Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: scaffold53 Parameters: 2 7 7 80 10 50 500 Length: 1214666

Tables:   1   2   3   4   

This is table  3  of  4  ( 373 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
741232--741256
1
25.0
1
100
0
50
0
0
0
100
0.00
743780--743814
2
17.5
2
100
0
70
0
48
0
51
1.00
752039--752153
46
2.8
38
76
18
131
31
17
24
26
1.97
752055--752151
46
2.1
45
94
1
167
29
14
23
31
1.94
758534--758566
14
2.4
14
100
0
66
24
6
0
69
1.10
766558--766598
2
20.5
2
94
0
73
46
0
0
53
1.00
768075--768217
53
2.7
53
93
4
243
38
15
18
27
1.91
775309--775359
20
2.7
18
74
11
57
27
11
21
39
1.88
777095--777258
82
2.0
83
89
1
249
23
17
15
42
1.88
778109--778134
12
2.2
12
100
0
52
23
7
7
61
1.49
779786--780016
119
1.9
118
81
2
275
38
15
12
34
1.84
781086--781135
2
25.0
2
100
0
100
0
50
0
50
1.00
790152--790199
20
2.6
18
75
12
51
29
8
22
39
1.83
805902--806104
105
1.9
105
90
0
325
41
14
8
34
1.77
808595--808625
15
2.1
15
93
0
53
38
3
19
38
1.68
813819--813904
43
2.0
43
93
0
145
34
8
23
33
1.84
823153--823345
98
2.0
93
86
5
260
29
17
16
36
1.92
831276--831404
32
4.0
32
97
0
249
30
16
19
34
1.94
832105--833457
30
44.3
30
76
8
1030
36
22
14
26
1.92
832753--832878
67
1.9
67
86
0
180
38
23
17
21
1.93
833110--833293
100
1.8
100
85
6
257
38
20
10
30
1.86
849999--850303
21
14.6
21
83
3
366
51
14
26
7
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
851566--851631
2
33.0
2
93
6
116
1
50
0
48
1.10
860900--860956
2
28.5
2
100
0
114
0
49
0
50
1.00
863635--863696
27
2.4
27
91
5
101
61
11
4
22
1.48
865427--865533
21
5.1
21
79
0
115
20
20
27
31
1.97
868787--868820
8
4.4
8
88
3
52
38
26
35
0
1.57
869515--869566
2
26.5
2
96
3
97
50
0
50
0
1.00
870341--870598
36
7.4
34
72
14
136
27
8
18
46
1.78
870561--870636
28
2.7
28
78
8
82
28
7
18
44
1.78
870616--870711
40
2.5
40
83
6
117
28
6
21
43
1.77
872702--872769
2
34.0
2
93
0
118
47
2
50
0
1.16
873774--873808
18
1.9
18
100
0
70
34
11
5
48
1.63
877412--877453
2
21.0
2
100
0
84
0
50
0
50
1.00
879010--879060
2
25.5
2
100
0
102
0
50
0
49
1.00
894705--895104
40
10.0
40
91
1
651
26
26
18
28
1.98
905446--905687
48
5.1
47
91
1
394
37
14
11
36
1.82
905446--905687
95
2.5
96
92
1
416
37
14
11
36
1.82
905601--905675
23
3.2
23
64
14
62
38
13
8
40
1.74
909630--909660
2
15.5
2
100
0
62
48
0
0
51
1.00
919895--919923
14
2.1
14
100
0
58
0
0
10
89
0.48
919897--919921
13
1.9
13
100
0
50
0
0
4
96
0.24
924132--924166
18
1.9
18
88
11
54
45
8
2
42
1.49
928926--928967
2
21.0
2
100
0
84
50
0
50
0
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
932837--932885
23
2.1
23
82
14
57
24
16
16
42
1.87
933820--933873
2
27.0
2
100
0
108
0
50
0
50
1.00
933873--933906
2
17.0
2
100
0
68
50
0
0
50
1.00
936602--936632
16
1.9
16
93
0
53
38
25
3
32
1.72
947685--947713
9
3.2
9
100
0
58
24
13
10
51
1.72
950310--950341
2
16.0
2
100
0
64
50
0
50
0
1.00
969335--969401
2
33.5
2
100
0
134
0
49
0
50
1.00
972173--972209
16
2.4
15
86
8
56
81
2
0
16
0.81
972991--973029
1
39.0
1
86
0
51
0
2
92
2
0.38
976049--976107
30
2.0
30
86
0
82
28
1
50
18
1.56
984199--984239
12
3.4
12
83
10
57
9
0
75
14
1.04
985872--986778
165
5.5
164
83
7
1109
26
23
15
35
1.94
988174--988215
8
5.4
8
82
5
59
35
23
38
2
1.68
988314--988907
166
3.6
166
83
5
684
29
23
14
32
1.94
989016--989059
16
2.9
15
83
9
54
47
25
25
2
1.63
994984--995031
16
3.0
16
93
0
87
47
25
20
6
1.73
995039--995099
31
2.0
31
93
0
104
27
26
21
24
1.99
995997--996058
31
2.0
31
96
0
115
22
24
25
27
2.00
996066--996113
16
3.0
16
100
0
96
6
25
25
43
1.77
1006240--1006277
2
19.0
2
100
0
76
0
50
0
50
1.00
1020201--1020256
26
2.2
25
84
12
69
58
8
3
28
1.45
1020196--1020263
27
2.5
27
79
15
70
60
7
2
29
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1022118--1022161
21
2.1
21
95
0
79
65
9
4
20
1.38
1023579--1023613
18
1.9
18
100
0
70
40
25
22
11
1.88
1023912--1023938
14
1.9
14
100
0
54
25
14
37
22
1.93
1024917--1024978
21
3.0
20
75
15
56
32
16
14
37
1.89
1024951--1025041
39
2.3
40
88
1
130
34
18
12
35
1.88
1025499--1025618
40
3.0
40
75
8
111
35
16
10
38
1.82
1025567--1025634
20
3.4
19
78
11
66
32
16
11
39
1.84
1027344--1027409
20
3.2
20
69
4
51
43
12
4
39
1.62
1027466--1027504
20
1.9
20
85
10
53
30
15
10
43
1.80
1027478--1027578
21
4.9
20
74
12
71
35
11
14
37
1.83
1031608--1032097
168
2.9
167
88
3
734
31
17
19
31
1.95
1031573--1032170
168
3.6
167
84
5
685
31
18
18
31
1.95
1031573--1032286
336
2.1
332
76
9
705
30
17
19
31
1.96
1036538--1036566
2
14.5
2
100
0
58
0
48
0
51
1.00
1036701--1036763
2
31.5
2
100
0
126
0
50
0
49
1.00
1038636--1038680
2
22.5
2
100
0
90
0
0
48
51
1.00
1039723--1039786
10
6.4
10
83
0
65
15
9
50
25
1.74
1039723--1039786
20
3.2
20
81
0
74
15
9
50
25
1.74
1039723--1039779
30
1.9
30
85
0
78
17
8
49
24
1.75
1042454--1042744
89
3.3
89
94
1
512
24
15
29
31
1.95
1043366--1043407
21
2.0
22
85
4
59
50
26
11
11
1.74
1046181--1046227
2
23.5
2
100
0
94
51
0
48
0
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1047895--1047989
35
2.7
35
81
3
111
25
38
11
24
1.89
1057486--1057906
161
2.6
160
91
1
680
36
19
13
30
1.90
1065340--1065368
14
2.1
14
100
0
58
27
6
34
31
1.83
1071884--1071908
11
2.3
11
100
0
50
68
0
12
20
1.21
1073544--1073664
32
3.8
32
86
4
165
9
14
29
45
1.78
1073544--1073664
63
1.9
64
84
5
165
9
14
29
45
1.78
1088555--1089741
25
48.0
25
91
1
1774
22
34
14
27
1.94
1090124--1090160
2
18.0
2
94
5
65
48
0
48
2
1.15
1094558--1094622
2
32.5
2
100
0
130
0
49
0
50
1.00
1097518--1097702
47
3.9
47
96
0
334
33
21
12
32
1.91
1099611--1099648
2
19.0
2
100
0
76
0
50
0
50
1.00
1100345--1100392
4
12.0
4
81
0
60
0
33
25
41
1.55
1100345--1100389
8
5.6
8
94
0
81
0
35
24
40
1.56
1103508--1103779
29
9.4
29
93
0
436
23
10
15
50
1.74
1106184--1108489
25
91.8
25
86
2
2814
24
6
29
38
1.81
1109119--1109245
22
5.8
22
100
0
254
32
18
12
36
1.89
1109230--1109259
14
2.1
14
100
0
60
36
26
6
30
1.82
1115767--1115874
2
54.0
2
94
0
180
0
51
0
47
1.07
1131684--1131763
32
2.5
33
95
2
144
23
21
31
23
1.98
1131779--1131832
19
2.8
19
80
0
72
35
14
24
25
1.94
1133017--1133069
19
2.8
19
82
0
79
24
22
16
35
1.95
1138179--1138203
2
12.5
2
100
0
50
48
0
0
52
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1138431--1138536
27
3.9
27
94
0
185
20
23
13
42
1.87
1143477--1143980
80
6.3
80
89
2
735
23
21
17
37
1.93
1144208--1144245
16
2.4
16
86
0
58
18
15
23
42
1.89
1145420--1145459
2
20.0
2
100
0
80
0
50
0
50
1.00
1150071--1150193
29
4.2
29
100
0
246
43
13
9
33
1.77
1151327--1151772
219
2.0
220
94
0
777
36
15
18
29
1.92
1151832--1152156
165
2.0
162
91
3
526
39
17
17
25
1.91
1153490--1153522
17
1.9
17
100
0
66
30
12
33
24
1.91
1159756--1159802
23
2.0
23
100
0
94
17
17
8
57
1.63
1166929--1166987
21
2.8
21
77
10
66
28
20
32
18
1.96

Tables:   1   2   3   4