG-AACAAACCGTGATTTGTCCGAATAAATAACCTATTTGTCCGCACAAATAGCTAAG
1 ATTCGTCAGAAAAAAACC-TAATTTGTCCGAACAAATAACCTATTCGTCCGAACAAATAACTAAG
* * *
153121 TCGTCCGAACAAATAACTA
65 TCGTCAGAAAAAATAACAA
153140 ATTCGTCAGAAAAAAAAACCTAATTTGTCCGAACAAATAA
1 ATTCGTCAG--AAAAAAACCTAATTTGTCCGAACAAATAA
153180 GTTTTGTACA
Statistics
Matches: 102, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
80 4 0.04
81 3 0.03
82 49 0.48
83 21 0.21
85 18 0.18
86 7 0.07
ACGTcount: A:0.42, C:0.22, G:0.12, T:0.25
Consensus pattern (83 bp):
ATTCGTCAGAAAAAAACCTAATTTGTCCGAACAAATAACCTATTCGTCCGAACAAATAACTAAGT
CGTCAGAAAAAATAACAA
Found at i:153106 original size:103 final size:103
Alignment explanation
Indices: 152935--153154 Score: 395
Period size: 103 Copynumber: 2.1 Consensus size: 103
152925 ATATAACTTG
*
152935 TTCGTCCGAAAAAATCCAAATTCGTCCGAACAAACCGTGATTCGTCCGAATAAATAACCTATTTG
1 TTCGTCAGAAAAAATCCAAATTCGTCCGAACAAACCGTGATTCGTCCGAATAAATAACCTATTTG
*
153000 TCCGAACAAATAACTAATTCGTCCGAACAAATAACTAA
66 TCCGAACAAATAACTAAGTCGTCCGAACAAATAACTAA
*
153038 TTCGTCAGAAAAAATCCAAATTCGTCCGAACAAACCGTGATTTGTCCGAATAAATAACCTATTTG
1 TTCGTCAGAAAAAATCCAAATTCGTCCGAACAAACCGTGATTCGTCCGAATAAATAACCTATTTG
* *
153103 TCCGCACAAATAGCTAAGTCGTCCGAACAAATAACTAA
66 TCCGAACAAATAACTAAGTCGTCCGAACAAATAACTAA
153141 TTCGTCAGAAAAAA
1 TTCGTCAGAAAAAA
153155 AAACCTAATT
Statistics
Matches: 112, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
103 112 1.00
ACGTcount: A:0.40, C:0.23, G:0.13, T:0.24
Consensus pattern (103 bp):
TTCGTCAGAAAAAATCCAAATTCGTCCGAACAAACCGTGATTCGTCCGAATAAATAACCTATTTG
TCCGAACAAATAACTAAGTCGTCCGAACAAATAACTAA
Found at i:162280 original size:33 final size:33
Alignment explanation
Indices: 162243--163028 Score: 804
Period size: 33 Copynumber: 24.0 Consensus size: 33
162233 CAACTCCAGT
* * * *
162243 CAACTAATCAGAGTCAGTGATGACCACTACAGA
1 CAACTAGTCACAGTCAATGGTGACCACTACAGA
* * **
162276 CAACTAGTCATAAT-AAGTAATGACCACTACAGA
1 CAACTAGTCACAGTCAA-TGGTGACCACTACAGA
* *
162309 CAACAAGTCACAGTCAATGGTGACAACTACAGA
1 CAACTAGTCACAGTCAATGGTGACCACTACAGA
* * *
162342 CAACTAGTCAAAGTCAGTGATGACCAAC-ACAGA
1 CAACTAGTCACAGTCAATGGTGACC-ACTACAGA
*
162375 CAACTAATCACAGTCAATGGTGACCACTACAGA
1 CAACTAGTCACAGTCAATGGTGACCACTACAGA
*
162408 CAACTTGTCACAGTCAATGGTGACCACTACAGA
1 CAACTAGTCACAGTCAATGGTGACCACTACAGA
* * *
162441 CAACTAGTCACAGTCACTGGTGACCATTACAAA
1 CAACTAGTCACAGTCAATGGTGACCACTACAGA
** *
162474 CTTCTAG-CAACAGTCAATGGTGACTACTACAGA
1 CAACTAGTC-ACAGTCAATGGTGACCACTACAGA
* * ** *
162507 CAACTAGTCAAAGTCAGTCATGACCATTACAGA
1 CAACTAGTCACAGTCAATGGTGACCACTACAGA
* * *
162540 CAACTAGTCACAATCAATGGTGACTACTAAAGA
1 CAACTAGTCACAGTCAATGGTGACCACTACAGA
* * * * ** * **
162573 CATCTAGTCAAAGTTAGTAATGACAACTACATT
1 CAACTAGTCACAGTCAATGGTGACCACTACAGA
* * *
162606 CAACTAG--ATAGTCAA---AG-CCAGTA-ATGA
1 CAACTAGTCACAGTCAATGGTGACCACTACA-GA
* * * **
162633 CAACTACTCACTGTCAATGGTGAGCAAAACAGA
1 CAACTAGTCACAGTCAATGGTGACCACTACAGA
* *
162666 TAACTAGTCACAGTCAATAGTGACCACTACAGA
1 CAACTAGTCACAGTCAATGGTGACCACTACAGA
*
162699 CAACTAATCACAGTCAATGGTGACCACTACAGA
1 CAACTAGTCACAGTCAATGGTGACCACTACAGA
* * *
162732 CATCTAG-CTACAGTCAATGGTTACCACTATAGA
1 CAACTAGTC-ACAGTCAATGGTGACCACTACAGA
* *
162765 CAGCTAGCCACAGTCAATGGTGACCACTACAGA
1 CAACTAGTCACAGTCAATGGTGACCACTACAGA
* * *
162798 CAACTAATCATAGTCACTGGTGACCACTACAGA
1 CAACTAGTCACAGTCAATGGTGACCACTACAGA
* * *
162831 CAACTAGCCACAGTCAATAGTGACCACTACAAA
1 CAACTAGTCACAGTCAATGGTGACCACTACAGA
* * *
162864 CAGCTAATCACAGTCAATGGTGACCACTATAGA
1 CAACTAGTCACAGTCAATGGTGACCACTACAGA
* **
162897 CAACTAGTCAAAGT-AAGTAATGACCACTACAGA
1 CAACTAGTCACAGTCAA-TGGTGACCACTACAGA
*
162930 CAACTAGTCACAGTCAATGGTGACCACTAGAGA
1 CAACTAGTCACAGTCAATGGTGACCACTACAGA
*
162963 CAACTTGTCACAGTCAATGGTGACCACTACAGA
1 CAACTAGTCACAGTCAATGGTGACCACTACAGA
* *
162996 CAACTACTCACAGTCAATGATGACCACTACAGA
1 CAACTAGTCACAGTCAATGGTGACCACTACAGA
163029 TATCTAGCCA
Statistics
Matches: 611, Mismatches: 124, Indels: 36
0.79 0.16 0.05
Matches are distributed among these distances:
26 1 0.00
27 10 0.02
28 1 0.00
29 6 0.01
31 5 0.01
32 8 0.01
33 571 0.93
34 9 0.01
ACGTcount: A:0.39, C:0.25, G:0.16, T:0.20
Consensus pattern (33 bp):
CAACTAGTCACAGTCAATGGTGACCACTACAGA
Found at i:164336 original size:33 final size:33
Alignment explanation
Indices: 164299--164397 Score: 180
Period size: 33 Copynumber: 3.0 Consensus size: 33
164289 AGTCAATATA
164299 GTGACCACTACAGACAGCTAGCCACAGTCAATG
1 GTGACCACTACAGACAGCTAGCCACAGTCAATG
164332 GTGACCACTACAGACAGCTAGCCACAGTCAATG
1 GTGACCACTACAGACAGCTAGCCACAGTCAATG
* *
164365 GTGACCACTACAGACATCTAGTCACAGTCAATG
1 GTGACCACTACAGACAGCTAGCCACAGTCAATG
164398 ATTAATGTAC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 64 1.00
ACGTcount: A:0.33, C:0.29, G:0.20, T:0.17
Consensus pattern (33 bp):
GTGACCACTACAGACAGCTAGCCACAGTCAATG
Found at i:166897 original size:166 final size:164
Alignment explanation
Indices: 166322--167799 Score: 1369
Period size: 166 Copynumber: 9.0 Consensus size: 164
166312 CCAGAATATC
* * * ***
166322 TTTAAAGATTTTCTCTATATATTCCCATGTAAAAATTCAAACCGCC-ATCACGGCCCCACCCT-A
1 TTTAAAGATTTTCTCTATATATTCCTATGTAAAAATT--ATCCCCCAATTGTGGCCCCACCCTAA
* ** * * * * **
166385 CCACTAGGGACTGTGATTTTG--CAAACTTGAATTTACACTACCCGAGGATGCCTCTAC-ACAAG
64 CC-CCAGGGACCATGA-TTTGAACAAACTTGAATCTACACTACCTGAGGATGCTTCCACTTTAA-
* * * * *
166447 TTTAAGCTTTTCTGGCCAAATAGTCTTTAAAAAGAAGATT
126 TTTGAGCTTTTCTGGCCTAATAGTTTTTGAGAAG-AGATT
* * *
166487 TTTAAAGA-TTTCTCTATATATTTCCTATGTGAAAATCCATCCCCC-ATTGTGGCCTCACCCT-A
1 TTTAAAGATTTTCTCTATATA-TTCCTATGTAAAAAT-TATCCCCCAATTGTGGCCCCACCCTAA
* * * * * * **
166549 CCCC-TGGACTATTATTTAAACAAAC----A--TACGA-T--CTGGGGATGCTTCTACTCAAATT
64 CCCCAGGGACCATGATTTGAACAAACTTGAATCTAC-ACTACCTGAGGATGCTTCCACTTTAATT
* * * * *
166604 CGGGCTTTCCTGGTCTAATAG-TTTTGAAAAGAAGATTT
128 TGAGCTTTTCTGGCCTAATAGTTTTTGAGAAG-AGA-TT
* * *
166642 TTTAAAGATTTTCTCTATATA----TA---AAAATTTAT-CCCCAATTGTGGTCCCGCCCTAACC
1 TTTAAAGATTTTCTCTATATATTCCTATGTAAAAATTATCCCCCAATTGTGGCCCCACCCTAACC
* * * * * ****
166699 CCAGGGACCATAATTTGAACAAACTTGAATCTACATTATCTGAGGATGGTTACACGCCGATTTGA
66 CCAGGGACCATGATTTGAACAAACTTGAATCTACACTACCTGAGGATGCTTCCACTTTAATTTGA
* * *
166764 GC-TTTCTTGGCCAAAAAGTTTTT-AAAAGA-ATTTTT
131 GCTTTTC-TGGCCTAATAGTTTTTGAGAAGAGA---TT
* * * * *
166799 TTTAAAGATTTTCTCTATATATTCCTTTATAAAAATGTATTCCCCAATTGTGACCCCGCCCTAAC
1 TTTAAAGATTTTCTCTATATATTCCTATGTAAAAAT-TATCCCCCAATTGTGGCCCCACCCTAAC
** **
166864 CCTGGGGACCATGATTTGAACAAACTTGAATCTACACTACCTGAGGATGCTTCCACTCAAATTTG
65 CCCAGGGACCATGATTTGAACAAACTTGAATCTACACTACCTGAGGATGCTTCCACTTTAATTTG
* *
166929 AGCTTTCCTGGCCTAATAGTTTTTGAGAAAAAGATT
130 AGCTTTTCTGGCCTAATAGTTTTTGAG-AAGAGATT
* * *
166965 TTTAAAGATTTTTTCTATATATTCCTATGTAAAACATGATCCCCCTATTGTGGCCCCACCCT-AC
1 TTTAAAGATTTTCTCTATATATTCCTATGTAAAA-ATTATCCCCCAATTGTGGCCCCACCCTAAC
* *
167029 CCCTGGGGACCATGATTTGAACAAACTTGAATCTACACTACCTGAGGATGCTTCCATTTTAATTT
65 CCC-AGGGACCATGATTTGAACAAACTTGAATCTACACTACCTGAGGATGCTTCCACTTTAATTT
167094 GAGCTTTTCTGGCCTAATAGTTTTTGAG-A-AGATT
129 GAGCTTTTCTGGCCTAATAGTTTTTGAGAAGAGATT
* * * * * *
167128 TTTAAAGATTTTCTTTATATATTCCTATTTAAAACTTGACCCCCCCCCCCCATTTTGGCCCCACC
1 TTTAAAGATTTTCTCTATATATTCCTATGTAAAAATT-A-----TCCCCCAATTGTGGCCCCACC
*
167193 CT-ACCCCTAGGGACTATGATTTGAACAAACTTGAATCTACACTACCTGAGGATGCTTCCA-TTT
60 CTAACCCC-AGGGACCATGATTTGAACAAACTTGAATCTACACTACCTGAGGATGCTTCCACTTT
*
167256 CAATTTGAGCTTTTCTGGCCTCATAGTTTTTGAGAAGAAGATT
124 -AATTTGAGCTTTTCTGGCCTAATAGTTTTTGAGAAG-AGATT
* * ** *
167299 TTTAAAGATTTTCTCTATATATTCCTATGTAAAAATCCATTCCCTTATTGTGGCCCCACCAT-AC
1 TTTAAAGATTTTCTCTATATATTCCTATGTAAAAAT-TATCCCCCAATTGTGGCCCCACCCTAAC
* * *
167363 CACCAGGGACAATGATTTGAACAAACTTGAATTTACACTACTTGAGGATGCTTCCACTTTAATTT
65 C-CCAGGGACCATGATTTGAACAAACTTGAATCTACACTACCTGAGGATGCTTCCACTTTAATTT
167428 GAGCTTTTCTGGCCTAATAGTTTTTGAGAAGACGATT
129 GAGCTTTTCTGGCCTAATAGTTTTTGAGAAGA-GATT
* ** *
167465 TCTAAAGATTTTCTGAATATATTCCTATGTAAAACTTGATCCCCCAATTGTGGCCCCACCCT-AC
1 TTTAAAGATTTTCTCTATATATTCCTATGTAAAAATT-ATCCCCCAATTGTGGCCCCACCCTAAC
* * *
167529 ACCCAGGGACTATGATTTGAACAAACTTGAATCTACACTATCTGAGGATG-TTCCCATTTTAATT
65 -CCCAGGGACCATGATTTGAACAAACTTGAATCTACACTACCTGAGGATGCTT-CCACTTTAATT
* * *
167593 TGATCTTTTCTGGCCTGATACTTTTTGAGAAGACGATT
128 TGAGCTTTTCTGGCCTAATAGTTTTTGAGAAGA-GATT
* * ** * *
167631 TTTAAAGATTTTCTCTATAAATTCCTATGTAAAACTTGATCCCCCTCTTGTGGCCCCTCCCTACC
1 TTTAAAGATTTTCTCTATATATTCCTATGTAAAAATT-ATCCCCCAATTGTGGCCCCACCCTAAC
* * * **
167696 CCCGGGGACCATGATTTGAACAAATTTGAATCTACACTACCTGAGGATGCCTCCAC-ACAAGTTT
65 CCCAGGGACCATGATTTGAACAAACTTGAATCTACACTACCTGAGGATGCTTCCACTTTAA-TTT
* * * *
167760 AAGCTTTCCAGGCCGAATAGTTTTTGAGAAGAAGATT
129 GAGCTTTTCTGGCCTAATAGTTTTTGAGAAG-AGATT
167797 TTT
1 TTT
167800 GAAAAATACC
Statistics
Matches: 1106, Mismatches: 147, Indels: 119
0.81 0.11 0.09
Matches are distributed among these distances:
146 4 0.00
147 15 0.01
148 9 0.01
149 17 0.02
151 2 0.00
153 1 0.00
154 13 0.01
155 45 0.04
156 18 0.02
157 60 0.05
158 5 0.00
159 1 0.00
161 4 0.00
162 8 0.01
163 43 0.04
164 38 0.03
165 33 0.03
166 620 0.56
167 18 0.02
168 111 0.10
169 2 0.00
171 39 0.04
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (164 bp):
TTTAAAGATTTTCTCTATATATTCCTATGTAAAAATTATCCCCCAATTGTGGCCCCACCCTAACC
CCAGGGACCATGATTTGAACAAACTTGAATCTACACTACCTGAGGATGCTTCCACTTTAATTTGA
GCTTTTCTGGCCTAATAGTTTTTGAGAAGAGATT
Found at i:180497 original size:11 final size:12
Alignment explanation
Indices: 180483--180517 Score: 54
Period size: 11 Copynumber: 2.9 Consensus size: 12
180473 GGTCCACTCT
180483 AGTAAACCCAG-
1 AGTAAACCCAGA
180494 AGTAAACCCAGAA
1 AGTAAACCCAG-A
180507 AGTAAACCCAG
1 AGTAAACCCAG
180518 GGTTTAGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 11 0.50
13 11 0.50
ACGTcount: A:0.49, C:0.26, G:0.17, T:0.09
Consensus pattern (12 bp):
AGTAAACCCAGA
Found at i:180583 original size:2 final size:2
Alignment explanation
Indices: 180576--180614 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
180566 TACACAGTAA
180576 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
180615 AATGTAAATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:184540 original size:166 final size:166
Alignment explanation
Indices: 184262--184747 Score: 830
Period size: 166 Copynumber: 2.9 Consensus size: 166
184252 GGTGTGTGTC
* *
184262 TTTAAAAATCTTCTTCTCAAGAACCGGCCACTGCACCAGAAATGCCAATATTTACAAAAAAGCTT
1 TTTAAAAATCTTCTTCTCAAGAACC-G---CTGCATCAGAAATGCCAATATTTACACAAAAGCTT
* *
184327 GAATATATAGTGAAGATTCTAAATTGTAAAAATTGTGACCCCCGGACCAAAACTGGGGCCCCAGG
62 GTATACATAGTGAAGATTCTAAATTGTAAAAATTGTGACCCCCGGACCAAAACTGGGGCCCCAGG
*
184392 TGAGGTTCAAAGTTTAACATAGAAATGCATAGGAAAAATG
127 TGGGGTTCAAAGTTTAACATAGAAATGCATAGGAAAAATG
184432 TTTAAAAATCTTCTTCTCAAGAACCGCTGCATCAGAAATGCCAATATTTACACAAAAGCTTGTAT
1 TTTAAAAATCTTCTTCTCAAGAACCGCTGCATCAGAAATGCCAATATTTACACAAAAGCTTGTAT
**
184497 ACATAGTGAAGATTCTAAATTGTAAAAATTGTGACCCCCGGACCAAAACTGGGGCCCCAGAAAGG
66 ACATAGTGAAGATTCTAAATTGTAAAAATTGTGACCCCCGGACCAAAACTGGGGCCCCAG-GTGG
*
184562 GGTTGAAAGTTTAACATAGAAATGCATAGGAAAAATG
130 GGTTCAAAGTTTAACATAGAAATGCATAGGAAAAATG
* *
184599 TATAAAAATCTTCTTCTCAAGAACCGCTGCTTCAGAAATGCCAATATTTACAC-AAAGCTTGTAT
1 TTTAAAAATCTTCTTCTCAAGAACCGCTGCATCAGAAATGCCAATATTTACACAAAAGCTTGTAT
184663 ACATAGTGAAGATTCTAAATTGTAAAAATTGTGACCCCCGGACCAAAACTGGGGCCCCAGGTGGG
66 ACATAGTGAAGATTCTAAATTGTAAAAATTGTGACCCCCGGACCAAAACTGGGGCCCCAGGTGGG
184728 GTTCAAAGTTTAACATAGAA
131 GTTCAAAGTTTAACATAGAA
184748 GTTTATTGGG
Statistics
Matches: 302, Mismatches: 13, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
165 22 0.07
166 166 0.55
167 88 0.29
169 1 0.00
170 25 0.08
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (166 bp):
TTTAAAAATCTTCTTCTCAAGAACCGCTGCATCAGAAATGCCAATATTTACACAAAAGCTTGTAT
ACATAGTGAAGATTCTAAATTGTAAAAATTGTGACCCCCGGACCAAAACTGGGGCCCCAGGTGGG
GTTCAAAGTTTAACATAGAAATGCATAGGAAAAATG
Found at i:189825 original size:20 final size:20
Alignment explanation
Indices: 189802--189850 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
189792 AATAGATACC
*
189802 TTAATTTATTTTCATTTTCT
1 TTAATTTATTTTCATATTCT
189822 TTAATTTATTTTCATATTCT
1 TTAATTTATTTTCATATTCT
*
189842 TTATTTTAT
1 TTAATTTAT
189851 GTTGAAGATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.22, C:0.08, G:0.00, T:0.69
Consensus pattern (20 bp):
TTAATTTATTTTCATATTCT
Found at i:195765 original size:2 final size:2
Alignment explanation
Indices: 195758--195820 Score: 126
Period size: 2 Copynumber: 31.5 Consensus size: 2
195748 TTTAATTTAT
195758 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
195800 GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA G
195821 GCTATACTTT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 61 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:205494 original size:33 final size:33
Alignment explanation
Indices: 205452--205519 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
205442 GTAACTTGTA
205452 TGGAAGCATCTTCAGGTAGACTAGATTCAAGTT
1 TGGAAGCATCTTCAGGTAGACTAGATTCAAGTT
205485 TGGAAGCATCTTCAGGTAGACTAGATTCAAGTT
1 TGGAAGCATCTTCAGGTAGACTAGATTCAAGTT
205518 TG
1 TG
205520 TACAAATCAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (33 bp):
TGGAAGCATCTTCAGGTAGACTAGATTCAAGTT
Found at i:205842 original size:167 final size:169
Alignment explanation
Indices: 205513--205846 Score: 415
Period size: 169 Copynumber: 2.0 Consensus size: 169
205503 GACTAGATTC
* * * * *
205513 AAGTTTGTACAAATCATGGTCCCCGGGGGTAGGGTGGGGCCACAATGGATGGATGGATTTTTTCA
1 AAGTTTGTACAAATCATGGTCCCCAGGGGTAGGATGGGGCCACAATGGAGGGATGAATTTTTACA
* *
205578 TAAGAATGTATAGAGAAAATACTTTAAAAAATCTTCTTCTCAAAAACTATTAGATCAGAAAAGCT
66 TAAGAATATATAGAGAAAATACTTTAAAAAATCTTCTTCTCAAAAACTATTAGACCAGAAAAGCT
* *
205643 CAAATTAGAGTGGAAGCATCCTCAGATAGTGTAGATTTT
131 AAAATTAGAGTGGAAGAATCCTCAGATAGTGTAGATTTT
** * *
205682 AAGTTTGTTTAAATCATGGTCCCCAGGGGTAGGATGGGGCCACCATGGGGGGATGAATTTTTACA
1 AAGTTTGTACAAATCATGGTCCCCAGGGGTAGGATGGGGCCACAATGGAGGGATGAATTTTTACA
** * * * * * *
205747 TTGGAGTATATAGATAGAAT-CTTT-TAAAATCTTCTTCTTAAAAACTATTAGGCCAGAAAAGCT
66 TAAGAATATATAGAGAAAATACTTTAAAAAATCTTCTTCTCAAAAACTATTAGACCAGAAAAGCT
* *
205810 AAAACTT-GTGTGGAGGAATCCTCA-ATTAGTGTAGATT
131 AAAA-TTAGAGTGGAAGAATCCTCAGA-TAGTGTAGATT
205847 CAAGTTTTTT
Statistics
Matches: 140, Mismatches: 23, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
166 1 0.01
167 63 0.45
168 6 0.04
169 70 0.50
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.30
Consensus pattern (169 bp):
AAGTTTGTACAAATCATGGTCCCCAGGGGTAGGATGGGGCCACAATGGAGGGATGAATTTTTACA
TAAGAATATATAGAGAAAATACTTTAAAAAATCTTCTTCTCAAAAACTATTAGACCAGAAAAGCT
AAAATTAGAGTGGAAGAATCCTCAGATAGTGTAGATTTT
Found at i:215102 original size:21 final size:21
Alignment explanation
Indices: 215076--215122 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
215066 ACAGGGCAGG
* *
215076 GGTCAGTCTCCTAGTTACAGA
1 GGTCAGTCACCAAGTTACAGA
215097 GGTCAGTCACCAAGTTACAGA
1 GGTCAGTCACCAAGTTACAGA
*
215118 AGTCA
1 GGTCA
215123 ATCTGGTCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.23
Consensus pattern (21 bp):
GGTCAGTCACCAAGTTACAGA
Found at i:220889 original size:14 final size:14
Alignment explanation
Indices: 220870--220906 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
220860 CAGCATTTTG
*
220870 ACTGTTGGACTGGA
1 ACTGTTAGACTGGA
*
220884 ACTGTTAGATTGGA
1 ACTGTTAGACTGGA
220898 ACTGTTAGA
1 ACTGTTAGA
220907 ATCGACTGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.27, C:0.11, G:0.30, T:0.32
Consensus pattern (14 bp):
ACTGTTAGACTGGA
Found at i:225152 original size:15 final size:15
Alignment explanation
Indices: 225132--225162 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
225122 TTGAACACAT
225132 TGGGGGGGGGGGGTG
1 TGGGGGGGGGGGGTG
225147 TGGGGGGGGGGGGTG
1 TGGGGGGGGGGGGTG
225162 T
1 T
225163 TGTTGACCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.00, C:0.00, G:0.84, T:0.16
Consensus pattern (15 bp):
TGGGGGGGGGGGGTG
Found at i:228823 original size:2 final size:2
Alignment explanation
Indices: 228816--228862 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
228806 CAAGATAAAT
228816 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
228858 TC TC T
1 TC TC T
228863 ATTTAAACCT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:249129 original size:20 final size:20
Alignment explanation
Indices: 249104--249147 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
249094 CGCTTGATGT
249104 TTTGTGACATATCTCACCTG
1 TTTGTGACATATCTCACCTG
249124 TTTGTGACATATCTCACCTG
1 TTTGTGACATATCTCACCTG
249144 TTTG
1 TTTG
249148 ACCACTTTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.18, C:0.23, G:0.16, T:0.43
Consensus pattern (20 bp):
TTTGTGACATATCTCACCTG
Found at i:263135 original size:2 final size:2
Alignment explanation
Indices: 263128--263196 Score: 104
Period size: 2 Copynumber: 35.0 Consensus size: 2
263118 AGCTGATTTT
263128 GA GA GA GA GA GA GA -A GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
** *
263169 GA GA GA GA GA GA TT GA GA GA GA AA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
263197 TTATGCAGGT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
1 1 0.02
2 59 0.98
ACGTcount: A:0.51, C:0.00, G:0.46, T:0.03
Consensus pattern (2 bp):
GA
Found at i:264947 original size:32 final size:33
Alignment explanation
Indices: 264892--264953 Score: 108
Period size: 32 Copynumber: 1.9 Consensus size: 33
264882 AAATAAAACT
*
264892 AAAGTATTTGAAATGTAATTAATTACATTTATC
1 AAAGTAATTGAAATGTAATTAATTACATTTATC
264925 AAAGTAATTGAAA-GTAATTAATTACATTT
1 AAAGTAATTGAAATGTAATTAATTACATTT
264954 TTAAAAATCA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.45, C:0.05, G:0.10, T:0.40
Consensus pattern (33 bp):
AAAGTAATTGAAATGTAATTAATTACATTTATC
Found at i:264969 original size:28 final size:31
Alignment explanation
Indices: 264903--264971 Score: 81
Period size: 32 Copynumber: 2.3 Consensus size: 31
264893 AAGTATTTGA
*
264903 AATGTAATTAATTACATTTATCAAAGTAATTG
1 AATGTAATTAATTACATTTATCAAAG-AATTC
* *
264935 AAAGTAATTAATTACATTT-TTAAA-AA-TC
1 AATGTAATTAATTACATTTATCAAAGAATTC
264963 AATGTAATT
1 AATGTAATT
264972 GTATTTGCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 9 0.27
29 2 0.06
31 4 0.12
32 18 0.55
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.41
Consensus pattern (31 bp):
AATGTAATTAATTACATTTATCAAAGAATTC
Found at i:286327 original size:241 final size:243
Alignment explanation
Indices: 285898--286378 Score: 885
Period size: 241 Copynumber: 2.0 Consensus size: 243
285888 TAGCAGAGAA
285898 ACATGGAGAAGTTTGAGAAATCTGGGAGACTTTTATTACCGGTACTTGACAATGGCATAACAATA
1 ACATGGAGAAGTTTGAGAAATCTGGGAGACTTTTATT--C--TACTTGACAATGGCATAACAATA
*
285963 ATGAAGATATACATAGATTTAAACTTTAATAATTTAAATTAGATTAGAAACAAGTAAATATGATT
62 ATGAAGATATACACAGATTTAAACTTTAATAATTTAAATTAGATTAGAAACAAGTAAATATGATT
*
286028 AAAAAATAAAACAAATTCTAAAAATTGGAAAAAAAATTATCAAGTTTATTTAATTTAAATTATTT
127 AAAAAATAAAACAAATTCTAAAAATTGAAAAAAAAATTATCAAGTTTATTTAATTTAAATTATTT
286093 GATGTATTCATACATCTATAGATCAAATGTTTTGTAACTGTGTTACAAAGAG
192 GATGTATTCATACATCTATAGATCAAATGTTTTGTAACTGTGTTACAAAGAG
286145 ACATGGAGAAGTTTGAGAAATCTGGGAGACTTTTA-T-TACTTGACAATGGCATAACAATAATGA
1 ACATGGAGAAGTTTGAGAAATCTGGGAGACTTTTATTCTACTTGACAATGGCATAACAATAATGA
*
286208 AGATATACACAGATTTAAACTTTAATAATTTAAATTAGATTAGAAACAAGTCAATATGATTAAAA
66 AGATATACACAGATTTAAACTTTAATAATTTAAATTAGATTAGAAACAAGTAAATATGATTAAAA
286273 AATAAAACAAATTCTAAAAATTGAAAAAAAAATTATCAAGTTTATTTAATTTAAATTATTTGATG
131 AATAAAACAAATTCTAAAAATTGAAAAAAAAATTATCAAGTTTATTTAATTTAAATTATTTGATG
286338 TATTCATACATCTATAGATCAAATGTTTTGTAACTGTGTTA
196 TATTCATACATCTATAGATCAAATGTTTTGTAACTGTGTTA
286379 ACTAAAATGA
Statistics
Matches: 231, Mismatches: 3, Indels: 6
0.96 0.01 0.03
Matches are distributed among these distances:
241 195 0.84
246 1 0.00
247 35 0.15
ACGTcount: A:0.44, C:0.09, G:0.13, T:0.34
Consensus pattern (243 bp):
ACATGGAGAAGTTTGAGAAATCTGGGAGACTTTTATTCTACTTGACAATGGCATAACAATAATGA
AGATATACACAGATTTAAACTTTAATAATTTAAATTAGATTAGAAACAAGTAAATATGATTAAAA
AATAAAACAAATTCTAAAAATTGAAAAAAAAATTATCAAGTTTATTTAATTTAAATTATTTGATG
TATTCATACATCTATAGATCAAATGTTTTGTAACTGTGTTACAAAGAG
Found at i:290682 original size:40 final size:40
Alignment explanation
Indices: 290595--290964 Score: 573
Period size: 40 Copynumber: 9.2 Consensus size: 40
290585 TGTACATGTA
*
290595 ATGTATATTGGACAAGTTGTGATGTACGTTGGGCAAGTTGTG
1 ATGTATATTGGACAAGTTGTGATGT--GTTGGACAAGTTGTG
*
290637 ATGTATATTGGACAAATTGTGATGTGTTGGACAAGTTGTG
1 ATGTATATTGGACAAGTTGTGATGTGTTGGACAAGTTGTG
* * *
290677 GTGTATATTGGACAAGTTGTGATGTGCTGGTCAAGTTGTG
1 ATGTATATTGGACAAGTTGTGATGTGTTGGACAAGTTGTG
290717 ATGTATATTGGACAAGTTGTGATGTGTTGGACAAGTTGTG
1 ATGTATATTGGACAAGTTGTGATGTGTTGGACAAGTTGTG
290757 ATGTATATTGGACAAGTTGTGATGTGTTGGACAAGTTGTG
1 ATGTATATTGGACAAGTTGTGATGTGTTGGACAAGTTGTG
290797 ATGTATATTGGACAAGTTGTGATGTGTTGGACAAGTTGTG
1 ATGTATATTGGACAAGTTGTGATGTGTTGGACAAGTTGTG
290837 ATGTATATTGGACAAGTTGTGATGTGTTGGACAAGTTGTG
1 ATGTATATTGGACAAGTTGTGATGTGTTGGACAAGTTGTG
* * *
290877 ATGTATATTGGACAAATTGTGATATATATTGGACAAGTTGTG
1 ATGTATATTGGACAAGTTGTG--ATGTGTTGGACAAGTTGTG
** *
290919 ATG--TGCTGGACAAGTTGTGATGTATATTGGACAAGTTGTG
1 ATGTATATTGGACAAGTTGTGATG--TGTTGGACAAGTTGTG
290959 ATGTAT
1 ATGTAT
290965 GCTGACATGG
Statistics
Matches: 306, Mismatches: 16, Indels: 12
0.92 0.05 0.04
Matches are distributed among these distances:
38 2 0.01
40 259 0.85
42 45 0.15
ACGTcount: A:0.26, C:0.06, G:0.31, T:0.37
Consensus pattern (40 bp):
ATGTATATTGGACAAGTTGTGATGTGTTGGACAAGTTGTG
Found at i:292857 original size:47 final size:47
Alignment explanation
Indices: 292800--292891 Score: 166
Period size: 47 Copynumber: 2.0 Consensus size: 47
292790 GAAAATGTCC
*
292800 ATTAGTCCCATTAGGACAGTTCTAGTTATCAGATGAAATGTACTAGT
1 ATTAGTCCCATTAAGACAGTTCTAGTTATCAGATGAAATGTACTAGT
*
292847 ATTAGTCCCATTAAGACAGTTGTAGTTATCAGATGAAATGTACTA
1 ATTAGTCCCATTAAGACAGTTCTAGTTATCAGATGAAATGTACTA
292892 ATTTGATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (47 bp):
ATTAGTCCCATTAAGACAGTTCTAGTTATCAGATGAAATGTACTAGT
Found at i:293992 original size:30 final size:30
Alignment explanation
Indices: 293920--294692 Score: 766
Period size: 30 Copynumber: 25.3 Consensus size: 30
293910 CGTGCACTTC
* *
293920 CAGAAGATATCAGGTCAGTCCATCTATTTAAA
1 CAGAAGATATCAGGTCAGTCCATGTA-AT-AA
* * * * *
293952 TAACAAGATATCAGGTTACTCCATATAATAA
1 -CAGAAGATATCAGGTCAGTCCATGTAATAA
*
293983 CAAAAGATATCAGGTCAGTCCATGTAATAA
1 CAGAAGATATCAGGTCAGTCCATGTAATAA
294013 CAGAAGATATCAGGTCAGTCCATGTAATAA
1 CAGAAGATATCAGGTCAGTCCATGTAATAA
* *
294043 CAGAAGATATCAGGTTACTCCATGTAATAA
1 CAGAAGATATCAGGTCAGTCCATGTAATAA
* *
294073 CAGAAGATATCAGGTTACTCCATGTAATAA
1 CAGAAGATATCAGGTCAGTCCATGTAATAA
*
294103 CAGAAGTTATCAGGTCAGTCCATGTAATAA
1 CAGAAGATATCAGGTCAGTCCATGTAATAA
*
294133 CAGAAGATATCAGGTCAGTCCATGTAACAA
1 CAGAAGATATCAGGTCAGTCCATGTAATAA
294163 CAGAAGATATCAGGTCAGTCCATGTAATAA
1 CAGAAGATATCAGGTCAGTCCATGTAATAA
*
294193 CAGAAGATATCAGGTTAGTCCATGTAATAA
1 CAGAAGATATCAGGTCAGTCCATGTAATAA
* ** * *
294223 CAGAAGACATTGGGTCAGTCCAAGAAATAA
1 CAGAAGATATCAGGTCAGTCCATGTAATAA
*
294253 -AGAAGATATCAGGTTAGTCCATGTAATAA
1 CAGAAGATATCAGGTCAGTCCATGTAATAA
* ** * *
294282 CAGAAGACATTGGGTCAGTCCAAGAAATAA
1 CAGAAGATATCAGGTCAGTCCATGTAATAA
*
294312 -AGAAGATATCAGGTTAGTCCATGTAATAA
1 CAGAAGATATCAGGTCAGTCCATGTAATAA
* ** * *
294341 CAGAAGACATTGGGTCAGTCCAAGAAATAA
1 CAGAAGATATCAGGTCAGTCCATGTAATAA
* *
294371 -AGAAGATATCAGATCAATCCATGTAATAA
1 CAGAAGATATCAGGTCAGTCCATGTAATAA
* * *
294400 CAGAAGATATCAGATCAGTCCATATATTTAAA
1 CAGAAGATATCAGGTCAGTCCATGTA-AT-AA
* * * * *
294432 TAACAAGATATCAGGTTACTCCATATAATAA
1 -CAGAAGATATCAGGTCAGTCCATGTAATAA
* ** *
294463 CAGAAGACATTGGGTCAGTCCAAGTAATAA
1 CAGAAGATATCAGGTCAGTCCATGTAATAA
*
294493 -AGAAGATATCAGGTCAGTCCATGTAGTAA
1 CAGAAGATATCAGGTCAGTCCATGTAATAA
* * * * * *
294522 CAAAAGATATCAGGACTGATATCAGGTCAGTCCATGTA
1 CAGAAGATATCAGGTCAG-T-CCA--T--GT-AAT-AA
* *
294560 -ATAACATAAGGTATCAGGTCAGTCCATGTAATAA
1 CAGAAGAT-A--T--CAGGTCAGTCCATGTAATAA
* *
294594 CAGAAGATATTAGGTTAGTCCATGTAATAA
1 CAGAAGATATCAGGTCAGTCCATGTAATAA
* ** * *
294624 CAGAAGACATTGGGTCAGTCCAAGAAATAA
1 CAGAAGATATCAGGTCAGTCCATGTAATAA
*
294654 -AGAAGATATCAGGTCAATCCATGTAATAA
1 CAGAAGATATCAGGTCAGTCCATGTAATAA
294683 CAGAAGATAT
1 CAGAAGATAT
294693 ANATGTAAAA
Statistics
Matches: 608, Mismatches: 110, Indels: 47
0.79 0.14 0.06
Matches are distributed among these distances:
29 115 0.19
30 405 0.67
31 6 0.01
32 7 0.01
33 42 0.07
34 3 0.00
35 7 0.01
36 4 0.01
37 6 0.01
38 3 0.00
40 3 0.00
41 1 0.00
42 6 0.01
ACGTcount: A:0.42, C:0.16, G:0.19, T:0.24
Consensus pattern (30 bp):
CAGAAGATATCAGGTCAGTCCATGTAATAA
Found at i:294556 original size:42 final size:42
Alignment explanation
Indices: 294497--294577 Score: 135
Period size: 42 Copynumber: 1.9 Consensus size: 42
294487 TAATAAAGAA
*
294497 GATATCAGGTCAGTCCATGTAGTAACAAAAGATATCAGGACT
1 GATATCAGGTCAGTCCATGTAATAACAAAAGATATCAGGACT
* *
294539 GATATCAGGTCAGTCCATGTAATAACATAAGGTATCAGG
1 GATATCAGGTCAGTCCATGTAATAACAAAAGATATCAGG
294578 TCAGTCCATG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (42 bp):
GATATCAGGTCAGTCCATGTAATAACAAAAGATATCAGGACT
Found at i:294641 original size:161 final size:164
Alignment explanation
Indices: 294375--294692 Score: 471
Period size: 161 Copynumber: 2.0 Consensus size: 164
294365 AAATAAAGAA
*
294375 GATATCAGATCAATCCATGTAATAACAGAAGATATCAGATCAGTCCATATATTTAAATAACAAGA
1 GATATCAGATCAATCCATGTAATAACAGAAGATATCAGATCAGTCCATATATATAAATAACAAGA
*
294440 TATCAGGTTACTCCATATAATAACAGAAGACATTGGGTCAGTCCAAGTAATAAAGAAGATATCAG
66 TATCAGGTTACTCCATATAATAACAGAAGACATTGGGTCAGTCCAAGAAATAAAGAAGATATCAG
* *
294505 GTCAGTCCATGTAGTAACAAAAGATATCAGGACT
131 GTCAATCCATGTAATAACAAAAGATATCAGGACT
* * * * * * * *
294539 GATATCAGGTCAGTCCATGTAATAACATAAGGTATCAGGTCAGTCCATGTA-AT-AA-CAGAAGA
1 GATATCAGATCAATCCATGTAATAACAGAAGATATCAGATCAGTCCATATATATAAATAACAAGA
* * *
294601 TATTAGGTTAGTCCATGTAATAACAGAAGACATTGGGTCAGTCCAAGAAATAAAGAAGATATCAG
66 TATCAGGTTACTCCATATAATAACAGAAGACATTGGGTCAGTCCAAGAAATAAAGAAGATATCAG
*
294666 GTCAATCCATGTAATAACAGAAGATAT
131 GTCAATCCATGTAATAACAAAAGATAT
294693 ANATGTAAAA
Statistics
Matches: 138, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
161 90 0.65
162 2 0.01
163 1 0.01
164 45 0.33
ACGTcount: A:0.42, C:0.15, G:0.18, T:0.25
Consensus pattern (164 bp):
GATATCAGATCAATCCATGTAATAACAGAAGATATCAGATCAGTCCATATATATAAATAACAAGA
TATCAGGTTACTCCATATAATAACAGAAGACATTGGGTCAGTCCAAGAAATAAAGAAGATATCAG
GTCAATCCATGTAATAACAAAAGATATCAGGACT
Found at i:300620 original size:4 final size:4
Alignment explanation
Indices: 300613--300661 Score: 62
Period size: 4 Copynumber: 12.2 Consensus size: 4
300603 ACAGACAGAG
* * * *
300613 GGAC GGAC GGAG GGAC GGAC GGAC AGAC GGAC GGAC AGAC TGAC GGAC
1 GGAC GGAC GGAC GGAC GGAC GGAC GGAC GGAC GGAC GGAC GGAC GGAC
300661 G
1 G
300662 CAGAGGAAAG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
4 38 1.00
ACGTcount: A:0.29, C:0.22, G:0.47, T:0.02
Consensus pattern (4 bp):
GGAC
Found at i:300625 original size:12 final size:12
Alignment explanation
Indices: 300600--300647 Score: 60
Period size: 12 Copynumber: 4.0 Consensus size: 12
300590 AAACTGAAGT
* *
300600 GGGACAGACAGA
1 GGGACGGACGGA
300612 GGGACGGACGGA
1 GGGACGGACGGA
300624 GGGACGGACGGA
1 GGGACGGACGGA
**
300636 CAGACGGACGGA
1 GGGACGGACGGA
300648 CAGACTGACG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.31, C:0.19, G:0.50, T:0.00
Consensus pattern (12 bp):
GGGACGGACGGA
Found at i:301094 original size:15 final size:16
Alignment explanation
Indices: 301071--301101 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
301061 ATATATTATG
301071 TAAACCAATATCATAT
1 TAAACCAATATCATAT
301087 TAAA-CAATATCATAT
1 TAAACCAATATCATAT
301102 CATATTATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (16 bp):
TAAACCAATATCATAT
Found at i:301101 original size:20 final size:20
Alignment explanation
Indices: 301078--301116 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
301068 ATGTAAACCA
301078 ATATCATATTAAACAATATC
1 ATATCATATTAAACAATATC
*
301098 ATATCATATTATACAATAT
1 ATATCATATTAAACAATAT
301117 TCTATGTTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.38
Consensus pattern (20 bp):
ATATCATATTAAACAATATC
Found at i:301180 original size:50 final size:50
Alignment explanation
Indices: 301041--301201 Score: 145
Period size: 50 Copynumber: 3.3 Consensus size: 50
301031 CAAAATATCC
* *
301041 TACAATTTCATGTCATAT-A-AATATATTATGTAAACCAATATCATATTAA
1 TACAATATCATATCATATAATAATATATTATGTAAACCAATATCATA-TAA
* *
301090 -ACAATATCATATCATATTATACA-ATATTCTATGT-TA-CAATATCATATAA
1 TACAATATCATATCATATAATA-ATATA-T-TATGTAAACCAATATCATATAA
* * * * * *
301139 TACCATTTTATGTGATATAATAATATATTATGTAAACCAATATCATATCA
1 TACAATATCATATCATATAATAATATATTATGTAAACCAATATCATATAA
*
301189 TACAATATAATAT
1 TACAATATCATAT
301202 ATAAAACAAG
Statistics
Matches: 88, Mismatches: 15, Indels: 17
0.73 0.12 0.14
Matches are distributed among these distances:
48 20 0.23
49 7 0.08
50 53 0.60
51 3 0.03
52 5 0.06
ACGTcount: A:0.45, C:0.12, G:0.04, T:0.39
Consensus pattern (50 bp):
TACAATATCATATCATATAATAATATATTATGTAAACCAATATCATATAA
Found at i:301656 original size:56 final size:56
Alignment explanation
Indices: 301590--301704 Score: 194
Period size: 56 Copynumber: 2.1 Consensus size: 56
301580 TTTTAAATAT
301590 TTAAGGTCTTCCGTTTCAAACGGAAGACCTTATAGTTTTCGTACAGTTTCTTATTA
1 TTAAGGTCTTCCGTTTCAAACGGAAGACCTTATAGTTTTCGTACAGTTTCTTATTA
* * * *
301646 TTAAGGTCTTCCGTTTCCAACGGCAGACCTTATTGTTTTCGTACTGTTTCTTATTA
1 TTAAGGTCTTCCGTTTCAAACGGAAGACCTTATAGTTTTCGTACAGTTTCTTATTA
301702 TTA
1 TTA
301705 TTTTTTTCCA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.22, C:0.19, G:0.16, T:0.43
Consensus pattern (56 bp):
TTAAGGTCTTCCGTTTCAAACGGAAGACCTTATAGTTTTCGTACAGTTTCTTATTA
Found at i:302522 original size:59 final size:57
Alignment explanation
Indices: 302450--302620 Score: 199
Period size: 53 Copynumber: 3.0 Consensus size: 57
302440 TCGTATCTAG
* * *
302450 TTATTAAGGTCTTCCGTTTCCAACGAAAGACCTTAAAGTTTTTGTACAGTTTCTTAT
1 TTATTAAGGTCTTCCGTTTCCAACGAAAGACCTTATAGTTTTCGTACTGTTTCTTAT
* * * *
302507 TATCATTAAGGTCTTCCGGTTGCAACGGAAGACCTTATTGTTTTCGTACTGTTTC----
1 T-T-ATTAAGGTCTTCCGTTTCCAACGAAAGACCTTATAGTTTTCGTACTGTTTCTTAT
* *
302562 TTATTAAGGTCTTCGGTTTCCAAC-AGAAGACCTTATAGTTTTCGTACTGTTTATTAT
1 TTATTAAGGTCTTCCGTTTCCAACGA-AAGACCTTATAGTTTTCGTACTGTTTCTTAT
302619 TT
1 TT
302621 TTTTTTTCCA
Statistics
Matches: 94, Mismatches: 13, Indels: 14
0.78 0.11 0.12
Matches are distributed among these distances:
53 44 0.47
54 1 0.01
55 1 0.01
57 3 0.03
58 1 0.01
59 44 0.47
ACGTcount: A:0.23, C:0.18, G:0.16, T:0.43
Consensus pattern (57 bp):
TTATTAAGGTCTTCCGTTTCCAACGAAAGACCTTATAGTTTTCGTACTGTTTCTTAT
Found at i:303775 original size:436 final size:435
Alignment explanation
Indices: 303052--304040 Score: 1514
Period size: 436 Copynumber: 2.3 Consensus size: 435
303042 TGCAATAAAA
*** * *
303052 TCAAGAAAAAGGGGCTGGCCCCTTTTTTTAGGGGCCAAGACACTTGTAAACTCTATTACA-A-A-
1 TCAAGAAAAA-GGGCTGGCCCCTTAAATTAGGGGCCAAGACACTCGTAAAATCTATTACACATAC
* * *
303114 --T---AAC-TTAAA-ATGTTGTAATGCATTGTAGAAGCAAAGTTGTTGATCGTAACAATATCTA
65 CTTAAAAACGATAAAGATTTTGTAATGCATTATAGAAGCAAAGTTGTTGATCGTAACAATATCTA
* *
303172 TCAGAAAAAATCATTGCCACGCCCATTTATTACGTAATTAGGGATTTTAAGGAGCCAAAGTACTT
130 TCAGAAAAAATCATTGCCACGCCCATTTATTACGTAATTAGGGATTTTAAGGAGACAAAGTACTA
*
303237 AAACTTTGACGCAATATATCTAGAAAAGGAGACATATTTTGTTAAGCATTGTAGAAGAGAAAATG
195 AAACTTTGACGCAATATATCTAGAAAAGGAGACATACTTTGTTAAGCATTGTAGAAGAGAAAATG
*
303302 TTTGCATAAATGATTCTAATCGATTCCATTTATCAAAGCACCAAAGTCTGTCCCCATTAAGGATC
260 TTTGCATAAATAATTCTAATCGATTCCATTTATCAAAGCACCAAAGTCTGTCCCCATTAAGGATC
* *
303367 TAGAGGTCTGTCCCGTAAACTATTCAATCATTTGTATCTAAAAAATGAACAACAATTCTAGATAA
325 TAGAGGACTGGCCCGTAAACTATTCAATCATTTGTATCTAAAAAATGAACAACAATTCTAGATAA
* * *
303432 GTGTAAGAACAAAAAATGTTAGTATTCGTGAGACCTTTCGAATGAAC
390 GTATAAGAACAAAAAATGTTAGTATCCATG-GACCTTTCGAATGAAC
* * * *
303479 TCAAGAAAGAGGGGCTGGTCCCTTAAATTAGGGGTCAAGACACTCGTAAAGTCTATTACACATAC
1 TCAAGAAA-AAGGGCTGGCCCCTTAAATTAGGGGCCAAGACACTCGTAAAATCTATTACACATAC
303544 CTTAAAAA-GATAAAGATTTTGTAATGCATTATAGAAGCAAAGTTGTTGATCGTAACAATATCTA
65 CTTAAAAACGATAAAGATTTTGTAATGCATTATAGAAGCAAAGTTGTTGATCGTAACAATATCTA
** * *
303608 TCAGGTAAAATCATTGCCACGCCCATTTATTACGTAATTAGGGATTTTTAGGGGACAAAGTACTA
130 TCAGAAAAAATCATTGCCACGCCCATTTATTACGTAATTAGGGATTTTAAGGAGACAAAGTACTA
* *
303673 AAACTTTGACGCAATATATTTAGAAAAGGAGACATACTTTGTTAAGCATTGTATAAGAGAAAATG
195 AAACTTTGACGCAATATATCTAGAAAAGGAGACATACTTTGTTAAGCATTGTAGAAGAGAAAATG
*
303738 TTTGCATTAATAATTCTAATCGATTCCATTTATCAAAGCACCAAAGTCTGTCCCCATTAAGGATC
260 TTTGCATAAATAATTCTAATCGATTCCATTTATCAAAGCACCAAAGTCTGTCCCCATTAAGGATC
* * *
303803 TAGAGGACTGGCCCGTAAACTATTCAATCATTTGTATCTCAAAAATGAACAACAATTTTTGATAA
325 TAGAGGACTGGCCCGTAAACTATTCAATCATTTGTATCTAAAAAATGAACAACAATTCTAGATAA
* **
303868 GTATAAGAACAAAAAATGTTAGTGTCCATGGATGTTTCGAATGAAC
390 GTATAAGAACAAAAAATGTTAGTATCCATGGACCTTTCGAATGAAC
*
303914 TCAAGAAAAAGGGCTGGCCCCTTAAATTAGGGGCCATGACACTCGTAAAATCTATTACACATACC
1 TCAAGAAAAAGGGCTGGCCCCTTAAATTAGGGGCCAAGACACTCGTAAAATCTATTACACATACC
* * * * *
303979 TTAAAAACGATCAAGATTTTGTAATGCATTACAGAAACAAAGTTGTTGGTCGTAGCAATATC
66 TTAAAAACGATAAAGATTTTGTAATGCATTATAGAAGCAAAGTTGTTGATCGTAACAATATC
304041 AGTTTGTAAT
Statistics
Matches: 507, Mismatches: 43, Indels: 16
0.90 0.08 0.03
Matches are distributed among these distances:
427 50 0.10
428 2 0.00
429 1 0.00
432 1 0.00
434 59 0.12
435 77 0.15
436 317 0.63
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.29
Consensus pattern (435 bp):
TCAAGAAAAAGGGCTGGCCCCTTAAATTAGGGGCCAAGACACTCGTAAAATCTATTACACATACC
TTAAAAACGATAAAGATTTTGTAATGCATTATAGAAGCAAAGTTGTTGATCGTAACAATATCTAT
CAGAAAAAATCATTGCCACGCCCATTTATTACGTAATTAGGGATTTTAAGGAGACAAAGTACTAA
AACTTTGACGCAATATATCTAGAAAAGGAGACATACTTTGTTAAGCATTGTAGAAGAGAAAATGT
TTGCATAAATAATTCTAATCGATTCCATTTATCAAAGCACCAAAGTCTGTCCCCATTAAGGATCT
AGAGGACTGGCCCGTAAACTATTCAATCATTTGTATCTAAAAAATGAACAACAATTCTAGATAAG
TATAAGAACAAAAAATGTTAGTATCCATGGACCTTTCGAATGAAC
Found at i:317088 original size:2 final size:2
Alignment explanation
Indices: 317081--317109 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
317071 TTAAAAGCAT
317081 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
317110 TTTTCAGTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:321519 original size:2 final size:2
Alignment explanation
Indices: 321512--321537 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
321502 ACACATGAAT
321512 GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA
321538 ATATGGGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:322726 original size:4 final size:4
Alignment explanation
Indices: 322717--322741 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
322707 ACAGAGTAGG
322717 TCAT TCAT TCAT TCAT TCAT TCAT T
1 TCAT TCAT TCAT TCAT TCAT TCAT T
322742 TTCTCTCTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (4 bp):
TCAT
Found at i:322805 original size:2 final size:2
Alignment explanation
Indices: 322743--322786 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
322733 TCATTCATTT
322743 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
322785 TC
1 TC
322787 CACTGAGACT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:322815 original size:21 final size:19
Alignment explanation
Indices: 322776--322813 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
322766 CTCTCTCTCT
322776 CTCTCTCTCTCCACTGAGA
1 CTCTCTCTCTCCACTGAGA
322795 CTCTCTCTCTCCACTGAGA
1 CTCTCTCTCTCCACTGAGA
322814 GAGTACGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.16, C:0.42, G:0.11, T:0.32
Consensus pattern (19 bp):
CTCTCTCTCTCCACTGAGA
Found at i:323438 original size:33 final size:33
Alignment explanation
Indices: 323401--323467 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
323391 ATTCAACATG
323401 ACACATCCATCCCTCTTAAACCTAAGACTTTTC
1 ACACATCCATCCCTCTTAAACCTAAGACTTTTC
323434 ACACATCCATCCCTCTTAAACCTAAGACTTTTC
1 ACACATCCATCCCTCTTAAACCTAAGACTTTTC
323467 A
1 A
323468 ACAAAACATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.31, C:0.36, G:0.03, T:0.30
Consensus pattern (33 bp):
ACACATCCATCCCTCTTAAACCTAAGACTTTTC
Found at i:327135 original size:33 final size:33
Alignment explanation
Indices: 327098--327161 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
327088 ACATAGGGCT
327098 ATGCCAAAAACGAAAATGATTTATACGTATAAA
1 ATGCCAAAAACGAAAATGATTTATACGTATAAA
327131 ATGCCAAAAACGAAAATGATTTATACGTATA
1 ATGCCAAAAACGAAAATGATTTATACGTATA
327162 TATTGATAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.25
Consensus pattern (33 bp):
ATGCCAAAAACGAAAATGATTTATACGTATAAA
Found at i:327499 original size:17 final size:18
Alignment explanation
Indices: 327475--327510 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
327465 AACGCACTTA
*
327475 ATTTTTTTCAAATTGCGT
1 ATTTTTTTCAAAGTGCGT
327493 ATTTTTTTCAAAGTGCGT
1 ATTTTTTTCAAAGTGCGT
327511 TGCCACAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.11, G:0.14, T:0.53
Consensus pattern (18 bp):
ATTTTTTTCAAAGTGCGT
Found at i:330715 original size:12 final size:12
Alignment explanation
Indices: 330698--330722 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
330688 ACAGTCCGTG
330698 GCACTAATACTA
1 GCACTAATACTA
330710 GCACTAATACTA
1 GCACTAATACTA
330722 G
1 G
330723 TATTTTGGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.24, G:0.12, T:0.24
Consensus pattern (12 bp):
GCACTAATACTA
Found at i:332863 original size:170 final size:166
Alignment explanation
Indices: 332420--332863 Score: 495
Period size: 170 Copynumber: 2.6 Consensus size: 166
332410 CCTATGTCCT
*
332420 GAACCCCTGACCCAGGGGCCATGAATTTCAC-ATTTTAGGTAGAGGAG-TCAGTGGACATCATAG
1 GAACCCCTGACCCAGGGGCCATGAATTTCACAATTTT-GGTAGAGG-GCTCA-TGGACATCATAA
* * * * *
332483 CCATGCATTCAGTTTTTTGCCCACATGTTTGGTAGTA-AGAAGAGATTTTTTTAAGATTTAATAC
63 CCATGCATTCAGTTTTTT-CTCACATGTATGGGAGTAGAGAAGAGAATTTTCTAAGATTTAATAC
* *
332547 ATTTTTACTATATGGCCATATTGGCCCCACCCTAGAGCCT
127 ATTTTTACTATATGGCCATATTGGCCCCACACTAGAGCCA
* * * * *
332587 GAACCCCTAACCCAGGGGTCATGAATTTCTCAATTTTAGTAGAGGGCTTCATGGACATCATAATC
1 GAACCCCTGACCCAGGGGCCATGAATTTCACAATTTTGGTAGAGGGC-TCATGGACATCATAACC
* * * * *
332652 ATGCATTTAGGTGTTTTTTTTACAAATATATATGGGAGAAGAG-A-AG-ATTTTCTAAGATTTAA
65 ATGCATTCA---GTTTTTTCT-C--ACATGTATGGGAGTAGAGAAGAGAATTTTCTAAGATTTAA
332714 TACATTTTTACTATATGGCCATATTGGCCCCACACTAGAGCCA
124 TACATTTTTACTATATGGCCATATTGGCCCCACACTAGAGCCA
* * * *
332757 GAACCCCTGACCCAGAGACCATGAATATCACAATTTTGGTAGAGGGCCTCATGGGCATCATAACC
1 GAACCCCTGACCCAGGGGCCATGAATTTCACAATTTTGGTAGAGGG-CTCATGGACATCATAACC
** * *
332822 ATGCAACCAGTTTTCTCATCACATGTGTGGGAGTAGAGAAGA
65 ATGCATTCAGTTTTTTC-TCACATGTATGGGAGTAGAGAAGA
332864 AGATGGTAGA
Statistics
Matches: 227, Mismatches: 36, Indels: 28
0.78 0.12 0.10
Matches are distributed among these distances:
165 14 0.06
166 2 0.01
167 63 0.28
168 9 0.04
170 123 0.54
171 3 0.01
172 11 0.05
173 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (166 bp):
GAACCCCTGACCCAGGGGCCATGAATTTCACAATTTTGGTAGAGGGCTCATGGACATCATAACCA
TGCATTCAGTTTTTTCTCACATGTATGGGAGTAGAGAAGAGAATTTTCTAAGATTTAATACATTT
TTACTATATGGCCATATTGGCCCCACACTAGAGCCA
Found at i:333078 original size:90 final size:90
Alignment explanation
Indices: 332925--333103 Score: 340
Period size: 90 Copynumber: 2.0 Consensus size: 90
332915 AATATATATG
332925 GGAGTATAGAAAAAGATTTTCTAAGATTTAATACATTTTGACTATATGGCCATATTGGCCCCACC
1 GGAGTATAGAAAAAGATTTTCTAAGATTTAATACATTTTGACTATATGGCCATATTGGCCCCACC
*
332990 CTAGAGCCTGAACCCCTAACCCAGT
66 CTAGAGCCAGAACCCCTAACCCAGT
333015 GGAGTATAGAAAAAGATTTTCTAAGATTTAATACATTTTGACTATATGGCCATATTGGCCCCACC
1 GGAGTATAGAAAAAGATTTTCTAAGATTTAATACATTTTGACTATATGGCCATATTGGCCCCACC
*
333080 CTAGAGCCAGAACCCCTGACCCAG
66 CTAGAGCCAGAACCCCTAACCCAG
333104 GGGCCATGAA
Statistics
Matches: 87, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
90 87 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.27
Consensus pattern (90 bp):
GGAGTATAGAAAAAGATTTTCTAAGATTTAATACATTTTGACTATATGGCCATATTGGCCCCACC
CTAGAGCCAGAACCCCTAACCCAGT
Found at i:334308 original size:2 final size:2
Alignment explanation
Indices: 334301--334348 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
334291 GAGATACTGA
334301 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
334343 AG AG AG
1 AG AG AG
334349 CTACTCCATT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:335157 original size:2 final size:2
Alignment explanation
Indices: 335150--335207 Score: 116
Period size: 2 Copynumber: 29.0 Consensus size: 2
335140 GAGATACTGA
335150 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
335192 AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG
335208 CTACTCCATT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 56 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:339427 original size:66 final size:65
Alignment explanation
Indices: 339264--339899 Score: 708
Period size: 66 Copynumber: 9.7 Consensus size: 65
339254 GAAACAATGA
*
339264 AAAATAG-AGGGGGTTCAATATATCGCGGCCATAATATTTTGAACCCCC-CTCCAATAGCAA-TG
1 AAAATAGTAGGGGGTTCAAAATATCGCGGCCATAATATTTTGAACCCCCTCTCCAATAG-AATTG
*
339326 A
65 G
*
339327 AAAATAG-AGGGAGGTTCAAAATATCGCGGCCATAATACTTTGAACCCCCTCTCCAATGAGAATT
1 AAAATAGTAGGG-GGTTCAAAATATCGCGGCCATAATATTTTGAACCCCCTCTCCAAT-AGAATT
339391 GG
64 GG
* ** *
339393 AACAGGGTAGGGGGTTCAATATATCGCGGCCATAATATTTTGAACCCCCTCTCCAATAGCAA-TG
1 AAAATAGTAGGGGGTTCAAAATATCGCGGCCATAATATTTTGAACCCCCTCTCCAATAG-AATTG
*
339457 A
65 G
* * * *
339458 AAAATAG-AGGGGGGTTCAAAATATCGCAGCTATAATATTTTGAACCCCCTATCCAATGGGAATT
1 AAAATAGTA-GGGGGTTCAAAATATCGCGGCCATAATATTTTGAACCCCCTCTCCAAT-AGAATT
339522 GG
64 GG
* * *
339524 AAAA-AGGTAGGGGGTTCAATATATCGCAGCCATAATATTTTGAACCCCCTCTCTAATAGCAA-T
1 AAAATA-GTAGGGGGTTCAAAATATCGCGGCCATAATATTTTGAACCCCCTCTCCAATAG-AATT
339587 -G
64 GG
* ** * * *
339588 AAAAAAAAAGGGGGGTTCAATATATC-CGACCATAACATTTTGAACCCCCTCTCCAA-ACGCAA-
1 AAAATAGTA-GGGGGTTCAAAATATCGCGGCCATAATATTTTGAACCCCCTCTCCAATA-G-AAT
*
339650 TGA
63 TGG
* *
339653 AAAATAG-AGGGGGTTCAAAATATCGTGGCCATAATATTTTGAACCCCCTCTCCAATGGGAATTG
1 AAAATAGTAGGGGGTTCAAAATATCGCGGCCATAATATTTTGAACCCCCTCTCCAAT-AGAATTG
339717 G
65 G
*
339718 AAAA-AGGTAGGGGGTTCAAAATATCGTGGCCATAATATTTTGAACCCCCTCTCCAATAGGAATT
1 AAAATA-GTAGGGGGTTCAAAATATCGCGGCCATAATATTTTGAACCCCCTCTCCAATA-GAATT
339782 GG
64 GG
* * *
339784 AAAAATGGTAGGGGGTCCAAAATATCGCGGCCATAATATTTTGAACCCCCTCTCCAATGGGAATT
1 -AAAATAGTAGGGGGTTCAAAATATCGCGGCCATAATATTTTGAACCCCCTCTCCAAT-AGAATT
339849 GTAG
64 G--G
* * *
339853 AAAAATAG-AGGGGGGTTGAAAATATCGCGGCCATAAAATATTGAACC
1 -AAAATAGTA-GGGGGTTCAAAATATCGCGGCCATAATATTTTGAACC
339900 ATTTTATGGG
Statistics
Matches: 496, Mismatches: 48, Indels: 52
0.83 0.08 0.09
Matches are distributed among these distances:
63 27 0.05
64 104 0.21
65 96 0.19
66 163 0.33
67 64 0.13
68 1 0.00
69 41 0.08
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (65 bp):
AAAATAGTAGGGGGTTCAAAATATCGCGGCCATAATATTTTGAACCCCCTCTCCAATAGAATTGG
Found at i:339504 original size:131 final size:131
Alignment explanation
Indices: 339271--339899 Score: 815
Period size: 131 Copynumber: 4.8 Consensus size: 131
339261 TGAAAAATAG
339271 AGGGGGTTCAATATATCGCGGCCATAATATTTTGAACCCCC-CTCCAATAGCAATGAAAAATAGA
1 AGGGGGTTCAATATATCGCGGCCATAATATTTTGAACCCCCTCTCCAATAGCAATGAAAAATAGA
* * * *
339335 GGGAGGTTCAAAATATCGCGGCCATAATACTTTGAACCCCCTCTCCAATGA-GAATTGGAACAGG
66 GGGGGGTTCAAAATATCGCGGCCATAATATTTTGAACCCCCTCTCCAAT-ACGAATTGGAAAATG
339399 GT
130 GT
339401 AGGGGGTTCAATATATCGCGGCCATAATATTTTGAACCCCCTCTCCAATAGCAATGAAAAATAGA
1 AGGGGGTTCAATATATCGCGGCCATAATATTTTGAACCCCCTCTCCAATAGCAATGAAAAATAGA
* * * ** *
339466 GGGGGGTTCAAAATATCGCAGCTATAATATTTTGAACCCCCTATCCAATGGGAATTGGAAAAAGG
66 GGGGGGTTCAAAATATCGCGGCCATAATATTTTGAACCCCCTCTCCAATACGAATTGGAAAATGG
339531 T
131 T
* * * *
339532 AGGGGGTTCAATATATCGCAGCCATAATATTTTGAACCCCCTCTCTAATAGCAATGAAAAAAAAA
1 AGGGGGTTCAATATATCGCGGCCATAATATTTTGAACCCCCTCTCCAATAGCAATGAAAAATAGA
* * * * *
339597 GGGGGGTTCAATATATC-CGACCATAACATTTTGAACCCCCTCTCCAA-ACGCAA-TGAAAAATA
66 GGGGGGTTCAAAATATCGCGGCCATAATATTTTGAACCCCCTCTCCAATACG-AATTGGAAAATG
339659 G-
130 GT
* * * * *
339660 AGGGGGTTCAAAATATCGTGGCCATAATATTTTGAACCCCCTCTCCAATGGGAATTGGAAAA-AG
1 AGGGGGTTCAATATATCGCGGCCATAATATTTTGAACCCCCTCTCCAATAGCAA-TGAAAAATAG
* *
339724 -GTAGGGGGTTCAAAATATCGTGGCCATAATATTTTGAACCCCCTCTCCAATAGGAATTGGAAAA
65 AG--GGGGGTTCAAAATATCGCGGCCATAATATTTTGAACCCCCTCTCCAATACGAATTGG-AAA
339788 ATGGT
127 ATGGT
* * * *
339793 AGGGGGTCCAAAATATCGCGGCCATAATATTTTGAACCCCCTCTCCAATGGGAATTGTAGAAAAA
1 AGGGGGTTCAATATATCGCGGCCATAATATTTTGAACCCCCTCTCCAATAGCAA---T-GAAAAA
* * *
339858 TAGAGGGGGGTTGAAAATATCGCGGCCATAAAATATTGAACC
62 TAGAGGGGGGTTCAAAATATCGCGGCCATAATATTTTGAACC
339900 ATTTTATGGG
Statistics
Matches: 437, Mismatches: 46, Indels: 26
0.86 0.09 0.05
Matches are distributed among these distances:
127 1 0.00
128 49 0.11
129 29 0.07
130 97 0.22
131 161 0.37
132 6 0.01
133 52 0.12
135 1 0.00
136 38 0.09
137 2 0.00
138 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.24
Consensus pattern (131 bp):
AGGGGGTTCAATATATCGCGGCCATAATATTTTGAACCCCCTCTCCAATAGCAATGAAAAATAGA
GGGGGGTTCAAAATATCGCGGCCATAATATTTTGAACCCCCTCTCCAATACGAATTGGAAAATGG
T
Found at i:341545 original size:20 final size:19
Alignment explanation
Indices: 341505--341548 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
341495 TTTCGGATGC
*
341505 TGGAGGTGGTTAAGGTTTT
1 TGGAGCTGGTTAAGGTTTT
*
341524 TGGAGCTGGTTAAAGTTTT
1 TGGAGCTGGTTAAGGTTTT
*
341543 TTGAGC
1 TGGAGC
341549 AGGTGCCCTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.18, C:0.05, G:0.36, T:0.41
Consensus pattern (19 bp):
TGGAGCTGGTTAAGGTTTT
Found at i:341634 original size:177 final size:176
Alignment explanation
Indices: 341319--341879 Score: 648
Period size: 178 Copynumber: 3.2 Consensus size: 176
341309 GGGTCCTAAA
* * * * *
341319 TTTCAGATGCTGAAGGAGGTTAAGGTCTTTGGAGCCGGTTAAAG-TTTTTGTTG-AGGTGCCCTT
1 TTTCAGATGCTGGAGGAGGTTAAGGTTTTTGGAGCTGGTTAAAGTTTTTTG-AGCAGGTGCCCTC
** *
341382 TGATAGCA-ATATC-TAAGTTAC-CGCTGGTCCGTACTTCACCAAACTTGCATGGATGGTGTGTC
65 TGAT-G-ATATATCTTAA-TTACTC-CTGGTCCAAACTTCACCAAACTTGCATGGATGGTGCGTC
* *
341444 TTATGATACTGATGCACCAGACAGGCTTGAATGCTGAATCTGAACTATAGG
126 TTATGATACTGATGCACCTGACAGGCTTGAATGCTGAATCTGAACCATAGG
* *
341495 TTTCGGATGCTGGAGGTGGTTAAGGTTTTTGGAGCTGGTTAAAGTTTTTTGAGCAGGTGCCCTCT
1 TTTCAGATGCTGGAGGAGGTTAAGGTTTTTGGAGCTGGTTAAAGTTTTTTGAGCAGGTGCCCTCT
* * * **
341560 AATGATTATATCTTAACTACTCCTGGTCCAAACTTCATCAAACTTGTGTGGATGGTGCGTCTTAT
66 GATGA-TATATCTTAATTACTCCTGGTCCAAACTTCACCAAACTTGCATGGATGGTGCGTCTTAT
* *
341625 AATACTGATGCACCTGA-ACGGCTTGAATGCTGAATCTGACCCATAGG
130 GATACTGATGCACCTGACA-GGCTTGAATGCTGAATCTGAACCATAGG
* * ** *
341672 TTTCGGATGCTGGAGGAGGTTAAGGTTTTTAAGAGCTGGTTAAAGTTTTTAAAACAGGTGCCCTC
1 TTTCAGATGCTGGAGGAGGTTAAGGTTTTT-GGAGCTGGTTAAAGTTTTTTGAGCAGGTGCCCTC
* * * * * * *
341737 TGATGATGATATCTTAGTTATTACTGGTCCTAACTTCACCAGACTTCCATGGATGGTGCGTTTTA
65 TGATGAT-ATATCTTAATTACTCCTGGTCCAAACTTCACCAAACTTGCATGGATGGTGCGTCTTA
* * * * *
341802 TGATACTGATGCACCTGACAGGCTAGTATGCTGAGTCTGAGCCATAGT
129 TGATACTGATGCACCTGACAGGCTTGAATGCTGAATCTGAACCATAGG
** *
341850 TTTCAGATGCTGGATAAGGTTAAGTTTTTT
1 TTTCAGATGCTGGAGGAGGTTAAGGTTTTT
341880 TTAACAGGTC
Statistics
Matches: 329, Mismatches: 46, Indels: 18
0.84 0.12 0.05
Matches are distributed among these distances:
175 1 0.00
176 42 0.13
177 134 0.41
178 151 0.46
179 1 0.00
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (176 bp):
TTTCAGATGCTGGAGGAGGTTAAGGTTTTTGGAGCTGGTTAAAGTTTTTTGAGCAGGTGCCCTCT
GATGATATATCTTAATTACTCCTGGTCCAAACTTCACCAAACTTGCATGGATGGTGCGTCTTATG
ATACTGATGCACCTGACAGGCTTGAATGCTGAATCTGAACCATAGG
Found at i:342704 original size:4 final size:4
Alignment explanation
Indices: 342704--342757 Score: 81
Period size: 4 Copynumber: 13.5 Consensus size: 4
342694 GTGTCTGTCT
* * *
342704 GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCT GTCT GTCT GTCC
1 GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC
342752 GTCC GT
1 GTCC GT
342758 AACAAAAATT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 48 1.00
ACGTcount: A:0.00, C:0.43, G:0.26, T:0.31
Consensus pattern (4 bp):
GTCC
Found at i:343174 original size:166 final size:166
Alignment explanation
Indices: 342781--343896 Score: 1596
Period size: 166 Copynumber: 6.8 Consensus size: 166
342771 GTCGCATTTA
* *
342781 TCTCAGCAACTATTTATCGCAGATGCTTGAAATTTTAACACAGTTTTTGTTAAGGCATGCCATAT
1 TCTCAGCAACTATTTATCGCAGATGCTTGAAATTTTAACACAGTATTTGTTTAGGCATGCCATAT
*
342846 CGTGGGATATATTTTTGTACCAATCGGACGTCAACTTCCTGTTAAATGACGACTTTGATTATTTT
66 CGTGGGATATATTTTTGTACCAATCGGACGTCAACTTCCTGTTAAATGACGACTTTGTTTATTTT
* *
342911 TTAACCAAAATTTTCAAGCAAATTTTCGTCAAAGATT
131 TT-GCCAAAATTTTCAAACAAATTTTCGTCAAAGATT
* * * *
342948 TCTCAGCAACTGTTTATCGCAGATGCTTGAAATTTTTACACAGTATTTGTATATGCATGCCATAT
1 TCTCAGCAACTATTTATCGCAGATGCTTGAAATTTTAACACAGTATTTGTTTAGGCATGCCATAT
* * *
343013 CGTGGGATATATTTTTGTACCAATCAGTCGTCAACTTCCTGTTAAAAGACGACTTTGTTTATTTT
66 CGTGGGATATATTTTTGTACCAATCGGACGTCAACTTCCTGTTAAATGACGACTTTGTTTATTTT
* *
343078 TTGCCAAAATTTTCAAACAAATTTTTGTCAAAGAAT
131 TTGCCAAAATTTTCAAACAAATTTTCGTCAAAGATT
*
343114 TCTCAGCAACTATTTATCGCAGATGCTTGAAATTTTAACACACTATTTGTTTAGGCATGCCATAT
1 TCTCAGCAACTATTTATCGCAGATGCTTGAAATTTTAACACAGTATTTGTTTAGGCATGCCATAT
* *
343179 CGTGGGATATATTTTTGTATCAATCGGACGTCAACTTCCTGTTAAATGACGACTTTGATTATTTT
66 CGTGGGATATATTTTTGTACCAATCGGACGTCAACTTCCTGTTAAATGACGACTTTGTTTATTTT
*
343244 TT-----AA----C-CA-AAATTTTCGTCAAAGATT
131 TTGCCAAAATTTTCAAACAAATTTTCGTCAAAGATT
* *
343269 TCTCAGCAACTATTTATCGCAGATGCTTGAAATTTTAACACAGTGTTTGTTAAGGCATGCCATAT
1 TCTCAGCAACTATTTATCGCAGATGCTTGAAATTTTAACACAGTATTTGTTTAGGCATGCCATAT
** * *
343334 CGTGGGATATATTTTTGTACCAATCGGACGTCAACTTATTGTTAAATGACAACTTTGCTTATTTT
66 CGTGGGATATATTTTTGTACCAATCGGACGTCAACTTCCTGTTAAATGACGACTTTGTTTATTTT
343399 TTAAG-CAAAATTTTCAAACAAATTTTCGTCAAAGATT
131 TT--GCCAAAATTTTCAAACAAATTTTCGTCAAAGATT
* * * * * *
343436 TCTCAGCAGCTATTTATTGCAGATGCTTGAAATTTTAAAACACTCTTTGTTTTGGCATGCCATAT
1 TCTCAGCAACTATTTATCGCAGATGCTTGAAATTTTAACACAGTATTTGTTTAGGCATGCCATAT
* * * * *
343501 TGTGGGATATATTTTTGTATCAATCAGACGTCAACTTCCTGTTAAATAATGACTTTGTTTATTTT
66 CGTGGGATATATTTTTGTACCAATCGGACGTCAACTTCCTGTTAAATGACGACTTTGTTTATTTT
*
343566 TTGCCAAAATTTTCAACCAAATTTTCGTCAAAGATT
131 TTGCCAAAATTTTCAAACAAATTTTCGTCAAAGATT
* * *
343602 TCTCAGCAGCTATTTATCGGAGATGCTTTAAATTTTAACACAGTATTT-TTTAAGGCATGCCATA
1 TCTCAGCAACTATTTATCGCAGATGCTTGAAATTTTAACACAGTATTTGTTT-AGGCATGCCATA
*
343666 TCGTGGGATATATTTTTGTACCAATCGGACGTCATCTTCCTGTTAAATGA-GTACTTTGTTTA-T
65 TCGTGGGATATATTTTTGTACCAATCGGACGTCAACTTCCTGTTAAATGACG-ACTTTGTTTATT
* * *
343729 TTTAGCCAAAATTTTCAACCAAATTTTCCTCAAAGATT
129 TTTTGCCAAAATTTTCAAACAAATTTTCGTCAAAGATT
* * *
343767 TCTCAGCAGCTATTTATCGCAGATGCTTGAAATTTTAACACACTGTTTGTTTAGGCATGCCATAT
1 TCTCAGCAACTATTTATCGCAGATGCTTGAAATTTTAACACAGTATTTGTTTAGGCATGCCATAT
* * * * * * * *
343832 TGTGGGATATATTTCTGTACCAATCGGATGCCAGCTTTCTGTTAAATGTCGACTTTGCTTATTTT
66 CGTGGGATATATTTTTGTACCAATCGGACGTCAACTTCCTGTTAAATGACGACTTTGTTTATTTT
343897 GCATATTCAC
Statistics
Matches: 852, Mismatches: 79, Indels: 37
0.88 0.08 0.04
Matches are distributed among these distances:
155 140 0.16
156 1 0.00
157 1 0.00
161 4 0.00
165 151 0.18
166 299 0.35
167 256 0.30
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (166 bp):
TCTCAGCAACTATTTATCGCAGATGCTTGAAATTTTAACACAGTATTTGTTTAGGCATGCCATAT
CGTGGGATATATTTTTGTACCAATCGGACGTCAACTTCCTGTTAAATGACGACTTTGTTTATTTT
TTGCCAAAATTTTCAAACAAATTTTCGTCAAAGATT
Found at i:343678 original size:488 final size:489
Alignment explanation
Indices: 342781--343896 Score: 1697
Period size: 488 Copynumber: 2.3 Consensus size: 489
342771 GTCGCATTTA
*
342781 TCTCAGCAACTATTTATCGCAGATGCTTGAAATTTTAACACAGTTTTTGTTAAGGCATGCCATAT
1 TCTCAGCAACTATTTATCGCAGATGCTTGAAATTTTAACACAGTGTTTGTTAAGGCATGCCATAT
* *
342846 CGTGGGATATATTTTTGTACCAATCGGACGTCAACTTCCTGTTAAATGACGACTTTGATTATTTT
66 CGTGGGATATATTTTTGTACCAATCGGACGTCAACTT-TTGTTAAATGACGACTTTGCTTATTTT
* *
342911 TTAACCAAAATTTTCAAGCAAATTTTCGTCAAAGATTTCTCAGCAACTGTTTATCGCAGATGCTT
130 TTAACCAAAATTTTCAAACAAATTTTCGTCAAAGATTTCTCAGCAACTATTTATCGCAGATGCTT
* * * *
342976 GAAATTTTTACACAGTATTTGTATATGCATGCCATATCGTGGGATATATTTTTGTACCAATCAGT
195 GAAATTTTAAAACACTATTTGTATATGCATGCCATATCGTGGGATATATTTTTGTACCAATCAGA
*
343041 CGTCAACTTCCTGTTAAAAGACGACTTTGTTTATTTTTTGCCAAAATTTTCAAACAAATTTTTGT
260 CGTCAACTTCCTGTTAAAAGACGACTTTGTTTATTTTTTGCCAAAATTTTCAAACAAATTTTCGT
343106 CAAAGAATTCTCAGCAACTATTTATCGCAGATGCTTGAAATTTTAACACACTATTTGTTTAGGCA
325 CAAAGAATTCTCAGCAACTATTTATCGCAGATGCTTGAAATTTTAACACACTATTTGTTTAGGCA
*
343171 TGCCATATCGTGGGATATATTTTTGTATCAATCGGACGTCAACTTCCTGTTAAATGACG-ACTTT
390 TGCCATATCGTGGGATATATTTTTGTACCAATCGGACGTCAACTTCCTGTTAAATGA-GTACTTT
*
343235 GATTA-TT-TTTT-AACCAAAATTTTCGTCAAAGATT
454 GATTATTTATTTTCAACC-AAATTTTCCTCAAAGATT
343269 TCTCAGCAACTATTTATCGCAGATGCTTGAAATTTTAACACAGTGTTTGTTAAGGCATGCCATAT
1 TCTCAGCAACTATTTATCGCAGATGCTTGAAATTTTAACACAGTGTTTGTTAAGGCATGCCATAT
*
343334 CGTGGGATATATTTTTGTACCAATCGGACGTCAACTTATTGTTAAATGACAACTTTGCTTATTTT
66 CGTGGGATATATTTTTGTACCAATCGGACGTCAACTT-TTGTTAAATGACGACTTTGCTTATTTT
* * *
343399 TTAAGCAAAATTTTCAAACAAATTTTCGTCAAAGATTTCTCAGCAGCTATTTATTGCAGATGCTT
130 TTAACCAAAATTTTCAAACAAATTTTCGTCAAAGATTTCTCAGCAACTATTTATCGCAGATGCTT
* * * *
343464 GAAATTTTAAAACACTCTTTGT-TTTGGCATGCCATATTGTGGGATATATTTTTGTATCAATCAG
195 GAAATTTTAAAACACTATTTGTATAT-GCATGCCATATCGTGGGATATATTTTTGTACCAATCAG
* *
343528 ACGTCAACTTCCTGTTAAATA-ATGACTTTGTTTATTTTTTGCCAAAATTTTCAACCAAATTTTC
259 ACGTCAACTTCCTGTTAAA-AGACGACTTTGTTTATTTTTTGCCAAAATTTTCAAACAAATTTTC
* * * * *
343592 GTCAAAGATTTCTCAGCAGCTATTTATCGGAGATGCTTTAAATTTTAACACAGTATTT-TTTAAG
323 GTCAAAGAATTCTCAGCAACTATTTATCGCAGATGCTTGAAATTTTAACACACTATTTGTTT-AG
*
343656 GCATGCCATATCGTGGGATATATTTTTGTACCAATCGGACGTCATCTTCCTGTTAAATGAGTACT
387 GCATGCCATATCGTGGGATATATTTTTGTACCAATCGGACGTCAACTTCCTGTTAAATGAGTACT
*
343721 TTGTTTATTTTAGCCAAAATTTTCAACCAAATTTTCCTCAAAGATT
452 TTGATTA-TTT-------ATTTTCAACCAAATTTTCCTCAAAGATT
* * *
343767 TCTCAGCAGCTATTTATCGCAGATGCTTGAAATTTTAACACACTGTTTGTTTAGGCATGCCATAT
1 TCTCAGCAACTATTTATCGCAGATGCTTGAAATTTTAACACAGTGTTTGTTAAGGCATGCCATAT
* * * * * *
343832 TGTGGGATATATTTCTGTACCAATCGGATGCCAGCTTTCTGTTAAATGTCGACTTTGCTTATTTT
66 CGTGGGATATATTTTTGTACCAATCGGACGTCAACTTT-TGTTAAATGACGACTTTGCTTATTTT
343897 GCATATTCAC
Statistics
Matches: 572, Mismatches: 40, Indels: 22
0.90 0.06 0.03
Matches are distributed among these distances:
487 6 0.01
488 419 0.73
489 1 0.00
490 2 0.00
497 1 0.00
498 139 0.24
499 4 0.01
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (489 bp):
TCTCAGCAACTATTTATCGCAGATGCTTGAAATTTTAACACAGTGTTTGTTAAGGCATGCCATAT
CGTGGGATATATTTTTGTACCAATCGGACGTCAACTTTTGTTAAATGACGACTTTGCTTATTTTT
TAACCAAAATTTTCAAACAAATTTTCGTCAAAGATTTCTCAGCAACTATTTATCGCAGATGCTTG
AAATTTTAAAACACTATTTGTATATGCATGCCATATCGTGGGATATATTTTTGTACCAATCAGAC
GTCAACTTCCTGTTAAAAGACGACTTTGTTTATTTTTTGCCAAAATTTTCAAACAAATTTTCGTC
AAAGAATTCTCAGCAACTATTTATCGCAGATGCTTGAAATTTTAACACACTATTTGTTTAGGCAT
GCCATATCGTGGGATATATTTTTGTACCAATCGGACGTCAACTTCCTGTTAAATGAGTACTTTGA
TTATTTATTTTCAACCAAATTTTCCTCAAAGATT
Found at i:343805 original size:165 final size:165
Alignment explanation
Indices: 343241--343896 Score: 915
Period size: 165 Copynumber: 4.0 Consensus size: 165
343231 CTTTGATTAT
* *
343241 TTTTTAACCAAAATTTTCGTCAAAGATTTCTCAGCAACTATTTATCGCAGATGCTTGAAATTTTA
1 TTTTCAACC-AAATTTTCGTCAAAGATTTCTCAGCAGCTATTTATCGCAGATGCTTGAAATTTTA
* *
343306 ACACAGTGTTTGTTAAGGCATGCCATATCGTGGGATATATTTTTGTACCAATCGGACGTCAACTT
65 ACACACTGTTTGTTTAGGCATGCCATATCGTGGGATATATTTTTGTACCAATCGGACGTCAACTT
** ** *
343371 ATTGTTAAATGACAACTTTGCTTATTTTTTAAG-CAAAA
130 CCTGTTAAATGAGTACTTTG-TT-TATTTT-AGCCAAAA
* *
343409 TTTTCAAACAAATTTTCGTCAAAGATTTCTCAGCAGCTATTTATTGCAGATGCTTGAAATTTTAA
1 TTTTCAACCAAATTTTCGTCAAAGATTTCTCAGCAGCTATTTATCGCAGATGCTTGAAATTTTAA
* * * * * *
343474 AACACTCTTTGTTTTGGCATGCCATATTGTGGGATATATTTTTGTATCAATCAGACGTCAACTTC
66 CACACTGTTTGTTTAGGCATGCCATATCGTGGGATATATTTTTGTACCAATCGGACGTCAACTTC
* *
343539 CTGTTAAAT-AATGACTTTGTTTATTTTTTGCCAAAA
131 CTGTTAAATGAGT-ACTTTGTTTA-TTTTAGCCAAAA
* *
343575 TTTTCAACCAAATTTTCGTCAAAGATTTCTCAGCAGCTATTTATCGGAGATGCTTTAAATTTTAA
1 TTTTCAACCAAATTTTCGTCAAAGATTTCTCAGCAGCTATTTATCGCAGATGCTTGAAATTTTAA
* * *
343640 CACAGTATTT-TTTAAGGCATGCCATATCGTGGGATATATTTTTGTACCAATCGGACGTCATCTT
66 CACACTGTTTGTTT-AGGCATGCCATATCGTGGGATATATTTTTGTACCAATCGGACGTCAACTT
343704 CCTGTTAAATGAGTACTTTGTTTATTTTAGCCAAAA
130 CCTGTTAAATGAGTACTTTGTTTATTTTAGCCAAAA
*
343740 TTTTCAACCAAATTTTCCTCAAAGATTTCTCAGCAGCTATTTATCGCAGATGCTTGAAATTTTAA
1 TTTTCAACCAAATTTTCGTCAAAGATTTCTCAGCAGCTATTTATCGCAGATGCTTGAAATTTTAA
* * * * * *
343805 CACACTGTTTGTTTAGGCATGCCATATTGTGGGATATATTTCTGTACCAATCGGATGCCAGCTTT
66 CACACTGTTTGTTTAGGCATGCCATATCGTGGGATATATTTTTGTACCAATCGGACGTCAACTTC
* *
343870 CTGTTAAATGTCG-ACTTTGCTTATTTT
131 CTGTTAAATG-AGTACTTTGTTTATTTT
343897 GCATATTCAC
Statistics
Matches: 436, Mismatches: 45, Indels: 17
0.88 0.09 0.03
Matches are distributed among these distances:
165 154 0.35
166 149 0.34
167 126 0.29
168 7 0.02
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (165 bp):
TTTTCAACCAAATTTTCGTCAAAGATTTCTCAGCAGCTATTTATCGCAGATGCTTGAAATTTTAA
CACACTGTTTGTTTAGGCATGCCATATCGTGGGATATATTTTTGTACCAATCGGACGTCAACTTC
CTGTTAAATGAGTACTTTGTTTATTTTAGCCAAAA
Found at i:344195 original size:15 final size:15
Alignment explanation
Indices: 344166--344211 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
344156 GAGACAACCC
344166 TGTATC-TATGATAT
1 TGTATCATATGATAT
*
344180 TGTATCATACGATAT
1 TGTATCATATGATAT
*
344195 TGTATAATATGATAT
1 TGTATCATATGATAT
344210 TG
1 TG
344212 GTTTCTGTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
14 6 0.21
15 22 0.79
ACGTcount: A:0.33, C:0.07, G:0.15, T:0.46
Consensus pattern (15 bp):
TGTATCATATGATAT
Found at i:344329 original size:20 final size:20
Alignment explanation
Indices: 344276--344329 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 20
344266 ATTATATATT
* *
344276 ATATATTATCGTATCATACA
1 ATATAATATCATATCATACA
** * *
344296 ATATTGTATAATATTATACA
1 ATATAATATCATATCATACA
344316 ATATAATATCATAT
1 ATATAATATCATAT
344330 GTTTCAATGT
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.44, C:0.09, G:0.04, T:0.43
Consensus pattern (20 bp):
ATATAATATCATATCATACA
Found at i:344707 original size:16 final size:15
Alignment explanation
Indices: 344677--344716 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 15
344667 TTTTCATATG
344677 ATAAAGGTG-GTCTC
1 ATAAAGGTGAGTCTC
344691 ATAAAGGTGAAGTCTC
1 ATAAAGGTG-AGTCTC
*
344707 ATAAGGGTGA
1 ATAAAGGTGA
344717 TGCCTCGTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 9 0.39
15 1 0.04
16 13 0.57
ACGTcount: A:0.35, C:0.10, G:0.30, T:0.25
Consensus pattern (15 bp):
ATAAAGGTGAGTCTC
Found at i:346327 original size:12 final size:12
Alignment explanation
Indices: 346304--346348 Score: 74
Period size: 12 Copynumber: 3.8 Consensus size: 12
346294 ATCACATTTT
346304 GTCTGT-TGTCC
1 GTCTGTCTGTCC
346315 GTCTGTCTGTCC
1 GTCTGTCTGTCC
*
346327 GTCCGTCTGTCC
1 GTCTGTCTGTCC
346339 GTCTGTCTGT
1 GTCTGTCTGT
346349 AAACTTTTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
11 6 0.19
12 25 0.81
ACGTcount: A:0.00, C:0.31, G:0.27, T:0.42
Consensus pattern (12 bp):
GTCTGTCTGTCC
Found at i:346338 original size:8 final size:8
Alignment explanation
Indices: 346310--346345 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
346300 TTTTGTCTGT
346310 TGTCCGTC
1 TGTCCGTC
*
346318 TGTCTGTC
1 TGTCCGTC
*
346326 CGTCCGTC
1 TGTCCGTC
346334 TGTCCGTC
1 TGTCCGTC
346342 TGTC
1 TGTC
346346 TGTAAACTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.00, C:0.36, G:0.25, T:0.39
Consensus pattern (8 bp):
TGTCCGTC
Found at i:346801 original size:166 final size:166
Alignment explanation
Indices: 346546--347378 Score: 1118
Period size: 166 Copynumber: 5.0 Consensus size: 166
346536 AACCATAAGA
* * * *
346546 CCAGGAAAGCTGAAACTTATGTGAAAGCATTCTCAGGTAGTGTAGATTTAAATTTGTGAAAATCA
1 CCAGGAAAGCTGAAACTTGTGTGAAAGCATCCTCAGGTAGTGTAGATTCAAAGTTGTGAAAATCA
346611 TGACCCCCGGGGGTAGGGTGGGGCCACAATGGGGGGTCGAAGTTTAACATAGGAATATATAGAGT
66 TGACCCCCGGGGGTAGGGTGGGGCCACAATGGGGGGTCGAAGTTTAACATAGGAATATATAGAGT
*
346676 AAATCTTTAAAAATCTTCTTCTCAGAAACTAATCAT
131 AAATCTTTAAAAATCTTCTTCTCAGAAACTAATCAG
* *
346712 CCAGGAAAGCTGAAACTTGTGTGAAAGCATCCTCAGGTAATGTAGATTCAAAGTTGTGAAAATTA
1 CCAGGAAAGCTGAAACTTGTGTGAAAGCATCCTCAGGTAGTGTAGATTCAAAGTTGTGAAAATCA
* * * * * *
346777 TGTCCCCCGGGGATAGGATGGGGCCACAATGGGGGGTTGATGTTTAACCTAGGAATATATAGAGT
66 TGACCCCCGGGGGTAGGGTGGGGCCACAATGGGGGGTCGAAGTTTAACATAGGAATATATAGAGT
* *
346842 TAATCTTTAAAAATCTTCTTCTCAGACACTAATCAG
131 AAATCTTTAAAAATCTTCTTCTCAGAAACTAATCAG
*
346878 CCAGGAAAGCTGAAACTTGTGTG---G-A-----AGGTAGTGTAGATACAAAGTTGTGAAAATCA
1 CCAGGAAAGCTGAAACTTGTGTGAAAGCATCCTCAGGTAGTGTAGATTCAAAGTTGTGAAAATCA
* * * *
346934 TGACCCCTGGGGGTAGGGTGGGGCCACAATGGGGGGTCGAAGTGTAACATATGAATATATAAAGT
66 TGACCCCCGGGGGTAGGGTGGGGCCACAATGGGGGGTCGAAGTTTAACATAGGAATATATAGAGT
346999 AAATC-TTAAAAATCTTCTTCTCAGAAACTAATCAG
131 AAATCTTTAAAAATCTTCTTCTCAGAAACTAATCAG
* * * *
347034 CCAGGAAAGCTGAAACTTGTGTGGATGCATCCTCAGGTAGTGTAAACTCAAAGTTGTGAAAATCA
1 CCAGGAAAGCTGAAACTTGTGTGAAAGCATCCTCAGGTAGTGTAGATTCAAAGTTGTGAAAATCA
* *
347099 TGACCCCCGGGGGTAGGATGGGGCCACAATGGGGGATCGAAGTTTAACGA-AGG-A-ATATAGAG
66 TGACCCCCGGGGGTAGGGTGGGGCCACAATGGGGGGTCGAAGTTTAAC-ATAGGAATATATAGAG
* *
347161 TAAATCTTTAAAAATCTTCTTCTCATAAACTAATTAG
130 TAAATCTTTAAAAATCTTCTTCTCAGAAACTAATCAG
*
347198 CC-GGCAAAGCTGAAACTTGTGTGGAAGCATCCTCAGGTAGTGTAGATTCAAAGTTGTTTTAAAG
1 CCAGG-AAAGCTGAAACTTGTGTGAAAGCATCCTCAGGTAGTGTAGATTCAAA---G---T----
* * * ** * *
347262 TCGTGAAAATAATAACCCCTGGGGGTAGGGTGGGGCCACAATGGGGGGTTAAAATTAAACATAGG
55 T-GTGAAAATCATGACCCCCGGGGGTAGGGTGGGGCCACAATGGGGGGTCGAAGTTTAACATAGG
*
347327 AATATATAGAGTAAATCTTTAAAAATCATCTTCTCAGAAACTAATCAG
119 AATATATAGAGTAAATCTTTAAAAATCTTCTTCTCAGAAACTAATCAG
347375 CCAG
1 CCAG
347379 ATGATTCTTT
Statistics
Matches: 584, Mismatches: 56, Indels: 42
0.86 0.08 0.06
Matches are distributed among these distances:
156 52 0.09
157 87 0.15
159 1 0.00
160 1 0.00
162 1 0.00
163 16 0.03
164 75 0.13
165 74 0.13
166 175 0.30
167 1 0.00
170 1 0.00
174 2 0.00
175 52 0.09
176 1 0.00
177 44 0.08
178 1 0.00
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (166 bp):
CCAGGAAAGCTGAAACTTGTGTGAAAGCATCCTCAGGTAGTGTAGATTCAAAGTTGTGAAAATCA
TGACCCCCGGGGGTAGGGTGGGGCCACAATGGGGGGTCGAAGTTTAACATAGGAATATATAGAGT
AAATCTTTAAAAATCTTCTTCTCAGAAACTAATCAG
Found at i:347087 original size:322 final size:324
Alignment explanation
Indices: 346579--347378 Score: 1090
Period size: 322 Copynumber: 2.4 Consensus size: 324
346569 AAAGCATTCT
* * *
346579 CAGGTAGTGTAGATTTAAATTTGTGAAAATCATGACCCCCGGGGGTAGGGTGGGGCCACAATGGG
1 CAGGTAGTGTAGATTCAAAGTTGTGAAAATCATGACCCCTGGGGGTAGGGTGGGGCCACAATGGG
346644 GGGTCGAAGTTTAACATAGGAATATATAGAGTAAATCTTTAAAAATCTTCTTCTCAGAAACTAAT
66 GGGTCGAAG-TTAACATAGGAATATATAGAGTAAATCTTTAAAAATCTTCTTCTCAGAAACTAAT
* * *
346709 CATCCAGGAAAGCTGAAACTTGTGTGAAAGCATCCTCAGGTAATGTAGATTCAAAGTTGTGAAAA
130 CAGCCAGGAAAGCTGAAACTTGTGTGAAAGCATCCTCAGGTAATGTAAACTCAAAGTTGTGAAAA
* * * * * *
346774 TTATGTCCCCCGGGGATAGGATGGGGCCACAATGGGGGGTTGATGTTTAACCTAGGAATATATAG
195 TCATGACCCCCGGGGATAGGATGGGGCCACAATGGGGGATCGAAGTTTAACCAAGG-A-ATATAG
* *
346839 AGTTAATCTTTAAAAATCTTCTTCTCAGACACTAATCAGCCAGG-AAAGCTGAAACTTGTGT-G-
258 AGTAAATCTTTAAAAATCTTCTTCTCAGAAACTAATCAGCC-GGCAAAGCTGAAACTTGTGTGGA
346901 G-A
322 GCA
*
346903 -AGGTAGTGTAGATACAAAGTTGTGAAAATCATGACCCCTGGGGGTAGGGTGGGGCCACAATGGG
1 CAGGTAGTGTAGATTCAAAGTTGTGAAAATCATGACCCCTGGGGGTAGGGTGGGGCCACAATGGG
* *
346967 GGGTCGAAGTGTAACATATGAATATATAAAGTAAATC-TTAAAAATCTTCTTCTCAGAAACTAAT
66 GGGTCGAAGT-TAACATAGGAATATATAGAGTAAATCTTTAAAAATCTTCTTCTCAGAAACTAAT
* * *
347031 CAGCCAGGAAAGCTGAAACTTGTGTGGATGCATCCTCAGGTAGTGTAAACTCAAAGTTGTGAAAA
130 CAGCCAGGAAAGCTGAAACTTGTGTGAAAGCATCCTCAGGTAATGTAAACTCAAAGTTGTGAAAA
* *
347096 TCATGACCCCCGGGGGTAGGATGGGGCCACAATGGGGGATCGAAGTTTAACGAAGGAATATAGAG
195 TCATGACCCCCGGGGATAGGATGGGGCCACAATGGGGGATCGAAGTTTAACCAAGGAATATAGAG
* *
347161 TAAATCTTTAAAAATCTTCTTCTCATAAACTAATTAGCCGGCAAAGCTGAAACTTGTGTGGAAGC
260 TAAATCTTTAAAAATCTTCTTCTCAGAAACTAATCAGCCGGCAAAGCTGAAACTTGTGTGG-AGC
347226 A
324 A
* *
347227 TCCTCAGGTAGTGTAGATTCAAAGTTGTTTTAAAGTCGTGAAAATAATAACCCCTGGGGGTAGGG
1 ----CAGGTAGTGTAGATTCAAA---G---T----T-GTGAAAATCATGACCCCTGGGGGTAGGG
** * *
347292 TGGGGCCACAATGGGGGGTTAAAATTAAACATAGGAATATATAGAGTAAATCTTTAAAAATCATC
51 TGGGGCCACAATGGGGGGTCGAAGTT-AACATAGGAATATATAGAGTAAATCTTTAAAAATCTTC
347357 TTCTCAGAAACTAATCAGCCAG
115 TTCTCAGAAACTAATCAGCCAG
347379 ATGATTCTTT
Statistics
Matches: 419, Mismatches: 33, Indels: 31
0.87 0.07 0.06
Matches are distributed among these distances:
319 2 0.00
320 60 0.14
321 2 0.00
322 135 0.32
323 94 0.22
324 1 0.00
329 17 0.04
332 1 0.00
335 1 0.00
339 2 0.00
340 71 0.17
341 33 0.08
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (324 bp):
CAGGTAGTGTAGATTCAAAGTTGTGAAAATCATGACCCCTGGGGGTAGGGTGGGGCCACAATGGG
GGGTCGAAGTTAACATAGGAATATATAGAGTAAATCTTTAAAAATCTTCTTCTCAGAAACTAATC
AGCCAGGAAAGCTGAAACTTGTGTGAAAGCATCCTCAGGTAATGTAAACTCAAAGTTGTGAAAAT
CATGACCCCCGGGGATAGGATGGGGCCACAATGGGGGATCGAAGTTTAACCAAGGAATATAGAGT
AAATCTTTAAAAATCTTCTTCTCAGAAACTAATCAGCCGGCAAAGCTGAAACTTGTGTGGAGCA
Found at i:348450 original size:12 final size:13
Alignment explanation
Indices: 348420--348452 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
348410 GGTAAAAGTA
348420 TAAGCAGTTATTC
1 TAAGCAGTTATTC
348433 TAAGCAGTT-TTC
1 TAAGCAGTTATTC
*
348445 TTAGCAGT
1 TAAGCAGT
348453 CTTTGCAGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 10 0.53
13 9 0.47
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.39
Consensus pattern (13 bp):
TAAGCAGTTATTC
Found at i:357188 original size:8 final size:8
Alignment explanation
Indices: 357168--357221 Score: 55
Period size: 8 Copynumber: 7.4 Consensus size: 8
357158 GATCGCATTT
357168 TGTCCGT-
1 TGTCCGTC
357175 TGTCCGTC
1 TGTCCGTC
357183 TGTCCGTC
1 TGTCCGTC
357191 --T--GTC
1 TGTCCGTC
357195 TGTCCGTC
1 TGTCCGTC
* *
357203 CGTCCTTC
1 TGTCCGTC
357211 TGTCCGTC
1 TGTCCGTC
357219 TGT
1 TGT
357222 AAACTTTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
4 3 0.08
6 2 0.05
7 7 0.18
8 26 0.68
ACGTcount: A:0.00, C:0.35, G:0.24, T:0.41
Consensus pattern (8 bp):
TGTCCGTC
Found at i:358360 original size:15 final size:15
Alignment explanation
Indices: 358340--358371 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
358330 GGGTAGGTAC
358340 ATTTAATTTACAAAT
1 ATTTAATTTACAAAT
*
358355 ATTTAATTTATAAAT
1 ATTTAATTTACAAAT
358370 AT
1 AT
358372 GGCTATCTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (15 bp):
ATTTAATTTACAAAT
Found at i:359928 original size:63 final size:63
Alignment explanation
Indices: 359829--359955 Score: 254
Period size: 63 Copynumber: 2.0 Consensus size: 63
359819 GAATTAGAAG
359829 TTATATAACAGTGTACCCCTACCAAATATTTAGTTCTATATCTTGCGTAGGATTTTCTTATTC
1 TTATATAACAGTGTACCCCTACCAAATATTTAGTTCTATATCTTGCGTAGGATTTTCTTATTC
359892 TTATATAACAGTGTACCCCTACCAAATATTTAGTTCTATATCTTGCGTAGGATTTTCTTATTC
1 TTATATAACAGTGTACCCCTACCAAATATTTAGTTCTATATCTTGCGTAGGATTTTCTTATTC
359955 T
1 T
359956 GTGTAAAAAC
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 64 1.00
ACGTcount: A:0.27, C:0.19, G:0.11, T:0.43
Consensus pattern (63 bp):
TTATATAACAGTGTACCCCTACCAAATATTTAGTTCTATATCTTGCGTAGGATTTTCTTATTC
Found at i:363264 original size:2 final size:2
Alignment explanation
Indices: 363257--363291 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
363247 CTTAATATAC
*
363257 GA GA GA GA GA GA GA GA GA GA GA GA TA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
363292 TAAGTAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.49, T:0.03
Consensus pattern (2 bp):
GA
Found at i:363630 original size:33 final size:33
Alignment explanation
Indices: 363588--363668 Score: 135
Period size: 33 Copynumber: 2.5 Consensus size: 33
363578 GCCCTCTAAG
*
363588 GGGACACAGGTAGACTTTACCTGTATATACTTT
1 GGGACACAGGTAGACTTTACCTGTAAATACTTT
363621 GGGACACAGGTAGACTTTACCTGTAAATACTTT
1 GGGACACAGGTAGACTTTACCTGTAAATACTTT
**
363654 GGTTCACAGGTAGAC
1 GGGACACAGGTAGAC
363669 GACATTGTCT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (33 bp):
GGGACACAGGTAGACTTTACCTGTAAATACTTT
Found at i:365105 original size:10 final size:11
Alignment explanation
Indices: 365074--365106 Score: 52
Period size: 10 Copynumber: 3.2 Consensus size: 11
365064 CACAAATAAG
365074 CATAGTAATG-
1 CATAGTAATGC
365084 CATAGTAATGC
1 CATAGTAATGC
365095 CAT-GTAATGC
1 CATAGTAATGC
365105 CA
1 CA
365107 GCATTACACT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 19 0.86
11 3 0.14
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.27
Consensus pattern (11 bp):
CATAGTAATGC
Found at i:371188 original size:59 final size:58
Alignment explanation
Indices: 370975--371182 Score: 262
Period size: 59 Copynumber: 3.6 Consensus size: 58
370965 ATGGGTTCTC
*
370975 ATTAAGGTCTTCCGTTTCCAACGGAAGACCTTATAGTGATTGTAGTGTTTCTTATTATT
1 ATTAAGGTCTTCCGTTTCCAACGGAAGACCTTATAGTGATTGTAG-GTTTCTTTTTATT
* *
371034 TTTAAGGTCTTCGGTTTCCAACGGAAGACCTTATAGTGATTGTAAGG--T-TTTTTATT
1 ATTAAGGTCTTCCGTTTCCAACGGAAGACCTTATAGTGATTGT-AGGTTTCTTTTTATT
* * * ** * *
371090 ATTAGGGTCTTCCGTTTTCAACGGAAGACCCTT-TTGTTTTTCCTCGGTTTCTTTTTATT
1 ATTAAGGTCTTCCGTTTCCAACGGAAGA-CCTTATAGTGATT-GTAGGTTTCTTTTTATT
371149 ATTAAGGTCTTCCGTTTCCAACGGAAGACCTTAT
1 ATTAAGGTCTTCCGTTTCCAACGGAAGACCTTAT
371183 TGTTTTCGTT
Statistics
Matches: 128, Mismatches: 14, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
56 38 0.30
57 6 0.05
58 5 0.04
59 77 0.60
60 2 0.02
ACGTcount: A:0.21, C:0.17, G:0.19, T:0.43
Consensus pattern (58 bp):
ATTAAGGTCTTCCGTTTCCAACGGAAGACCTTATAGTGATTGTAGGTTTCTTTTTATT
Found at i:388659 original size:15 final size:15
Alignment explanation
Indices: 388635--388669 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
388625 CATATGATAC
388635 AATA-TGTATTATAG
1 AATATTGTATTATAG
*
388649 AATATTGTATTATAT
1 AATATTGTATTATAG
388664 AATATT
1 AATATT
388670 TTACTTTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.49
Consensus pattern (15 bp):
AATATTGTATTATAG
Found at i:390165 original size:2 final size:2
Alignment explanation
Indices: 390158--390189 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
390148 TCCACCCCCT
390158 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
390190 CCAAACCAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:391274 original size:16 final size:16
Alignment explanation
Indices: 391249--391280 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
391239 TATGCGGGAC
391249 ATACTAAAGACCTGAA
1 ATACTAAAGACCTGAA
*
391265 ATACTCAAGACCTGAA
1 ATACTAAAGACCTGAA
391281 TGTCATTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.22, G:0.12, T:0.19
Consensus pattern (16 bp):
ATACTAAAGACCTGAA
Found at i:396327 original size:11 final size:10
Alignment explanation
Indices: 396308--396341 Score: 68
Period size: 10 Copynumber: 3.4 Consensus size: 10
396298 CACGCATGTT
396308 AATAAAAAAA
1 AATAAAAAAA
396318 AATAAAAAAA
1 AATAAAAAAA
396328 AATAAAAAAA
1 AATAAAAAAA
396338 AATA
1 AATA
396342 TATATATATN
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (10 bp):
AATAAAAAAA
Found at i:396463 original size:2 final size:2
Alignment explanation
Indices: 396458--396483 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
396448 ATATATATAG
396458 AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC
396484 TATTTGGGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:400068 original size:15 final size:16
Alignment explanation
Indices: 400035--400076 Score: 68
Period size: 15 Copynumber: 2.6 Consensus size: 16
400025 TGATCACAAT
400035 TTGTCCGTTGTCTGTCG
1 TTGT-CGTTGTCTGTCG
400052 TTGTCGTTGTC-GTCG
1 TTGTCGTTGTCTGTCG
400067 TTGTCGTTGT
1 TTGTCGTTGT
400077 TAACTTTTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
15 14 0.56
16 7 0.28
17 4 0.16
ACGTcount: A:0.00, C:0.19, G:0.31, T:0.50
Consensus pattern (16 bp):
TTGTCGTTGTCTGTCG
Found at i:400520 original size:166 final size:166
Alignment explanation
Indices: 400246--401436 Score: 1346
Period size: 166 Copynumber: 7.2 Consensus size: 166
400236 GGTATTTTTC
* * * ** *
400246 AAAAATCTTCTTCTCAAAAACTATTTGGCCTGAAAAGCTAAAACTT-GTGTGGAGGCATCCTCAG
1 AAAAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAA-TTAAAGTGGAAGCATCCTCAG
*
400310 GTAGTGTAGATTCAAGTTTGTTCAAATCATGGTCCCCGGGGGTAGGGAGGGGCCACAATTGGGGG
65 GTAGTGTAGATTCAAGTTTGTTCAAATCATGGTCCCCGGGGGTAGGGTGGGGCCACAATTGGGGG
400375 ATCAAGTTTTACATAGGAATATATAGAGAAAATCTTT
130 ATCAAGTTTTACATAGGAATATATAGAGAAAATCTTT
* * * *
400412 AAAAATCTTCTTCTCAAAAACTATTGGGCCAGAAAAGCTCAAATTAAAATGGGAGCATCCACAGG
1 AAAAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAATTAAAGTGGAAGCATCCTCAGG
*
400477 TAGTGTAGATTCAAATTTGTTCAAATCATGGTCCCCGGGGGTAGGGTGGGGCCACAATTGGGGGA
66 TAGTGTAGATTCAAGTTTGTTCAAATCATGGTCCCCGGGGGTAGGGTGGGGCCACAATTGGGGGA
400542 TCAAGTTTTACATAGGAATATATAGAGAAAATCTTT
131 TCAAGTTTTACATAGGAATATATAGAGAAAATCTTT
*
400578 AGAAA---TCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAATTAAAGTGGAAGCATCCTCAGG
1 AAAAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAATTAAAGTGGAAGCATCCTCAGG
* * * * *
400640 TAGTGTAGATTCAAGTTTGTTCAAATCATAGTCCCTGGTGGTATGGTGGGACCACAA-TGGGGGA
66 TAGTGTAGATTCAAGTTTGTTCAAATCATGGTCCCCGGGGGTAGGGTGGGGCCACAATTGGGGG-
* * *
400704 ATGAATTTTTACATAGGCATATATAGAGAAAATCTTT
130 ATCAAGTTTTACATAGGAATATATAGAGAAAATCTTT
400741 AAAAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAATTAAAGTGGAAGCATCCTCAGG
1 AAAAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAATTAAAGTGGAAGCATCCTCAGG
* * *
400806 TAGTGTAGATTCAAGTTTGTTCAAATCATGGTCCCTGGAGGTAGGGTGGGGCCACAATGGGGGGA
66 TAGTGTAGATTCAAGTTTGTTCAAATCATGGTCCCCGGGGGTAGGGTGGGGCCACAATTGGGGGA
* *
400871 TCAAGTTTTACATAAGAACATATAGAGAAAATCTTT
131 TCAAGTTTTACATAGGAATATATAGAGAAAATCTTT
* * * **
400907 AAAAATCTTCTTCTAAAAAAGTATTAGGCCA-ACAAAGCTCATATTTGAGTGGAAGCATCCTCAG
1 AAAAATCTTCTTCTCAAAAACTATTAGGCCAGA-AAAGCTCAAATTAAAGTGGAAGCATCCTCAG
* * * * *
400971 ATAGTGTAGATTCAAGTTTGTTCAAACCATGGTCCCCAGGGGTAGGGTGGGGCCACAATTAGGGT
65 GTAGTGTAGATTCAAGTTTGTTCAAATCATGGTCCCCGGGGGTAGGGTGGGGCCACAATTGGGGG
* * * * *
401036 ATAAATTTTTAAACAGGAATACCCGGTATATAGAAAAAATCTTT
130 ATCAAGTTTTACATAGG-A-A-----TATATAGAGAAAATCTTT
* * * *** * *
401080 AAAAATATTTCTT-TTAAAAACTATTTGGCCA-ACAAAGCTCAAATTGGCGTGTAACCATCCTCA
1 AAAAAT-CTTCTTCTCAAAAACTATTAGGCCAGA-AAAGCTCAAATTAAAGTGGAAGCATCCTCA
* * * * * * * *
401143 GATAATGTAGATCCAAGTCTGTTCAAATCATGGTCCCTGTGGGTAGGGCGGGGCCACTA-TGGGG
64 GGTAGTGTAGATTCAAGTTTGTTCAAATCATGGTCCCCGGGGGTAGGGTGGGGCCACAATTGGGG
* *
401207 GAT-AAATTTT---T----ATATATAAAGAAAATCTTT
129 GATCAAGTTTTACATAGGAATATATAGAGAAAATCTTT
* * * ** * * *
401237 AAAAATCTTCTTCT-AAAAACTAATAGGCCAGGAAAGCCCAAATTTGAGTGGACGCATCCCCAGA
1 AAAAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAATTAAAGTGGAAGCATCCTCAGG
* * * * * * * * * * *
401301 TCG-ATAGATTCAAGTTTGTTTAAATAATAGTCCAC--GGATATGGTGAGGCCACAA-TCGGGTA
66 TAGTGTAGATTCAAGTTTGTTCAAATCATGGTCCCCGGGGGTAGGGTGGGGCCACAATTGGGGGA
* * *
401362 TGAATTTTTACAAAGGAATATATAGAGAAAATCTTT
131 TCAAGTTTTACATAGGAATATATAGAGAAAATCTTT
* * * * *
401398 AAAAATCTTCTTTTTAAAGACTATTTGGCCAGGAAAGCT
1 AAAAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCT
401437 TAAACTTTTG
Statistics
Matches: 883, Mismatches: 116, Indels: 56
0.84 0.11 0.05
Matches are distributed among these distances:
153 20 0.02
154 6 0.01
155 24 0.03
156 45 0.05
157 23 0.03
161 31 0.04
162 27 0.03
163 142 0.16
165 3 0.00
166 424 0.48
167 6 0.01
168 1 0.00
171 6 0.01
172 6 0.01
173 114 0.13
174 5 0.01
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.28
Consensus pattern (166 bp):
AAAAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAATTAAAGTGGAAGCATCCTCAGG
TAGTGTAGATTCAAGTTTGTTCAAATCATGGTCCCCGGGGGTAGGGTGGGGCCACAATTGGGGGA
TCAAGTTTTACATAGGAATATATAGAGAAAATCTTT
Found at i:400697 original size:329 final size:327
Alignment explanation
Indices: 400246--401436 Score: 1404
Period size: 329 Copynumber: 3.6 Consensus size: 327
400236 GGTATTTTTC
* * * * * * *
400246 AAAAATCTTCTTCTCAAAAACTATTTGGCCTGAAAAGCTAAAACTTGTGTGGAGGCATCCTCAGG
1 AAAAATCTTCTTCT-AAAAACTATTAGGCCAGAAAAGCTCAAATTTGAGTGGAAGCATCCTCAGA
* *
400311 TAGTGTAGATTCAAGTTTGTTCAAATCATGGTCCCCGGGGGTAGGGAGGGGCCACAATTGGGGGA
65 TAGTGTAGATTCAAGTTTGTTCAAATCATAGT-CCC-GGGGTAGGGTGGGGCCACAA-TGGGGGA
* * *
400376 TCAAGTTTTACATAGGAATATATAGAGAAAATCTTTAAAAATCTTCTTCTCAAAAACTATTGGGC
127 TGAATTTTTACATAGGAATATATAGAGAAAATCTTTAAAAATCTTCTTCTCAAAAACTATTTGGC
* * * *
400441 CAGAAAAGCTCAAATTAAAATGGGAGCATCCACAGGTAGTGTAGATTCAAATTTGTTCAAATCAT
192 CAGAAAAGCTCAAATTAAAGTGGAAGCATCCTCAGGTAGTGTAGATTCAAGTTTGTTCAAATCAT
*
400506 GGTCCCCGGGGGTAGGGTGGGGCCACAATTGGGGGATCAAGTTTTACATAGGAATATATAGAGAA
257 GGTCCCTGGGGGTAGGGTGGGGCCACAATTGGGGGATCAAGTTTTACATA-GAATATATAGAGAA
400571 AATCTTT
321 AATCTTT
* ** *
400578 AGAAATCTTC-TC-AAAAACTATTAGGCCAGAAAAGCTCAAATTAAAGTGGAAGCATCCTCAGGT
1 AAAAATCTTCTTCTAAAAACTATTAGGCCAGAAAAGCTCAAATTTGAGTGGAAGCATCCTCAGAT
* *
400641 AGTGTAGATTCAAGTTTGTTCAAATCATAGTCCCTGGTGGTATGGTGGGACCACAATGGGGGAAT
66 AGTGTAGATTCAAGTTTGTTCAAATCATAGTCCC-GG-GGTAGGGTGGGGCCACAATGGGGG-AT
* *
400706 GAATTTTTACATAGGCATATATAGAGAAAATCTTTAAAAATCTTCTTCTCAAAAACTATTAGGCC
128 GAATTTTTACATAGGAATATATAGAGAAAATCTTTAAAAATCTTCTTCTCAAAAACTATTTGGCC
400771 AGAAAAGCTCAAATTAAAGTGGAAGCATCCTCAGGTAGTGTAGATTCAAGTTTGTTCAAATCATG
193 AGAAAAGCTCAAATTAAAGTGGAAGCATCCTCAGGTAGTGTAGATTCAAGTTTGTTCAAATCATG
* * *
400836 GTCCCTGGAGGTAGGGTGGGGCCACAATGGGGGGATCAAGTTTTACATAAGAACATATAGAGAAA
258 GTCCCTGGGGGTAGGGTGGGGCCACAATTGGGGGATCAAGTTTTACAT-AGAATATATAGAGAAA
400901 ATCTTT
322 ATCTTT
* *
400907 AAAAATCTTCTTCTAAAAAAGTATTAGGCCA-ACAAAGCTCATATTTGAGTGGAAGCATCCTCAG
1 AAAAATCTTCTTCT-AAAAACTATTAGGCCAGA-AAAGCTCAAATTTGAGTGGAAGCATCCTCAG
* * * *
400971 ATAGTGTAGATTCAAGTTTGTTCAAACCATGGTCCCCAGGGGTAGGGTGGGGCCACAATTAGGGT
64 ATAGTGTAGATTCAAGTTTGTTCAAATCATAGT-CCC-GGGGTAGGGTGGGGCCACAA-TGGGGG
* * * * * *
401036 ATAAATTTTTAAACAGGAATACCCGGTATATAGAAAAAATCTTTAAAAATATTTCTT-TTAAAAA
126 ATGAATTTTTACATAGG-A-A-----TATATAGAGAAAATCTTTAAAAAT-CTTCTTCTCAAAAA
*** * * * * * *
401100 CTATTTGGCCA-ACAAAGCTCAAATTGGCGTGTAACCATCCTCAGATAATGTAGATCCAAGTCTG
183 CTATTTGGCCAGA-AAAGCTCAAATTAAAGTGGAAGCATCCTCAGGTAGTGTAGATTCAAGTTTG
* * * *
401164 TTCAAATCATGGTCCCTGTGGGTAGGGCGGGGCCACTA-TGGGGGAT-AAATTTT---T---ATA
247 TTCAAATCATGGTCCCTGGGGGTAGGGTGGGGCCACAATTGGGGGATCAAGTTTTACATAGAATA
*
401221 TATAAAGAAAATCTTT
312 TATAGAGAAAATCTTT
* * * * *
401237 AAAAATCTTCTTCTAAAAACTAATAGGCCAGGAAAGCCCAAATTTGAGTGGACGCATCCCCAGAT
1 AAAAATCTTCTTCTAAAAACTATTAGGCCAGAAAAGCTCAAATTTGAGTGGAAGCATCCTCAGAT
* * * * * * * * *
401302 CG-ATAGATTCAAGTTTGTTTAAATAATAGTCCAC-GGATATGGTGAGGCCACAATCGGGTATGA
66 AGTGTAGATTCAAGTTTGTTCAAATCATAGTCC-CGGGGTAGGGTGGGGCCACAATGGGGGATGA
* * * *
401365 ATTTTTACAAAGGAATATATAGAGAAAATCTTTAAAAATCTTCTTTTTAAAGACTATTTGGCCAG
130 ATTTTTACATAGGAATATATAGAGAAAATCTTTAAAAATCTTCTTCTCAAAAACTATTTGGCCAG
*
401430 GAAAGCT
195 AAAAGCT
401437 TAAACTTTTG
Statistics
Matches: 749, Mismatches: 88, Indels: 58
0.84 0.10 0.06
Matches are distributed among these distances:
317 5 0.01
318 46 0.06
323 1 0.00
324 1 0.00
325 19 0.03
326 16 0.02
327 2 0.00
328 35 0.05
329 330 0.44
330 34 0.05
331 3 0.00
332 112 0.15
333 9 0.01
334 2 0.00
337 6 0.01
338 8 0.01
339 115 0.15
340 5 0.01
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.28
Consensus pattern (327 bp):
AAAAATCTTCTTCTAAAAACTATTAGGCCAGAAAAGCTCAAATTTGAGTGGAAGCATCCTCAGAT
AGTGTAGATTCAAGTTTGTTCAAATCATAGTCCCGGGGTAGGGTGGGGCCACAATGGGGGATGAA
TTTTTACATAGGAATATATAGAGAAAATCTTTAAAAATCTTCTTCTCAAAAACTATTTGGCCAGA
AAAGCTCAAATTAAAGTGGAAGCATCCTCAGGTAGTGTAGATTCAAGTTTGTTCAAATCATGGTC
CCTGGGGGTAGGGTGGGGCCACAATTGGGGGATCAAGTTTTACATAGAATATATAGAGAAAATCT
TT
Found at i:401257 original size:495 final size:488
Alignment explanation
Indices: 400246--401436 Score: 1418
Period size: 495 Copynumber: 2.4 Consensus size: 488
400236 GGTATTTTTC
* * * * *
400246 AAAAATCTTCTTCTCAAAAACTATTTGGCCTGAAAAGCTAAAACTTGTGTGGAGGCATCCTCAGG
1 AAAAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAA-TTGAGTGGAAGCATCCTCAGG
* *
400311 TAGTGTAGATTCAAGTTTGTTCAAATCATGGTCCCCGGGGGTAGGGAGGGGCCACAATTGGGGGA
65 TAGTGTAGATTCAAGTTTGTTCAAATCATGGT-CCCGGAGGTAGGGTGGGGCCACAA-TGGGGGA
* * *
400376 TCAAGTTTTACATAGGAATATATAGAGAAAATCTTTAAAAATCTTCTTCTCAAAAACTATTGGGC
128 TCAAGTTTTACATAAGAATATATAGAGAAAATCTTTAAAAATCTTCTTCTAAAAAACTATTAGGC
* * *
400441 CAGAAAAGCTCAAATTAAAATGGGAGCATCCACAGGTAGTGTAGATTCAAATTTGTTCAAATCAT
193 CAGAAAAGCTCAAATTAAAATGGAAGCATCCACAGATAGTGTAGATTCAAATTTGTTCAAACCAT
* * * * * *
400506 GGTCCCCGGGGGTAGGGTGGGGCCACAATTGGGGGATCAAGTTTTACATAGGAATATATAGAGAA
258 GGTCCCCAGGGGTAGGGTGGGGCCACAATTAGGGGATAAAGTTTTAAACAGGAATATATAGAAAA
* *
400571 AATCTTTAGAAATCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAATTAAAGTGGAAGCATCCT
323 AATCTTTAAAAATCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAATTAAAGTGGAACCATCCT
* * * * * *
400636 CAGGTAGTGTAGATTCAAGTTTGTTCAAATCATAGTCCCTGGTGGTATGGTGGGACCACAATGGG
388 CAGATAATGTAGATCCAAGTCTGTTCAAATCATAGTCCCTGGTGGTAGGGCGGGACCACAATGGG
*
400701 GGAATGAATTTTTACATAGGCATATATAGAGAAAATCTTT
453 GGAATAAATTTTTA-AT--G-ATATATAGAGAAAATCTTT
*
400741 AAAAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAATTAAAGTGGAAGCATCCTCAGG
1 AAAAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAATT-GAGTGGAAGCATCCTCAGG
400806 TAGTGTAGATTCAAGTTTGTTCAAATCATGGTCCCTGGAGGTAGGGTGGGGCCACAATGGGGGGA
65 TAGTGTAGATTCAAGTTTGTTCAAATCATGGTCCC-GGAGGTAGGGTGGGGCCACAAT-GGGGGA
* *
400871 TCAAGTTTTACATAAGAACATATAGAGAAAATCTTTAAAAATCTTCTTCTAAAAAAGTATTAGGC
128 TCAAGTTTTACATAAGAATATATAGAGAAAATCTTTAAAAATCTTCTTCTAAAAAACTATTAGGC
* ** * * *
400936 CA-ACAAAGCTCATATTTGAGTGGAAGCATCCTCAGATAGTGTAGATTCAAGTTTGTTCAAACCA
193 CAGA-AAAGCTCAAATTAAAATGGAAGCATCCACAGATAGTGTAGATTCAAATTTGTTCAAACCA
* *
401000 TGGTCCCCAGGGGTAGGGTGGGGCCACAATTAGGGTATAAATTTTTAAACAGGAATACCCGGTAT
257 TGGTCCCCAGGGGTAGGGTGGGGCCACAATTAGGGGATAAAGTTTTAAACAGG-A-A-----TAT
* * * ***
401065 ATAGAAAAAATCTTTAAAAATATTTCTTTTAAAAACTATTTGGCCA-ACAAAGCTCAAATTGGCG
315 ATAGAAAAAATCTTTAAAAAT-CTTC--TCAAAAACTATTAGGCCAGA-AAAGCTCAAATTAAAG
* *
401129 TGTAACCATCCTCAGATAATGTAGATCCAAGTCTGTTCAAATCATGGTCCCT-GTGGGTAGGGCG
376 TGGAACCATCCTCAGATAATGTAGATCCAAGTCTGTTCAAATCATAGTCCCTGGT-GGTAGGGCG
* *
401193 GGGCCACTATGGGGG-ATAAATTTTT-AT-ATATA-A-AGAAAATCTTT
440 GGACCACAATGGGGGAATAAATTTTTAATGATATATAGAGAAAATCTTT
* * * * * *
401237 AAAAATCTTCTTCT-AAAAACTAATAGGCCAGGAAAGCCCAAATTTGAGTGGACGCATCCCCAGA
1 AAAAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAA-TTGAGTGGAAGCATCCTCAGG
* * * * * * * * *
401301 TCG-ATAGATTCAAGTTTGTTTAAATAATAGTCCACGGA--TATGGTGAGGCCACAATCGGGTAT
65 TAGTGTAGATTCAAGTTTGTTCAAATCATGGTCC-CGGAGGTAGGGTGGGGCCACAATGGGGGAT
* * * * * *
401363 GAATTTTTACA-AAGGAATATATAGAGAAAATCTTTAAAAATCTTCTTTTTAAAGACTATTTGGC
129 CAAGTTTTACATAA-GAATATATAGAGAAAATCTTTAAAAATCTTCTTCTAAAAAACTATTAGGC
*
401427 CAGGAAAGCT
193 CAGAAAAGCT
401437 TAAACTTTTG
Statistics
Matches: 602, Mismatches: 74, Indels: 44
0.84 0.10 0.06
Matches are distributed among these distances:
490 2 0.00
491 66 0.11
492 15 0.02
494 36 0.06
495 315 0.52
496 28 0.05
497 2 0.00
498 5 0.01
502 24 0.04
503 3 0.00
504 12 0.02
505 94 0.16
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.28
Consensus pattern (488 bp):
AAAAATCTTCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAATTGAGTGGAAGCATCCTCAGGT
AGTGTAGATTCAAGTTTGTTCAAATCATGGTCCCGGAGGTAGGGTGGGGCCACAATGGGGGATCA
AGTTTTACATAAGAATATATAGAGAAAATCTTTAAAAATCTTCTTCTAAAAAACTATTAGGCCAG
AAAAGCTCAAATTAAAATGGAAGCATCCACAGATAGTGTAGATTCAAATTTGTTCAAACCATGGT
CCCCAGGGGTAGGGTGGGGCCACAATTAGGGGATAAAGTTTTAAACAGGAATATATAGAAAAAAT
CTTTAAAAATCTTCTCAAAAACTATTAGGCCAGAAAAGCTCAAATTAAAGTGGAACCATCCTCAG
ATAATGTAGATCCAAGTCTGTTCAAATCATAGTCCCTGGTGGTAGGGCGGGACCACAATGGGGGA
ATAAATTTTTAATGATATATAGAGAAAATCTTT
Done.