Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Sequence: scaffold1599
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1324113
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.30
Warning! 103357 characters in sequence are not A, C, G, or T
File 5 of 4
Found at i:1185337 original size:13 final size:13
Alignment explanation
Indices: 1185321--1185369 Score: 62
Period size: 13 Copynumber: 3.8 Consensus size: 13
1185311 CTTTTTTACA
*
1185321 CCCCTCACTCTCG
1 CCCCTCTCTCTCG
*
1185334 CCCCTCTCTCACG
1 CCCCTCTCTCTCG
* *
1185347 CCCCACTTTCTCG
1 CCCCTCTCTCTCG
1185360 CCCCTCTCTC
1 CCCCTCTCTC
1185370 ACACTCCTCA
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.06, C:0.61, G:0.06, T:0.27
Consensus pattern (13 bp):
CCCCTCTCTCTCG
Found at i:1185350 original size:26 final size:26
Alignment explanation
Indices: 1185288--1185400 Score: 100
Period size: 26 Copynumber: 4.2 Consensus size: 26
1185278 CCTCACCCTA
* * *
1185288 TCACACCCCTCACTCTCTCGTCCCTTTT
1 TCACACCCCTCA--CTCTCGCCCCTCTC
*
1185316 TTACACCCCTCACTCTCGCCCCTCTC
1 TCACACCCCTCACTCTCGCCCCTCTC
* * **
1185342 TCACGCCCCACTTTCTCGCCCCTCTC
1 TCACACCCCTCACTCTCGCCCCTCTC
* *
1185368 TCACACTCCTCACTTTCTCGCTCCTCTC
1 TCACACCCCTCAC--TCTCGCCCCTCTC
1185396 TCACA
1 TCACA
1185401 ATCTACTGTC
Statistics
Matches: 68, Mismatches: 15, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
26 40 0.59
28 28 0.41
ACGTcount: A:0.12, C:0.53, G:0.04, T:0.31
Consensus pattern (26 bp):
TCACACCCCTCACTCTCGCCCCTCTC
Found at i:1185381 original size:28 final size:28
Alignment explanation
Indices: 1185288--1185400 Score: 126
Period size: 28 Copynumber: 4.2 Consensus size: 28
1185278 CCTCACCCTA
* * * *
1185288 TCACACCCCTCACTCTCTCGTCCCTTTT
1 TCACACCCCTCACTTTCTCGCCCCTCTC
*
1185316 TTACACCCCTCAC--TCTCGCCCCTCTC
1 TCACACCCCTCACTTTCTCGCCCCTCTC
*
1185342 TCAC-GCCC-CACTTTCTCGCCCCTCTC
1 TCACACCCCTCACTTTCTCGCCCCTCTC
* *
1185368 TCACACTCCTCACTTTCTCGCTCCTCTC
1 TCACACCCCTCACTTTCTCGCCCCTCTC
1185396 TCACA
1 TCACA
1185401 ATCTACTGTC
Statistics
Matches: 72, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
24 3 0.04
25 3 0.04
26 30 0.42
27 2 0.03
28 34 0.47
ACGTcount: A:0.12, C:0.53, G:0.04, T:0.31
Consensus pattern (28 bp):
TCACACCCCTCACTTTCTCGCCCCTCTC
Found at i:1185527 original size:17 final size:16
Alignment explanation
Indices: 1185497--1185544 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
1185487 CAATCCACTC
1185497 TCGCCCCT--CTCTCT
1 TCGCCCCTCACTCTCT
1185511 ATCGCCCCTCACTCTCT
1 -TCGCCCCTCACTCTCT
*
1185528 TGCGCTCCTCACTCTCT
1 T-CGCCCCTCACTCTCT
1185545 CACACCCCTC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
15 8 0.28
16 1 0.03
17 20 0.69
ACGTcount: A:0.06, C:0.52, G:0.08, T:0.33
Consensus pattern (16 bp):
TCGCCCCTCACTCTCT
Found at i:1185554 original size:17 final size:17
Alignment explanation
Indices: 1185515--1185573 Score: 54
Period size: 17 Copynumber: 3.7 Consensus size: 17
1185505 CTCTCTATCG
** *
1185515 CCCCTCACTCTCTTGCG
1 CCCCTCACTCTCTCACA
*
1185532 CTCCTCACTCTCTCACA
1 CCCCTCACTCTCTCACA
1185549 --CC-C-CTCTCTCACA
1 CCCCTCACTCTCTCACA
1185562 CCCCTCACTCTC
1 CCCCTCACTCTC
1185574 GCACCTCTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
13 10 0.29
14 1 0.03
15 4 0.12
16 1 0.03
17 18 0.53
ACGTcount: A:0.12, C:0.58, G:0.03, T:0.27
Consensus pattern (17 bp):
CCCCTCACTCTCTCACA
Found at i:1185572 original size:15 final size:13
Alignment explanation
Indices: 1185539--1185630 Score: 62
Period size: 13 Copynumber: 7.2 Consensus size: 13
1185529 GCGCTCCTCA
1185539 CTCTCTCACACCC
1 CTCTCTCACACCC
1185552 CTCTCTCACACCC
1 CTCTCTCACACCC
* * * *
1185565 CTCACTCTCGCAC
1 CTCTCTCACACCC
* *
1185578 CTCTTTCACACTC
1 CTCTCTCACACCC
* **
1185591 CTCTTTCACAATC
1 CTCTCTCACACCC
* *
1185604 CACTCT--CGCCC
1 CTCTCTCACACCC
*
1185615 CTCTCTCACAACC
1 CTCTCTCACACCC
1185628 CTC
1 CTC
1185631 GCTCTCTTGC
Statistics
Matches: 59, Mismatches: 18, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
11 7 0.12
13 52 0.88
ACGTcount: A:0.16, C:0.54, G:0.02, T:0.27
Consensus pattern (13 bp):
CTCTCTCACACCC
Found at i:1185806 original size:17 final size:17
Alignment explanation
Indices: 1185780--1185819 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
1185770 CTCTCTCGCT
*
1185780 CCTCTTACACCCCTCAC
1 CCTCTCACACCCCTCAC
1185797 CCTCTCACACCCCTCAC
1 CCTCTCACACCCCTCAC
*
1185814 TCTCTC
1 CCTCTC
1185820 GTCCCTCTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.15, C:0.60, G:0.00, T:0.25
Consensus pattern (17 bp):
CCTCTCACACCCCTCAC
Found at i:1185825 original size:26 final size:26
Alignment explanation
Indices: 1185796--1186001 Score: 157
Period size: 26 Copynumber: 8.1 Consensus size: 26
1185786 ACACCCCTCA
1185796 CCCTCTCACACCCCTCACTCTCTCGTC
1 CCCTCTCACACCCCTCACTCTCTCG-C
* *
1185823 CCTCTTTTACACCCCTCA--CTCTCGC
1 CC-CTCTCACACCCCTCACTCTCTCGC
*
1185848 CCCTCTCTCACGCCC-CACGT-TCTCGC
1 CCCTCTCACAC-CCCTCAC-TCTCTCGC
* *
1185874 TCCTCTCTCACA-CTC-CACTCTCGC-C
1 -CC-CTCTCACACCCCTCACTCTCTCGC
* *
1185899 CCTCTCTCACACTCCTCGCTCTCTCGC
1 CC-CTCTCACACCCCTCACTCTCTCGC
*
1185926 CCCTCTCAC-CCTCTCA--CTCTCGC
1 CCCTCTCACACCCCTCACTCTCTCGC
**
1185949 CCCTCTCAC-GGCC-CACTCTCTCGC
1 CCCTCTCACACCCCTCACTCTCTCGC
* *
1185973 TCCTCTCACACCCCTCGCTCTCTCGC
1 CCCTCTCACACCCCTCACTCTCTCGC
1185999 CCC
1 CCC
1186002 ACTATGTCAC
Statistics
Matches: 141, Mismatches: 23, Indels: 31
0.72 0.12 0.16
Matches are distributed among these distances:
22 2 0.01
23 17 0.12
24 34 0.24
25 15 0.11
26 46 0.33
27 7 0.05
28 20 0.14
ACGTcount: A:0.09, C:0.58, G:0.07, T:0.26
Consensus pattern (26 bp):
CCCTCTCACACCCCTCACTCTCTCGC
Found at i:1185993 original size:24 final size:24
Alignment explanation
Indices: 1185796--1185994 Score: 136
Period size: 24 Copynumber: 7.9 Consensus size: 24
1185786 ACACCCCTCA
1185796 CCCTCTCACACCCCTCACTCTCTCGTC
1 CCCTCTCACACCCCTCA--CTCTCG-C
* *
1185823 CCTCTTTTACACCCCTCACTCTCGC
1 CC-CTCTCACACCCCTCACTCTCGC
*
1185848 CCCTCTCTCACGCCC-CACGTTCTCGC
1 CCCTCTCACAC-CCCTCAC--TCTCGC
*
1185874 TCCTCTCTCACA-CTC-CACTCTCGCC
1 -CC-CTCTCACACCCCTCACTCTCG-C
* *
1185899 CCTCTCTCACACTCCTCGCTCTCTCGC
1 CC-CTCTCACAC-CC-CTCACTCTCGC
*
1185926 CCCTCTCAC-CCTCTCACTCTCGC
1 CCCTCTCACACCCCTCACTCTCGC
** * *
1185949 CCCTCTCACGGCCCACTCTCTCGC
1 CCCTCTCACACCCCTCACTCTCGC
* *
1185973 TCCTCTCACACCCCTCGCTCTC
1 CCCTCTCACACCCCTCACTCTC
1185995 TCGCCCCACT
Statistics
Matches: 139, Mismatches: 21, Indels: 27
0.74 0.11 0.14
Matches are distributed among these distances:
23 18 0.13
24 53 0.38
25 8 0.06
26 25 0.18
27 8 0.06
28 27 0.19
ACGTcount: A:0.10, C:0.57, G:0.07, T:0.27
Consensus pattern (24 bp):
CCCTCTCACACCCCTCACTCTCGC
Found at i:1190634 original size:2 final size:2
Alignment explanation
Indices: 1190627--1190666 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
1190617 TCGGCGTATA
1190627 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1190667 TTATATATAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:1190833 original size:2 final size:2
Alignment explanation
Indices: 1190826--1190870 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
1190816 NNNNNNNNNN
1190826 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1190868 CT C
1 CT C
1190871 CCGACGATGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:1209370 original size:2 final size:2
Alignment explanation
Indices: 1209363--1209442 Score: 160
Period size: 2 Copynumber: 40.0 Consensus size: 2
1209353 GGTTAAAAGT
1209363 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1209405 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1209443 AACATCTTTG
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 78 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:1213866 original size:2 final size:2
Alignment explanation
Indices: 1213859--1213913 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
1213849 CGTGGTACGC
1213859 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1213901 AG AG AG AG AG AG A
1 AG AG AG AG AG AG A
1213914 ATGAATGAAA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1213927 original size:4 final size:4
Alignment explanation
Indices: 1213920--1213971 Score: 50
Period size: 4 Copynumber: 12.8 Consensus size: 4
1213910 GAGAATGAAT
** * **
1213920 GAAA GAAA GAAA GAGT GAAA GAAA GAAA TAAA GAAA GGAGT GAAA GAAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA -GAAA GAAA GAAA
1213969 GAA
1 GAA
1213972 TGAGTGAACA
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
4 35 0.95
5 2 0.05
ACGTcount: A:0.65, C:0.00, G:0.29, T:0.06
Consensus pattern (4 bp):
GAAA
Found at i:1213930 original size:16 final size:16
Alignment explanation
Indices: 1213911--1213947 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
1213901 AGAGAGAGAG
*
1213911 AGAATGAATGAAAGAA
1 AGAAAGAATGAAAGAA
*
1213927 AGAAAGAGTGAAAGAA
1 AGAAAGAATGAAAGAA
1213943 AGAAA
1 AGAAA
1213948 TAAAGAAAGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.65, C:0.00, G:0.27, T:0.08
Consensus pattern (16 bp):
AGAAAGAATGAAAGAA
Found at i:1213939 original size:12 final size:12
Alignment explanation
Indices: 1213924--1213970 Score: 60
Period size: 12 Copynumber: 3.8 Consensus size: 12
1213914 ATGAATGAAA
1213924 GAAAGAAAGAGT
1 GAAAGAAAGAGT
*
1213936 GAAAGAAAGAAAT
1 GAAAGAAAG-AGT
1213949 -AAAGAAAGGAGT
1 GAAAGAAA-GAGT
1213961 GAAAGAAAGA
1 GAAAGAAAGA
1213971 ATGAGTGAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
12 20 0.67
13 10 0.33
ACGTcount: A:0.64, C:0.00, G:0.30, T:0.06
Consensus pattern (12 bp):
GAAAGAAAGAGT
Found at i:1213978 original size:16 final size:15
Alignment explanation
Indices: 1213919--1213979 Score: 69
Period size: 16 Copynumber: 4.3 Consensus size: 15
1213909 AGAGAATGAA
1213919 TGAAAGAAAGAAAGAG
1 TGAAAGAAAG-AAGAG
1213935 TGAAAGAAAGAA-A-
1 TGAAAGAAAGAAGAG
1213948 T-AAAGAAAG--GAG
1 TGAAAGAAAGAAGAG
1213960 TGAAAGAAAGAATGAG
1 TGAAAGAAAGAA-GAG
1213976 TGAA
1 TGAA
1213980 CAGAGGAGAG
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
11 1 0.03
12 9 0.23
13 9 0.23
14 1 0.03
15 2 0.05
16 17 0.44
ACGTcount: A:0.61, C:0.00, G:0.30, T:0.10
Consensus pattern (15 bp):
TGAAAGAAAGAAGAG
Found at i:1218508 original size:2 final size:2
Alignment explanation
Indices: 1218501--1218549 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
1218491 CCCCCTACCC
1218501 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1218543 AG AG AG A
1 AG AG AG A
1218550 CCGGTTCCTG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1231196 original size:31 final size:31
Alignment explanation
Indices: 1231158--1231221 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
1231148 ACTAACCAAT
1231158 TTATCATAGGTGGAAAGGTGGCAGGGGATAG
1 TTATCATAGGTGGAAAGGTGGCAGGGGATAG
1231189 TTATCATAGGTGGAAAGGTGGCAGGGGATAG
1 TTATCATAGGTGGAAAGGTGGCAGGGGATAG
1231220 TT
1 TT
1231222 TCGTACTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.28, C:0.06, G:0.41, T:0.25
Consensus pattern (31 bp):
TTATCATAGGTGGAAAGGTGGCAGGGGATAG
Found at i:1240855 original size:11 final size:11
Alignment explanation
Indices: 1240839--1240863 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
1240829 AGAAATTACA
1240839 TTTTTAAAGAG
1 TTTTTAAAGAG
1240850 TTTTTAAAGAG
1 TTTTTAAAGAG
1240861 TTT
1 TTT
1240864 AGTAAGGGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (11 bp):
TTTTTAAAGAG
Found at i:1255222 original size:2 final size:2
Alignment explanation
Indices: 1255217--1255285 Score: 117
Period size: 2 Copynumber: 36.0 Consensus size: 2
1255207 TAAGTATCCT
1255217 TC TC TC TC TC T- TC TC TC TC -C TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1255257 TC TC TC TC TC T- TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1255286 ATTGATTTTA
Statistics
Matches: 64, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
1 3 0.05
2 61 0.95
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:1259191 original size:4 final size:4
Alignment explanation
Indices: 1259182--1259252 Score: 133
Period size: 4 Copynumber: 17.8 Consensus size: 4
1259172 CAGGTCGCAT
*
1259182 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTCA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
1259230 TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTT
1259253 TCCATTAATT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
4 65 1.00
ACGTcount: A:0.24, C:0.01, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:1262336 original size:15 final size:16
Alignment explanation
Indices: 1262309--1262338 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
1262299 TTATGCACAG
1262309 ACGGACGGACAGACAT
1 ACGGACGGACAGACAT
1262325 ACGGAC-GACAGACA
1 ACGGACGGACAGACA
1262339 AAATGTGATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.40, C:0.27, G:0.30, T:0.03
Consensus pattern (16 bp):
ACGGACGGACAGACAT
Found at i:1272949 original size:44 final size:44
Alignment explanation
Indices: 1272890--1272977 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
1272880 TTTCTCGGTA
1272890 TTAAAGCTCAAAAATTCGAATCTATTATTTTAATATAGTAGTAT
1 TTAAAGCTCAAAAATTCGAATCTATTATTTTAATATAGTAGTAT
*
1272934 TTAAAGCTTAAAAATTCGAATCTATTATTTTAATATAGTAGTAT
1 TTAAAGCTCAAAAATTCGAATCTATTATTTTAATATAGTAGTAT
1272978 AATATCATTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (44 bp):
TTAAAGCTCAAAAATTCGAATCTATTATTTTAATATAGTAGTAT
Found at i:1274627 original size:13 final size:13
Alignment explanation
Indices: 1274609--1274638 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
1274599 GGTCAAGTGG
*
1274609 CAAGTTGTTTAAC
1 CAAGTTGTTAAAC
1274622 CAAGTTGTTAAAC
1 CAAGTTGTTAAAC
1274635 CAAG
1 CAAG
1274639 CAGCATAGCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.30
Consensus pattern (13 bp):
CAAGTTGTTAAAC
Found at i:1274877 original size:21 final size:22
Alignment explanation
Indices: 1274851--1274897 Score: 87
Period size: 21 Copynumber: 2.2 Consensus size: 22
1274841 TATTATCCCC
1274851 TTCGAGCATTATGACGTCAT-T
1 TTCGAGCATTATGACGTCATGT
1274872 TTCGAGCATTATGACGTCATGT
1 TTCGAGCATTATGACGTCATGT
1274894 TTCG
1 TTCG
1274898 TACTCAGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 20 0.80
22 5 0.20
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.38
Consensus pattern (22 bp):
TTCGAGCATTATGACGTCATGT
Found at i:1275024 original size:10 final size:10
Alignment explanation
Indices: 1275009--1275106 Score: 142
Period size: 10 Copynumber: 9.4 Consensus size: 10
1274999 GCCCATTTTT
1275009 ACCCCAATGA
1 ACCCCAATGA
1275019 ACCCCAATGA
1 ACCCCAATGA
1275029 ACCCCAATGA
1 ACCCCAATGA
1275039 TACCCCAATGA
1 -ACCCCAATGA
1275050 ACCCCAATGA
1 ACCCCAATGA
1275060 TACCCCAATGA
1 -ACCCCAATGA
1275071 ACCCCAATGA
1 ACCCCAATGA
* *
1275081 TCCCCAATGTT
1 ACCCCAATG-A
1275092 ACCCCAATGA
1 ACCCCAATGA
1275102 TACCC
1 -ACCC
1275107 AAATACACCT
Statistics
Matches: 80, Mismatches: 4, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
10 48 0.60
11 32 0.40
ACGTcount: A:0.36, C:0.40, G:0.09, T:0.15
Consensus pattern (10 bp):
ACCCCAATGA
Found at i:1275043 original size:21 final size:21
Alignment explanation
Indices: 1275009--1275164 Score: 178
Period size: 21 Copynumber: 7.5 Consensus size: 21
1274999 GCCCATTTTT
1275009 ACCCCAATGA-ACCCCAATGA
1 ACCCCAATGATACCCCAATGA
1275029 ACCCCAATGATACCCCAATGA
1 ACCCCAATGATACCCCAATGA
1275050 ACCCCAATGATACCCCAATGA
1 ACCCCAATGATACCCCAATGA
*
1275071 ACCCCAATGAT-CCCCAATGTT
1 ACCCCAATGATACCCCAATG-A
*
1275092 ACCCCAATGATACCCAAAT--
1 ACCCCAATGATACCCCAATGA
* *
1275111 ACACCTAATGATACCCCTATGA
1 AC-CCCAATGATACCCCAATGA
* *
1275133 TA-CCAAATGATATCCCAATGA
1 -ACCCCAATGATACCCCAATGA
*
1275154 TACCCTAATGA
1 -ACCCCAATGA
1275165 ACTTTGAAAT
Statistics
Matches: 119, Mismatches: 9, Indels: 14
0.84 0.06 0.10
Matches are distributed among these distances:
19 2 0.02
20 32 0.27
21 71 0.60
22 13 0.11
23 1 0.01
ACGTcount: A:0.38, C:0.35, G:0.09, T:0.19
Consensus pattern (21 bp):
ACCCCAATGATACCCCAATGA
Found at i:1275046 original size:31 final size:32
Alignment explanation
Indices: 1275008--1275164 Score: 189
Period size: 31 Copynumber: 5.0 Consensus size: 32
1274998 TGCCCATTTT
1275008 TACCCCAATGAACCCCAATGA-ACCCCAATGA
1 TACCCCAATGAACCCCAATGATACCCCAATGA
1275039 TACCCCAATGAACCCCAATGATACCCCAATGA
1 TACCCCAATGAACCCCAATGATACCCCAATGA
* *
1275071 -ACCCCAATGATCCCCAATGTTACCCCAATGA
1 TACCCCAATGAACCCCAATGATACCCCAATGA
* * *
1275102 TACCCAAAT--ACACCTAATGATACCCCTATGA
1 TACCCCAATGAAC-CCCAATGATACCCCAATGA
* * *
1275133 TA-CCAAATGATATCCCAATGATACCCTAATGA
1 TACCCCAATGA-ACCCCAATGATACCCCAATGA
1275165 ACTTTGAAAT
Statistics
Matches: 109, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
30 7 0.06
31 68 0.62
32 33 0.30
33 1 0.01
ACGTcount: A:0.38, C:0.34, G:0.09, T:0.19
Consensus pattern (32 bp):
TACCCCAATGAACCCCAATGATACCCCAATGA
Found at i:1275086 original size:52 final size:53
Alignment explanation
Indices: 1275008--1275164 Score: 196
Period size: 52 Copynumber: 3.0 Consensus size: 53
1274998 TGCCCATTTT
*
1275008 TACCCCAATGAACCCCAATGAACCCCAATGATACCCCAATGA-ACCCCAATGA
1 TACCCCAATGAACCCCAATGATCCCCAATGATACCCCAATGATACCCCAATGA
*
1275060 TACCCCAATGAACCCCAATGATCCCCAATGTTACCCCAATGATA-CCCAA--A
1 TACCCCAATGAACCCCAATGATCCCCAATGATACCCCAATGATACCCCAATGA
* * * * * *
1275110 TACACCTAATGATACCCCTATGATACCAAATGATATCCCAATGATACCCTAATGA
1 TAC-CCCAATGA-ACCCCAATGATCCCCAATGATACCCCAATGATACCCCAATGA
1275165 ACTTTGAAAT
Statistics
Matches: 90, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
50 4 0.04
51 7 0.08
52 73 0.81
53 5 0.06
55 1 0.01
ACGTcount: A:0.38, C:0.34, G:0.09, T:0.19
Consensus pattern (53 bp):
TACCCCAATGAACCCCAATGATCCCCAATGATACCCCAATGATACCCCAATGA
Found at i:1278193 original size:2 final size:2
Alignment explanation
Indices: 1278188--1278306 Score: 127
Period size: 2 Copynumber: 58.0 Consensus size: 2
1278178 TATATATATC
1278188 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * *
1278230 AG AG AG AG AG AG ATC ATG -G AG AG AG AG AG ATC ATG -G AA AG AG
1 AG AG AG AG AG AG A-G A-G AG AG AG AG AG AG A-G A-G AG AG AG AG
*
1278272 AG AG AG ATC ATG -G AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG A-G A-G AG AG AG AG AG AG AG AG AG AG AG AG
1278307 TTAGTTAACA
Statistics
Matches: 103, Mismatches: 8, Indels: 12
0.84 0.07 0.10
Matches are distributed among these distances:
1 3 0.03
2 94 0.91
3 6 0.06
ACGTcount: A:0.47, C:0.03, G:0.45, T:0.05
Consensus pattern (2 bp):
AG
Found at i:1278253 original size:17 final size:17
Alignment explanation
Indices: 1278231--1278295 Score: 112
Period size: 17 Copynumber: 3.7 Consensus size: 17
1278221 GAGAGAGAGA
1278231 GAGAGAGAGAGATCATG
1 GAGAGAGAGAGATCATG
1278248 GAGAGAGAGAGATCATG
1 GAGAGAGAGAGATCATG
1278265 GAAAGAGAGAGAGATCATG
1 G--AGAGAGAGAGATCATG
1278284 GAGAGAGAGAGA
1 GAGAGAGAGAGA
1278296 GAGAGAGAGA
Statistics
Matches: 46, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
17 29 0.63
19 17 0.37
ACGTcount: A:0.45, C:0.05, G:0.42, T:0.09
Consensus pattern (17 bp):
GAGAGAGAGAGATCATG
Found at i:1280677 original size:11 final size:11
Alignment explanation
Indices: 1280661--1280745 Score: 149
Period size: 11 Copynumber: 8.0 Consensus size: 11
1280651 ATTTCAAAGT
1280661 TCATTGGGGTA
1 TCATTGGGGTA
1280672 TCATTGGGGT-
1 TCATTGGGGTA
1280682 TCATTGGGGTA
1 TCATTGGGGTA
1280693 TCATTGGGGTA
1 TCATTGGGGTA
1280704 TCATTGGGGT-
1 TCATTGGGGTA
1280714 TCATTGGGGTA
1 TCATTGGGGTA
1280725 TCATTGGGGT-
1 TCATTGGGGTA
1280735 TCATTGGGGTA
1 TCATTGGGGTA
1280746 AAAAGACGCA
Statistics
Matches: 71, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
10 30 0.42
11 41 0.58
ACGTcount: A:0.15, C:0.09, G:0.38, T:0.38
Consensus pattern (11 bp):
TCATTGGGGTA
Found at i:1280685 original size:21 final size:21
Alignment explanation
Indices: 1280661--1280745 Score: 145
Period size: 21 Copynumber: 4.0 Consensus size: 21
1280651 ATTTCAAAGT
1280661 TCATTGGGGTATCATTGGGGT-
1 TCATTGGGGT-TCATTGGGGTA
1280682 TCATTGGGGTATCATTGGGGTA
1 TCATTGGGGT-TCATTGGGGTA
1280704 TCATTGGGGTTCATTGGGGTA
1 TCATTGGGGTTCATTGGGGTA
1280725 TCATTGGGGTTCATTGGGGTA
1 TCATTGGGGTTCATTGGGGTA
1280746 AAAAGACGCA
Statistics
Matches: 63, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
21 53 0.84
22 10 0.16
ACGTcount: A:0.15, C:0.09, G:0.38, T:0.38
Consensus pattern (21 bp):
TCATTGGGGTTCATTGGGGTA
Found at i:1280697 original size:32 final size:32
Alignment explanation
Indices: 1280661--1280744 Score: 161
Period size: 32 Copynumber: 2.7 Consensus size: 32
1280651 ATTTCAAAGT
1280661 TCATTGGGGTATCATTGGGGTTCATTGGGGTA
1 TCATTGGGGTATCATTGGGGTTCATTGGGGTA
1280693 TCATTGGGGTATCATTGGGGTTCATTGGGGTA
1 TCATTGGGGTATCATTGGGGTTCATTGGGGTA
1280725 TCATTGGGGT-TCATTGGGGT
1 TCATTGGGGTATCATTGGGGT
1280745 AAAAAGACGC
Statistics
Matches: 52, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
31 10 0.19
32 42 0.81
ACGTcount: A:0.14, C:0.10, G:0.38, T:0.38
Consensus pattern (32 bp):
TCATTGGGGTATCATTGGGGTTCATTGGGGTA
Found at i:1310093 original size:21 final size:21
Alignment explanation
Indices: 1310069--1310133 Score: 80
Period size: 20 Copynumber: 3.1 Consensus size: 21
1310059 GCTTGAGATG
1310069 TGATGTAGAAGGCCGATGGCC
1 TGATGTAGAAGGCCGATGGCC
*
1310090 TGATATGTAGTA-GCCGATGG-C
1 TG--ATGTAGAAGGCCGATGGCC
*
1310111 TGATGTGGAAGGCCGATGGCC
1 TGATGTAGAAGGCCGATGGCC
1310132 TG
1 TG
1310134 TGTGCGTGTG
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
19 6 0.16
20 8 0.22
21 8 0.22
22 8 0.22
23 7 0.19
ACGTcount: A:0.22, C:0.17, G:0.38, T:0.23
Consensus pattern (21 bp):
TGATGTAGAAGGCCGATGGCC
Found at i:1310107 original size:22 final size:22
Alignment explanation
Indices: 1310041--1310114 Score: 69
Period size: 28 Copynumber: 3.1 Consensus size: 22
1310031 ATCTAGAAAA
*
1310041 GATATGTAGTAGCCGATGGCTT
1 GATATGTAGTAGCCGATGGCCT
*
1310063 GAGATGTGATGTAGAAGGCCGATGGCCT
1 --GA--T-ATGTAGTA-GCCGATGGCCT
1310091 GATATGTAGTAGCCGATGG-CT
1 GATATGTAGTAGCCGATGGCCT
1310112 GAT
1 GAT
1310115 GTGGAAGGCC
Statistics
Matches: 43, Mismatches: 3, Indels: 11
0.75 0.05 0.19
Matches are distributed among these distances:
21 5 0.12
22 8 0.19
23 7 0.16
24 3 0.07
26 3 0.07
27 7 0.16
28 10 0.23
ACGTcount: A:0.24, C:0.14, G:0.35, T:0.27
Consensus pattern (22 bp):
GATATGTAGTAGCCGATGGCCT
Found at i:1310351 original size:18 final size:17
Alignment explanation
Indices: 1310313--1310352 Score: 62
Period size: 17 Copynumber: 2.3 Consensus size: 17
1310303 CTTGATCTGA
*
1310313 TAATACACCTTCATGAC
1 TAATACACCTTCATAAC
1310330 TAATACACCTTCATCAAC
1 TAATACACCTTCAT-AAC
1310348 TAATA
1 TAATA
1310353 TAAGAAACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.40, C:0.28, G:0.03, T:0.30
Consensus pattern (17 bp):
TAATACACCTTCATAAC
Found at i:1311875 original size:7 final size:7
Alignment explanation
Indices: 1311861--1311891 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
1311851 CTTCGTCCGT
1311861 CGTCGTG
1 CGTCGTG
*
1311868 CGTTGTG
1 CGTCGTG
1311875 CGTCGTG
1 CGTCGTG
1311882 CGTCGTG
1 CGTCGTG
1311889 CGT
1 CGT
1311892 TAACAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.00, C:0.26, G:0.42, T:0.32
Consensus pattern (7 bp):
CGTCGTG
Found at i:1312341 original size:168 final size:168
Alignment explanation
Indices: 1312097--1312851 Score: 1113
Period size: 168 Copynumber: 4.5 Consensus size: 168
1312087 CATGTGAGGA
* * * * *
1312097 AAAAACTGAATGCATTG-TTATGATGTCCATGAGGCCCTCTACCAAAATTGTGAAATTTATGGCC
1 AAAAACTAAATGCA-TGATTATGATGTCCATGAAGCCCTCTACCTAAATTGTGAAATTCATGACC
* *
1312161 CCTGGGTCAGGGGTTCTGGCTCTAGGGTGGGGCCAATATGGCCATATAGTAAAAATGTATTAAAT
65 CCTGGGTCAGGGGTTCAGGCTCTAGGGTGGGGCCAATATGGCCAAATAGTAAAAATGTATTAAAT
*
1312226 CTTAGAAAATCTTCTTCTCTACTCTCATATATATTTGTT
130 CTTAGAAAATCTTCTTCTCTACTCCCATATATATTTGTT
*
1312265 AAATACTAAATGCATGATTATGATGTCCATGAAGCCCTCTACCTAAATTGTGAAATTCATGACCC
1 AAAAACTAAATGCATGATTATGATGTCCATGAAGCCCTCTACCTAAATTGTGAAATTCATGACCC
1312330 CTGGGTCAGGGGTTCAGGCTCTAGGGTGGGGCCAATATGGCCAAATAGTAAAAATGTATTAAATC
66 CTGGGTCAGGGGTTCAGGCTCTAGGGTGGGGCCAATATGGCCAAATAGTAAAAATGTATTAAATC
1312395 TTAGAAAATCTTCTTCTCTACTCCCATATATATTTGTT
131 TTAGAAAATCTTCTTCTCTACTCCCATATATATTTGTT
* *
1312433 AAAAACTAAATGCATGGTTATGATGTCCATGAAGCCCTCTACCTTAATTGTGAAATTCATGACCC
1 AAAAACTAAATGCATGATTATGATGTCCATGAAGCCCTCTACCTAAATTGTGAAATTCATGACCC
* *
1312498 CTCGGTCAGGGGTTCAGGCTCTAGGGTGGGGCCGATATGGCCAAATAGTAAAAATGTATTAAATC
66 CTGGGTCAGGGGTTCAGGCTCTAGGGTGGGGCCAATATGGCCAAATAGTAAAAATGTATTAAATC
1312563 TTAGAAAATCTTCTTCTCTACTCCCATATATATTTGTT
131 TTAGAAAATCTTCTTCTCTACTCCCATATATATTTGTT
* *
1312601 AAAAACTAAATGCATGATTATGATGTCCATGAGGCTCTCTA-CTAAAATTGTGAAATTCATGACC
1 AAAAACTAAATGCATGATTATGATGTCCATGAAGCCCTCTACCT-AAATTGTGAAATTCATGACC
** * * * *
1312665 CCTTTGTTAGGTGTTCATGCTCTAGGGTGGGGCCAATATGGCCATATAGTAAAAATG-ATTTAAA
65 CCTGGGTCAGGGGTTCAGGCTCTAGGGTGGGGCCAATATGGCCAAATAGTAAAAATGTA-TTAAA
* * * * ** **
1312729 TCTTAAAAAATCTTCTTCTCTACTCCCACACATGTGGGCA
129 TCTTAGAAAATCTTCTTCTCTACTCCCATATATATTTGTT
* * * * * * * *
1312769 AAAAACTGAATACATGGTTATGATATCCA-CAATCTCCTTTACCTAAATTGTGAAATTCATGGCC
1 AAAAACTAAATGCATGATTATGATGTCCATGAAGC-CCTCTACCTAAATTGTGAAATTCATGACC
1312833 CCTGGGTCAGGGGTTCAGG
65 CCTGGGTCAGGGGTTCAGG
1312852 ACATGAGGGG
Statistics
Matches: 534, Mismatches: 48, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
167 7 0.01
168 525 0.98
169 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (168 bp):
AAAAACTAAATGCATGATTATGATGTCCATGAAGCCCTCTACCTAAATTGTGAAATTCATGACCC
CTGGGTCAGGGGTTCAGGCTCTAGGGTGGGGCCAATATGGCCAAATAGTAAAAATGTATTAAATC
TTAGAAAATCTTCTTCTCTACTCCCATATATATTTGTT
Found at i:1316875 original size:17 final size:17
Alignment explanation
Indices: 1316850--1316882 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
1316840 AGGAAAATAC
*
1316850 CAATGTCCTATAAGAAT
1 CAATATCCTATAAGAAT
1316867 CAATATCCTATAAGAA
1 CAATATCCTATAAGAA
1316883 AATTGTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.18, G:0.09, T:0.27
Consensus pattern (17 bp):
CAATATCCTATAAGAAT
Found at i:1317361 original size:14 final size:14
Alignment explanation
Indices: 1317342--1317382 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
1317332 GAAGATATTG
1317342 AATCTCGAATTTCA
1 AATCTCGAATTTCA
* * *
1317356 AATCTCGTATTCCG
1 AATCTCGAATTTCA
1317370 AATCTCGAATTTC
1 AATCTCGAATTTC
1317383 GTATTTCGAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.37
Consensus pattern (14 bp):
AATCTCGAATTTCA
Found at i:1318558 original size:13 final size:13
Alignment explanation
Indices: 1318540--1318564 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1318530 GTTAAGTATG
1318540 TCAAAATGGCGAT
1 TCAAAATGGCGAT
1318553 TCAAAATGGCGA
1 TCAAAATGGCGA
1318565 ACAGCCAATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.20
Consensus pattern (13 bp):
TCAAAATGGCGAT
Found at i:1321016 original size:166 final size:166
Alignment explanation
Indices: 1320496--1321058 Score: 824
Period size: 166 Copynumber: 3.4 Consensus size: 166
1320486 GGTATTTTTC
* * * * * * * * *
1320496 AAAAATCTTCTTCTCAAAAACTATTCGGCCTGAAAAGCTTAAACTTGTGTGGAGGCATCATTAGG
1 AAAAATCTTCTTCTCAAAAACTATTAGGCCAGGAAAGCTCAAATTTGAGTGGAAGCATCCTCAGG
* *
1320561 TAGTGTAGATTCAAATTTGTTCAAATCATGG-TCCCTGGGGGTAGGGTGGGGCCACAATAAGGGG
66 TAGTGTAGATTCAAGTTTGTTCAAATCATGGTTCCC-GGGGGTAGGGTGGGGCCACAATTAGGGG
* *
1320625 ATCATGTTTTACATAGGAATATATAGAGAACATCTTT
130 ATCAAGTTTTACATAGGAATATATAGAGAAAATCTTT
* * * * *
1320662 AAAAATCTTCTGCTCAAAAACTATAAGGCCAGGAAAGCTCAAATTTAAATGGAAACATCCTCAGG
1 AAAAATCTTCTTCTCAAAAACTATTAGGCCAGGAAAGCTCAAATTTGAGTGGAAGCATCCTCAGG
1320727 TAGTGTAGATTCAAGTTTGTTCAAATCATTATGATAGTTCCCGGGGGTAGGGTGGGGCCACAATT
66 TAGTGTAGATTCAAGTTTGTTCAAATC---ATG---GTTCCCGGGGGTAGGGTGGGGCCACAATT
* *
1320792 GGGGGATCAAGTTTAACATAGGAATATATAGAGAAAATCTTT
125 AGGGGATCAAGTTTTACATAGGAATATATAGAGAAAATCTTT
* *
1320834 AAAAATCTTCTTCTCAAAAACTTTTTGGCCAGGAAAGCTCAAATTTGAGTGGAAGCATCCTCAGG
1 AAAAATCTTCTTCTCAAAAACTATTAGGCCAGGAAAGCTCAAATTTGAGTGGAAGCATCCTCAGG
* *
1320899 TAGTGTAGATTCAAGTTTGTTCAAATCATGGTTCCCGGGGGTAGGGTGGGGCAACAATTAGGGGT
66 TAGTGTAGATTCAAGTTTGTTCAAATCATGGTTCCCGGGGGTAGGGTGGGGCCACAATTAGGGGA
1320964 TCAAGTTTTACATAGGAATATATAGAGAAAATCTTT
131 TCAAGTTTTACATAGGAATATATAGAGAAAATCTTT
*
1321000 AAAAATCTTCTTCTC-AAAACTATTAGGCCAGGAAAGCCCAAATTTGAGTGGAAGCATCC
1 AAAAATCTTCTTCTCAAAAACTATTAGGCCAGGAAAGCTCAAATTTGAGTGGAAGCATCC
1321059 CCAGATCATA
Statistics
Matches: 356, Mismatches: 34, Indels: 15
0.88 0.08 0.04
Matches are distributed among these distances:
165 41 0.12
166 159 0.45
169 6 0.02
172 146 0.41
173 4 0.01
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (166 bp):
AAAAATCTTCTTCTCAAAAACTATTAGGCCAGGAAAGCTCAAATTTGAGTGGAAGCATCCTCAGG
TAGTGTAGATTCAAGTTTGTTCAAATCATGGTTCCCGGGGGTAGGGTGGGGCCACAATTAGGGGA
TCAAGTTTTACATAGGAATATATAGAGAAAATCTTT
Done.