Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: scaffold313 Parameters: 2 7 7 80 10 50 500 Length: 1192932

Tables:   1   2   3   

This is table  2  of  3  ( 315 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
483852--483914
31
2.0
31
100
0
126
39
9
19
31
1.83
489966--490084
29
4.1
29
96
0
220
33
7
31
26
1.85
524291--524329
17
2.2
19
86
9
55
28
17
20
33
1.96
527443--528117
139
4.8
139
93
1
1111
31
10
15
42
1.81
527302--528117
278
3.0
276
92
4
1307
31
10
15
42
1.80
527302--528110
417
2.0
407
90
4
1275
32
10
15
42
1.80
532946--533148
54
3.8
54
93
0
343
43
19
21
16
1.88
534401--534608
104
2.0
104
98
0
398
39
8
22
29
1.84
547308--547512
102
2.0
101
98
1
401
44
16
17
20
1.86
567713--567758
23
2.0
23
100
0
92
43
0
13
43
1.43
573442--573481
11
3.7
11
80
6
55
42
7
22
27
1.80
573515--573555
11
3.7
11
80
0
55
41
9
26
21
1.84
573515--573567
22
2.4
22
87
0
79
41
11
26
20
1.86
573621--573674
11
4.9
11
95
0
90
27
31
9
31
1.88
574821--575044
112
2.0
112
93
1
387
28
19
18
33
1.95
575258--575308
2
25.5
2
100
0
102
50
0
49
0
1.00
581616--581667
18
2.8
18
78
21
54
55
11
9
23
1.64
582735--582892
51
3.0
52
87
3
237
14
24
17
43
1.87
582838--583010
64
2.6
64
86
6
213
17
19
15
47
1.82
585001--585043
2
21.5
2
100
0
86
48
0
51
0
1.00
592919--593012
46
2.0
46
100
0
188
41
12
12
32
1.81
595764--596199
146
3.0
146
97
0
811
31
19
21
27
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
619507--619545
2
19.5
2
89
0
60
0
2
46
51
1.14
626009--626047
2
19.5
2
100
0
78
0
51
0
48
1.00
626868--626954
20
4.2
20
76
8
86
24
14
44
16
1.85
626880--627006
50
2.4
52
78
12
145
25
16
44
14
1.85
626950--627035
23
3.9
23
71
11
81
25
18
40
15
1.89
629872--630036
30
5.5
30
83
5
181
27
29
21
21
1.98
629872--630045
60
2.9
60
84
0
213
27
29
21
21
1.99
629881--630059
90
2.0
90
82
0
214
28
28
21
21
1.99
633792--633835
22
2.0
23
86
4
63
59
15
13
11
1.62
643396--643884
167
2.9
167
90
1
746
30
19
17
32
1.95
643396--643957
168
3.4
167
87
2
752
31
19
17
32
1.95
652474--652509
16
2.4
15
90
9
56
44
2
0
52
1.15
655970--656416
220
2.0
220
94
0
779
40
14
11
33
1.83
659323--659371
24
2.0
24
100
0
98
32
24
42
0
1.55
659332--659371
4
10.0
4
94
0
62
30
25
45
0
1.54
660083--660116
4
8.8
4
87
6
52
0
44
26
29
1.55
660089--660123
12
2.9
12
91
0
52
0
40
25
34
1.56
662056--662097
12
3.6
12
87
3
59
0
35
26
38
1.57
662059--662094
16
2.2
16
100
0
72
0
38
25
36
1.56
664465--664507
2
21.5
2
100
0
86
0
48
0
51
1.00
664837--664925
21
4.1
21
78
8
97
38
13
17
30
1.89
664838--664952
21
4.9
24
75
18
84
36
13
17
33
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
665392--665523
21
6.2
21
73
6
77
31
15
15
37
1.90
667345--667658
47
6.9
47
89
7
479
26
20
24
29
1.99
667432--667506
37
2.0
37
97
0
141
29
21
20
29
1.98
667345--667658
131
2.3
135
89
6
476
26
20
24
29
1.99
668284--668530
59
4.2
59
92
1
399
34
17
17
30
1.93
669305--669525
62
3.6
62
94
0
370
22
25
10
41
1.86
671201--672032
77
10.9
77
95
2
1527
16
17
36
29
1.92
671201--672032
227
3.6
230
95
2
1507
16
17
36
29
1.92
671202--672032
304
2.7
304
98
0
1599
16
17
36
29
1.92
672500--672611
46
2.4
46
92
0
179
38
18
8
33
1.82
679904--680548
36
17.9
36
89
4
888
48
25
9
16
1.77
679900--679994
30
3.0
30
84
9
109
49
20
10
20
1.77
680421--680509
16
5.1
16
65
19
52
50
30
5
13
1.64
684080--684499
47
9.2
47
94
2
691
45
21
12
21
1.84
684080--684499
92
4.6
93
95
2
687
45
21
12
21
1.84
689336--689375
22
1.9
20
85
10
53
7
10
25
57
1.57
695662--695901
46
5.0
46
81
7
300
32
15
21
30
1.94
695662--695901
96
2.5
96
97
0
444
32
15
21
30
1.94
695918--695974
17
3.4
17
80
0
60
43
5
21
29
1.74
696384--696445
17
3.8
16
81
8
63
45
8
20
25
1.79
696433--696565
26
5.1
26
96
0
239
43
7
14
34
1.73
709807--709851
2
22.5
2
100
0
90
48
0
51
0
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
712695--712948
42
6.0
42
99
0
499
28
18
19
33
1.95
716060--716194
23
5.4
23
73
14
99
29
35
8
25
1.87
722448--722485
4
9.5
4
94
0
67
0
47
23
28
1.52
741706--741802
18
5.4
18
96
0
176
35
5
28
30
1.79
750804--750851
2
24.0
2
100
0
96
50
0
50
0
1.00
752859--752945
40
2.2
40
89
0
129
35
11
26
26
1.90
754182--754211
9
3.3
9
95
0
51
23
26
33
16
1.96
760476--760516
19
2.2
19
100
0
82
17
17
19
46
1.85
762072--762417
26
13.4
26
87
5
461
41
0
36
21
1.56
762072--762570
52
9.9
52
84
8
615
41
0
36
21
1.55
762072--762570
78
6.6
75
84
8
572
41
0
36
21
1.55
762398--762433
16
2.2
16
95
0
63
44
0
38
16
1.48
762294--762533
120
2.0
120
94
0
417
39
0
38
21
1.57
762372--762457
42
2.0
42
95
0
154
41
0
39
18
1.51
762414--762570
26
6.2
26
88
4
221
40
0
36
22
1.55
765038--765152
43
2.7
43
90
0
185
44
5
16
33
1.70
765637--766032
161
2.5
161
89
0
603
32
13
18
35
1.90
769208--769455
41
6.0
41
90
1
406
39
5
14
39
1.70
769213--769455
125
1.9
125
93
1
416
39
5
14
39
1.69
780709--780764
26
2.2
26
81
12
62
73
16
7
3
1.20
780858--780905
16
3.0
16
78
0
51
75
22
2
0
0.91
786778--786832
2
27.5
2
100
0
110
50
0
49
0
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
788905--788989
43
2.0
43
92
0
143
30
11
20
37
1.88
796027--796197
57
3.0
57
91
0
288
30
14
19
34
1.92
826220--826361
70
2.0
70
98
0
275
30
12
11
45
1.77
826597--826688
45
2.0
45
89
4
141
34
15
9
40
1.80
826597--826699
45
2.3
45
84
3
127
33
13
10
42
1.79
835728--835840
32
3.6
31
82
9
142
42
11
11
34
1.77
835749--835860
29
3.7
28
76
16
109
42
13
9
33
1.77
835728--835860
32
4.3
32
80
12
136
42
12
11
33
1.79
844942--845002
2
30.5
2
89
0
95
54
1
44
0
1.10
845526--845701
60
2.9
61
83
6
178
18
19
15
46
1.85
859558--859738
92
2.0
92
98
0
353
29
9
19
41
1.83
868197--868247
2
25.5
2
100
0
102
0
49
0
50
1.00
868771--868824
20
2.8
19
82
2
72
20
12
24
42
1.87
870092--870550
166
2.8
159
79
7
422
28
22
13
34
1.93
870892--870932
16
2.6
16
88
3
57
36
21
39
2
1.67
872308--872349
21
2.0
21
90
0
66
38
11
16
33
1.86
873715--874082
164
2.2
162
78
6
373
34
13
22
28
1.93
879498--879962
170
2.7
168
88
3
648
30
19
19
30
1.96
879499--880067
170
3.4
167
83
5
490
29
20
19
30
1.97
887156--888142
414
2.4
410
83
5
1238
35
17
19
28
1.94
887156--888248
418
2.6
412
80
8
1241
35
17
19
27
1.94
891352--891376
10
2.5
10
100
0
50
28
32
12
28
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
906830--906948
60
2.0
60
83
6
152
45
16
23
14
1.84
910423--910481
21
2.9
20
73
16
66
37
16
11
33
1.86
910651--910690
20
1.9
22
85
10
57
25
17
15
42
1.88
912978--913013
17
2.1
17
100
0
72
36
25
38
0
1.56
915342--915400
21
2.9
20
73
16
66
37
16
11
33
1.86
917659--917827
37
4.8
36
78
14
183
22
21
17
39
1.93
917700--917746
14
3.4
14
96
0
85
27
19
23
29
1.98
917663--917820
51
3.1
51
69
10
151
22
20
18
37
1.94
924006--924081
21
3.6
21
77
8
66
34
7
11
46
1.70
924277--924703
21
20.9
20
79
10
386
23
5
25
45
1.73

Tables:   1   2   3