oyster.v9_M.fa.s24.2.7.7.80.10.50.500.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold211
Parameters: 2 7 7 80 10 50 500
Length:  1275876

Tables:   1   2   3   4   

This is table  4  of  4  ( 441 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1080103--1080446	29	11.9	29	82	2	395	38	6	26	29	1.80
1082177--1082322	62	2.4	62	95	0	265	23	13	25	38	1.90
1084894--1084981	26	3.4	26	85	0	113	36	5	31	26	1.80
1088582--1088615	16	2.1	17	88	5	52	58	14	5	20	1.57
1088624--1088677	22	2.5	22	77	14	58	51	11	7	29	1.64
1089704--1090786	168	6.4	168	87	2	1465	30	19	18	31	1.96
1092087--1093146	20	52.7	20	91	1	1661	33	16	19	30	1.94
1093412--1093722	25	12.3	25	78	8	297	29	26	12	32	1.92
1093409--1093722	50	6.2	50	82	5	371	29	25	12	32	1.92
1093412--1093722	75	4.1	75	85	3	415	29	26	12	32	1.92
1094024--1094091	25	2.7	25	86	4	93	32	10	13	44	1.77
1094024--1094101	14	6.0	14	71	17	69	34	11	12	41	1.80
1095927--1095981	2	27.5	2	100	0	110	50	0	49	0	1.00
1101324--1101388	2	32.0	2	90	3	103	47	3	47	1	1.27
1103511--1103548	2	19.0	2	100	0	76	50	0	50	0	1.00
1108702--1108739	14	2.7	14	88	11	60	39	21	13	26	1.89
1119387--1119438	17	3.1	16	75	5	50	48	9	19	23	1.78
1119628--1119684	17	3.4	17	80	0	60	43	5	21	29	1.74
1120094--1120140	17	2.8	16	84	9	58	42	8	23	25	1.82
1120170--1120334	26	6.3	26	99	0	321	41	7	15	35	1.74
1135156--1135194	2	19.5	2	100	0	78	0	48	0	51	1.00
1136271--1136313	9	4.7	9	79	2	50	0	23	32	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1136266--1136313	6	7.7	6	83	6	51	0	22	31	45	1.53
1136785--1136823	2	19.5	2	100	0	78	0	51	0	48	1.00
1140205--1140263	21	2.8	21	84	2	73	11	23	22	42	1.86
1151953--1152009	28	2.0	28	96	0	105	29	12	17	40	1.86
1163903--1163934	2	16.0	2	100	0	64	0	50	0	50	1.00
1164419--1164508	30	3.0	29	87	9	128	26	38	7	26	1.83
1165097--1165152	28	2.0	29	92	3	96	46	17	14	21	1.84
1167334--1167375	2	21.0	2	100	0	84	50	0	50	0	1.00
1168016--1168081	2	33.0	2	100	0	132	50	0	50	0	1.00
1169785--1169840	24	2.3	24	93	0	103	14	35	14	35	1.86
1170618--1170763	47	3.1	47	98	0	283	37	13	8	40	1.75
1172709--1172738	2	15.0	2	100	0	60	0	0	50	50	1.00
1176627--1176809	92	2.0	91	100	0	357	32	19	16	30	1.94
1176639--1176785	49	3.1	49	61	11	126	34	19	14	31	1.92
1181936--1181977	20	2.1	20	100	0	84	50	9	9	30	1.67
1190194--1190236	19	2.3	19	95	0	77	25	13	23	37	1.92
1196185--1196818	47	13.7	47	90	4	920	25	25	21	27	2.00
1196185--1196805	138	4.5	138	92	3	966	25	25	21	27	1.99
1200459--1200657	28	7.1	28	91	1	292	43	10	22	23	1.83
1200459--1200689	56	4.1	56	87	3	306	43	10	21	24	1.84
1200459--1200689	84	2.8	84	81	6	281	43	10	21	24	1.84
1202191--1202234	2	23.0	2	88	9	65	0	45	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1202191--1202234	11	4.2	11	88	5	65	0	45	0	54	0.99
1202193--1202231	13	3.0	13	92	0	69	0	43	0	56	0.99
1202190--1202234	15	2.9	16	83	12	67	0	44	0	55	0.99
1202476--1202533	2	29.0	2	100	0	116	0	50	0	50	1.00
1208939--1209037	31	3.3	30	91	5	155	32	33	4	30	1.76
1216892--1217492	25	23.8	25	80	13	698	40	14	15	28	1.87
1217092--1217204	58	1.9	58	96	0	208	40	14	15	30	1.86
1217175--1217296	44	3.0	42	74	24	136	40	13	16	30	1.86
1217203--1217391	44	3.8	55	82	15	158	40	14	15	30	1.87
1216942--1217350	102	4.0	105	91	4	567	40	14	15	29	1.86
1217277--1217409	44	3.0	44	96	0	248	39	14	16	29	1.88
1217146--1217493	171	2.0	168	88	6	513	40	14	15	29	1.87
1217248--1217419	69	2.5	66	84	11	206	40	14	15	29	1.86
1217361--1217474	58	2.0	58	92	0	192	42	16	14	26	1.87
1218131--1219170	45	23.1	45	89	0	1413	40	20	17	21	1.91
1226908--1226951	2	22.0	2	86	9	54	0	45	2	52	1.13
1227077--1227181	10	10.1	10	76	11	104	45	22	20	11	1.82
1227077--1227181	31	3.3	32	85	13	139	45	22	20	11	1.82
1227077--1227181	21	5.0	20	76	12	104	45	22	20	11	1.82
1227108--1227194	22	4.0	21	80	8	95	47	22	19	10	1.80
1227339--1227697	183	2.0	182	93	3	625	36	20	12	30	1.90
1227999--1228072	10	7.0	10	79	11	76	10	18	18	51	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1228001--1228103	32	3.2	32	86	4	138	12	19	19	48	1.80
1228023--1228106	10	8.1	10	74	12	80	11	19	22	46	1.82
1228000--1228075	22	3.5	22	81	13	88	10	18	21	50	1.76
1240845--1240931	24	3.8	24	86	4	108	39	16	13	31	1.87
1240740--1241062	22	15.0	21	76	14	196	36	13	17	31	1.89
1240916--1241067	64	2.3	65	85	5	200	34	13	16	36	1.87
1251587--1251620	16	2.1	16	88	0	50	38	0	11	50	1.39
1256970--1257407	167	2.8	158	85	8	561	30	23	13	32	1.94
1257093--1257440	167	2.1	167	91	4	571	30	22	14	32	1.94
1259870--1259961	16	5.5	16	80	10	103	25	25	25	25	2.00
1259974--1260161	93	2.0	93	97	0	358	38	12	14	34	1.85
1262569--1262593	1	25.0	1	100	0	50	0	0	100	0	0.00
1263557--1263581	11	2.3	11	100	0	50	40	12	0	48	1.40
1268009--1268038	15	2.0	15	100	0	60	6	66	20	6	1.38
1269680--1269711	16	2.0	16	100	0	64	43	25	25	6	1.77

Tables:   1   2   3   4

The End!