Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Sequence: scaffold301
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1229110
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.30
Warning! 128216 characters in sequence are not A, C, G, or T
File 3 of 4
Found at i:376430 original size:2 final size:2
Alignment explanation
Indices: 376423--376448 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
376413 TTTTTAAGCG
376423 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
376449 GTACAGATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:388412 original size:2 final size:2
Alignment explanation
Indices: 388407--388475 Score: 86
Period size: 2 Copynumber: 35.0 Consensus size: 2
388397 TGTGTGTGTT
* * * *
388407 TA TA TA TA TA TA TA TA TA TA TA TA -A TA TT TG NA TA TA TA TT
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
388448 TA TA TA TA TT TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
388476 ATTAACTTAA
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
1 1 0.02
2 56 0.98
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.52
Consensus pattern (2 bp):
TA
Found at i:402521 original size:2 final size:2
Alignment explanation
Indices: 402514--402559 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
402504 AGTATCACTC
402514 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
402556 TG TG
1 TG TG
402560 GTTGTTTATG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:406402 original size:2 final size:2
Alignment explanation
Indices: 406395--406451 Score: 114
Period size: 2 Copynumber: 28.5 Consensus size: 2
406385 TACTACAAAA
406395 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
406437 TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC T
406452 AAAACAATAA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 55 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:416812 original size:34 final size:33
Alignment explanation
Indices: 416765--416836 Score: 108
Period size: 34 Copynumber: 2.2 Consensus size: 33
416755 TTGGATATTC
*
416765 TTTTGATATTCTTTGAATGTTATGAGGTCATAA
1 TTTTGATATTCTTTGAATATTATGAGGTCATAA
* *
416798 TTTTGATCATTCTTTGAGTATTATGAGGTGATAA
1 TTTTGAT-ATTCTTTGAATATTATGAGGTCATAA
416832 TTTTG
1 TTTTG
416837 GTCAGAGCAT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
33 7 0.20
34 28 0.80
ACGTcount: A:0.25, C:0.06, G:0.19, T:0.50
Consensus pattern (33 bp):
TTTTGATATTCTTTGAATATTATGAGGTCATAA
Found at i:417967 original size:2 final size:2
Alignment explanation
Indices: 417960--418008 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
417950 AATATAACAC
417960 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
418002 CT CT CT C
1 CT CT CT C
418009 GTGGCTGTGA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:419404 original size:2 final size:2
Alignment explanation
Indices: 419397--419443 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
419387 TCAGAACTGT
419397 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
419439 TC TC T
1 TC TC T
419444 AATCTGTAAC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:425488 original size:2 final size:2
Alignment explanation
Indices: 425481--425532 Score: 95
Period size: 2 Copynumber: 26.0 Consensus size: 2
425471 AAAATATTAA
*
425481 CT CT CT CT TT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
425523 CT CT CT CT CT
1 CT CT CT CT CT
425533 AATGTCGAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
CT
Found at i:427406 original size:4 final size:4
Alignment explanation
Indices: 427392--427423 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
427382 GATCACATTT
*
427392 TGTC CGTC TGTC TGTC TGTC TGTC TGTC TGTC
1 TGTC TGTC TGTC TGTC TGTC TGTC TGTC TGTC
427424 CGTTTGTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.00, C:0.28, G:0.25, T:0.47
Consensus pattern (4 bp):
TGTC
Found at i:443622 original size:2 final size:2
Alignment explanation
Indices: 443615--443684 Score: 140
Period size: 2 Copynumber: 35.0 Consensus size: 2
443605 TTCTGTGTAC
443615 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
443657 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
443685 GTTTTCCCTT
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 68 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:447800 original size:17 final size:17
Alignment explanation
Indices: 447778--447810 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
447768 ATGAAATGCT
*
447778 AAAACAAACAAACAAAC
1 AAAACAAAAAAACAAAC
447795 AAAACAAAAAAACAAA
1 AAAACAAAAAAACAAA
447811 TTACTGTACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.82, C:0.18, G:0.00, T:0.00
Consensus pattern (17 bp):
AAAACAAAAAAACAAAC
Found at i:449687 original size:84 final size:83
Alignment explanation
Indices: 449546--449713 Score: 327
Period size: 84 Copynumber: 2.0 Consensus size: 83
449536 ATCAGCCGAT
449546 TTGTCAAAATCGCCCCAAAGACCAGTTGACCCTCGATCGTCAGTCGGCCGACATTTAAGAAAATC
1 TTGTCAAAATCGCCCCAAAGACCAGTTGACCCTCGATCGTCAGTCGGCCGACATTTAAGAAAATC
449611 CAAATGCCGAAATGTCGA
66 CAAATGCCGAAATGTCGA
449629 NTTGTCAAAATCGCCCCAAAGACCAGTTGACCCTCGATCGTCAGTCGGCCGACATTTAAGAAAAT
1 -TTGTCAAAATCGCCCCAAAGACCAGTTGACCCTCGATCGTCAGTCGGCCGACATTTAAGAAAAT
449694 CCAAATGCCGAAATGTCGA
65 CCAAATGCCGAAATGTCGA
449713 T
1 T
449714 CGACCGAGCG
Statistics
Matches: 84, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
83 1 0.01
84 83 0.99
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.21
Consensus pattern (83 bp):
TTGTCAAAATCGCCCCAAAGACCAGTTGACCCTCGATCGTCAGTCGGCCGACATTTAAGAAAATC
CAAATGCCGAAATGTCGA
Found at i:450955 original size:2 final size:2
Alignment explanation
Indices: 450948--450993 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
450938 GAAATAAACA
450948 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
450990 CT CT
1 CT CT
450994 GATATATGTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:454612 original size:164 final size:163
Alignment explanation
Indices: 454312--454614 Score: 396
Period size: 164 Copynumber: 1.9 Consensus size: 163
454302 TGGGGGGGGG
* *
454312 GGGGGGTCAAAATTTTACATAGGAATATATAGAGTAAATCTTTAAAAATCTTCTTCTCAAAAACC
1 GGGGGGTCAAAATTTTACATAGGAATAAATAGAGTAAATCTTTAAAAATCTTCATCTCAAAAACC
* ** * *
454377 AATCAGCCAGCAAAGCTGAAACTTATGTGCAAGCATCCTAAGGTAGTGTAGATTCAAAGTTGTGA
66 AATCAGCCAGAAAAGCAAAAACTTATGTGCAAGCATCCTAAGGTAGTGTAAATTCAAAGTTATGA
454442 AAATCATGACTCGGGGTAGGGTGGGGCCACACT
131 AAATCATGACTCGGGGTAGGGTGGGGCCACACT
* * *
454475 GGGGGGTCGAATTTTTACATAGGAATAAATAGAG-AAATGTCTTTAAAAATCTT-ATCATCAGAA
1 GGGGGGTCAAAATTTTACATAGGAATAAATAGAGTAAA--TCTTTAAAAATCTTCATC-TCAAAA
** * * *
454538 ACCAATTGGCCAGAAAAGCAAAAACTTGTGTGGAAGCATCCTCAGGTAGTGTAAATTC-AAGTGT
63 ACCAATCAGCCAGAAAAGCAAAAACTTATGTGCAAGCATCCTAAGGTAGTGTAAATTCAAAGT-T
**
454602 ATTCAAATCATGA
127 ATGAAAATCATGA
454615 TCCCTGGGGG
Statistics
Matches: 119, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
162 3 0.03
163 37 0.31
164 79 0.66
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (163 bp):
GGGGGGTCAAAATTTTACATAGGAATAAATAGAGTAAATCTTTAAAAATCTTCATCTCAAAAACC
AATCAGCCAGAAAAGCAAAAACTTATGTGCAAGCATCCTAAGGTAGTGTAAATTCAAAGTTATGA
AAATCATGACTCGGGGTAGGGTGGGGCCACACT
Found at i:456086 original size:76 final size:77
Alignment explanation
Indices: 455902--456125 Score: 317
Period size: 78 Copynumber: 2.9 Consensus size: 77
455892 CAGTATTTTT
* *
455902 ACCTCTTTTGCCATTATATCTTAGCTTGCAAATTTTGACAGCATATTTTTCAGGTTAGCTTTACA
1 ACCTCTTTTGCCATTAAATCTTAGCTTGCAAATTTTGACTGCATATTTTT-AGGTTAGCTTTACA
**
455967 GCCCGTATACTTC
65 GCCCACATACTTC
* *
455980 ACCTCTTTTGCCATTAAATCTTAACTTGCAAATTTTGACTGCATATTTTTAGGTTAGTTTTACAG
1 ACCTCTTTTGCCATTAAATCTTAGCTTGCAAATTTTGACTGCATATTTTTAGGTTAGCTTTACAG
*
456045 CTCACATACTTC
66 CCCACATACTTC
* * *
456057 -CTTTTTTTGCCATTAAATCTTAGCTTGCAAATTTTGA-TAGCATATTTTATAGGCTAGCTTTAC
1 ACCTCTTTTGCCATTAAATCTTAGCTTGCAAATTTTGACT-GCATATTTT-TAGGTTAGCTTTAC
456120 AGCCCA
64 AGCCCA
456126 TGTATTTCTC
Statistics
Matches: 131, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
75 1 0.01
76 43 0.33
77 40 0.31
78 47 0.36
ACGTcount: A:0.25, C:0.21, G:0.12, T:0.42
Consensus pattern (77 bp):
ACCTCTTTTGCCATTAAATCTTAGCTTGCAAATTTTGACTGCATATTTTTAGGTTAGCTTTACAG
CCCACATACTTC
Found at i:457980 original size:14 final size:15
Alignment explanation
Indices: 457961--458006 Score: 58
Period size: 16 Copynumber: 3.0 Consensus size: 15
457951 ATATAATATG
*
457961 ATAAAGGTG-GTCTC
1 ATAAAGGTGAGCCTC
457975 ATAAAGGTGATGCCTC
1 ATAAAGGTGA-GCCTC
457991 ATAAAGGTGATGCCTC
1 ATAAAGGTGA-GCCTC
458007 GTCTCTGTGA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
14 9 0.31
16 20 0.69
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (15 bp):
ATAAAGGTGAGCCTC
Found at i:457993 original size:16 final size:16
Alignment explanation
Indices: 457972--458006 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
457962 TAAAGGTGGT
457972 CTCATAAAGGTGATGC
1 CTCATAAAGGTGATGC
457988 CTCATAAAGGTGATGC
1 CTCATAAAGGTGATGC
458004 CTC
1 CTC
458007 GTCTCTGTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (16 bp):
CTCATAAAGGTGATGC
Found at i:458445 original size:12 final size:12
Alignment explanation
Indices: 458428--458452 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
458418 TTGATAATAG
458428 ATATTCACATTC
1 ATATTCACATTC
458440 ATATTCACATTC
1 ATATTCACATTC
458452 A
1 A
458453 CATTGAAGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.24, G:0.00, T:0.40
Consensus pattern (12 bp):
ATATTCACATTC
Found at i:458886 original size:163 final size:159
Alignment explanation
Indices: 458526--458914 Score: 480
Period size: 163 Copynumber: 2.4 Consensus size: 159
458516 CAGTTTCCGT
* * *
458526 TCATTTTCTTCGCAGAGGATGAACATTTTGAAATGAAATTTGGTAAACAGGTTA-ATCATGATAA
1 TCATTTTCTTCGCAGAGGATGAACATATTGAAATGAAATTT-GTATACAGCTTATATCATGATAA
** * *
458590 TATCTAGGTCAAGTTTGATATTGGGTGTGAAGAGCTATTTTCACAAAGTTATGTCCCGTGGACAT
65 TATCTAGGTCAAGTTTGATATTGGGTACGAAGAGCAATTTTCACAAAGTTATGCCCCGTGGACAT
* * *
458655 AGAAAAATTCCAGTTATTTGTAGTTTCCAG
130 AGAAAAATTCCAATTATTTGCAGTTTACAG
* * * * *
458685 TTATTTCCTTCGCAAAGGATAAACATAATGAAATGAAATTAT-TATACAGCTATAATATCATGAT
1 TCATTTTCTTCGCAGAGGATGAACATATTGAAATGAAATT-TGTATACAGCT-T-ATATCATGAT
* * *
458749 AATATCTAGGTCAAGTTTGATATTGGGTACGATCGAGCAATTTTCGACATAGTTATGCCCCTTGG
63 AATATCTAGGTCAAGTTTGATATTGGGTACGA-AGAGCAATTTTC-ACAAAGTTATGCCCCGTGG
* * *
458814 ACGTAGAAAAATTCTAATTATTTGCAG-TTACTG
126 ACATAGAAAAATTCCAATTATTTGCAGTTTACAG
*
458847 CTCATTTTCTTCACAGAGGATGAACATATTGAAATGAAATTTGATATACAGCTT-TATCATGATA
1 -TCATTTTCTTCGCAGAGGATGAACATATTGAAATGAAATTTG-TATACAGCTTATATCATGATA
458911 ATAT
64 ATAT
458915 GTATATATTG
Statistics
Matches: 194, Mismatches: 27, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
158 7 0.04
159 35 0.18
160 2 0.01
161 52 0.27
162 15 0.08
163 74 0.38
164 9 0.05
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.35
Consensus pattern (159 bp):
TCATTTTCTTCGCAGAGGATGAACATATTGAAATGAAATTTGTATACAGCTTATATCATGATAAT
ATCTAGGTCAAGTTTGATATTGGGTACGAAGAGCAATTTTCACAAAGTTATGCCCCGTGGACATA
GAAAAATTCCAATTATTTGCAGTTTACAG
Found at i:459446 original size:8 final size:8
Alignment explanation
Indices: 459433--459462 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
459423 TTTGTCTGTC
459433 GTCCGTCT
1 GTCCGTCT
459441 GTCCGTCT
1 GTCCGTCT
*
459449 GTCTGTCT
1 GTCCGTCT
459457 GTCCGT
1 GTCCGT
459463 AAACTTTTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.00, C:0.33, G:0.27, T:0.40
Consensus pattern (8 bp):
GTCCGTCT
Found at i:460337 original size:165 final size:165
Alignment explanation
Indices: 459657--460529 Score: 1407
Period size: 165 Copynumber: 5.2 Consensus size: 165
459647 AGAACCAGAA
* *
459657 AGCCAGGAAAGCTGAAACTTGTGTGGAAGCATCCTCAGGTAGTGTAGATTCAAAGTTGTGAAATT
1 AGCCAGGAAAGCTGAAACTAGTGTGGAAGCATCCTCAGGTAGTGTAGATTCAAAGTTGTGAAAAT
* *
459722 CATGACCCCCGGGGGTAGGGTGGGGCCACAATGGGGGGGGGGTCAAAGTTTTACATAGGAATATA
66 CATGACCCCTGGGGGTAGGGTGGGG-CACAAT----GGGGGGTCGAAGTTTTACATAGGAATATA
*
459787 TAGAGTAAATCTTTAAAAATCTTCCTCTCAGAAACTAATC
126 TAGAGTAAATCTTTAAAAATCTTCTTCTCAGAAACTAATC
* *
459827 AGCCAGGAAAGCTGAAACTTA-TGTGGAAGCATCCTCAAGTAGTGCAGATTCAAAGTTGTGAAAA
1 AGCCAGGAAAGCTGAAAC-TAGTGTGGAAGCATCCTCAGGTAGTGTAGATTCAAAGTTGTGAAAA
* * *
459891 TCATGACCCCTGGGGGTAGGGTGAGGCCACATTGGGGGGT-GTTAAAGTTTTACATTGGAATATA
65 TCATGACCCCTGGGGGTAGGGTG-GGGCACAATGGGGGGTCG---AAGTTTTACATAGGAATATA
*
459955 T--AGTAAATCTTTAAAAATCTTCTACTCAGAAACTAATC
126 TAGAGTAAATCTTTAAAAATCTTCTTCTCAGAAACTAATC
*
459993 AGCCAGGAAAGCTGAAACTAGCGTGGAAGCATCCTCAGGTAGTGTAGATTCAAAGTTGTGAAAAT
1 AGCCAGGAAAGCTGAAACTAGTGTGGAAGCATCCTCAGGTAGTGTAGATTCAAAGTTGTGAAAAT
*
460058 CATGACCCCCT-GGGGTTGGGTGGGGCCACAATGGGGTGGTCGAAGTTTTACATAGGAATATATA
66 CATGA-CCCCTGGGGGTAGGGTGGGG-CACAATGGGG-GGTCGAAGTTTTACATAGGAATATATA
460122 GAGTAAATCTTT-AAAATCTTCTTCTCAGAAACTAATC
128 GAGTAAATCTTTAAAAATCTTCTTCTCAGAAACTAATC
*
460159 AGCCAGGAAAGCTGAAACTAGCGTGGAAGCATCCTCAGGTAGTGTAGATTCAAAGTTGTGAAAAT
1 AGCCAGGAAAGCTGAAACTAGTGTGGAAGCATCCTCAGGTAGTGTAGATTCAAAGTTGTGAAAAT
*
460224 CATGATCCCTGGGGGTAGGGTGGGGCACAATGGGGGGTCGAAGTTTTACATAGGAATATATAGAG
66 CATGACCCCTGGGGGTAGGGTGGGGCACAATGGGGGGTCGAAGTTTTACATAGGAATATATAGAG
460289 TAAATCTTTAAAAATCTTCTTCTCAGAAACTAATC
131 TAAATCTTTAAAAATCTTCTTCTCAGAAACTAATC
* *
460324 AGCCAGGAAAGCTGAAACTTGTGTGGAAGTATCCTCAGGTAGTGTAGATTCAAAGTTGTGAAAAT
1 AGCCAGGAAAGCTGAAACTAGTGTGGAAGCATCCTCAGGTAGTGTAGATTCAAAGTTGTGAAAAT
*
460389 CATGATCCCTGGGGGTAGGGTGGGGCACAATGGGGGGTCGAAGTTTTACATAGGAATATATAGAG
66 CATGACCCCTGGGGGTAGGGTGGGGCACAATGGGGGGTCGAAGTTTTACATAGGAATATATAGAG
460454 TAAATCTTTAAAAATCTTCTTCTCAGAAACTAATC
131 TAAATCTTTAAAAATCTTCTTCTCAGAAACTAATC
* *
460489 AGCCAGGAAAGCTGAAACTTGTGTGGAAGTATCCTCAGGTA
1 AGCCAGGAAAGCTGAAACTAGTGTGGAAGCATCCTCAGGTA
460530 CTGTGGTTTC
Statistics
Matches: 665, Mismatches: 24, Indels: 33
0.92 0.03 0.05
Matches are distributed among these distances:
164 39 0.06
165 266 0.40
166 232 0.35
167 19 0.03
168 21 0.03
170 85 0.13
171 3 0.00
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (165 bp):
AGCCAGGAAAGCTGAAACTAGTGTGGAAGCATCCTCAGGTAGTGTAGATTCAAAGTTGTGAAAAT
CATGACCCCTGGGGGTAGGGTGGGGCACAATGGGGGGTCGAAGTTTTACATAGGAATATATAGAG
TAAATCTTTAAAAATCTTCTTCTCAGAAACTAATC
Found at i:463498 original size:29 final size:30
Alignment explanation
Indices: 463465--463528 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 30
463455 ACATTTGACA
* *
463465 TTTCTGAT-GAAACGAATTGCCAAAAAAAT
1 TTTCTGATCAAAACGAATCGCCAAAAAAAT
** *
463494 TTTCTTTTCAAAATGAATCGCCAAAAAAAT
1 TTTCTGATCAAAACGAATCGCCAAAAAAAT
463524 TTTCT
1 TTTCT
463529 TTTCAAAATT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 6 0.21
30 23 0.79
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.34
Consensus pattern (30 bp):
TTTCTGATCAAAACGAATCGCCAAAAAAAT
Found at i:463517 original size:30 final size:30
Alignment explanation
Indices: 463478--463537 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
463468 CTGATGAAAC
*
463478 GAATTGCCAAAAAAATTTTCTTTTCAAAAT
1 GAATCGCCAAAAAAATTTTCTTTTCAAAAT
463508 GAATCGCCAAAAAAATTTTCTTTTCAAAAT
1 GAATCGCCAAAAAAATTTTCTTTTCAAAAT
463538 TGTTCTTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.43, C:0.15, G:0.07, T:0.35
Consensus pattern (30 bp):
GAATCGCCAAAAAAATTTTCTTTTCAAAAT
Found at i:465742 original size:25 final size:25
Alignment explanation
Indices: 465710--465760 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
465700 AATCTATATA
465710 TTATATGTGAAGTATT-AGAATATCT
1 TTATATGTGAAGTATTAAG-ATATCT
*
465735 TTATATGTGTAGTATTAAGATATCT
1 TTATATGTGAAGTATTAAGATATCT
465760 T
1 T
465761 GTGGTAATGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 22 0.92
26 2 0.08
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (25 bp):
TTATATGTGAAGTATTAAGATATCT
Found at i:468445 original size:187 final size:187
Alignment explanation
Indices: 468130--468504 Score: 732
Period size: 187 Copynumber: 2.0 Consensus size: 187
468120 TATATCCATA
468130 ATGTTTTCTTCTTAAATTGTGAAATTCAATGATCATGGGGCAGGGGTTCAGACTTTTTATTTGAG
1 ATGTTTTCTTCTTAAATTGTGAAATTCAATGATCATGGGGCAGGGGTTCAGACTTTTTATTTGAG
468195 GAGGAGGGGACAAAAATGGTCATATAGGGAACATATATTTTTAAGGTCACTTATGTATTGCTGTT
66 GAGGAGGGGACAAAAATGGTCATATAGGGAACATATATTTTTAAGGTCACTTATGTATTGCTGTT
468260 GATCTATATGGTACTCAGGTGACCACAAGACCAGCTATGACTCTCTTGTTTCTTTTC
131 GATCTATATGGTACTCAGGTGACCACAAGACCAGCTATGACTCTCTTGTTTCTTTTC
*
468317 ATGTTTTCTTCTTAAATTGTGAAATTCAGTGATCATGGGGCAGGGGTTCAGACTTTTTATTTGAG
1 ATGTTTTCTTCTTAAATTGTGAAATTCAATGATCATGGGGCAGGGGTTCAGACTTTTTATTTGAG
468382 GAGGAGGGGACAAAAATGGTCATATAGGGAACATATATTTTTAAGGTCACTTATGTATTGCTGTT
66 GAGGAGGGGACAAAAATGGTCATATAGGGAACATATATTTTTAAGGTCACTTATGTATTGCTGTT
*
468447 GATCTATATGGTACTCGGGTGACCACAAGACCAGCTATGACTCTCTTGTTTCTTTTC
131 GATCTATATGGTACTCAGGTGACCACAAGACCAGCTATGACTCTCTTGTTTCTTTTC
468504 A
1 A
468505 GCTGAGTGGA
Statistics
Matches: 186, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
187 186 1.00
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.36
Consensus pattern (187 bp):
ATGTTTTCTTCTTAAATTGTGAAATTCAATGATCATGGGGCAGGGGTTCAGACTTTTTATTTGAG
GAGGAGGGGACAAAAATGGTCATATAGGGAACATATATTTTTAAGGTCACTTATGTATTGCTGTT
GATCTATATGGTACTCAGGTGACCACAAGACCAGCTATGACTCTCTTGTTTCTTTTC
Found at i:472063 original size:29 final size:29
Alignment explanation
Indices: 472031--472118 Score: 77
Period size: 32 Copynumber: 2.9 Consensus size: 29
472021 TGTGATGTAC
*
472031 AGATGTACAGCGTACATAGAATGTCAGCT
1 AGATGTACAGCGTACATAGAATGTCAGCA
**
472060 AGATGTTCAACATAGTACATAGAATGTCAGCA
1 AGATG-T--ACAGCGTACATAGAATGTCAGCA
* * * * *
472092 AGTTTTACTGCATACATAGAATTTCAG
1 AGATGTACAGCGTACATAGAATGTCAG
472119 ATATATAGCG
Statistics
Matches: 46, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
29 21 0.46
30 1 0.02
31 1 0.02
32 23 0.50
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.28
Consensus pattern (29 bp):
AGATGTACAGCGTACATAGAATGTCAGCA
Found at i:475587 original size:103 final size:103
Alignment explanation
Indices: 475458--475665 Score: 380
Period size: 103 Copynumber: 2.0 Consensus size: 103
475448 AATTGTATAC
*
475458 CATTTGCATGCAGTTGCATTTGCTTCATTTGCAAAATTAAGAAAATGCGTATAACATGCATGCTG
1 CATTCGCATGCAGTTGCATTTGCTTCATTTGCAAAATTAAGAAAATGCGTATAACATGCATGCTG
*
475523 AAAATGTTTAGCTGCATAAATTTTTGTCCTGTTTTTAG
66 AAAATGTTTAGCTGCATAAATTTTTGTCCTATTTTTAG
*
475561 CATTCGCATGCAGTTGCATTTGCTTCATTTGCAAAATTAAGAAAATGGGTATAACATGCATGCTG
1 CATTCGCATGCAGTTGCATTTGCTTCATTTGCAAAATTAAGAAAATGCGTATAACATGCATGCTG
*
475626 AAAATGTTTAGCTGCATAAATTTTTGTCTTATTTTTAG
66 AAAATGTTTAGCTGCATAAATTTTTGTCCTATTTTTAG
475664 CA
1 CA
475666 GAAAACTAGA
Statistics
Matches: 101, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
103 101 1.00
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.38
Consensus pattern (103 bp):
CATTCGCATGCAGTTGCATTTGCTTCATTTGCAAAATTAAGAAAATGCGTATAACATGCATGCTG
AAAATGTTTAGCTGCATAAATTTTTGTCCTATTTTTAG
Found at i:476953 original size:184 final size:184
Alignment explanation
Indices: 476643--476986 Score: 473
Period size: 184 Copynumber: 1.9 Consensus size: 184
476633 GAACTTCGGA
**
476643 ATTTTTTGGCAAAATATTGCATATAGGGTACCCCAATTGTAAGGATAAATCCTCCAATGGTTTTC
1 ATTTTTTGGCAAAATATTGCATATAGGGTACCCCAATTGTAAGGATAAATCCTCCAACAGTTTTC
* * *
476708 AAGATAGTAAGTTGTTCTTTTGCAGATCAATTATACATATATCAGAGGTATGCATATATTGCCAG
66 AAGACAGGAAGTTGTTCTTTTGCAGATCAATTAAACATATATCAGAGGTATGCATATATTGCCAG
*
476773 AATTTTGATTTCTTATTATTTATGAAAAAAATACTAGCCGTTAATCTTAATGTC
131 AATTTTGATTTCTGATTATTTATGAAAAAAATACTAGCCGTTAATCTTAATGTC
* * * *
476827 ATTTTTTGGCAAATTATTGCATTTAGGGTACCCCTATTGTACA-GA-AAACTCCTCCTACAGTTT
1 ATTTTTTGGCAAAATATTGCATATAGGGTACCCCAATTGTA-AGGATAAA-TCCTCCAACAGTTT
* *
476890 TCAAGACAGGAAGTTGTTCTTTTTCAGATCAATTAAACATATATATCATAGGTGA-G-A-ATATT
64 TCAAGACAGGAAGTTGTTCTTTTGCAGATCAATTAAAC--ATATATCAGAGGT-ATGCATATATT
* * *
476952 GCTAGGATTTTGATTTCTGGTTATTTATGAAAAAA
126 GCCAGAATTTTGATTTCTGATTATTTATGAAAAAA
476987 TAACCATGCA
Statistics
Matches: 140, Mismatches: 15, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
183 3 0.02
184 121 0.86
185 2 0.01
186 13 0.09
187 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.38
Consensus pattern (184 bp):
ATTTTTTGGCAAAATATTGCATATAGGGTACCCCAATTGTAAGGATAAATCCTCCAACAGTTTTC
AAGACAGGAAGTTGTTCTTTTGCAGATCAATTAAACATATATCAGAGGTATGCATATATTGCCAG
AATTTTGATTTCTGATTATTTATGAAAAAAATACTAGCCGTTAATCTTAATGTC
Found at i:477468 original size:11 final size:11
Alignment explanation
Indices: 477434--477472 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
477424 AGCTATGCCA
*
477434 TTCAGTCACAT
1 TTCAGTCACCT
* *
477445 TTTAGTTACCT
1 TTCAGTCACCT
477456 TTCAGTCACCT
1 TTCAGTCACCT
477467 TTCAGT
1 TTCAGT
477473 TGACTGAATG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.21, C:0.26, G:0.10, T:0.44
Consensus pattern (11 bp):
TTCAGTCACCT
Found at i:481148 original size:21 final size:21
Alignment explanation
Indices: 481061--481162 Score: 125
Period size: 21 Copynumber: 4.9 Consensus size: 21
481051 CGGTTCGTTA
*
481061 CGCTTTATGAACGGTACGGTT
1 CGCTTTGTGAACGGTACGGTT
* *
481082 CGTTTTGTGAATGGTACGGTT
1 CGCTTTGTGAACGGTACGGTT
* *
481103 CGTTTTGTGAACGGTACGGTA
1 CGCTTTGTGAACGGTACGGTT
*
481124 CGCTTTGTGAACGGAACGGTT
1 CGCTTTGTGAACGGTACGGTT
*
481145 CGCTTCT-TGCACGGTACG
1 CGCTT-TGTGAACGGTACG
481163 CTTTGCTAAA
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
21 69 0.99
22 1 0.01
ACGTcount: A:0.17, C:0.19, G:0.31, T:0.33
Consensus pattern (21 bp):
CGCTTTGTGAACGGTACGGTT
Found at i:482721 original size:2 final size:2
Alignment explanation
Indices: 482716--482744 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
482706 ACACACAAGT
482716 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
482745 GAGGGTGTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:483856 original size:2 final size:2
Alignment explanation
Indices: 483849--483888 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
483839 GGTAACGAGA
483849 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
483889 CCGAGAATCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:484331 original size:21 final size:20
Alignment explanation
Indices: 484308--484429 Score: 102
Period size: 21 Copynumber: 5.8 Consensus size: 20
484298 TTTTGCACGC
*
484308 TTTTTGCACGGTACGGTTCG
1 TTTTTGAACGGTACGGTTCG
*
484328 CTTTGTGAACGGTACGGTTCG
1 -TTTTTGAACGGTACGGTTCG
*
484349 TTTTGTGAATGGTACGGTAT-G
1 TTTT-TGAACGGTACGGT-TCG
* *
484370 CTTTGTGAACGGTACGTTTCG
1 -TTTTTGAACGGTACGGTTCG
* *
484391 TTTTGTGAACGGCATGGTTCG
1 TTTT-TGAACGGTACGGTTCG
* *
484412 TTTCTTGCACGGAACGGT
1 TTT-TTGAACGGTACGGT
484430 ACAATTCGTT
Statistics
Matches: 81, Mismatches: 14, Indels: 12
0.76 0.13 0.11
Matches are distributed among these distances:
20 7 0.09
21 69 0.85
22 5 0.06
ACGTcount: A:0.15, C:0.16, G:0.31, T:0.38
Consensus pattern (20 bp):
TTTTTGAACGGTACGGTTCG
Found at i:484366 original size:42 final size:42
Alignment explanation
Indices: 484317--484399 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
484307 CTTTTTGCAC
484317 GGTACGGT-TCGCTTTGTGAACGGTACGGTTCGTTTTGTGAAT
1 GGTACGGTAT-GCTTTGTGAACGGTACGGTTCGTTTTGTGAAT
*
484359 GGTACGGTATGCTTTGTGAACGGTACGTTTCGTTTTGTGAA
1 GGTACGGTATGCTTTGTGAACGGTACGGTTCGTTTTGTGAA
484400 CGGCATGGTT
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
42 38 0.97
43 1 0.03
ACGTcount: A:0.16, C:0.13, G:0.33, T:0.39
Consensus pattern (42 bp):
GGTACGGTATGCTTTGTGAACGGTACGGTTCGTTTTGTGAAT
Found at i:487413 original size:20 final size:20
Alignment explanation
Indices: 487368--487406 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
487358 TGACCCTCGT
*
487368 AGTATTGTATATTATGATAC
1 AGTATTGTATAATATGATAC
*
487388 AATATTGTATAATATGATA
1 AGTATTGTATAATATGATA
487407 TTGTATTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.41, C:0.03, G:0.13, T:0.44
Consensus pattern (20 bp):
AGTATTGTATAATATGATAC
Found at i:487514 original size:20 final size:20
Alignment explanation
Indices: 487491--487551 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
487481 CATGTTTTAC
*
487491 AATATTATGATGTATTATGT
1 AATATTATGATGTATTATAT
* * *
487511 AATATGATGTTGTATCATAT
1 AATATTATGATGTATTATAT
*
487531 AATACTAT-ATTGTATTATAT
1 AATATTATGA-TGTATTATAT
487551 A
1 A
487552 TTATGATATT
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.38, C:0.03, G:0.11, T:0.48
Consensus pattern (20 bp):
AATATTATGATGTATTATAT
Found at i:487560 original size:20 final size:20
Alignment explanation
Indices: 487501--487568 Score: 75
Period size: 20 Copynumber: 3.4 Consensus size: 20
487491 AATATTATGA
* *
487501 TGTATTATGTAATATGATGT
1 TGTATTATATAATATGATAT
*
487521 TGTATCATATAATACT-ATAT
1 TGTATTATATAATA-TGATAT
*
487541 TGTATTATATATTATGATAT
1 TGTATTATATAATATGATAT
*
487561 TGTTTTAT
1 TGTATTAT
487569 GTGATCAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
19 1 0.03
20 38 0.95
21 1 0.03
ACGTcount: A:0.32, C:0.03, G:0.12, T:0.53
Consensus pattern (20 bp):
TGTATTATATAATATGATAT
Found at i:490284 original size:41 final size:42
Alignment explanation
Indices: 490224--490303 Score: 117
Period size: 41 Copynumber: 1.9 Consensus size: 42
490214 TTTTGTTTAA
* *
490224 ATTGTTAGAATGTAGTTTT-CTTGTTTTACTTAATAATATAC
1 ATTGTTAAAATGTAATTTTCCTTGTTTTACTTAATAATATAC
* *
490265 ATTGTTAAAATGTAATTTTCCTTTTTTTTCTTAATAATA
1 ATTGTTAAAATGTAATTTTCCTTGTTTTACTTAATAATA
490304 AAAATTTGCT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
41 17 0.50
42 17 0.50
ACGTcount: A:0.30, C:0.07, G:0.09, T:0.54
Consensus pattern (42 bp):
ATTGTTAAAATGTAATTTTCCTTGTTTTACTTAATAATATAC
Found at i:495625 original size:172 final size:172
Alignment explanation
Indices: 495339--495742 Score: 745
Period size: 172 Copynumber: 2.3 Consensus size: 172
495329 TCACACTTTT
*
495339 TTGTAAGCGCTCTAATGCCTACAAATTTTGACGGATTTTCATTAAATTTATACCAAATGTTTATA
1 TTGTAAGCGCTCTCATGCCTACAAATTTTGACGGATTTTCATTAAATTTATACCAAATGTTTATA
** *
495404 CCACTGTTACCTTGGTCAAGTTCGAAAATCAGCATTGGTCGATACTTTTTGTTGGAGTTATGGGA
66 CCACTAATACCTTGGTCAAGTTCGAAAATCAGCATTGGTCGATACTTTTTGTTGGAGTTATAGGA
495469 CTTTGACCACAATAATGACTCCGTTTTATCCAAAAATTGACC
131 CTTTGACCACAATAATGACTCCGTTTTATCCAAAAATTGACC
495511 TTGTAAGCGCTCTCATGCCTACAAATTTTGACGGATTTTCATTAAATTTATACCAAATGTTTATA
1 TTGTAAGCGCTCTCATGCCTACAAATTTTGACGGATTTTCATTAAATTTATACCAAATGTTTATA
* * *
495576 CTACTAATACTTTGGTCAAGTTCGAAAATCAGCATTGGTCGATACTTTTTGTTGGAGTTGTAGGA
66 CCACTAATACCTTGGTCAAGTTCGAAAATCAGCATTGGTCGATACTTTTTGTTGGAGTTATAGGA
495641 CTTTGACCACAATAATGACTCCGTTTTATCCAAAAATTGACC
131 CTTTGACCACAATAATGACTCCGTTTTATCCAAAAATTGACC
495683 TTGTAAGCGCTCTCATGCCTACAAATTTTGACGGATTTTCATTAAATTTATACCAAATGT
1 TTGTAAGCGCTCTCATGCCTACAAATTTTGACGGATTTTCATTAAATTTATACCAAATGT
495743 CAAGTTCCTA
Statistics
Matches: 225, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
172 225 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (172 bp):
TTGTAAGCGCTCTCATGCCTACAAATTTTGACGGATTTTCATTAAATTTATACCAAATGTTTATA
CCACTAATACCTTGGTCAAGTTCGAAAATCAGCATTGGTCGATACTTTTTGTTGGAGTTATAGGA
CTTTGACCACAATAATGACTCCGTTTTATCCAAAAATTGACC
Found at i:498150 original size:2 final size:2
Alignment explanation
Indices: 498143--498170 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
498133 TAGACTAAAC
498143 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
498171 CTGTCAATAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:499157 original size:2 final size:2
Alignment explanation
Indices: 499150--499186 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
499140 NNNNNNCTCC
499150 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
499187 ACATAACAGC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:506957 original size:24 final size:24
Alignment explanation
Indices: 506917--506985 Score: 102
Period size: 24 Copynumber: 2.9 Consensus size: 24
506907 CTTTCCTCTG
* * *
506917 CGTCCGTCAGTCCGTCTGTCCGTC
1 CGTCCGTCCGTCTGTCTGTCCATC
506941 CGTCCGTCCGTCTGTCTGTCCATC
1 CGTCCGTCCGTCTGTCTGTCCATC
*
506965 CGTCAGTCCGTCTGTCTGTCC
1 CGTCCGTCCGTCTGTCTGTCC
506986 CACTTCAGTT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.04, C:0.41, G:0.23, T:0.32
Consensus pattern (24 bp):
CGTCCGTCCGTCTGTCTGTCCATC
Found at i:506984 original size:4 final size:4
Alignment explanation
Indices: 506917--506976 Score: 66
Period size: 4 Copynumber: 15.0 Consensus size: 4
506907 CTTTCCTCTG
* * * * *
506917 CGTC CGTC AGTC CGTC TGTC CGTC CGTC CGTC CGTC TGTC TGTC CATC
1 CGTC CGTC CGTC CGTC CGTC CGTC CGTC CGTC CGTC CGTC CGTC CGTC
*
506965 CGTC AGTC CGTC
1 CGTC CGTC CGTC
506977 TGTCTGTCCC
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
4 46 1.00
ACGTcount: A:0.05, C:0.42, G:0.23, T:0.30
Consensus pattern (4 bp):
CGTC
Found at i:516355 original size:15 final size:14
Alignment explanation
Indices: 516335--516373 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
516325 TGTGAAAAAA
516335 CTTTCATAATTATAC
1 CTTTCATAATTA-AC
**
516350 CTTTCACCATTAAC
1 CTTTCATAATTAAC
516364 CTTTCATAAT
1 CTTTCATAAT
516374 GACTATATGA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
14 10 0.50
15 10 0.50
ACGTcount: A:0.31, C:0.26, G:0.00, T:0.44
Consensus pattern (14 bp):
CTTTCATAATTAAC
Found at i:521601 original size:17 final size:17
Alignment explanation
Indices: 521577--521644 Score: 120
Period size: 17 Copynumber: 4.0 Consensus size: 17
521567 ACATGGATAC
521577 ATTATAATATACAATAT
1 ATTATAATATACAATAT
521594 -TCTATAATATACAATAT
1 AT-TATAATATACAATAT
521611 ATTATAATATACAATAT
1 ATTATAATATACAATAT
521628 ATTATAATATACAATAT
1 ATTATAATATACAATAT
521645 TATATGACGA
Statistics
Matches: 49, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
16 1 0.02
17 47 0.96
18 1 0.02
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.41
Consensus pattern (17 bp):
ATTATAATATACAATAT
Found at i:539132 original size:14 final size:14
Alignment explanation
Indices: 539112--539188 Score: 79
Period size: 14 Copynumber: 5.5 Consensus size: 14
539102 TCATTTAATA
* *
539112 AGAGAGACTGGGAG
1 AGAGAGAATGAGAG
*
539126 GGAGAGAATGAGAG
1 AGAGAGAATGAGAG
539140 AGAGAGAGA-GAGAG
1 AGAGAGA-ATGAGAG
539154 AGAGAGAGA-GAGAG
1 AGAGAGA-ATGAGAG
539168 AGAGAGAGA-GAGAG
1 AGAGAGA-ATGAGAG
539182 AGAGAGA
1 AGAGAGA
539189 GACCCATTTT
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
14 57 0.98
15 1 0.02
ACGTcount: A:0.47, C:0.01, G:0.49, T:0.03
Consensus pattern (14 bp):
AGAGAGAATGAGAG
Found at i:539140 original size:2 final size:2
Alignment explanation
Indices: 539135--539190 Score: 112
Period size: 2 Copynumber: 28.0 Consensus size: 2
539125 GGGAGAGAAT
539135 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
539177 GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA
539191 CCCATTTTGG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:541072 original size:17 final size:17
Alignment explanation
Indices: 541052--541084 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
541042 AACTCTCTGT
541052 TTAGCCGATAACTGGTC
1 TTAGCCGATAACTGGTC
541069 TTAGCCGATAACTGGT
1 TTAGCCGATAACTGGT
541085 ACAGTACCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.30
Consensus pattern (17 bp):
TTAGCCGATAACTGGTC
Found at i:541923 original size:2 final size:2
Alignment explanation
Indices: 541916--541972 Score: 114
Period size: 2 Copynumber: 28.5 Consensus size: 2
541906 CATTCGTTCG
541916 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
541958 CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT C
541973 AACGCAATTA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 55 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:542220 original size:22 final size:21
Alignment explanation
Indices: 542176--542220 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
542166 GAATATCCTT
*
542176 TTAAATCCGTTTTCCTTCAGC
1 TTAAATCCGTTTTCCTCCAGC
* *
542197 TTAAATCCATTTTTCCTCCTGC
1 TTAAATCC-GTTTTCCTCCAGC
542219 TT
1 TT
542221 TAGTTTGGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.18, C:0.29, G:0.07, T:0.47
Consensus pattern (21 bp):
TTAAATCCGTTTTCCTCCAGC
Found at i:542478 original size:2 final size:2
Alignment explanation
Indices: 542471--542539 Score: 129
Period size: 2 Copynumber: 34.5 Consensus size: 2
542461 CGTGTTCAAA
542471 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
*
542513 TC TC TC CC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
542540 TGCACAGTGT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 65 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
TC
Found at i:543671 original size:2 final size:2
Alignment explanation
Indices: 543664--543714 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
543654 ATACATTATA
543664 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
543706 CT CT CT CT C
1 CT CT CT CT C
543715 GTATTTAATG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:550622 original size:2 final size:2
Alignment explanation
Indices: 550617--550692 Score: 152
Period size: 2 Copynumber: 38.0 Consensus size: 2
550607 TGGGAAAAAA
550617 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
550659 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
550693 GAAAACTATA
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 74 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:552581 original size:2 final size:2
Alignment explanation
Indices: 552574--552618 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
552564 TGCGGTACAT
552574 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
552616 GA G
1 GA G
552619 CATTCCCATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:553362 original size:2 final size:2
Alignment explanation
Indices: 553355--553422 Score: 118
Period size: 2 Copynumber: 34.0 Consensus size: 2
553345 TAATATACTG
* *
553355 GA GA GA GA GA AA GA AA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
553397 GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA
553423 ATGTTTTATT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 62 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
GA
Found at i:565778 original size:3 final size:3
Alignment explanation
Indices: 565770--565794 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
565760 AAAGATGGTT
565770 CCA CCA CCA CCA CCA CCA CCA CCA C
1 CCA CCA CCA CCA CCA CCA CCA CCA C
565795 TTCCTTACAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.68, G:0.00, T:0.00
Consensus pattern (3 bp):
CCA
Found at i:567507 original size:2 final size:2
Alignment explanation
Indices: 567500--567548 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
567490 CACTATGAAA
567500 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
567542 TC TC TC T
1 TC TC TC T
567549 AACCCTGACG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:574298 original size:167 final size:169
Alignment explanation
Indices: 574082--574534 Score: 651
Period size: 167 Copynumber: 2.7 Consensus size: 169
574072 AGACGATTAT
* * * **
574082 TAAAGATTTAATACATTTTTACTGTATTGCCATATTGGCCCAACCCTAGAACCTAAACATCTGAC
1 TAAAGATTTAATACATTTTTACTATATTGCCATATTGGCCCCACCCTAGAGCCTAAACCCCTGAC
* * **
574147 CCAAGGGTCAGGAATTTCACAATTTTGGTAGAGGGCTTCATGGACATCATAATCATGCATTTAGT
66 CCAGGGGTCATGAATTTCACAATTTTGGTAGAGGGCTTCATGGACATCATAAAAATGCATTTAGT
*
574212 CTTGAACAAATATATATGGGAGTA-AGAAGAAGATTTTC
131 CTTGAACAAATACATATGGGAGTAGAGAAGAAGATTTTC
* * * *
574250 T-AAGATTAAATACATTTTTAATATATGGCCATATTGGCCCCACCCTAGAGCCTGAACCCCTGAC
1 TAAAGATTTAATACATTTTTACTATATTGCCATATTGGCCCCACCCTAGAGCCTAAACCCCTGAC
* * *
574314 TCAGGGGTCATGAACTTCACAATTTTGGTAGAGGTCTTCATGGACATCATAAAAATGCATTTAGT
66 CCAGGGGTCATGAATTTCACAATTTTGGTAGAGGGCTTCATGGACATCATAAAAATGCATTTAGT
* *
574379 TTTTAACAAATACATATGGGAGTAGAGAAGAAGATTTTC
131 CTTGAACAAATACATATGGGAGTAGAGAAGAAGATTTTC
* * *
574418 TAAAAATTTAATACAATTTTACTATATTGCCATACTGGCCCCACCCTAGAGCC-AGAACCCCTGA
1 TAAAGATTTAATACATTTTTACTATATTGCCATATTGGCCCCACCCTAGAGCCTA-AACCCCTGA
* * *
574482 CCCAGGGGCCATGAATTTCACAATTTTTGTACAGGGCTTCATGGACATCATAA
65 CCCAGGGGTCATGAATTTCACAATTTTGGTAGAGGGCTTCATGGACATCATAA
574535 CCGTGCAAAC
Statistics
Matches: 250, Mismatches: 32, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
167 133 0.53
168 16 0.06
169 101 0.40
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (169 bp):
TAAAGATTTAATACATTTTTACTATATTGCCATATTGGCCCCACCCTAGAGCCTAAACCCCTGAC
CCAGGGGTCATGAATTTCACAATTTTGGTAGAGGGCTTCATGGACATCATAAAAATGCATTTAGT
CTTGAACAAATACATATGGGAGTAGAGAAGAAGATTTTC
Found at i:574578 original size:169 final size:168
Alignment explanation
Indices: 573972--574551 Score: 638
Period size: 167 Copynumber: 3.5 Consensus size: 168
573962 CCCCCGTCCT
* * *
573972 GAACCCCTGACACAGGGGCCATCAATTTCACAATTTAGGTAGAGGAG-TT-AGTGGACATCATAA
1 GAACCCCTGACCCAGGGGCCATGAATTTCACAATTTTGGTAGAGG-GCTTCA-TGGACATCATAA
* ** * * * * * *
574035 CCATGTATTCAGTTTTTTGC--CCACTTGTTTGGAGT-A-AAGACGATTAT-TAAAGATTTAATA
64 CCATGCATTCAGTTTTTAACAAACACAT-ATGGGAGTAAGAAGAAGATTTTCTAAAGATTTAATA
* * *
574095 CATTTTTACTGTATTGCCATATTGGCCCAACCCTAGAACCTA
128 CATTTTTACTATATTGCCATATTGGCCCCACCCTAGAGCC-A
** * * * *
574137 -AACATCTGACCCAAGGGTCAGGAATTTCACAATTTTGGTAGAGGGCTTCATGGACATCATAATC
1 GAACCCCTGACCCAGGGGCCATGAATTTCACAATTTTGGTAGAGGGCTTCATGGACATCATAACC
* * * * * *
574201 ATGCATTTAGTCTTGAACAAATATATATGGGAGTAAGAAGAAGATTTTCT-AAGATTAAATACAT
66 ATGCATTCAGTTTTTAACAAACACATATGGGAGTAAGAAGAAGATTTTCTAAAGATTTAATACAT
* * *
574265 TTTTAATATATGGCCATATTGGCCCCACCCTAGAGCCT
131 TTTTACTATATTGCCATATTGGCCCCACCCTAGAGCCA
* * * * **
574303 GAACCCCTGACTCAGGGGTCATGAACTTCACAATTTTGGTAGAGGTCTTCATGGACATCATAAAA
1 GAACCCCTGACCCAGGGGCCATGAATTTCACAATTTTGGTAGAGGGCTTCATGGACATCATAACC
* * *
574368 ATGCATTTAGTTTTTAACAAATACATATGGGAGTAGAGAAGAAGATTTTCTAAAAATTTAATACA
66 ATGCATTCAGTTTTTAACAAACACATATGGGAGTA-AGAAGAAGATTTTCTAAAGATTTAATACA
* *
574433 ATTTTACTATATTGCCATACTGGCCCCACCCTAGAGCCA
130 TTTTTACTATATTGCCATATTGGCCCCACCCTAGAGCCA
* *
574472 GAACCCCTGACCCAGGGGCCATGAATTTCACAATTTTTGTACAGGGCTTCATGGACATCATAACC
1 GAACCCCTGACCCAGGGGCCATGAATTTCACAATTTTGGTAGAGGGCTTCATGGACATCATAACC
* **
574537 GTGCAAACAGTTTTT
66 ATGCATTCAGTTTTT
574552 TCCTCACAAG
Statistics
Matches: 344, Mismatches: 61, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
163 1 0.00
164 63 0.18
165 7 0.02
166 3 0.01
167 141 0.41
168 16 0.05
169 113 0.33
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (168 bp):
GAACCCCTGACCCAGGGGCCATGAATTTCACAATTTTGGTAGAGGGCTTCATGGACATCATAACC
ATGCATTCAGTTTTTAACAAACACATATGGGAGTAAGAAGAAGATTTTCTAAAGATTTAATACAT
TTTTACTATATTGCCATATTGGCCCCACCCTAGAGCCA
Found at i:575739 original size:1 final size:1
Alignment explanation
Indices: 575733--575767 Score: 52
Period size: 1 Copynumber: 35.0 Consensus size: 1
575723 AACGAATAAC
* *
575733 AAAAAAAAAAAAAACAAAAAAAAAAAAAACAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
575768 CCCACAATCC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:0.94, C:0.06, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:575754 original size:16 final size:15
Alignment explanation
Indices: 575730--575767 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
575720 CCCAACGAAT
575730 AACAAAAAAAAAAAA
1 AACAAAAAAAAAAAA
575745 AACAAAAAAAAAAAA
1 AACAAAAAAAAAAAA
575760 AACAAAAA
1 AACAAAAA
575768 CCCACAATCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (15 bp):
AACAAAAAAAAAAAA
Found at i:577580 original size:20 final size:21
Alignment explanation
Indices: 577554--577606 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 21
577544 TAATTTTACA
*
577554 ATTTAATAAGTGTTAATTAAG
1 ATTTAATAAGAGTTAATTAAG
* *
577575 -TTTAATAAAAGTTAATTCAG
1 ATTTAATAAGAGTTAATTAAG
577595 TATTTAATAAGA
1 -ATTTAATAAGA
577607 TTTTTAAAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 17 0.65
22 9 0.35
ACGTcount: A:0.45, C:0.02, G:0.11, T:0.42
Consensus pattern (21 bp):
ATTTAATAAGAGTTAATTAAG
Found at i:608129 original size:2 final size:2
Alignment explanation
Indices: 608122--608184 Score: 126
Period size: 2 Copynumber: 31.5 Consensus size: 2
608112 GCGTTATTAT
608122 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
608164 GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA G
608185 CAAGCAAACC
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 61 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:620388 original size:43 final size:43
Alignment explanation
Indices: 620327--620628 Score: 498
Period size: 43 Copynumber: 7.0 Consensus size: 43
620317 CCTCCTCCAC
* *
620327 AGAGGGAGGTAAAAGTAATAGTACCAGACTGTAGTCACCGAAT
1 AGAGGGAGGTAAAAGTAATAGCACCAGACTGTAGTCCCCGAAT
* * * * *
620370 AGAGGGAGTTTAAAGTAATAGTACCAGACAT-CAGTGCCCGAAT
1 AGAGGGAGGTAAAAGTAATAGCACCAGAC-TGTAGTCCCCGAAT
*
620413 AGAGGGAGGTAAAAGTAATAGCACCAGACTGTAGTTCCCGAAT
1 AGAGGGAGGTAAAAGTAATAGCACCAGACTGTAGTCCCCGAAT
620456 AGAGGGAGGTAAAAGTAATAGCACCAGACTGTAGTCCCCGAAT
1 AGAGGGAGGTAAAAGTAATAGCACCAGACTGTAGTCCCCGAAT
620499 AGAGGGAGGTAAAAGTAATAGCACCAGACTGTAGTCCCCGAAT
1 AGAGGGAGGTAAAAGTAATAGCACCAGACTGTAGTCCCCGAAT
620542 AGAGGGAGGTAAAAGTAATAGCACCAGACTGTAGTCCCCGAAT
1 AGAGGGAGGTAAAAGTAATAGCACCAGACTGTAGTCCCCGAAT
**
620585 AGAGGGAGGTAAAAGTAATAGCACCAGACTAAAGTCCCCGAAT
1 AGAGGGAGGTAAAAGTAATAGCACCAGACTGTAGTCCCCGAAT
620628 A
1 A
620629 AAAAATTAAC
Statistics
Matches: 244, Mismatches: 13, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
42 1 0.00
43 242 0.99
44 1 0.00
ACGTcount: A:0.38, C:0.17, G:0.27, T:0.17
Consensus pattern (43 bp):
AGAGGGAGGTAAAAGTAATAGCACCAGACTGTAGTCCCCGAAT
Found at i:622792 original size:25 final size:24
Alignment explanation
Indices: 622738--622792 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 24
622728 CCCATATACA
622738 GAGACAACCAAGCGTCTGGTTGAC
1 GAGACAACCAAGCGTCTGGTTGAC
* *
622762 GAAGACAGCCGAGCGTCTGGTTGAAC
1 G-AGACAACCAAGCGTCTGGTTG-AC
622788 GAGAC
1 GAGAC
622793 TATTAGGACA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
24 1 0.04
25 23 0.85
26 3 0.11
ACGTcount: A:0.29, C:0.24, G:0.33, T:0.15
Consensus pattern (24 bp):
GAGACAACCAAGCGTCTGGTTGAC
Found at i:625917 original size:2 final size:2
Alignment explanation
Indices: 625912--625958 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
625902 CACACACAAA
625912 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
625954 CT CT C
1 CT CT C
625959 NGTTTAGCCA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:645057 original size:47 final size:47
Alignment explanation
Indices: 644997--645090 Score: 172
Period size: 47 Copynumber: 2.0 Consensus size: 47
644987 TCTGCTACCT
644997 AAAATGTTAAACATTCATTATTAATTGATAACAAATTTTGTTATCAA
1 AAAATGTTAAACATTCATTATTAATTGATAACAAATTTTGTTATCAA
645044 NAAAATGTT-AACATTCATTATTAATTGATAACAAATTTTGTTATCAA
1 -AAAATGTTAAACATTCATTATTAATTGATAACAAATTTTGTTATCAA
645091 TTTCAATTTT
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
47 38 0.83
48 8 0.17
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.40
Consensus pattern (47 bp):
AAAATGTTAAACATTCATTATTAATTGATAACAAATTTTGTTATCAA
Found at i:649614 original size:66 final size:66
Alignment explanation
Indices: 649515--649649 Score: 270
Period size: 66 Copynumber: 2.0 Consensus size: 66
649505 ATGATTATAT
649515 TTAAGGTCTTCCGTTGGAAACGGAAGACCTTATTGTTTTTGCTTTGTTTCTTTTCCTCTATTATT
1 TTAAGGTCTTCCGTTGGAAACGGAAGACCTTATTGTTTTTGCTTTGTTTCTTTTCCTCTATTATT
649580 A
66 A
649581 TTAAGGTCTTCCGTTGGAAACGGAAGACCTTATTGTTTTTGCTTTGTTTCTTTTCCTCTATTATT
1 TTAAGGTCTTCCGTTGGAAACGGAAGACCTTATTGTTTTTGCTTTGTTTCTTTTCCTCTATTATT
649646 A
66 A
649647 TTA
1 TTA
649650 NNNNNNNNNN
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 69 1.00
ACGTcount: A:0.19, C:0.16, G:0.16, T:0.49
Consensus pattern (66 bp):
TTAAGGTCTTCCGTTGGAAACGGAAGACCTTATTGTTTTTGCTTTGTTTCTTTTCCTCTATTATT
A
Found at i:662691 original size:130 final size:130
Alignment explanation
Indices: 662458--662717 Score: 511
Period size: 130 Copynumber: 2.0 Consensus size: 130
662448 NNNNNNNNNN
662458 GGGAATTATTTCGCGTCAGCAATGTTTTGAGACACCTGCAAAGGCTGTGTGTTCTAATCTCGCCA
1 GGGAATTATTTCGCGTCAGCAATGTTTTGAGACACCTGCAAAGGCTGTGTGTTCTAATCTCGCCA
*
662523 GAGCCAAGATTTGTTCTTTCTCTCTATTTCTTTCTCTCCTTTTTGTCTAATTTTCTTACTAAAAT
66 GAGCCAAGATTTGTTCTTTCTCTCTATTTCTTTCTCTCCTTTTTGTCTAATTTTCTAACTAAAAT
662588 GGGAATTATTTCGCGTCAGCAATGTTTTGAGACACCTGCAAAGGCTGTGTGTTCTAATCTCGCCA
1 GGGAATTATTTCGCGTCAGCAATGTTTTGAGACACCTGCAAAGGCTGTGTGTTCTAATCTCGCCA
662653 GAGCCAAGATTTGTTCTTTCTCTCTATTTCTTTCTCTCCTTTTTGTCTAATTTTCTAACTAAAAT
66 GAGCCAAGATTTGTTCTTTCTCTCTATTTCTTTCTCTCCTTTTTGTCTAATTTTCTAACTAAAAT
662718 ATTCAACATA
Statistics
Matches: 129, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
130 129 1.00
ACGTcount: A:0.21, C:0.22, G:0.16, T:0.41
Consensus pattern (130 bp):
GGGAATTATTTCGCGTCAGCAATGTTTTGAGACACCTGCAAAGGCTGTGTGTTCTAATCTCGCCA
GAGCCAAGATTTGTTCTTTCTCTCTATTTCTTTCTCTCCTTTTTGTCTAATTTTCTAACTAAAAT
Found at i:676453 original size:2 final size:2
Alignment explanation
Indices: 676446--676487 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
676436 ACCTGCATAA
676446 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
676488 AAAATCAGCT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:677368 original size:4 final size:4
Alignment explanation
Indices: 677359--677385 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
677349 TTTGTGTATT
677359 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
677386 TGCATATCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:686062 original size:1 final size:1
Alignment explanation
Indices: 686056--686090 Score: 70
Period size: 1 Copynumber: 35.0 Consensus size: 1
686046 TGCGTTACAG
686056 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
686091 ATCTACCTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Found at i:692724 original size:21 final size:21
Alignment explanation
Indices: 692698--692780 Score: 103
Period size: 21 Copynumber: 4.0 Consensus size: 21
692688 TATTTCTATC
692698 AAATATGTCGACATGCAAGAT
1 AAATATGTCGACATGCAAGAT
*
692719 AAATATGTTGACATGCAAGAT
1 AAATATGTCGACATGCAAGAT
** * *
692740 AGTTATGTCAACATGCAACAT
1 AAATATGTCGACATGCAAGAT
* *
692761 AACTATGTTGACATGCAAGA
1 AAATATGTCGACATGCAAGA
692781 AATTGCAATC
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 51 1.00
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (21 bp):
AAATATGTCGACATGCAAGAT
Found at i:692768 original size:42 final size:42
Alignment explanation
Indices: 692701--692780 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 42
692691 TTCTATCAAA
* *
692701 TATGTCGACATGCAAGATAAATATGTTGACATGCAAGATAGT
1 TATGTCAACATGCAACATAAATATGTTGACATGCAAGATAGT
*
692743 TATGTCAACATGCAACATAACTATGTTGACATGCAAGA
1 TATGTCAACATGCAACATAAATATGTTGACATGCAAGA
692781 AATTGCAATC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.28
Consensus pattern (42 bp):
TATGTCAACATGCAACATAAATATGTTGACATGCAAGATAGT
Found at i:692956 original size:21 final size:21
Alignment explanation
Indices: 692931--692987 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
692921 CATCCAACTT
*
692931 ATAAGTTTCATGTCAACATAA
1 ATAAGTTGCATGTCAACATAA
* **
692952 CTAAGTTGCATGTTGACATAA
1 ATAAGTTGCATGTCAACATAA
*
692973 ATATGTTGCATGTCA
1 ATAAGTTGCATGTCA
692988 TAGTTATGTC
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (21 bp):
ATAAGTTGCATGTCAACATAA
Found at i:693044 original size:21 final size:21
Alignment explanation
Indices: 693020--693067 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
693010 TTGCATGTTG
693020 ACATAACTATCT-TGCATATCA
1 ACATAACTATCTCT-CATATCA
** *
693041 ACATATTTATCTCTCATGTCA
1 ACATAACTATCTCTCATATCA
693062 ACATAA
1 ACATAA
693068 TTAAGAGAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 21 0.95
22 1 0.05
ACGTcount: A:0.38, C:0.23, G:0.04, T:0.35
Consensus pattern (21 bp):
ACATAACTATCTCTCATATCA
Found at i:702878 original size:38 final size:38
Alignment explanation
Indices: 702825--702899 Score: 105
Period size: 38 Copynumber: 2.0 Consensus size: 38
702815 CGTGTATACA
* * *
702825 ATTTAAATGGCATTTATTTTCATTGGAATGAAATGATG
1 ATTTAAATGGCATTTAATTTAATTGAAATGAAATGATG
* *
702863 ATTTTAATGGTATTTAATTTAATTGAAATGAAATGAT
1 ATTTAAATGGCATTTAATTTAATTGAAATGAAATGAT
702900 CCCCAGAATA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.37, C:0.03, G:0.16, T:0.44
Consensus pattern (38 bp):
ATTTAAATGGCATTTAATTTAATTGAAATGAAATGATG
Found at i:704347 original size:22 final size:21
Alignment explanation
Indices: 704322--704370 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
704312 TTTTTGAAAA
* *
704322 TTTGGTTCCATTCGGGTTTTAC
1 TTTGGTT-CACTCGGGGTTTAC
*
704344 TTTGGGTTTACTCGGGGTTTAC
1 TTT-GGTTCACTCGGGGTTTAC
704366 TTTGG
1 TTTGG
704371 GTTTATTTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 2 0.09
22 17 0.74
23 4 0.17
ACGTcount: A:0.08, C:0.14, G:0.29, T:0.49
Consensus pattern (21 bp):
TTTGGTTCACTCGGGGTTTAC
Found at i:704353 original size:11 final size:11
Alignment explanation
Indices: 704339--704380 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
704329 CCATTCGGGT
704339 TTTACTTTGGG
1 TTTACTTTGGG
**
704350 TTTACTCGGGG
1 TTTACTTTGGG
704361 TTTACTTTGGG
1 TTTACTTTGGG
*
704372 TTTATTTTG
1 TTTACTTTG
704381 AAATTGCTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.10, C:0.10, G:0.26, T:0.55
Consensus pattern (11 bp):
TTTACTTTGGG
Found at i:704371 original size:22 final size:22
Alignment explanation
Indices: 704333--704375 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
704323 TTGGTTCCAT
*
704333 TCGGGTTTTACTTTGGGTTTAC
1 TCGGGGTTTACTTTGGGTTTAC
704355 TCGGGGTTTACTTTGGGTTTA
1 TCGGGGTTTACTTTGGGTTTA
704376 TTTTGAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.09, C:0.12, G:0.30, T:0.49
Consensus pattern (22 bp):
TCGGGGTTTACTTTGGGTTTAC
Found at i:709104 original size:14 final size:14
Alignment explanation
Indices: 709085--709111 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
709075 GCCAGCGTTT
709085 AAAGGTGAGAATTG
1 AAAGGTGAGAATTG
709099 AAAGGTGAGAATT
1 AAAGGTGAGAATT
709112 TTAATATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.33, T:0.22
Consensus pattern (14 bp):
AAAGGTGAGAATTG
Found at i:709985 original size:13 final size:13
Alignment explanation
Indices: 709963--709993 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
709953 TTATGTGTTT
*
709963 TATATGTGTAAAA
1 TATATATGTAAAA
709976 TATATATGTAAAA
1 TATATATGTAAAA
709989 TATAT
1 TATAT
709994 GTTTAACACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.42
Consensus pattern (13 bp):
TATATATGTAAAA
Found at i:714214 original size:12 final size:11
Alignment explanation
Indices: 714197--714227 Score: 53
Period size: 12 Copynumber: 2.7 Consensus size: 11
714187 AAAGTTTACA
714197 GACGGACAGAC
1 GACGGACAGAC
714208 GGACGGACAGAC
1 -GACGGACAGAC
714220 GACGGACA
1 GACGGACA
714228 AAATGTGATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.35, C:0.26, G:0.39, T:0.00
Consensus pattern (11 bp):
GACGGACAGAC
Found at i:716459 original size:10 final size:11
Alignment explanation
Indices: 716433--716485 Score: 92
Period size: 10 Copynumber: 5.0 Consensus size: 11
716423 TATTTAAAGC
716433 TCATTGGGGTA
1 TCATTGGGGTA
716444 TCATTGGGGT-
1 TCATTGGGGTA
716454 TCATTGGGGTA
1 TCATTGGGGTA
716465 TCATTGGGGT-
1 TCATTGGGGTA
716475 TCATTGGGGTA
1 TCATTGGGGTA
716486 AAAAGACGCA
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
10 20 0.50
11 20 0.50
ACGTcount: A:0.15, C:0.09, G:0.38, T:0.38
Consensus pattern (11 bp):
TCATTGGGGTA
Found at i:716459 original size:21 final size:21
Alignment explanation
Indices: 716433--716485 Score: 106
Period size: 21 Copynumber: 2.5 Consensus size: 21
716423 TATTTAAAGC
716433 TCATTGGGGTATCATTGGGGT
1 TCATTGGGGTATCATTGGGGT
716454 TCATTGGGGTATCATTGGGGT
1 TCATTGGGGTATCATTGGGGT
716475 TCATTGGGGTA
1 TCATTGGGGTA
716486 AAAAGACGCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.15, C:0.09, G:0.38, T:0.38
Consensus pattern (21 bp):
TCATTGGGGTATCATTGGGGT
Found at i:727014 original size:21 final size:21
Alignment explanation
Indices: 726988--727045 Score: 80
Period size: 21 Copynumber: 2.8 Consensus size: 21
726978 CAAATTAAAT
726988 ATATGTCGACATGCAAGATAA
1 ATATGTCGACATGCAAGATAA
* *
727009 ATATGTTGACATGCAAGATAG
1 ATATGTCGACATGCAAGATAA
* *
727030 TTATGTCAACATGCAA
1 ATATGTCGACATGCAA
727046 CAATACTACG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.28
Consensus pattern (21 bp):
ATATGTCGACATGCAAGATAA
Found at i:727036 original size:42 final size:42
Alignment explanation
Indices: 726989--727068 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
726979 AAATTAAATA
* * *
726989 TATGTCGACATGCAA-GATAAATATGTTGACATGCAAGATAGT
1 TATGTCAACATGCAACAAT-AATACGTTGACATGCAAGATAGT
*
727031 TATGTCAACATGCAACAATACTACGTTGACATGCAAGA
1 TATGTCAACATGCAACAATAATACGTTGACATGCAAGA
727069 AAATTGCAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 31 0.94
43 2 0.06
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (42 bp):
TATGTCAACATGCAACAATAATACGTTGACATGCAAGATAGT
Found at i:737570 original size:4 final size:4
Alignment explanation
Indices: 737561--737642 Score: 92
Period size: 4 Copynumber: 20.5 Consensus size: 4
737551 TGGTAGGTTT
* * * * * *
737561 TCTC TCTC TCTT TCTT TCTT TCTC TCTC TCTC CCTC TCTT TCTC TGTC
1 TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC
* *
737609 TCTC TCTC GCTC TCTC TCTC TTTC TCTC TCTC TC
1 TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TC
737643 CTAATTTCCA
Statistics
Matches: 66, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
4 66 1.00
ACGTcount: A:0.00, C:0.44, G:0.02, T:0.54
Consensus pattern (4 bp):
TCTC
Found at i:737600 original size:24 final size:24
Alignment explanation
Indices: 737561--737643 Score: 103
Period size: 24 Copynumber: 3.4 Consensus size: 24
737551 TGGTAGGTTT
* *
737561 TCTCTCTCTCTTTCTTTCTTTCTC
1 TCTCTCTCCCTCTCTTTCTTTCTC
737585 TCTCTCTCCCTCTCTTTCTCTGTCTC
1 TCTCTCTCCCTCTCTTTCT-T-TCTC
* * *
737611 TCTCTCGCTCTCTCTCTCTTTCTC
1 TCTCTCTCCCTCTCTTTCTTTCTC
737635 TCTCTCTCC
1 TCTCTCTCC
737644 TAATTTCCAA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
24 28 0.56
25 2 0.04
26 20 0.40
ACGTcount: A:0.00, C:0.45, G:0.02, T:0.53
Consensus pattern (24 bp):
TCTCTCTCCCTCTCTTTCTTTCTC
Found at i:747569 original size:28 final size:28
Alignment explanation
Indices: 747538--747595 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
747528 GATTAAAGTA
747538 TTACTTTAATCAATAATTTTCAAAAGGT
1 TTACTTTAATCAATAATTTTCAAAAGGT
747566 TTACTTTAATCAATAATTTTCAAAAGGT
1 TTACTTTAATCAATAATTTTCAAAAGGT
747594 TT
1 TT
747596 CGCATGATGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.45
Consensus pattern (28 bp):
TTACTTTAATCAATAATTTTCAAAAGGT
Found at i:748698 original size:16 final size:16
Alignment explanation
Indices: 748679--748712 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
748669 TGATAATAAA
* *
748679 ATAAAATGTAAATATG
1 ATAAAATCTAAACATG
748695 ATAAAATCTAAACATG
1 ATAAAATCTAAACATG
748711 AT
1 AT
748713 TTCCCTTTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.06, G:0.09, T:0.29
Consensus pattern (16 bp):
ATAAAATCTAAACATG
Found at i:755180 original size:26 final size:26
Alignment explanation
Indices: 755144--755200 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
755134 ACAGTCAATC
*
755144 AATTTAGCATGTACAATACTTAGCAG
1 AATTTAGCATGCACAATACTTAGCAG
** *
755170 AATTTAGCATGCATTATATTTAGCAG
1 AATTTAGCATGCACAATACTTAGCAG
755196 AATTT
1 AATTT
755201 CTTTTTAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (26 bp):
AATTTAGCATGCACAATACTTAGCAG
Found at i:756169 original size:1 final size:1
Alignment explanation
Indices: 756165--756192 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
756155 CTGGAACAAT
756165 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
756193 TACAAATATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:761293 original size:2 final size:2
Alignment explanation
Indices: 761288--761333 Score: 74
Period size: 2 Copynumber: 23.0 Consensus size: 2
761278 AATCACACAA
* *
761288 TC TC TC TC TC TC TC TC TC TC TC GC TC TC TC TC TC TC TC CC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
761330 TC TC
1 TC TC
761334 AAAATATAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.00, C:0.52, G:0.02, T:0.46
Consensus pattern (2 bp):
TC
Found at i:762604 original size:2 final size:2
Alignment explanation
Indices: 762599--762639 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
762589 ACCCCCCCTT
762599 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
762640 GAGAGTATCT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:764430 original size:69 final size:70
Alignment explanation
Indices: 764350--764816 Score: 637
Period size: 69 Copynumber: 6.8 Consensus size: 70
764340 GCTACCCTGA
* *
764350 GGTTTATCTCTGAAGGTTTTGACTATAATATGACTACCTCAGTCTGTTGTCTGACTAGCTCTTGC
1 GGTTTACCTCTGAAGGTGTTGACTATAATATGACTACCTCAGTCTGTTGTCTGACTAGCTCTTGC
**
764415 TTG-G
66 CCGAG
* *
764419 GGTTTACCTCTGAAGGTGTTGACTATAATATGACTACCTTAGTCTGTAGTCTGACTAGCTCTTGC
1 GGTTTACCTCTGAAGGTGTTGACTATAATATGACTACCTCAGTCTGTTGTCTGACTAGCTCTTGC
*
764484 CTG-G
66 CCGAG
* * * *
764488 GGTTTACCTCTGAAGGTGTTGACTATAGTATGATTACCTCAGTCTGTAGTCTGACCAGCTCTTGC
1 GGTTTACCTCTGAAGGTGTTGACTATAATATGACTACCTCAGTCTGTTGTCTGACTAGCTCTTGC
*
764553 CTGA-
66 CCGAG
* * *
764557 TGTTTACCTCTGAAGGTGTTTACTATAATATGACTACCTCAGTCGGTAT-TCTGACTAGCTCTTG
1 GGTTTACCTCTGAAGGTGTTGACTATAATATGACTACCTCAGTCTGT-TGTCTGACTAGCTCTTG
764621 CCCGAG
65 CCCGAG
* * *
764627 GG-TTACCTCTGAAGGTGTTAACTATCATATGACTACCTCAGTCGGTAT-TCTGACTAGCTCTTG
1 GGTTTACCTCTGAAGGTGTTGACTATAATATGACTACCTCAGTCTGT-TGTCTGACTAGCTCTTG
764690 CCCGAG
65 CCCGAG
* * * *
764696 GG-TTACCTCTGAAGGTGTTAACTATCATATGACTACCTCAGTCGGTAT-TCTGACTAGTTCTTG
1 GGTTTACCTCTGAAGGTGTTGACTATAATATGACTACCTCAGTCTGT-TGTCTGACTAGCTCTTG
764759 CCCGAG
65 CCCGAG
*
764765 GG-TTACCTCTGAAGGTGTTGACTATAATATGACTACCTCAGTCTGTAGTCTG
1 GGTTTACCTCTGAAGGTGTTGACTATAATATGACTACCTCAGTCTGTTGTCTG
764817 GGGCTTACCT
Statistics
Matches: 369, Mismatches: 25, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
69 368 1.00
70 1 0.00
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.35
Consensus pattern (70 bp):
GGTTTACCTCTGAAGGTGTTGACTATAATATGACTACCTCAGTCTGTTGTCTGACTAGCTCTTGC
CCGAG
Found at i:766287 original size:7 final size:6
Alignment explanation
Indices: 766265--766304 Score: 62
Period size: 6 Copynumber: 6.3 Consensus size: 6
766255 ATTTTTAGGT
766265 TTGACC TTGACC TTGACCC TTGACC TTTGACC TTGACC TT
1 TTGACC TTGACC TTGA-CC TTGACC -TTGACC TTGACC TT
766305 TAAGGACCTG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 20 0.62
7 12 0.38
ACGTcount: A:0.15, C:0.33, G:0.15, T:0.38
Consensus pattern (6 bp):
TTGACC
Found at i:766305 original size:13 final size:13
Alignment explanation
Indices: 766264--766305 Score: 68
Period size: 13 Copynumber: 3.2 Consensus size: 13
766254 TATTTTTAGG
766264 TTTGACCTTGACC
1 TTTGACCTTGACC
766277 -TTGACCCTTGACC
1 TTTGA-CCTTGACC
766290 TTTGACCTTGACC
1 TTTGACCTTGACC
766303 TTT
1 TTT
766306 AAGGACCTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 4 0.15
13 19 0.70
14 4 0.15
ACGTcount: A:0.14, C:0.31, G:0.14, T:0.40
Consensus pattern (13 bp):
TTTGACCTTGACC
Found at i:766415 original size:6 final size:6
Alignment explanation
Indices: 766404--766449 Score: 65
Period size: 6 Copynumber: 7.2 Consensus size: 6
766394 ATTTTTAGGT
766404 TTGACC TTGACC TTTGACC TTGACC TTTGACC TTTGACC TTGACC T
1 TTGACC TTGACC -TTGACC TTGACC -TTGACC -TTGACC TTGACC T
766450 CTTAGAACTA
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
6 19 0.50
7 19 0.50
ACGTcount: A:0.15, C:0.30, G:0.15, T:0.39
Consensus pattern (6 bp):
TTGACC
Found at i:766421 original size:13 final size:13
Alignment explanation
Indices: 766403--766449 Score: 78
Period size: 13 Copynumber: 3.6 Consensus size: 13
766393 TATTTTTAGG
766403 TTTGACCTTGACC
1 TTTGACCTTGACC
766416 TTTGACCTTGACC
1 TTTGACCTTGACC
766429 TTTGACCTTTGACC
1 TTTGACC-TTGACC
766443 -TTGACCT
1 TTTGACCT
766450 CTTAGAACTA
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
12 1 0.03
13 26 0.79
14 6 0.18
ACGTcount: A:0.15, C:0.30, G:0.15, T:0.40
Consensus pattern (13 bp):
TTTGACCTTGACC
Found at i:766422 original size:7 final size:7
Alignment explanation
Indices: 766403--766449 Score: 73
Period size: 7 Copynumber: 7.1 Consensus size: 7
766393 TATTTTTAGG
766403 TTTGACC
1 TTTGACC
766410 -TTGACC
1 TTTGACC
766416 TTTGACC
1 TTTGACC
766423 -TTGACC
1 TTTGACC
766429 TTTGACC
1 TTTGACC
766436 TTTGACC
1 TTTGACC
766443 -TTGACC
1 TTTGACC
766449 T
1 T
766450 CTTAGAACTA
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
6 18 0.49
7 19 0.51
ACGTcount: A:0.15, C:0.30, G:0.15, T:0.40
Consensus pattern (7 bp):
TTTGACC
Found at i:767139 original size:2 final size:2
Alignment explanation
Indices: 767132--767162 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
767122 GGAAACAAAA
767132 CT CT CT CT CT CT CT CT CT C- CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
767163 NNNNNNNNNN
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:767338 original size:2 final size:2
Alignment explanation
Indices: 767331--767375 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
767321 NNNNNNNNNN
767331 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
767373 CT C
1 CT C
767376 AATTATAAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:768800 original size:21 final size:21
Alignment explanation
Indices: 768774--768817 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
768764 CTAGTGTTCC
768774 CATAGTTACCATACTGAGAAT
1 CATAGTTACCATACTGAGAAT
768795 CATAGTTACCATACTGAGAAT
1 CATAGTTACCATACTGAGAAT
768816 CA
1 CA
768818 AACAGAATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (21 bp):
CATAGTTACCATACTGAGAAT
Found at i:769421 original size:13 final size:13
Alignment explanation
Indices: 769403--769444 Score: 61
Period size: 13 Copynumber: 3.4 Consensus size: 13
769393 CATGCATGGA
769403 AAAATGTACTAGT
1 AAAATGTACTAGT
769416 AAAATGTACTAG-
1 AAAATGTACTAGT
*
769428 -AAATGTACTAAT
1 AAAATGTACTAGT
769440 AAAAT
1 AAAAT
769445 TTCAAATATT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
11 10 0.38
13 16 0.62
ACGTcount: A:0.52, C:0.07, G:0.12, T:0.29
Consensus pattern (13 bp):
AAAATGTACTAGT
Found at i:774347 original size:2 final size:2
Alignment explanation
Indices: 774340--774379 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
774330 AGTTTAGTCA
774340 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
774380 ATTCAAAAAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:775450 original size:2 final size:2
Alignment explanation
Indices: 775443--775495 Score: 99
Period size: 2 Copynumber: 27.0 Consensus size: 2
775433 TGGGTTACAG
775443 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G- GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
775484 GA GA GA GA GA GA
1 GA GA GA GA GA GA
775496 TAAGCACCTG
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 49 0.98
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:776500 original size:18 final size:20
Alignment explanation
Indices: 776479--776515 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
776469 TATTTCACCA
*
776479 TCAAT-TTTTTTA-AAATGC
1 TCAATCTTTATTACAAATGC
776497 TCAATCTTTATTACAAATG
1 TCAATCTTTATTACAAATG
776516 TATTGACTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 5 0.31
19 6 0.38
20 5 0.31
ACGTcount: A:0.35, C:0.14, G:0.05, T:0.46
Consensus pattern (20 bp):
TCAATCTTTATTACAAATGC
Found at i:777276 original size:19 final size:19
Alignment explanation
Indices: 777252--777289 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
777242 AAGTTCATTA
*
777252 TAAGGCTCCTTTTACTAAC
1 TAAGGCTCCATTTACTAAC
*
777271 TAAGGCTCCATTTATTAAC
1 TAAGGCTCCATTTACTAAC
777290 CATTTCCTCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.37
Consensus pattern (19 bp):
TAAGGCTCCATTTACTAAC
Found at i:779306 original size:15 final size:17
Alignment explanation
Indices: 779286--779317 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
779276 CCAAGGAAAC
779286 TAAAAGT-T-TATTTTT
1 TAAAAGTATGTATTTTT
779301 TAAAAGTATGTATTTTT
1 TAAAAGTATGTATTTTT
779318 CATAGTTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.56
Consensus pattern (17 bp):
TAAAAGTATGTATTTTT
Found at i:782580 original size:2 final size:2
Alignment explanation
Indices: 782573--782620 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
782563 AATTCAAATC
782573 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
782615 AG AG AG
1 AG AG AG
782621 NNNNNNNNNN
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:782778 original size:2 final size:2
Alignment explanation
Indices: 782771--782806 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
782761 NNNNNNNNNN
782771 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
782807 AGGGTCTTCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:785165 original size:4 final size:4
Alignment explanation
Indices: 785156--785286 Score: 226
Period size: 4 Copynumber: 32.8 Consensus size: 4
785146 TATTTGTATG
785156 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * *
785204 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCCA TCCA TCCA TCCA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
785252 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCT
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCT
785287 NNNNNNNNNN
Statistics
Matches: 125, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
4 125 1.00
ACGTcount: A:0.24, C:0.28, G:0.00, T:0.47
Consensus pattern (4 bp):
TCTA
Found at i:786329 original size:2 final size:2
Alignment explanation
Indices: 786317--786376 Score: 102
Period size: 2 Copynumber: 30.0 Consensus size: 2
786307 AGCGGAGTAT
* *
786317 GA GA CA GA GA GA GA AA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
786359 GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA
786377 NNNNNNNNNN
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.52, C:0.02, G:0.47, T:0.00
Consensus pattern (2 bp):
GA
Found at i:786401 original size:2 final size:2
Alignment explanation
Indices: 786394--786419 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
786384 NNNNNNNNNN
786394 GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA
786420 AATAATCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:794923 original size:30 final size:30
Alignment explanation
Indices: 794887--795099 Score: 399
Period size: 30 Copynumber: 7.1 Consensus size: 30
794877 CCTTTTACAA
794887 ATCTCTGTAGGCGCCTGTACATTTGTATGT
1 ATCTCTGTAGGCGCCTGTACATTTGTATGT
794917 ATCTCTGTAGGCGCCTGTACATTTGTATGT
1 ATCTCTGTAGGCGCCTGTACATTTGTATGT
*
794947 ATCTGTGTAGGCGCCTGTACATTTGTATGT
1 ATCTCTGTAGGCGCCTGTACATTTGTATGT
794977 ATCTCTGTAGGCGCCTGTACATTTGTATGT
1 ATCTCTGTAGGCGCCTGTACATTTGTATGT
795007 ATCTCTGTAGGCGCCTGTACATTTGTATGT
1 ATCTCTGTAGGCGCCTGTACATTTGTATGT
* *
795037 ATCTCTGTAGGGGCATGTACATTTGTATGT
1 ATCTCTGTAGGCGCCTGTACATTTGTATGT
795067 ATCTCTGTAGGCGCCTGTACATTTGTATGT
1 ATCTCTGTAGGCGCCTGTACATTTGTATGT
795097 ATC
1 ATC
795100 GAGGACAAAA
Statistics
Matches: 177, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 177 1.00
ACGTcount: A:0.17, C:0.19, G:0.24, T:0.40
Consensus pattern (30 bp):
ATCTCTGTAGGCGCCTGTACATTTGTATGT
Found at i:796568 original size:28 final size:29
Alignment explanation
Indices: 796504--796568 Score: 87
Period size: 29 Copynumber: 2.3 Consensus size: 29
796494 CTATATAATT
* *
796504 ATTACATTTATATGTACATATATCTGACC
1 ATTACATTTATATGGACATATATATGACC
* *
796533 ATTACATTTATATGGACGTGT-TATGACC
1 ATTACATTTATATGGACATATATATGACC
796561 ATTACATT
1 ATTACATT
796569 ATTATGTATA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 14 0.44
29 18 0.56
ACGTcount: A:0.32, C:0.15, G:0.11, T:0.42
Consensus pattern (29 bp):
ATTACATTTATATGGACATATATATGACC
Found at i:798700 original size:18 final size:18
Alignment explanation
Indices: 798674--798715 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
798664 AATGTTCATG
*
798674 TAACCATGGTAACAGATA
1 TAACAATGGTAACAGATA
798692 TAACAATGGTAACAGATA
1 TAACAATGGTAACAGATA
*
798710 TGACAA
1 TAACAA
798716 GTCAAATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.21
Consensus pattern (18 bp):
TAACAATGGTAACAGATA
Found at i:800891 original size:27 final size:27
Alignment explanation
Indices: 800860--800913 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
800850 GAGCTTGCAT
800860 GAAGAGTATAGGACCAGATTGATAAGA
1 GAAGAGTATAGGACCAGATTGATAAGA
800887 GAAGAGTATAGGACCAGATTGATAAGA
1 GAAGAGTATAGGACCAGATTGATAAGA
800914 TTTTGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.44, C:0.07, G:0.30, T:0.19
Consensus pattern (27 bp):
GAAGAGTATAGGACCAGATTGATAAGA
Found at i:801224 original size:16 final size:16
Alignment explanation
Indices: 801203--801235 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
801193 ATGGTAGCCA
801203 TATCACGTGGCGTCTC
1 TATCACGTGGCGTCTC
801219 TATCACGTGGCGTCTC
1 TATCACGTGGCGTCTC
801235 T
1 T
801236 CAGATTAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.30, G:0.24, T:0.33
Consensus pattern (16 bp):
TATCACGTGGCGTCTC
Done.