Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold3
Parameters: 2 7 7 80 10 50 500
Length:  1336734

Tables:   1   2   3   4   

This is table  4  of  4  ( 390 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1234554--1234597
21
2.1
21
87
8
63
15
15
38
29
1.89
1235604--1235639
11
3.4
11
84
7
56
11
19
27
41
1.85
1235599--1235639
21
2.0
21
95
0
73
9
19
29
41
1.83
1236556--1237548
160
6.1
160
87
5
1239
29
13
20
35
1.92
1239906--1239994
33
2.7
33
96
0
169
40
31
14
13
1.85
1240390--1240453
6
11.0
6
72
12
53
46
1
48
3
1.27
1242559--1242618
2
31.5
2
86
9
90
48
1
50
0
1.11
1249317--1249401
2
42.5
2
100
0
170
50
0
49
0
1.00
1251428--1251557
8
17.7
7
70
21
63
29
16
44
10
1.80
1251435--1251556
22
5.2
22
69
13
82
28
16
45
9
1.79
1251457--1251514
30
1.9
30
92
0
80
29
17
44
8
1.78
1251495--1251557
21
3.0
21
81
4
72
28
17
46
7
1.76
1252546--1252608
8
8.6
8
77
19
57
9
41
15
33
1.80
1252552--1252585
14
2.4
14
95
0
59
8
44
14
32
1.76
1252558--1252608
22
2.3
22
93
0
84
11
41
15
31
1.83
1252571--1252641
30
2.4
30
83
9
92
9
43
14
32
1.78
1252557--1252671
8
15.4
8
68
16
59
11
44
13
30
1.79
1252619--1252667
22
2.2
22
88
0
71
10
44
16
28
1.80
1252588--1252651
30
2.2
28
88
5
92
7
45
15
31
1.75
1252588--1252669
30
2.8
29
82
14
89
10
45
14
29
1.79
1261213--1261254
2
21.0
2
100
0
84
0
50
0
50
1.00
1273593--1273623
15
2.1
15
93
0
53
67
6
6
19
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1294168--1294227
16
3.8
16
88
0
84
10
23
48
18
1.78
1298992--1299396
203
2.0
202
100
0
801
25
21
21
31
1.98
1304642--1305136
69
7.2
69
80
0
578
18
19
21
40
1.92
1304630--1305136
138
3.7
138
93
1
865
18
19
20
40
1.91
1317318--1317421
52
2.0
52
92
0
172
31
25
19
24
1.98
1323129--1323220
46
2.0
46
100
0
184
26
19
19
34
1.96
1334734--1335294
47
11.7
47
89
6
804
30
18
11
39
1.86
1334859--1335226
22
15.8
22
74
18
185
31
18
10
39
1.84

Tables:   1   2   3   4

The End!