Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: scaffold156 Parameters: 2 7 7 80 10 50 500 Length: 1175753

Tables:   1   2   3   

This is table  3  of  3  ( 333 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
889493--889517
13
1.9
13
100
0
50
44
8
0
48
1.32
896019--896063
2
22.5
2
90
0
72
46
0
51
2
1.13
896187--896587
200
2.0
200
100
0
802
31
22
10
34
1.89
909161--909195
15
2.3
15
90
0
52
28
37
25
8
1.85
913097--913136
19
2.1
19
86
9
55
42
15
2
40
1.60
915604--915792
83
2.3
83
95
0
333
34
17
24
23
1.96
915960--916019
16
3.8
16
93
0
93
8
23
50
18
1.74
917219--917251
15
2.2
15
100
0
66
36
0
21
42
1.53
919925--919966
2
21.0
2
100
0
84
50
0
50
0
1.00
920488--920529
21
2.0
22
85
4
59
16
21
23
38
1.93
920956--921003
2
24.0
2
100
0
96
50
0
50
0
1.00
923261--923297
18
2.1
18
89
0
56
10
54
2
32
1.49
924803--925255
172
2.6
172
96
0
843
35
15
19
29
1.93
925486--925724
27
8.9
27
73
3
203
23
38
9
28
1.85
925510--925724
81
2.6
80
82
5
263
23
39
8
28
1.85
928229--928430
62
3.3
62
92
1
316
18
18
22
40
1.91
928222--928426
93
2.2
93
86
5
306
17
19
22
40
1.91
928229--928406
31
5.7
31
95
0
311
19
16
22
41
1.90
930819--930849
15
2.1
15
100
0
62
25
19
35
19
1.95
937706--937741
2
18.0
2
88
0
54
0
55
0
44
0.99
937706--937741
14
2.6
14
100
0
72
0
55
0
44
0.99
941652--941686
2
17.5
2
100
0
70
0
48
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
943537--943742
56
3.6
56
80
5
216
31
13
15
40
1.85
949649--949690
2
21.0
2
90
0
66
0
45
0
54
0.99
957402--957544
20
7.3
19
68
11
83
9
22
24
43
1.83
962652--962686
18
2.0
17
94
5
61
48
17
0
34
1.47
979879--979926
2
24.0
2
91
0
78
54
0
45
0
0.99
984011--984038
2
14.0
2
100
0
56
50
0
0
50
1.00
996003--996037
15
2.3
15
90
0
52
34
0
20
45
1.51
1000547--1000573
10
2.7
10
100
0
54
11
18
7
62
1.50
1009193--1009227
9
3.9
9
84
0
52
0
22
37
40
1.55
1014335--1015320
437
2.3
436
87
3
1421
34
16
17
31
1.92
1015793--1015856
2
32.0
2
100
0
128
50
0
50
0
1.00
1020383--1020790
132
3.0
134
80
5
482
28
23
21
27
1.99
1020389--1020800
138
3.1
134
78
5
454
28
22
21
27
1.99
1029548--1029576
13
2.2
13
100
0
58
62
0
6
31
1.22
1030164--1030212
26
1.9
26
87
4
73
42
12
16
28
1.84
1032193--1032233
17
2.4
18
80
15
52
39
12
9
39
1.76
1032968--1033016
17
2.8
18
79
17
66
46
2
10
40
1.49
1033617--1033667
18
2.7
19
71
17
61
23
25
11
39
1.89
1039485--1039547
33
1.9
33
96
0
117
20
20
19
39
1.92
1039600--1039666
2
33.5
2
100
0
134
50
0
49
0
1.00
1042559--1042600
2
21.0
2
100
0
84
50
0
50
0
1.00
1043249--1043332
39
2.2
39
84
4
116
44
10
15
29
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1045308--1045338
11
2.8
11
90
0
53
45
29
16
9
1.79
1050741--1051003
22
12.2
20
76
9
148
34
14
14
36
1.87
1050766--1050994
22
10.5
22
83
2
284
32
14
14
38
1.86
1050739--1050995
43
5.9
42
79
7
230
33
14
14
37
1.86
1050766--1051003
65
3.7
65
88
0
350
33
14
14
38
1.86
1050805--1050994
87
2.2
87
90
1
292
31
14
14
40
1.86
1051633--1051710
22
3.5
22
66
13
59
38
15
10
35
1.81
1051626--1051731
46
2.3
46
84
9
130
33
15
9
42
1.79
1051713--1051758
21
2.2
21
92
0
74
26
17
13
43
1.85
1055778--1056177
163
2.4
165
82
5
470
37
18
15
29
1.91
1056479--1056503
13
1.9
13
100
0
50
36
24
8
32
1.84
1062181--1062294
12
9.6
12
72
18
71
77
16
2
3
1.03
1062189--1062291
8
12.2
8
71
18
59
77
15
2
3
1.03
1062180--1062219
4
10.2
4
83
5
55
75
25
0
0
0.81
1062235--1062282
13
3.5
14
80
11
55
85
12
2
0
0.69
1062237--1062282
15
2.9
16
90
6
67
84
13
2
0
0.71
1062235--1062294
26
2.4
25
85
2
75
83
13
3
0
0.77
1067519--1067577
2
29.5
2
100
0
118
50
0
49
0
1.00
1073292--1073333
2
21.0
2
90
0
66
54
0
0
45
0.99
1080557--1080634
4
17.8
4
81
12
59
71
21
3
2
1.14
1080583--1080635
5
11.2
5
86
8
58
73
20
5
0
1.03
1080556--1080635
10
8.4
9
74
17
65
72
21
3
2
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1080557--1080634
13
5.5
13
73
20
68
71
21
3
2
1.14
1080669--1080694
1
26.0
1
100
0
52
0
100
0
0
0.00
1091691--1091734
12
3.7
12
81
6
54
31
2
0
65
1.05
1098560--1098642
37
2.2
37
95
0
148
26
28
9
34
1.88
1112150--1112193
2
22.0
2
100
0
88
0
50
0
50
1.00
1114617--1114656
15
2.6
14
85
14
53
85
12
2
0
0.71
1114629--1114658
8
3.9
8
95
4
53
86
13
0
0
0.57
1115186--1115210
11
2.3
11
100
0
50
48
20
16
16
1.82
1115614--1115661
5
10.4
5
95
4
68
0
0
14
85
0.60
1115997--1116037
2
20.5
2
100
0
82
0
51
0
48
1.00
1116644--1116706
2
31.5
2
96
0
117
47
0
50
1
1.10
1130116--1130232
57
2.1
56
96
1
216
17
18
15
48
1.81
1130844--1130908
31
2.1
30
83
8
78
27
12
15
44
1.82
1131611--1131689
32
2.5
32
85
2
97
27
10
17
44
1.81
1131643--1131707
31
2.1
30
83
8
78
27
12
16
43
1.84
1132414--1132492
32
2.5
32
85
2
97
27
10
17
44
1.81
1132446--1132510
31
2.1
30
83
8
78
26
12
16
44
1.83
1134419--1135159
340
2.2
333
80
6
843
26
25
14
33
1.94
1138075--1138495
170
2.5
168
78
8
430
33
15
22
28
1.94
1139288--1139330
18
2.5
17
80
3
50
62
11
13
11
1.54
1150403--1150850
171
2.7
167
85
6
577
27
20
16
35
1.94
1156901--1156931
15
2.0
15
93
6
53
77
0
3
19
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1156908--1156942
11
3.1
11
91
4
52
74
2
5
17
1.14
1161911--1162003
17
5.4
17
81
13
100
83
15
0
1
0.69
1161911--1162003
24
4.0
24
75
13
95
83
15
0
1
0.69
1161911--1161976
1
66.0
1
75
0
60
87
10
0
1
0.60
1161915--1162003
9
9.9
9
81
11
67
83
15
0
1
0.71

Tables:   1   2   3   

The End!