oyster.v9_M.fa.s36.2.7.7.80.10.50.500.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold867
Parameters: 2 7 7 80 10 50 500
Length:  1160077

Tables:   1   2   3   4   

This is table  3  of  4  ( 392 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
715107--715168	31	2.0	31	96	0	115	24	25	25	24	2.00
715789--715838	16	3.1	16	97	0	91	6	22	26	46	1.74
716125--716149	1	25.0	1	100	0	50	100	0	0	0	0.00
716103--716155	28	1.9	28	88	3	81	86	5	0	7	0.69
720421--720453	18	1.9	17	88	11	50	39	12	6	42	1.67
721490--721530	21	2.0	21	85	4	57	34	17	12	36	1.87
728084--728210	63	2.0	64	89	1	193	67	14	3	13	1.35
728161--728225	26	2.5	26	85	5	78	84	12	3	0	0.73
728161--728225	29	2.3	29	86	2	87	84	12	3	0	0.73
728301--728386	42	2.1	41	89	4	136	38	4	31	24	1.76
728379--728424	2	23.0	2	100	0	92	50	0	50	0	1.00
729090--729131	22	2.0	22	90	4	68	38	9	9	42	1.70
729539--729577	2	19.5	2	94	0	69	48	0	2	48	1.15
746404--746444	2	21.0	2	95	5	75	0	51	0	48	1.00
753810--753858	25	2.0	24	100	0	89	36	16	16	28	1.90
755327--755366	11	3.5	11	93	6	62	57	0	0	42	0.98
756598--756651	2	27.0	2	100	0	108	0	50	0	50	1.00
756742--756775	4	8.5	4	100	0	68	52	0	23	23	1.47
760914--760990	40	1.9	40	91	0	127	1	36	9	53	1.41
760924--761007	2	42.0	2	82	0	96	1	40	5	52	1.34
770531--770690	11	14.5	11	70	1	113	24	24	8	42	1.82
770533--770686	22	7.0	22	85	1	209	24	24	8	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
770540--770670	67	2.0	67	90	0	208	24	22	9	43	1.82
777117--777156	16	2.5	16	87	0	62	22	0	25	52	1.47
777394--777548	31	4.8	32	93	3	224	46	16	14	21	1.83
777674--777741	4	17.0	4	100	0	136	25	25	0	50	1.50
779289--779893	203	3.0	203	95	0	1075	30	15	21	32	1.94
781110--781269	29	5.5	29	82	0	176	43	14	15	26	1.85
781111--781269	58	2.7	57	83	3	201	43	13	15	27	1.85
781111--781269	87	1.8	87	86	2	230	43	13	15	27	1.85
781361--782334	8	117.9	8	88	5	1354	49	13	13	23	1.77
781361--782334	25	39.3	24	89	4	1354	49	13	13	23	1.77
781361--782334	33	29.5	32	87	5	1354	49	13	13	23	1.77
811997--812034	11	3.5	11	92	0	67	47	23	18	10	1.79
811997--812053	22	2.5	23	82	5	62	45	24	21	8	1.80
812188--812229	11	3.8	11	81	12	50	50	30	7	11	1.66
815943--816029	4	21.8	4	92	0	147	49	0	22	27	1.50
823920--823986	7	9.6	7	83	0	89	35	14	22	26	1.93
859372--859764	197	2.0	196	100	0	777	27	13	13	44	1.82
863470--863514	23	2.0	23	95	0	81	22	4	57	15	1.56
863714--863738	13	1.9	13	100	0	50	44	8	16	32	1.76
865224--865249	10	2.6	10	100	0	52	23	34	11	30	1.90
866327--866363	2	18.5	2	100	0	74	0	48	0	51	1.00
873625--874412	168	4.7	168	87	2	1037	31	19	19	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
874583--874613	7	4.4	7	91	0	53	25	41	32	0	1.56
875570--875595	12	2.2	12	100	0	52	23	34	7	34	1.83
876544--876586	17	2.7	16	82	10	52	25	16	11	46	1.80
886583--886886	165	1.8	165	84	4	416	37	18	13	30	1.89
887477--887663	15	11.5	15	68	18	90	44	10	5	39	1.64
887540--887669	52	2.6	52	79	4	142	43	12	7	36	1.71
888653--889220	177	3.2	177	86	3	738	32	25	17	23	1.97
888653--889298	177	3.7	173	84	5	518	33	24	18	23	1.97
891357--891396	21	1.9	21	85	10	55	10	7	22	60	1.54
891582--892293	55	13.0	55	85	0	895	20	29	12	37	1.89
904274--904309	2	18.0	2	100	0	72	0	50	0	50	1.00
906850--906878	9	3.3	9	95	4	51	6	93	0	0	0.36
913065--913101	2	18.5	2	100	0	74	48	0	51	0	1.00
924459--924485	12	2.2	12	100	0	54	44	0	11	44	1.39
927381--927405	1	25.0	1	100	0	50	0	0	100	0	0.00
929997--930296	28	10.7	27	80	9	300	34	35	6	23	1.80
929997--930325	56	5.9	55	81	8	346	35	35	5	23	1.78
930011--930296	84	3.4	83	86	5	357	35	35	5	23	1.79
931029--931375	133	2.6	135	82	2	430	29	25	20	24	1.99
931767--932623	57	14.7	56	72	12	421	43	27	9	20	1.83
931767--932618	29	29.1	29	73	9	595	43	27	9	19	1.83
932636--932744	29	3.8	28	76	7	94	51	24	5	18	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
932638--932762	29	4.3	29	75	4	92	54	24	5	16	1.63
932698--932763	28	2.3	28	86	2	87	54	24	7	13	1.65
935593--935619	2	13.5	2	100	0	54	51	0	48	0	1.00
940356--940396	3	13.7	3	100	0	82	34	0	65	0	0.93
952321--952363	22	2.0	22	90	0	68	37	6	13	41	1.72
952351--952423	19	3.7	19	75	15	67	41	9	12	36	1.75
952331--952423	41	2.3	41	84	3	116	39	9	11	38	1.75
952331--952404	22	3.5	20	80	10	78	37	10	13	37	1.80
958213--958619	21	19.2	21	73	8	211	35	21	16	26	1.94
958212--958600	84	4.6	84	83	4	390	35	21	16	26	1.94
958250--958600	63	5.6	63	77	4	305	35	21	16	25	1.94
958202--958619	42	9.9	41	74	6	291	36	20	16	26	1.94
959436--959682	106	2.3	105	83	6	295	28	17	19	34	1.95
959452--959724	42	6.5	42	84	1	287	28	17	19	34	1.95
959452--959678	21	10.8	21	75	10	180	28	18	20	33	1.96
960145--960190	24	2.0	23	86	4	65	30	13	19	36	1.90
962576--962611	16	2.2	16	90	0	54	25	0	36	38	1.56
965919--966349	161	2.7	161	87	1	596	36	19	14	29	1.92
968781--968839	30	2.0	30	93	0	100	5	49	11	33	1.62
970634--970842	42	5.0	43	87	3	241	18	17	20	44	1.87
972584--972618	15	2.3	15	95	0	61	25	17	34	22	1.96
972816--973023	41	5.1	41	96	0	353	38	26	13	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
975364--975502	39	3.5	39	91	2	224	26	20	15	38	1.92
975475--975528	26	2.1	26	92	0	90	31	16	12	38	1.87
978055--978108	24	2.2	24	80	0	63	22	40	12	24	1.89
979720--979878	24	6.6	24	97	0	291	23	20	12	44	1.85
979720--980044	48	7.0	48	86	10	469	21	19	12	45	1.84
979720--980044	72	4.7	72	87	9	469	21	19	12	45	1.84
979768--979977	110	1.9	110	98	0	402	21	19	12	46	1.83
979878--980044	24	7.0	24	88	6	241	20	19	13	46	1.83
979674--980036	158	2.3	158	91	1	568	20	20	12	45	1.84
979810--979976	86	1.9	86	93	2	271	20	19	12	46	1.82
979744--980012	134	2.0	134	92	4	445	21	19	13	45	1.84
985398--985439	18	2.3	19	87	4	59	59	26	7	7	1.50
987051--987122	30	2.4	30	92	0	117	19	27	20	31	1.97
991563--991596	2	17.0	2	100	0	68	50	0	50	0	1.00
994072--994111	16	2.5	16	87	0	53	20	32	15	32	1.93
994900--994941	18	2.3	18	91	0	66	33	14	11	40	1.82
994911--994949	18	2.2	18	85	0	51	38	15	12	33	1.85
996807--996864	19	3.1	19	97	0	107	41	10	15	32	1.81
997523--997567	8	5.6	8	91	0	72	2	35	22	40	1.66
997523--997570	4	12.0	4	77	0	51	2	33	22	41	1.66
998091--998270	36	4.9	36	75	12	168	41	13	17	27	1.87
998171--998252	43	1.9	43	90	2	130	40	17	17	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
999370--999438	24	2.9	24	80	0	84	27	30	23	18	1.98
1008556--1008629	22	3.6	19	75	13	60	50	8	6	35	1.59
1008593--1008630	20	1.9	20	88	0	58	52	7	5	34	1.53
1008613--1008663	15	3.2	16	83	8	68	47	7	1	43	1.43
1008613--1008661	16	3.1	15	85	5	62	46	8	2	42	1.45
1015608--1015642	17	2.1	17	100	0	70	40	11	5	42	1.65
1025808--1025840	2	16.5	2	100	0	66	0	48	0	51	1.00
1035302--1035349	2	24.0	2	91	0	78	0	50	0	50	1.00
1036968--1036994	2	13.5	2	100	0	54	51	0	48	0	1.00
1039474--1041526	33	61.5	33	82	5	2245	18	26	16	38	1.91

Tables:   1   2   3   4