Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: scaffold601 Parameters: 2 7 7 80 10 50 500 Length: 1259944

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 521 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
953279--953327
22
2.2
22
85
7
64
51
6
24
18
1.69
961345--961374
12
2.5
12
94
0
51
0
0
13
86
0.57
963135--963449
21
15.0
21
87
3
391
33
18
12
36
1.88
963139--963449
42
7.4
42
92
0
442
33
18
12
36
1.88
964236--964296
2
30.5
2
86
0
77
0
40
0
59
0.98
964551--964603
2
26.5
2
100
0
106
0
50
0
49
1.00
964933--964980
2
24.0
2
100
0
96
0
50
0
50
1.00
996169--996209
2
20.5
2
100
0
82
0
51
0
48
1.00
999763--999810
2
24.0
2
100
0
96
50
0
50
0
1.00
999810--999858
2
24.5
2
91
0
80
0
0
55
44
0.99
1001204--1001317
50
2.3
50
85
0
156
29
16
14
38
1.89
1011331--1011355
2
12.5
2
100
0
50
48
0
0
52
1.00
1012398--1012482
2
42.5
2
95
0
143
47
0
52
0
1.00
1017671--1017705
17
2.1
17
100
0
70
54
17
5
22
1.64
1018073--1018210
53
2.6
53
88
0
204
33
13
15
37
1.86
1018439--1018622
53
3.5
53
84
1
190
41
15
10
32
1.81
1019405--1019439
17
2.1
17
88
0
52
25
8
17
48
1.75
1019291--1019509
84
2.6
83
87
1
296
32
15
13
38
1.87
1029435--1029483
25
2.0
25
100
0
98
61
16
12
10
1.57
1030219--1030258
16
2.4
16
91
8
62
60
5
35
0
1.19
1030240--1030271
12
2.7
12
95
0
55
62
9
28
0
1.26
1040371--1040431
3
20.3
3
100
0
122
34
0
32
32
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1046740--1046779
20
2.0
20
85
0
53
35
17
17
30
1.93
1048936--1048982
2
23.5
2
100
0
94
51
0
48
0
1.00
1050111--1050591
173
2.8
173
80
8
479
34
14
22
27
1.94
1050018--1050652
165
3.8
163
77
10
631
34
14
23
27
1.94
1051223--1051266
16
2.8
16
96
0
79
22
47
20
9
1.78
1052491--1052544
16
3.4
16
89
0
81
9
22
48
20
1.78
1055636--1055704
2
35.0
2
91
2
113
1
1
47
49
1.19
1059372--1059419
22
2.4
19
75
24
53
33
2
14
50
1.55
1065457--1065509
19
2.8
19
86
11
81
26
22
26
24
2.00
1066053--1066085
5
6.6
5
100
0
66
36
0
21
42
1.53
1077088--1077126
2
19.5
2
100
0
78
51
0
48
0
1.00
1081565--1081647
20
4.2
20
100
0
166
36
25
9
28
1.88
1082930--1082967
1
38.0
1
100
0
76
0
0
0
100
0.00
1091126--1091211
44
2.0
44
92
0
145
27
8
15
48
1.73
1100045--1100165
21
5.8
21
75
6
111
38
13
19
29
1.89
1100045--1100139
42
2.3
42
85
3
129
34
13
20
31
1.91
1101008--1101113
11
9.6
11
84
0
131
46
27
16
9
1.78
1101017--1101113
22
4.4
22
97
0
185
45
27
17
9
1.79
1102136--1102512
173
2.2
173
82
6
453
25
15
23
35
1.94
1104807--1104851
23
2.0
23
91
8
74
71
4
4
20
1.21
1107819--1108386
63
9.0
63
99
0
1100
36
20
22
20
1.96
1108702--1109516
38
21.4
38
96
0
1477
33
27
20
18
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1109886--1109934
24
2.0
24
81
14
57
51
0
10
38
1.36
1111564--1111596
17
2.1
16
88
11
50
36
15
15
33
1.88
1112278--1112411
35
3.8
35
86
2
162
17
14
37
30
1.90
1112902--1112969
35
1.9
36
82
8
86
14
13
42
29
1.84
1112935--1113104
93
1.8
93
82
8
220
12
11
43
31
1.79
1116626--1116672
22
2.1
22
84
0
58
44
23
23
8
1.80
1117215--1117252
18
2.1
18
95
0
67
23
21
13
42
1.88
1119940--1120091
79
1.9
80
90
1
243
22
7
19
51
1.71
1123483--1123521
2
19.5
2
94
0
69
0
48
0
51
1.00
1123835--1123876
2
21.0
2
100
0
84
50
50
0
0
1.00
1127174--1127224
20
2.5
20
78
6
50
49
25
7
17
1.74
1129714--1129770
30
1.9
30
96
0
105
24
22
24
28
2.00
1138395--1138434
17
2.5
16
88
8
55
35
17
27
20
1.95
1150519--1150595
21
3.7
21
84
5
75
24
10
23
41
1.85
1150545--1150598
21
2.6
21
90
0
81
25
11
24
38
1.88
1150622--1150650
15
1.9
15
100
0
58
20
10
27
41
1.85
1150814--1150890
21
3.7
21
94
0
127
28
12
20
37
1.90
1158339--1158388
2
25.0
2
95
0
91
52
0
48
0
1.00
1158905--1158944
11
3.7
11
86
3
55
35
10
30
25
1.88
1159015--1159064
11
4.6
11
85
2
66
28
28
10
34
1.89
1159057--1159117
22
2.8
22
78
9
70
18
24
14
42
1.88
1159448--1159501
2
27.0
2
100
0
108
0
50
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1159715--1159937
112
2.0
112
98
0
428
32
18
18
29
1.95
1160952--1161005
11
4.9
11
90
0
90
31
9
33
25
1.88
1161037--1161065
11
2.6
11
100
0
58
31
10
31
27
1.90
1161131--1161162
11
2.9
11
95
0
55
34
9
28
28
1.88
1161168--1161206
11
3.6
11
82
6
53
30
23
7
38
1.83
1161272--1161312
22
2.0
21
85
9
57
51
4
17
26
1.65
1165763--1165814
25
2.1
25
92
0
86
34
25
19
21
1.96
1181965--1182340
157
2.3
157
79
8
366
31
16
13
38
1.87
1184764--1185144
38
10.1
38
92
0
593
32
27
18
20
1.96
1185468--1185801
166
2.0
167
85
0
445
39
16
16
27
1.89
1187648--1187690
11
3.7
11
81
6
50
9
13
27
48
1.73
1187891--1187934
11
4.0
11
81
0
61
54
27
9
9
1.62
1188489--1188571
42
2.0
42
95
0
148
24
18
16
40
1.90
1189133--1189246
42
2.7
42
87
0
156
23
35
19
21
1.95
1194335--1194400
8
8.4
8
86
3
80
0
37
25
36
1.57
1194336--1194397
4
15.8
4
83
3
72
0
40
25
33
1.56
1194336--1194397
12
5.2
12
90
1
90
0
40
25
33
1.56
1195734--1196106
186
2.0
186
100
0
746
27
19
14
38
1.90
1196261--1197082
166
5.0
165
79
7
786
32
14
22
29
1.94
1196260--1196947
331
2.1
318
83
7
832
32
14
22
30
1.94
1197855--1197897
2
21.5
2
100
0
86
0
0
48
51
1.00
1197710--1198014
163
1.8
165
92
3
515
28
12
22
36
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1198371--1199007
16
37.6
16
78
9
506
32
17
16
32
1.93
1198557--1198596
21
1.9
21
89
0
62
40
20
10
30
1.85
1198509--1198644
69
2.0
69
82
2
166
37
19
14
28
1.91
1198787--1198954
21
8.7
21
82
12
186
32
19
15
32
1.93
1203343--1203447
20
5.3
20
75
11
101
41
19
8
30
1.81
1203335--1203685
41
8.5
41
80
12
366
41
18
8
31
1.80
1203425--1203485
17
3.4
17
66
16
50
42
13
8
36
1.74
1203501--1203531
16
1.9
16
93
0
53
38
29
3
29
1.73
1203480--1203609
21
6.5
21
70
13
103
41
19
8
30
1.81
1203579--1203648
31
2.3
31
87
2
106
40
21
8
30
1.83
1203610--1203758
21
6.8
21
70
15
95
43
18
8
29
1.79
1203480--1203735
93
2.7
93
85
7
306
42
18
8
30
1.80
1203668--1203725
28
2.1
28
93
0
98
48
15
8
27
1.74
1204873--1204953
4
20.2
4
81
0
63
39
28
7
24
1.82
1204898--1204958
16
3.8
16
88
0
95
37
26
11
24
1.89
1209493--1209579
21
4.1
21
83
0
111
11
2
35
50
1.51
1209571--1210274
18
37.8
18
71
13
261
8
10
28
53
1.63
1209603--1209681
24
3.5
24
73
19
80
7
6
31
54
1.54
1209610--1209920
39
8.1
39
78
8
278
10
6
29
53
1.60
1209673--1211601
18
105.5
17
75
11
408
4
15
26
53
1.59
1209667--1209920
114
2.2
114
85
0
355
11
6
29
53
1.61
1209924--1211702
18
98.3
18
78
7
1359
3
16
26
54
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1211557--1211646
45
2.0
45
91
4
146
2
17
27
52
1.57
1211575--1211628
27
2.0
27
92
7
92
0
14
29
55
1.40
1211521--1211682
81
2.0
81
84
2
209
1
18
27
52
1.53
1211518--1211700
99
1.8
99
82
6
237
1
18
27
52
1.54
1211720--1211754
18
1.9
18
94
0
61
0
20
25
54
1.45
1211986--1212572
18
32.8
18
68
10
274
10
12
24
52
1.69
1211944--1212066
21
6.3
19
72
16
60
4
11
26
58
1.50
1212025--1212128
33
3.1
33
69
17
95
5
11
24
58
1.54
1212025--1212168
69
2.1
68
81
10
159
6
11
25
56
1.57
1212133--1212549
72
5.8
72
86
2
536
11
12
24
50
1.74

Tables:   1   2   3   4   5