oyster.v9_M.fa.s22.2.7.7.80.10.50.500.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold433
Parameters: 2 7 7 80 10 50 500
Length:  1285081

Tables:   1   2   3   4   

This is table  4  of  4  ( 437 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1087118--1087801	340	2.0	338	86	3	946	32	25	16	24	1.96
1099935--1099960	11	2.4	11	100	0	52	42	19	11	26	1.85
1114637--1114900	34	7.8	34	92	0	415	30	11	21	36	1.89
1115187--1115664	34	14.1	34	85	4	545	30	11	23	33	1.91
1115199--1115664	135	3.4	135	82	4	580	30	11	23	34	1.90
1115208--1115664	169	2.7	168	84	5	582	31	11	23	34	1.90
1120101--1120134	2	17.0	2	100	0	68	50	0	50	0	1.00
1121706--1121755	3	17.3	3	83	8	68	68	30	2	0	1.01
1126279--1126338	2	30.0	2	89	0	93	0	48	3	48	1.18
1133037--1133075	2	19.5	2	100	0	78	0	48	0	51	1.00
1137383--1138009	166	3.8	166	87	0	889	26	24	15	33	1.95
1137948--1138105	80	2.0	79	96	0	280	28	24	14	31	1.94
1139326--1139360	16	2.3	15	95	5	61	40	25	34	0	1.56
1140823--1140847	13	1.9	13	100	0	50	40	28	0	32	1.57
1143282--1143315	18	1.9	18	88	5	52	32	11	2	52	1.53
1143478--1143605	63	2.0	63	93	0	220	36	11	10	41	1.76
1143639--1143704	2	33.5	2	93	3	116	46	1	51	0	1.10
1149233--1149263	2	15.5	2	100	0	62	48	0	51	0	1.00
1151677--1151711	14	2.5	14	90	0	52	34	28	11	25	1.91
1153767--1153801	4	8.8	4	87	0	52	2	25	42	28	1.69
1153767--1153801	12	2.9	12	95	0	61	2	25	42	28	1.69
1159905--1159970	2	33.5	2	83	8	73	57	1	40	0	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1161444--1161474	16	1.9	16	93	0	53	48	22	25	3	1.66
1167491--1167528	2	19.0	2	100	0	76	50	0	50	0	1.00
1175429--1175470	20	2.1	20	90	0	66	50	0	2	47	1.14
1176175--1176246	36	2.0	36	97	0	135	61	8	12	18	1.55
1181721--1181775	10	5.3	10	82	8	65	36	34	20	9	1.84
1181717--1181775	21	2.8	21	97	0	109	37	32	20	10	1.86
1181717--1181772	11	5.3	11	82	8	71	37	30	21	10	1.87
1185483--1185526	23	1.9	23	85	0	61	29	4	22	43	1.73
1186288--1186338	4	12.8	4	91	0	84	0	45	25	29	1.54
1186349--1187044	147	4.8	147	87	2	938	30	19	20	29	1.97
1196456--1196489	16	2.1	16	88	0	50	41	20	20	17	1.91
1197000--1197068	34	2.1	33	91	2	111	40	11	13	34	1.80
1199468--1199515	25	1.9	25	86	0	69	41	20	6	31	1.77
1203356--1203408	25	2.1	25	100	0	106	18	22	16	41	1.90
1209791--1209824	12	2.8	12	86	0	50	35	26	35	2	1.72
1209791--1209832	8	5.4	8	77	5	50	35	26	35	2	1.70
1216594--1216703	54	2.0	54	98	0	211	37	22	20	20	1.95
1218673--1218769	18	5.2	18	82	7	104	50	24	5	19	1.68
1218688--1218853	21	8.2	21	84	7	209	45	25	5	23	1.74
1218669--1218850	21	9.3	18	78	13	112	46	25	6	22	1.75
1226600--1226627	2	14.0	2	100	0	56	50	0	50	0	1.00
1226837--1226913	21	3.9	21	73	14	58	53	15	28	2	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1226827--1226917	14	6.4	14	70	17	62	52	15	29	2	1.54
1228026--1228071	14	3.2	14	84	3	56	54	19	23	2	1.55
1238075--1238534	161	2.8	161	84	3	568	30	14	19	36	1.91
1238675--1238709	18	1.9	18	94	0	61	45	20	22	11	1.82
1239554--1239605	4	13.0	4	85	0	50	1	32	25	40	1.67
1239556--1239612	20	2.9	20	91	0	87	1	35	24	38	1.66
1239559--1239609	16	3.2	16	85	0	66	1	35	25	37	1.67
1242302--1242401	50	2.0	49	92	1	164	39	7	19	35	1.78
1247811--1247850	20	2.0	20	90	0	62	22	2	12	62	1.42
1249928--1249956	14	2.0	15	93	6	51	24	13	20	41	1.89
1250326--1250367	10	4.2	10	93	0	75	40	16	21	21	1.91
1250693--1250745	8	6.9	8	79	16	67	11	0	1	86	0.64
1250693--1250781	38	2.4	36	85	7	108	12	0	5	82	0.84
1250692--1250794	50	2.1	47	82	5	116	11	0	5	81	0.91
1252174--1252214	10	4.1	10	93	0	73	19	17	19	43	1.88
1252733--1252776	8	5.5	8	88	0	61	0	40	25	34	1.56
1252733--1252767	12	2.9	12	91	0	61	0	42	25	31	1.55
1252724--1252763	4	10.0	4	84	10	55	2	47	25	25	1.64
1269300--1269603	156	1.9	156	93	1	520	39	17	17	25	1.91
1271855--1271882	13	2.2	13	100	0	56	14	7	21	57	1.61
1278000--1278844	166	5.2	164	84	5	1011	35	15	21	27	1.94
1279211--1279273	21	3.0	21	80	0	81	38	15	15	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1279355--1279415	21	2.9	21	90	0	68	26	19	16	37	1.93
1279355--1279436	42	2.0	42	85	0	110	28	19	17	35	1.94
1279377--1279520	21	6.9	21	79	10	116	34	15	15	33	1.90
1279463--1279538	21	3.8	20	84	6	84	34	15	15	34	1.90
1279527--1279603	21	3.7	21	75	6	84	31	20	12	35	1.91
1279523--1279615	42	2.2	42	90	0	141	32	18	15	34	1.92
1279592--1279667	21	3.7	21	82	7	93	38	14	19	27	1.91
1279592--1279668	40	1.9	40	86	0	109	38	14	19	27	1.90
1279746--1279824	21	3.9	20	89	1	95	27	13	15	43	1.85
1280670--1280704	18	1.9	18	94	0	61	34	31	25	8	1.86
1282809--1282890	41	2.0	42	87	2	121	53	4	8	32	1.53

Tables:   1   2   3   4

The End!