oyster.v9_M.fa.s26.2.7.7.80.10.50.500.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold601
Parameters: 2 7 7 80 10 50 500
Length:  1259944

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 521 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1212130--1212549	108	3.9	108	84	4	517	11	12	25	50	1.74
1212670--1212752	18	4.4	18	80	4	67	7	7	33	51	1.57
1214681--1214714	14	2.4	14	95	0	59	35	32	11	20	1.89
1218358--1218608	19	13.3	19	95	2	461	52	9	16	20	1.72
1221135--1221201	22	3.0	22	97	0	125	34	13	14	37	1.86
1221906--1221967	25	2.4	25	94	2	106	33	16	12	37	1.87
1222014--1222271	42	6.1	42	96	1	462	31	14	23	30	1.95
1222197--1222263	21	3.2	21	62	29	52	31	14	22	31	1.94
1222250--1222338	21	4.2	21	100	0	178	28	14	28	29	1.95
1222014--1222313	84	3.5	83	91	5	437	30	14	24	30	1.95
1222014--1222313	126	2.4	125	90	7	446	30	14	24	30	1.95
1222968--1223407	20	22.0	20	93	0	745	24	28	14	31	1.95
1224346--1224471	44	2.9	43	81	7	130	38	19	14	26	1.90
1224500--1225173	31	20.5	31	74	14	444	29	23	21	25	1.99
1224473--1224612	72	1.9	72	85	2	192	27	25	20	27	1.99
1224495--1224849	103	3.4	103	93	0	584	28	23	21	26	1.99
1224495--1225040	103	5.5	103	87	3	580	29	23	21	25	1.99
1225144--1225198	25	2.2	25	86	0	74	29	21	18	30	1.97
1226254--1226306	15	3.6	14	78	9	61	39	9	5	45	1.60
1226297--1226531	40	5.9	40	88	0	344	33	14	20	31	1.92
1226297--1226531	80	2.9	80	94	0	398	33	14	20	31	1.92
1226886--1226957	2	36.0	2	100	0	144	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1227077--1227306	21	11.0	21	87	1	338	36	20	5	36	1.76
1227077--1227439	42	8.3	42	82	11	372	36	20	7	34	1.81
1227077--1227439	63	5.9	63	78	9	390	36	20	7	34	1.81
1227342--1227439	21	4.7	21	92	0	160	39	18	5	36	1.73
1227589--1227664	4	19.0	4	100	0	152	50	0	25	25	1.50
1234727--1234781	2	27.5	2	96	0	101	52	0	47	0	1.00
1237275--1237436	88	1.9	87	83	5	213	40	14	14	30	1.87
1243593--1243634	2	21.0	2	100	0	84	0	50	0	50	1.00
1243693--1243724	2	16.0	2	100	0	64	0	50	0	50	1.00
1243602--1243782	90	2.0	89	97	2	353	22	27	9	40	1.85
1245941--1246107	89	1.9	89	94	2	300	29	28	16	25	1.96
1246160--1246184	10	2.5	10	100	0	50	40	12	12	36	1.79
1249597--1249676	42	1.9	42	94	0	142	18	20	30	31	1.96
1252905--1253003	13	7.4	13	71	22	80	30	16	16	37	1.90
1252891--1253003	27	4.2	27	96	0	208	30	15	15	38	1.88
1254301--1255206	103	8.8	103	98	0	1740	23	22	28	25	1.99
1257496--1257712	37	5.7	37	82	10	251	25	12	9	52	1.69
1257496--1257709	118	1.8	116	88	2	329	26	13	9	51	1.70
1259889--1259925	18	2.0	18	89	5	56	32	32	29	5	1.80

Tables:   1   2   3   4   5

The End!