oyster.v9_M.fa.s31.2.7.7.80.10.50.500.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold145
Parameters: 2 7 7 80 10 50 500
Length:  1177157

Tables:   1   2   3   

This is table  3  of  3  ( 335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
749827--749902	32	2.4	32	93	0	134	0	36	11	51	1.39
749905--749957	15	3.9	14	76	14	65	84	15	0	0	0.61
756527--756570	2	22.0	2	90	0	70	0	45	0	54	0.99
756529--756569	14	2.9	14	100	0	82	0	43	0	56	0.99
757588--757616	15	1.9	15	100	0	58	72	0	0	27	0.85
759244--759298	2	27.5	2	100	0	110	49	0	50	0	1.00
759921--759963	20	2.2	20	84	12	54	48	16	6	27	1.71
764277--764335	21	2.6	23	76	12	68	72	20	0	6	1.06
764271--764335	24	2.7	24	74	11	62	70	21	1	6	1.17
764277--764337	23	3.0	20	74	25	56	72	19	0	8	1.10
764382--764410	14	2.1	14	100	0	58	93	0	0	6	0.36
765025--765062	20	1.9	20	84	5	51	65	10	5	18	1.41
771844--771892	2	24.5	2	100	0	98	0	51	0	48	1.00
796381--796428	24	2.0	23	84	11	62	39	10	14	35	1.80
798236--798280	21	2.1	21	83	0	54	55	22	8	13	1.65
798241--798524	21	13.5	21	88	4	394	47	25	10	16	1.78
805191--805266	25	3.0	25	83	7	100	14	9	23	52	1.70
809657--809704	24	2.1	23	85	11	64	39	12	4	43	1.62
809667--809717	24	2.1	24	85	0	66	41	17	5	35	1.74
810845--810890	2	23.0	2	100	0	92	50	0	50	0	1.00
821497--821524	14	2.0	14	100	0	56	57	14	7	21	1.61
828943--829073	65	2.0	65	100	0	262	25	17	24	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
830944--830977	17	2.0	17	88	0	50	32	14	29	23	1.94
831160--831430	77	3.5	77	86	2	357	33	24	19	23	1.97
832153--832229	33	2.4	33	93	2	138	32	25	15	25	1.96
842807--842858	25	2.1	25	85	0	68	34	3	28	32	1.76
845652--845698	4	11.8	4	86	0	67	48	19	29	2	1.60
856774--857673	47	19.1	47	98	0	1710	19	12	23	44	1.85
858411--858674	63	4.2	63	99	0	510	26	10	26	37	1.88
869738--869773	19	1.9	18	88	5	54	30	5	25	38	1.78
869738--869781	18	2.4	19	84	3	54	31	6	22	38	1.81
870241--871034	31	25.6	31	97	0	1408	39	25	15	18	1.90
896428--896458	14	2.2	14	94	0	53	32	12	22	32	1.92
898296--898326	2	15.5	2	100	0	62	48	0	51	0	1.00
898660--898690	2	15.5	2	100	0	62	0	48	0	51	1.00
922295--922331	18	2.1	18	100	0	74	37	10	16	35	1.83
922945--922996	23	2.3	23	86	0	77	46	5	5	42	1.51
923672--923743	2	35.0	2	81	5	81	47	8	0	44	1.33
927915--928023	32	3.5	31	70	7	94	40	16	13	29	1.87
928197--929179	436	2.3	433	87	3	1348	31	17	15	35	1.91
930174--931099	437	2.1	436	84	2	1214	32	18	14	34	1.92
932055--932938	433	2.0	435	84	4	1153	31	17	14	35	1.91
934637--934668	16	2.0	16	100	0	64	43	25	31	0	1.55
939328--939357	1	30.0	1	93	0	51	96	3	0	0	0.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
942204--942237	17	2.0	17	100	0	68	47	17	35	0	1.48
943754--943806	12	4.4	12	90	0	88	1	35	15	47	1.56
945280--945319	13	3.1	13	92	0	71	37	7	32	22	1.82
947803--947838	18	2.0	18	100	0	72	38	16	11	33	1.84
951026--951088	20	3.1	20	79	0	54	38	7	9	44	1.66
951255--951295	20	2.0	20	86	9	57	39	12	4	43	1.63
951534--951962	145	3.0	143	81	7	478	29	17	22	31	1.97
954827--954887	29	2.1	29	100	0	122	31	9	29	29	1.89
956356--956823	162	2.8	161	78	8	521	33	17	24	24	1.97
958317--958825	152	3.3	153	84	8	622	38	15	17	28	1.91
958522--958825	164	1.9	162	86	6	443	38	15	17	28	1.90
961397--961434	18	2.1	18	95	0	67	50	0	28	21	1.49
969502--969534	2	17.5	2	87	12	52	48	0	51	0	1.00
969502--969534	11	2.9	12	86	13	52	48	0	51	0	1.00
969502--969534	15	2.2	15	100	0	66	48	0	51	0	1.00
971463--972088	57	11.0	57	87	3	906	31	25	22	19	1.98
978219--978250	16	2.0	16	100	0	64	31	31	18	18	1.95
981352--981381	1	30.0	1	100	0	60	0	0	100	0	0.00
986860--986889	15	2.1	15	93	6	53	26	6	13	53	1.64
995543--995593	2	25.5	2	100	0	102	50	0	49	0	1.00
1000889--1000913	2	12.5	2	100	0	50	0	52	0	48	1.00
1002256--1002292	18	2.0	19	85	15	51	2	0	16	81	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1010778--1010803	12	2.2	12	100	0	52	46	11	7	34	1.69
1015013--1015056	20	2.2	20	88	8	63	11	34	2	52	1.50
1029214--1029248	18	1.9	18	94	0	61	57	31	11	0	1.34
1030651--1030730	18	4.4	18	74	0	70	51	32	12	3	1.57
1047771--1047797	11	2.5	11	100	0	54	33	11	18	37	1.86
1057877--1057925	13	3.8	13	81	10	64	0	4	14	81	0.83
1057880--1057936	26	2.2	27	84	9	82	0	3	17	78	0.88
1067948--1067987	16	2.5	16	87	0	53	2	40	27	30	1.70
1073105--1073137	17	1.9	17	100	0	66	30	24	21	24	1.99
1084541--1084700	46	3.5	46	97	0	302	30	27	10	31	1.90
1086558--1086806	59	4.0	59	77	16	286	23	24	21	30	1.99
1086508--1086971	131	3.4	131	89	5	651	23	24	21	30	1.99
1086748--1086971	72	3.1	72	92	0	376	24	23	21	30	1.99
1095230--1095277	22	2.1	23	84	7	62	12	8	16	62	1.53
1105004--1105035	2	16.0	2	100	0	64	50	0	50	0	1.00
1116828--1116890	11	5.8	11	81	3	83	11	15	26	46	1.80
1119334--1119414	27	3.0	27	85	8	110	48	19	4	27	1.69
1124739--1124811	18	4.1	18	92	3	112	32	0	21	45	1.53
1125101--1125202	18	5.7	18	74	11	84	36	1	23	38	1.66
1127363--1127406	2	22.0	2	100	0	88	0	50	0	50	1.00
1128829--1128925	24	4.0	24	100	0	194	45	20	8	25	1.79
1130302--1130353	2	26.5	2	96	3	97	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1141577--1141633	22	2.7	20	72	20	53	14	14	22	49	1.79
1144251--1144376	63	2.0	63	100	0	252	38	11	9	41	1.73
1150006--1150250	27	9.1	27	94	0	400	35	21	26	16	1.94
1150406--1150470	32	2.0	32	85	5	87	33	15	13	36	1.87
1158491--1158567	20	3.7	20	79	6	82	16	19	22	41	1.90
1159803--1159844	8	5.4	8	88	5	68	0	38	26	35	1.57
1159804--1159841	4	9.8	4	82	5	51	0	42	26	31	1.56

Tables:   1   2   3

The End!