Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: scaffold150 Parameters: 2 7 7 80 10 50 500 Length: 1854615

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 642 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
406732--407120
195
2.0
194
100
0
769
33
15
8
42
1.78
407152--407184
2
16.5
2
100
0
66
0
51
0
48
1.00
407433--407471
2
19.5
2
100
0
78
0
51
0
48
1.00
407597--407623
12
2.2
12
100
0
54
0
40
0
59
0.98
407755--407807
2
26.5
2
100
0
106
0
49
0
50
1.00
408766--408804
2
19.5
2
100
0
78
48
0
51
0
1.00
409094--409139
2
23.0
2
90
0
74
52
2
45
0
1.13
409350--410597
47
26.8
46
91
2
1689
14
28
23
34
1.93
409350--410578
92
13.2
93
93
2
1710
14
28
23
34
1.93
414326--414361
2
18.0
2
88
0
54
52
0
44
2
1.15
416052--416086
17
2.1
16
89
5
52
20
37
17
25
1.94
416143--416177
17
2.1
16
89
5
52
25
17
37
20
1.94
416981--417024
16
2.8
16
85
0
70
20
29
13
36
1.91
417102--417279
59
2.9
59
88
7
250
17
20
15
46
1.84
417678--417715
17
2.4
16
86
8
51
39
21
15
23
1.92
418147--418178
13
2.3
15
89
10
50
56
15
9
18
1.66
419374--420039
168
4.0
168
93
0
1118
31
18
18
31
1.95
421187--421414
33
6.8
33
78
10
203
27
21
16
33
1.95
421219--421414
105
1.9
104
88
3
295
27
20
17
33
1.96
421438--421534
34
2.9
33
83
3
122
30
23
11
34
1.90
421432--421535
33
3.1
33
81
2
118
29
24
12
33
1.92
425604--425660
4
14.2
4
88
0
51
1
38
10
49
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
425616--425662
18
2.6
18
86
0
67
2
34
14
48
1.56
425604--425662
10
5.7
10
78
7
55
1
37
11
49
1.50
432619--432655
2
18.5
2
94
0
65
0
54
0
45
1.00
433169--433230
10
5.9
11
73
16
60
25
17
43
12
1.85
433168--433254
20
4.2
20
75
8
77
25
16
44
13
1.84
433261--433342
42
1.9
43
87
2
121
24
18
41
15
1.89
433250--433340
23
4.2
22
72
13
82
25
19
38
16
1.92
438914--438980
34
2.0
34
87
0
98
41
19
10
28
1.84
438948--439549
46
13.7
46
85
10
825
34
20
18
26
1.96
439086--439152
34
2.0
34
100
0
134
40
23
11
23
1.88
438904--439376
258
1.9
252
94
2
829
34
20
17
27
1.95
439390--439456
34
2.0
34
93
0
116
40
20
11
26
1.88
439344--439494
80
1.9
80
95
0
275
35
21
16
26
1.95
439298--439540
126
1.9
126
92
0
405
34
21
17
26
1.96
441803--441877
30
2.5
30
89
4
107
26
20
17
36
1.94
441776--441877
30
3.4
30
78
10
102
23
21
17
37
1.94
442931--443009
31
2.5
31
87
0
104
25
21
24
29
1.99
452456--452536
18
4.3
18
72
14
56
45
38
8
7
1.63
457087--457130
23
1.9
23
90
0
70
34
18
11
36
1.86
465254--465309
20
2.9
19
86
2
76
12
12
26
48
1.77
471134--471177
2
22.0
2
95
0
79
2
50
0
47
1.13
474807--474848
2
21.0
2
100
0
84
0
50
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
474900--474932
2
16.5
2
100
0
66
0
51
0
48
1.00
474812--474987
88
2.0
88
89
0
271
20
25
5
49
1.69
478162--478565
202
2.0
201
99
0
799
37
15
16
30
1.89
497314--497339
2
13.0
2
100
0
52
50
0
50
0
1.00
498438--498506
21
3.3
21
75
4
86
39
27
17
15
1.90
502258--502298
2
20.5
2
94
0
73
0
48
2
48
1.14
502376--502430
2
27.5
2
100
0
110
0
49
0
50
1.00
508076--508113
18
2.1
18
95
0
67
39
0
39
21
1.53
511244--511368
63
2.0
62
82
4
153
46
14
16
23
1.83
518826--518877
2
26.0
2
100
0
104
50
0
50
0
1.00
522194--522366
96
1.8
95
96
1
319
36
10
11
41
1.76
524073--524107
11
3.2
11
83
0
52
37
5
8
48
1.58
525519--525584
3
22.0
3
76
11
64
33
4
0
62
1.16
525521--525559
20
1.9
20
90
10
62
33
5
0
61
1.18
525519--525584
23
2.7
23
86
6
87
33
4
0
62
1.16
535800--535829
8
3.6
8
91
8
51
0
0
10
90
0.47
535800--535830
9
3.6
9
95
4
55
0
0
9
90
0.46
544986--545013
1
28.0
1
100
0
56
0
0
0
100
0.00
560613--560885
21
13.0
21
79
3
235
34
21
18
25
1.96
561772--561842
21
3.4
21
72
14
65
22
18
19
39
1.92
561773--561953
83
2.2
84
81
5
213
21
16
21
40
1.91
561783--561953
21
8.2
21
75
10
118
22
16
21
39
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
561777--561945
42
4.1
42
74
5
130
22
15
20
40
1.90
573801--574013
97
2.2
98
87
1
302
19
25
19
35
1.95
575722--575753
2
16.0
2
100
0
64
50
50
0
0
1.00
580404--580434
16
1.9
16
93
0
53
58
12
19
9
1.62
580418--580532
52
2.1
54
88
7
171
45
10
20
23
1.82
586745--586785
13
3.0
14
92
7
75
58
12
7
21
1.58
590536--590569
15
2.3
15
90
10
52
0
32
26
41
1.56
592571--593034
160
2.9
160
90
1
680
30
12
19
36
1.90
598194--598336
51
2.8
50
84
4
189
35
9
19
34
1.85
601265--601315
25
2.0
25
85
7
68
41
23
5
29
1.78
602901--603270
54
7.0
54
84
5
486
31
20
20
28
1.97
602901--603263
105
3.4
105
90
3
559
30
20
20
28
1.97
602901--603270
159
2.3
159
84
5
491
31
20
20
28
1.97
610580--611607
28
35.8
28
69
12
408
28
13
25
32
1.94
610580--611607
56
18.4
55
70
11
452
28
13
25
32
1.94
610920--610950
14
2.2
14
94
0
53
22
16
25
35
1.94
610895--610976
42
2.0
42
90
0
128
26
14
29
29
1.95
610836--611132
97
3.0
98
88
2
420
28
14
26
30
1.95
610962--611092
69
1.9
70
93
1
228
28
15
25
31
1.95
610990--611073
42
2.0
41
86
2
114
26
15
27
30
1.96
611565--611730
42
4.0
42
90
0
251
23
14
27
34
1.94
611590--611663
28
2.6
28
64
29
66
22
13
27
36
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
611536--611870
112
3.0
111
81
6
424
24
14
27
34
1.94
611646--611900
70
3.6
70
92
0
420
23
14
27
34
1.94
611688--611761
28
2.6
28
89
0
112
25
14
25
33
1.94
611716--611803
42
2.1
42
93
0
149
23
14
27
34
1.94
611758--611831
28
2.6
28
93
0
121
22
13
27
36
1.92
611735--611859
42
3.0
43
82
11
127
24
13
28
34
1.93
611828--612041
28
7.6
28
81
4
261
23
13
24
38
1.91
611786--611870
42
2.0
42
95
0
152
23
14
27
35
1.93
623741--624399
43
15.3
43
89
0
933
29
22
17
30
1.96
626486--626525
12
3.3
12
89
6
55
55
2
42
0
1.13
626492--626529
2
18.5
2
89
5
58
52
2
44
0
1.14
655025--655074
25
2.0
25
92
0
82
32
12
22
34
1.90
657004--657061
18
3.2
18
92
0
98
43
15
17
24
1.87
657893--657997
54
1.9
54
90
3
167
39
8
8
43
1.66
663790--663906
59
2.0
59
96
0
216
43
16
16
23
1.87
666429--666467
16
2.4
16
86
0
51
35
48
7
7
1.61
668186--668227
21
2.0
22
85
4
59
26
16
23
33
1.96
672647--672708
32
1.9
32
100
0
124
27
19
9
43
1.82
682822--682894
34
2.1
34
89
0
110
57
13
6
21
1.60
683854--683902
14
3.5
14
74
0
53
0
55
2
42
1.11
683864--683915
18
2.8
18
85
2
68
0
50
1
48
1.12
692034--692064
2
15.5
2
100
0
62
0
48
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
693370--693527
78
2.0
80
92
2
266
32
15
14
36
1.88
697603--697634
13
2.4
14
94
5
57
3
0
6
90
0.53
739568--739678
8
15.6
7
72
19
54
30
16
44
9
1.78
739575--739673
22
4.6
21
77
14
78
29
16
45
9
1.78
739627--739673
21
2.3
20
92
3
76
29
19
44
6
1.75
739635--739686
27
2.0
26
85
11
70
28
19
44
7
1.78
740408--740469
22
2.8
22
82
0
61
30
14
41
12
1.83
748110--748249
28
5.0
28
99
0
271
49
10
15
25
1.76
748997--749045
23
2.3
23
82
10
59
42
6
8
42
1.59
752215--752272
21
2.8
21
86
0
89
37
17
22
22
1.93

Tables:   1   2   3   4   5   6