Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: scaffold1599 Parameters: 2 7 7 80 10 50 500 Length: 1324113

Tables:   1   2   3   4   

This is table  2  of  4  ( 404 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
385521--385574
28
1.9
28
88
0
81
31
5
31
31
1.81
385580--385714
32
4.2
32
91
0
216
30
6
28
34
1.83
385580--385778
64
2.9
67
88
9
278
29
6
29
34
1.83
385644--385827
75
2.5
73
87
1
260
31
7
27
33
1.85
385676--385757
43
1.9
43
97
0
155
34
7
28
30
1.84
385509--385778
139
2.0
135
89
2
414
30
6
29
33
1.83
391090--391133
6
7.5
6
84
5
54
47
0
18
34
1.49
391933--392069
52
2.6
52
92
0
220
27
23
25
23
2.00
393263--393290
2
14.0
2
100
0
56
50
0
50
0
1.00
399325--399372
2
24.0
2
100
0
96
0
0
50
50
1.00
409415--409597
35
5.4
34
72
12
92
38
6
12
42
1.68
409430--409528
15
6.3
15
68
17
58
42
7
9
41
1.64
409505--409548
20
2.2
20
91
0
70
38
2
13
45
1.56
409521--409563
15
2.9
15
92
0
68
34
0
18
46
1.50
410026--410063
20
2.0
19
85
10
51
39
13
7
39
1.73
429509--429552
2
22.0
2
95
0
79
52
0
47
0
1.00
431912--432046
12
11.2
12
95
0
180
20
25
0
54
1.45
431908--432030
4
30.8
4
98
0
237
23
25
0
51
1.49
438310--438484
25
7.0
25
94
0
296
29
20
24
26
1.99
438602--438679
21
3.7
21
100
0
156
43
10
23
23
1.84
439771--439822
4
13.0
4
91
0
68
0
32
25
42
1.55
439771--439826
12
4.7
12
84
0
76
0
33
25
41
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
439853--440976
166
6.8
166
92
1
1686
29
17
14
38
1.90
439853--440976
330
3.4
331
91
1
1743
29
17
14
38
1.90
439853--440976
496
2.3
496
89
2
1700
29
17
14
38
1.90
449751--449784
1
34.0
1
100
0
68
0
100
0
0
0.00
450451--450485
2
17.5
2
100
0
70
0
48
0
51
1.00
450565--450609
19
2.4
19
92
0
72
20
20
37
22
1.94
461716--461764
2
24.5
2
100
0
98
51
0
48
0
1.00
463833--463884
2
26.0
2
100
0
104
50
0
50
0
1.00
477647--477690
2
22.0
2
100
0
88
0
50
0
50
1.00
486578--486625
2
24.0
2
100
0
96
0
50
0
50
1.00
488571--488617
2
23.5
2
95
0
85
0
51
2
46
1.13
502079--502154
21
3.6
21
81
0
89
42
15
10
31
1.81
502194--502309
21
5.5
21
82
0
124
26
16
20
36
1.94
502194--502309
42
2.8
42
87
0
151
26
16
20
36
1.94
502390--502480
21
4.4
21
78
2
112
40
18
16
24
1.90
502390--502480
41
2.2
41
88
2
128
40
18
16
24
1.90
502708--502759
2
26.0
2
100
0
104
50
0
50
0
1.00
512869--512934
2
33.0
2
100
0
132
50
0
50
0
1.00
513893--514029
26
5.2
26
61
3
76
27
15
15
42
1.86
513928--514014
27
3.3
27
63
3
77
31
11
14
42
1.82
513896--514049
53
2.9
53
100
0
308
29
15
14
40
1.87
513939--514023
27
3.2
27
62
3
73
27
10
15
47
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
513913--514049
26
5.2
26
61
3
76
29
16
13
39
1.88
514351--514391
2
20.5
2
100
0
82
48
0
51
0
1.00
515350--515433
26
3.2
26
62
3
69
26
15
15
42
1.86
515353--515453
53
1.9
53
100
0
202
29
15
13
40
1.86
515370--515454
26
3.2
26
63
3
71
30
18
12
37
1.89
520591--520622
15
2.1
16
94
5
57
21
15
6
56
1.62
522475--522508
18
1.9
18
88
5
52
50
5
20
23
1.70
524726--524787
14
4.9
13
68
20
51
16
11
11
61
1.57
524743--524792
22
2.3
22
96
0
91
12
10
14
64
1.51
524765--524820
29
2.0
29
82
3
69
14
7
19
58
1.58
529884--529921
2
19.0
2
100
0
76
50
0
50
0
1.00
537364--537413
25
2.0
25
100
0
100
24
32
8
36
1.84
543392--543442
2
25.5
2
100
0
102
0
49
0
50
1.00
553589--553613
13
1.9
13
100
0
50
28
0
0
72
0.86
584049--584121
23
3.3
23
73
19
84
26
16
26
31
1.96
599430--600056
165
3.8
167
89
4
903
37
15
18
29
1.91
599430--600056
332
1.9
331
89
3
974
37
15
18
29
1.91
611057--611090
9
3.9
9
88
3
52
32
17
2
47
1.63
612194--612228
2
17.5
2
100
0
70
0
51
0
48
1.00
614694--615087
163
2.4
162
88
3
569
36
13
17
31
1.89
615135--615433
134
2.2
135
84
5
381
28
20
25
26
1.99
633352--633376
13
1.9
13
100
0
50
32
16
8
44
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
641379--641409
13
2.4
13
94
0
53
9
6
0
83
0.79
641408--641443
17
2.1
17
100
0
72
22
11
11
55
1.66
642068--642107
3
13.3
3
89
0
62
40
0
27
32
1.57
651105--651131
2
13.5
2
100
0
54
51
0
0
48
1.00
651683--651710
1
28.0
1
100
0
56
100
0
0
0
0.00
654880--654912
2
16.5
2
100
0
66
48
0
51
0
1.00
656804--656852
21
2.3
21
85
0
62
16
18
28
36
1.92
658210--658286
33
2.4
33
93
2
138
25
15
25
32
1.96
662934--664179
456
2.7
456
97
0
2329
34
12
16
35
1.87
665081--665135
16
3.4
16
82
0
65
29
25
14
30
1.95
684802--684829
1
28.0
1
100
0
56
100
0
0
0
0.00
684963--685001
10
3.8
10
93
6
69
12
7
41
38
1.72
684963--685002
21
1.9
21
100
0
80
15
7
40
37
1.75
701231--701264
2
17.0
2
100
0
68
0
0
50
50
1.00
702405--702743
185
1.8
185
88
0
525
32
14
19
33
1.92
704380--704417
18
2.1
18
95
0
67
23
5
15
55
1.61
713520--713555
2
18.0
2
94
0
63
0
47
0
52
1.00
718080--718153
36
2.1
36
100
0
148
5
16
41
36
1.71
747378--747412
2
17.5
2
100
0
70
51
0
48
0
1.00
751772--751801
15
2.0
15
93
0
51
36
6
13
43
1.70
752355--752440
40
2.1
40
97
0
163
26
24
34
13
1.93
766205--766248
22
2.0
23
86
4
63
56
9
2
31
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
770449--770515
7
9.6
7
83
0
89
35
14
22
26
1.93
784519--784556
18
2.1
18
95
0
67
57
5
2
34
1.35
789293--789346
2
27.0
2
88
0
81
0
44
5
50
1.25
790939--790968
11
2.7
11
89
0
51
26
30
10
33
1.89
791469--791532
2
32.0
2
100
0
128
0
50
0
50
1.00
794822--794885
2
32.0
2
100
0
128
0
0
50
50
1.00
795048--795118
2
35.5
2
100
0
142
0
0
50
49
1.00
794660--795112
226
2.0
225
99
0
897
22
13
26
36
1.91
800913--800961
8
6.1
8
90
0
71
0
34
24
40
1.55
800916--800961
4
11.5
4
90
0
56
0
32
26
41
1.56
809245--809277
1
33.0
1
93
0
57
96
3
0
0
0.20
822558--822950
179
2.2
180
97
0
743
30
15
17
37
1.90
823065--824549
435
3.4
433
83
4
1738
36
15
17
30
1.91
824315--824785
237
2.0
236
88
2
694
34
11
19
34
1.88
827299--827347
2
24.5
2
100
0
98
51
0
48
0
1.00
830024--831378
441
3.1
440
93
1
2247
34
13
16
35
1.88
833917--833980
31
2.1
30
83
11
78
45
15
12
26
1.82
834723--834786
31
2.1
30
83
11
78
45
15
12
26
1.82
839474--839514
17
2.5
17
96
4
75
19
14
26
39
1.90
841365--841390
1
26.0
1
100
0
52
0
100
0
0
0.00
844648--844682
16
2.2
16
94
0
61
40
2
20
37
1.67
845298--845333
17
2.1
17
89
0
54
0
38
13
47
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
845310--845340
12
2.6
12
94
0
53
0
35
16
48
1.46
847324--847791
157
3.0
154
80
6
534
31
17
19
31
1.95
853760--853784
13
1.9
13
100
0
50
56
12
16
16
1.68
860303--860633
166
2.0
164
83
5
418
27
24
13
34
1.93
868935--869007
2
36.5
2
97
0
137
0
49
0
50
1.00
873767--873966
99
2.0
100
98
0
384
34
8
16
42
1.77
874272--874302
15
2.1
15
93
0
53
12
3
0
83
0.75
875678--875711
16
2.1
16
88
0
50
35
14
23
26
1.94
885966--885999
2
17.0
2
100
0
68
0
50
0
50
1.00
898120--898147
13
2.2
13
100
0
56
42
7
14
35
1.73

Tables:   1   2   3   4