Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold1179
Parameters: 2 7 7 80 10 50 500
Length:  1367275

Tables:   1   2   3   4   

This is table  4  of  4  ( 402 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1201910--1202026
27
4.3
27
94
1
207
35
11
7
45
1.68
1210377--1210403
2
13.5
2
100
0
54
48
51
0
0
1.00
1210403--1210447
1
45.0
1
100
0
90
0
100
0
0
0.00
1214496--1214542
2
23.5
2
100
0
94
0
51
0
48
1.00
1220072--1220103
16
2.0
16
93
0
55
46
18
12
21
1.82
1229926--1231652
344
5.1
341
87
4
2261
25
26
15
32
1.95
1229926--1231652
171
10.2
167
87
4
2176
25
26
15
32
1.95
1231822--1231890
12
5.8
12
91
1
113
31
26
42
0
1.56
1231822--1231884
4
15.8
4
89
0
99
30
25
44
0
1.54
1234161--1234190
1
30.0
1
93
0
51
3
96
0
0
0.21
1235685--1235753
12
5.8
12
91
1
113
31
26
42
0
1.56
1235685--1235747
4
15.8
4
89
0
99
30
25
44
0
1.54
1241842--1241889
23
2.2
22
78
10
53
37
12
2
47
1.53
1244928--1244970
4
10.8
4
79
0
50
2
30
23
44
1.66
1244975--1245517
146
3.7
146
94
0
926
27
19
22
29
1.98
1255839--1255867
2
15.0
2
92
7
51
48
0
0
51
1.00
1267053--1267105
8
6.6
8
91
0
88
37
24
37
0
1.56
1267053--1267105
12
4.4
12
85
0
70
37
24
37
0
1.56
1272050--1272121
32
2.2
33
87
5
110
43
5
9
41
1.61
1281840--1281887
23
2.0
24
84
4
62
39
20
12
27
1.89
1288828--1288859
7
4.4
7
92
7
55
0
28
40
31
1.57
1288828--1288859
15
2.2
14
94
5
55
0
28
40
31
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1289031--1290153
168
6.7
168
88
2
1389
31
19
18
31
1.95
1290825--1290856
16
2.0
16
100
0
64
37
18
12
31
1.88
1308928--1308974
25
1.9
24
91
4
76
21
6
0
72
1.07
1308934--1308985
20
2.6
20
82
14
63
19
7
1
71
1.20
1311337--1311837
225
2.2
225
96
0
914
31
14
12
40
1.83
1314979--1315022
2
22.0
2
100
0
88
50
0
50
0
1.00
1315491--1316283
396
2.0
395
96
0
1478
39
18
13
29
1.89
1317193--1317235
22
2.0
21
90
4
68
62
30
0
6
1.21
1323106--1323135
2
15.0
2
100
0
60
0
50
0
50
1.00
1324017--1324099
43
2.0
43
97
2
159
37
9
2
50
1.48
1327924--1328465
180
3.0
180
96
0
985
36
17
15
30
1.91
1347432--1347487
27
2.1
27
100
0
112
41
26
17
14
1.88
1347740--1347863
62
2.0
62
100
0
248
41
14
9
33
1.79
1348017--1348056
2
20.0
2
100
0
80
50
0
50
0
1.00
1349229--1349259
1
31.0
1
100
0
62
0
0
100
0
0.00
1352741--1352794
2
27.0
2
100
0
108
0
50
0
50
1.00
1358785--1358809
12
2.1
12
100
0
50
52
16
0
32
1.44
1361642--1361724
42
2.0
42
95
0
148
40
22
14
21
1.90
1365331--1365396
32
2.1
32
97
0
123
15
36
10
37
1.82
1365567--1365600
12
2.8
12
81
0
50
55
0
26
17
1.42

Tables:   1   2   3   4

The End!