oyster.v9_M.fa.s30.2.7.7.80.10.50.500.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold313
Parameters: 2 7 7 80 10 50 500
Length:  1192932

Tables:   1   2   3   

This is table  3  of  3  ( 315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
924277--924703	42	10.4	41	80	9	435	23	5	25	45	1.73
924277--924717	63	7.2	62	82	6	479	23	4	26	45	1.73
925253--925302	20	2.5	21	77	6	59	34	14	16	36	1.88
926274--926427	60	2.5	63	82	8	199	44	25	4	25	1.73
926274--926427	21	7.5	21	83	4	197	44	25	4	25	1.73
936837--936888	2	26.0	2	100	0	104	0	50	0	50	1.00
944957--945015	2	29.5	2	100	0	118	0	50	0	49	1.00
947556--947617	2	31.0	2	100	0	124	0	50	0	50	1.00
959656--960040	193	2.0	191	97	1	734	23	20	24	31	1.98
960902--960943	2	21.0	2	100	0	84	0	50	0	50	1.00
962247--962290	22	2.0	22	95	0	79	25	22	4	47	1.70
964603--964652	2	25.0	2	100	0	100	50	0	50	0	1.00
965262--965293	2	16.0	2	100	0	64	50	0	50	0	1.00
965662--965742	2	40.5	2	100	0	162	0	49	0	50	1.00
980131--980173	1	43.0	1	83	0	50	90	4	0	4	0.54
980130--980170	13	2.9	14	92	7	66	87	7	0	4	0.65
980131--980171	14	2.9	14	88	3	64	90	4	0	4	0.56
981556--981606	2	25.5	2	100	0	102	49	0	50	0	1.00
984368--984412	24	1.9	24	86	4	65	55	2	40	2	1.24
984461--984501	21	2.0	21	85	0	55	58	4	36	0	1.20
986435--986475	4	10.2	4	94	0	73	24	21	0	53	1.46
987244--987296	26	2.0	26	85	7	72	28	5	26	39	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
987254--987310	25	2.3	25	80	11	64	33	5	19	42	1.74
990326--990646	160	2.0	160	100	0	642	36	14	18	30	1.91
1001215--1001298	36	2.6	31	73	21	73	29	22	22	25	1.99
1008222--1008263	12	3.5	12	90	0	66	38	26	35	0	1.57
1008225--1008271	12	3.3	15	86	13	64	40	25	34	0	1.56
1008225--1008271	4	12.0	4	84	4	51	40	25	34	0	1.56
1015568--1015613	21	2.2	21	92	0	74	39	10	17	32	1.84
1015576--1015637	21	3.0	21	90	0	88	35	6	16	41	1.74
1018041--1018093	2	26.5	2	100	0	106	50	49	0	0	1.00
1023980--1024611	336	1.9	335	99	0	1246	34	21	15	28	1.94
1025299--1025352	10	5.4	10	86	0	72	25	51	7	14	1.68
1025299--1025361	20	3.1	20	90	0	90	28	50	6	14	1.67
1029443--1029485	11	3.9	11	75	0	50	6	18	27	46	1.75
1031704--1031877	81	2.1	81	94	0	303	35	13	10	40	1.79
1033273--1033306	13	2.6	13	90	0	50	50	0	5	44	1.26
1037411--1037621	21	10.2	20	82	9	237	27	10	23	37	1.88
1037412--1037611	62	3.2	61	90	5	296	27	11	24	37	1.89
1037410--1037611	82	2.5	82	93	2	334	27	10	24	37	1.89
1037573--1037611	20	2.1	18	86	13	53	28	10	25	35	1.89
1043994--1044156	54	3.0	54	90	1	247	41	20	9	29	1.83
1044621--1044708	46	2.0	44	86	8	124	40	20	7	30	1.81
1045669--1045756	46	2.0	44	86	8	124	40	20	7	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1050358--1050398	2	20.5	2	100	0	82	0	51	0	48	1.00
1054690--1054719	2	15.0	2	100	0	60	50	0	50	0	1.00
1055228--1055259	2	16.0	2	100	0	64	0	50	0	50	1.00
1055959--1056028	2	35.0	2	94	0	104	0	52	1	45	1.09
1059218--1059250	2	16.5	2	100	0	66	51	0	48	0	1.00
1064205--1064239	17	2.1	17	88	0	52	22	17	17	42	1.88
1072740--1072866	62	2.0	62	95	0	227	38	15	22	23	1.92
1074202--1074262	2	30.5	2	100	0	122	49	0	50	0	1.00
1084713--1084746	16	2.1	17	88	5	52	20	0	2	76	0.92
1086122--1086166	2	22.5	2	100	0	90	51	0	48	0	1.00
1086166--1086243	39	2.0	40	87	2	113	62	14	6	16	1.50
1100324--1100348	2	12.5	2	100	0	50	0	0	52	48	1.00
1102369--1102421	2	26.5	2	100	0	106	0	49	0	50	1.00
1102771--1102820	2	25.0	2	100	0	100	0	50	0	50	1.00
1105639--1105680	20	2.0	21	90	4	68	23	9	9	57	1.60
1111041--1111113	24	3.0	24	85	0	83	39	10	17	31	1.85
1113441--1113644	78	2.7	74	88	8	306	39	11	13	35	1.81
1115559--1115608	2	25.0	2	100	0	100	0	50	0	50	1.00
1116307--1116350	2	22.0	2	100	0	88	50	0	50	0	1.00
1118242--1118272	15	2.1	15	93	0	53	38	22	0	38	1.54
1126120--1126199	15	5.3	15	92	0	115	57	12	27	2	1.48
1127123--1127334	30	7.1	30	90	0	316	41	25	22	10	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1129406--1129473	26	2.6	25	83	4	82	26	13	23	36	1.92
1133436--1133466	15	2.1	15	93	0	53	32	12	16	38	1.86
1159080--1159121	3	14.0	3	94	0	75	35	0	30	33	1.58
1167844--1167994	25	6.0	25	98	0	293	24	15	19	39	1.91
1178129--1178153	13	1.9	13	100	0	50	20	24	16	40	1.91
1182520--1182564	14	3.2	14	93	0	72	4	48	0	46	1.22
1183839--1183909	33	2.2	33	84	0	88	18	26	16	38	1.92
1189908--1190418	253	2.0	253	99	0	1013	37	20	10	31	1.87
1192042--1192208	80	2.1	80	96	0	307	29	15	19	35	1.93

Tables:   1   2   3

The End!