oyster.v9_M.fa.s34.2.7.7.80.10.50.500.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold678
Parameters: 2 7 7 80 10 50 500
Length:  1173314

Tables:   1   2   3   4   

This is table  4  of  4  ( 461 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
884109--884161	17	3.4	17	70	24	53	28	15	15	41	1.87
885068--885386	30	10.5	30	92	2	460	23	11	20	44	1.84
885984--887173	46	25.9	46	89	0	1624	34	25	14	25	1.94
889997--890029	15	2.2	15	100	0	66	24	27	18	30	1.98
891220--891333	35	3.4	35	65	18	96	25	15	22	35	1.94
891218--891356	66	2.1	66	94	1	242	25	14	23	37	1.92
899917--900068	70	2.2	69	93	1	259	28	16	11	43	1.83
901096--901183	4	22.0	4	100	0	176	25	0	25	50	1.50
901312--901469	67	2.4	67	86	0	226	11	23	18	46	1.81
905286--905327	12	3.5	12	83	9	59	85	0	0	14	0.59
912359--912383	11	2.3	11	100	0	50	40	8	16	36	1.77
916524--917018	43	11.5	43	90	0	767	22	19	22	35	1.96
920800--920851	2	26.0	2	100	0	104	0	50	0	50	1.00
921643--922452	49	16.7	49	82	2	869	9	28	31	30	1.88
921617--922452	97	8.6	96	83	5	851	9	27	31	31	1.88
921643--922452	146	5.6	146	82	4	884	9	28	31	30	1.88
921643--922439	292	2.7	289	84	3	981	9	28	31	30	1.88
926422--926450	2	14.5	2	100	0	58	51	0	48	0	1.00
931546--932066	42	12.7	42	85	5	652	40	8	15	35	1.79
931583--931644	31	2.0	31	83	0	79	37	9	12	40	1.77
931546--931686	73	1.9	73	88	0	210	39	9	13	37	1.77
931841--931909	19	3.4	19	67	21	59	39	10	18	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
931967--932035	19	3.4	19	69	21	59	40	7	15	36	1.76
933901--933973	23	3.3	23	67	21	66	39	6	16	36	1.75
933892--934061	42	4.1	42	83	4	236	40	5	17	35	1.74
941382--941411	4	7.5	4	100	0	60	73	0	0	26	0.84
941409--941442	4	8.5	4	100	0	68	52	23	0	23	1.47
943925--943974	20	2.5	21	77	6	59	34	12	18	36	1.87
943925--943982	20	3.0	18	71	14	53	31	10	15	43	1.80
945871--946176	167	1.8	167	86	7	422	31	20	18	29	1.96
950066--950216	50	3.0	50	99	0	293	21	21	24	32	1.98
950614--951802	32	37.2	32	89	1	1666	29	32	6	31	1.84
954577--954686	40	2.7	40	84	2	139	41	14	10	33	1.79
954695--955529	40	20.8	40	84	1	956	32	20	13	33	1.91
955318--955383	21	3.2	21	65	16	57	33	19	12	34	1.89
957766--957977	64	3.3	64	91	0	307	12	16	27	42	1.85
957765--957977	96	2.2	96	88	0	327	12	16	28	42	1.85
957771--957956	32	5.8	32	94	0	318	12	15	27	44	1.83
960987--961054	2	35.0	2	94	5	122	0	50	0	50	1.00
961997--962056	2	30.0	2	100	0	120	0	50	0	50	1.00
963127--963153	11	2.5	11	100	0	54	29	11	0	59	1.32
963610--963638	1	29.0	1	100	0	58	0	100	0	0	0.00
965197--965266	27	2.6	27	95	0	122	27	11	35	25	1.90
966238--966280	21	2.0	21	86	8	61	55	30	2	11	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
970589--971609	54	18.8	54	83	10	1113	34	13	17	34	1.89
970589--971606	278	3.7	268	86	6	1279	34	13	17	34	1.89
971459--971630	54	3.2	54	88	4	240	35	12	17	34	1.87
970589--971609	332	3.1	328	89	3	1505	34	13	17	34	1.89
985722--985805	31	2.7	30	81	5	96	33	15	16	34	1.91
988191--989034	437	1.9	437	88	1	1271	29	17	16	36	1.91
989114--989450	179	1.9	179	90	2	543	34	21	15	27	1.94
989607--989729	59	2.1	59	98	0	237	47	14	18	19	1.83
991184--991235	20	2.6	20	96	0	95	26	28	13	30	1.94
1000374--1000418	20	2.2	20	96	0	81	28	17	22	31	1.97
1000991--1001015	13	1.9	13	100	0	50	32	8	4	56	1.47
1005217--1005293	18	4.3	18	86	6	102	18	33	23	24	1.96
1005545--1005587	22	2.0	22	90	0	68	9	13	32	44	1.76
1007487--1007545	2	29.5	2	96	0	109	52	0	47	0	1.00
1013969--1014131	81	2.0	80	97	1	308	32	16	17	33	1.92
1030470--1031600	166	6.8	166	85	4	1429	38	15	16	28	1.90
1032109--1032448	65	5.2	65	88	2	477	30	28	10	30	1.91
1032109--1032448	130	2.6	130	93	1	556	30	28	10	30	1.91
1033876--1034229	177	2.0	176	97	0	672	32	20	11	34	1.89
1037242--1037285	17	2.6	17	92	0	70	18	31	18	31	1.95
1037303--1037335	13	2.4	14	95	5	59	39	0	0	60	0.97
1038204--1038252	15	3.1	15	79	5	53	18	26	36	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1044094--1044175	27	3.0	27	90	0	137	34	17	7	41	1.77
1067735--1067810	23	3.2	23	62	20	57	35	13	11	39	1.81
1067664--1067879	48	4.5	48	95	0	360	31	19	13	34	1.91
1071670--1071709	20	2.0	20	90	0	62	17	0	30	52	1.45
1079720--1079757	19	2.1	19	85	14	53	42	10	5	42	1.62
1092083--1092108	4	6.5	4	100	0	52	50	26	23	0	1.50
1092083--1092128	16	2.9	16	83	0	56	47	21	30	0	1.51
1095512--1095536	13	1.9	13	100	0	50	44	0	8	48	1.32
1096194--1096218	13	1.9	13	100	0	50	44	16	0	40	1.47
1101579--1102030	172	2.6	172	95	0	798	35	15	19	29	1.93
1102408--1102441	14	2.5	13	90	4	50	82	17	0	0	0.67
1102408--1102443	13	2.7	13	86	4	54	80	19	0	0	0.71
1106338--1106367	12	2.5	12	94	0	51	46	20	33	0	1.51
1117289--1117337	2	24.5	2	100	0	98	51	0	48	0	1.00
1125727--1125769	16	2.7	16	85	0	59	11	9	46	32	1.72
1135892--1135937	8	5.8	8	84	0	56	0	28	39	32	1.57
1135884--1135942	16	3.7	16	83	0	64	0	33	35	30	1.58
1135951--1136919	172	5.6	172	93	0	1582	27	18	15	37	1.92
1141174--1141203	2	15.0	2	100	0	60	0	0	50	50	1.00
1146494--1147531	85	12.2	85	89	2	1545	31	18	20	30	1.96
1146490--1147531	254	4.1	255	92	2	1616	31	17	20	30	1.96
1146494--1147531	339	3.1	339	89	2	1613	31	18	20	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1148935--1148984	25	2.0	25	100	0	100	32	0	16	52	1.44
1149482--1149684	102	2.0	102	88	1	300	27	18	17	36	1.93
1149584--1150518	167	5.6	166	85	4	1228	25	24	15	34	1.95
1154003--1154131	4	32.8	4	86	3	73	1	34	11	52	1.47
1154003--1154131	6	21.8	6	71	3	73	1	34	11	52	1.47
1154003--1154131	12	10.8	12	80	6	82	1	34	11	52	1.47
1154042--1154113	8	9.1	8	86	3	92	1	26	19	52	1.54
1154015--1154125	41	2.6	41	82	4	141	1	32	13	52	1.51
1154789--1154900	33	3.4	33	77	15	115	35	12	9	41	1.76
1154786--1154900	17	6.9	17	81	7	128	36	12	9	41	1.75
1154837--1154871	16	2.2	16	90	5	54	37	14	11	37	1.82
1160793--1160840	2	24.0	2	100	0	96	0	50	0	50	1.00
1164989--1165015	2	13.5	2	100	0	54	48	0	0	51	1.00

Tables:   1   2   3   4

The End!