Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold301
Parameters: 2 7 7 80 10 50 500
Length:  1229110

Tables:   1   2   3   4   

This is table  4  of  4  ( 385 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1153391--1153820
18
23.9
18
75
3
274
16
44
6
32
1.74
1153391--1153820
36
11.9
36
77
4
312
16
44
6
32
1.74
1153391--1153672
54
5.2
54
85
1
309
16
44
6
32
1.73
1153697--1153813
9
13.0
9
73
0
99
16
45
6
31
1.73
1153422--1153792
27
14.1
27
68
8
138
15
44
7
32
1.74
1153917--1154090
30
5.8
30
88
5
228
5
13
33
48
1.64
1154080--1154119
12
3.3
12
92
0
62
0
7
32
60
1.25
1157313--1157360
1
48.0
1
100
0
96
0
0
0
100
0.00
1159458--1159513
2
28.0
2
100
0
112
0
50
0
50
1.00
1170703--1170735
15
2.2
15
100
0
66
48
15
12
24
1.78
1175972--1176016
2
22.5
2
100
0
90
0
51
0
48
1.00
1180718--1180772
2
27.5
2
100
0
110
50
0
49
0
1.00
1189205--1189340
5
27.4
5
81
10
163
56
22
16
4
1.58
1189588--1189666
2
40.0
2
94
2
142
50
0
49
0
1.00
1189753--1189784
3
10.7
3
93
0
55
31
0
34
34
1.58
1190527--1190608
5
16.2
5
83
7
103
3
15
23
57
1.54
1195717--1195910
48
4.0
48
81
0
208
30
20
9
39
1.85
1207973--1208031
17
3.5
16
86
4
73
25
20
22
32
1.98
1208195--1208266
37
2.0
36
83
2
90
22
13
19
44
1.86
1210034--1210058
2
12.5
2
100
0
50
52
0
0
48
1.00
1210060--1210086
2
13.5
2
100
0
54
51
48
0
0
1.00
1212038--1212492
35
12.8
35
86
3
597
27
23
12
36
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1212499--1212801
35
8.4
35
81
5
318
28
21
12
37
1.90
1212511--1212792
148
1.9
148
85
1
395
26
21
12
38
1.89
1216387--1216425
2
19.5
2
100
0
78
48
0
51
0
1.00

Tables:   1   2   3   4

The End!