Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold100
Parameters: 2 7 7 80 10 50 500
Length:  1174989

Tables:   1   2   3   4   

This is table  4  of  4  ( 392 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1081310--1081540
21
10.9
21
80
10
265
32
16
12
38
1.87
1081376--1081474
22
4.6
23
74
12
77
37
15
13
34
1.86
1081316--1081562
85
2.9
85
82
8
261
33
16
12
37
1.86
1081310--1081519
64
3.3
64
95
2
361
31
16
12
38
1.87
1083294--1083341
21
2.4
20
86
13
64
8
14
29
47
1.73
1083813--1083886
2
37.0
2
100
0
148
50
0
50
0
1.00
1086273--1086336
33
1.9
33
87
0
92
53
17
4
25
1.63
1097853--1098110
127
2.0
127
98
0
498
24
16
16
43
1.87
1105267--1105315
2
25.0
2
95
4
91
0
48
0
51
1.00
1114892--1115179
140
2.0
145
88
4
433
37
11
16
34
1.85
1115214--1115257
18
2.4
18
96
3
79
63
0
15
20
1.31
1117860--1117923
2
32.0
2
100
0
128
50
0
50
0
1.00
1118462--1118515
2
27.0
2
100
0
108
0
50
0
50
1.00
1121456--1121489
8
4.4
8
88
7
52
32
0
0
67
0.91
1125091--1125130
19
2.0
20
85
4
55
37
12
0
50
1.41
1135753--1135826
4
17.8
4
73
13
51
47
6
25
20
1.74
1139988--1140337
178
2.0
178
97
1
666
24
22
27
25
1.99
1147336--1147367
12
2.8
11
90
9
55
87
12
0
0
0.54
1148520--1148564
12
3.8
12
85
2
65
0
31
26
42
1.56
1148519--1148564
4
11.8
4
88
4
58
0
30
26
43
1.55
1148729--1148847
61
2.0
61
96
0
220
37
20
17
24
1.93
1148790--1149968
333
3.5
331
89
2
1719
32
15
24
26
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1148790--1149984
499
2.4
499
89
2
1814
33
15
24
26
1.95
1148790--1149984
166
7.2
167
90
2
1761
33
15
24
26
1.95
1151241--1151276
2
18.0
2
100
0
72
50
0
50
0
1.00
1157305--1157334
3
10.0
3
92
0
51
3
30
0
66
1.07
1157355--1158610
437
2.9
438
92
2
2108
36
16
14
32
1.89
1159650--1159693
2
22.0
2
90
0
70
0
45
0
54
0.99
1167263--1167295
2
17.0
2
90
6
50
0
45
0
54
0.99
1167263--1167302
17
2.3
18
91
8
66
0
42
0
57
0.98
1167263--1167302
19
2.1
19
100
0
80
0
42
0
57
0.98
1173936--1173962
14
1.9
14
100
0
54
44
7
7
40
1.60

Tables:   1   2   3   4

The End!