oyster.v9_M.fa.s36.2.7.7.80.10.50.500.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold867
Parameters: 2 7 7 80 10 50 500
Length:  1160077

Tables:   1   2   3   4   

This is table  4  of  4  ( 392 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1041333--1041527	107	1.8	107	97	0	372	17	27	14	39	1.89
1046396--1046432	20	1.9	20	89	10	60	35	5	21	37	1.77
1046209--1047529	440	3.0	439	91	2	2121	33	14	16	35	1.89
1053620--1054875	25	50.6	25	87	1	1679	19	18	22	39	1.93
1056248--1056666	146	2.9	145	87	3	578	30	21	18	30	1.96
1057303--1057359	30	1.9	30	96	0	105	43	12	15	28	1.83
1064287--1064333	18	2.6	18	83	6	51	14	42	0	42	1.46
1064305--1064344	18	2.2	18	90	0	62	10	45	0	45	1.37
1071962--1072032	1	71.0	1	85	0	97	0	2	4	92	0.44
1076606--1076640	15	2.3	15	90	0	52	40	37	11	11	1.77
1076746--1076784	2	19.5	2	100	0	78	48	0	51	0	1.00
1078258--1078610	34	10.0	34	92	4	544	36	25	26	11	1.91
1078258--1078614	72	5.0	72	89	5	532	36	25	26	11	1.90
1078597--1078626	4	7.5	4	92	0	51	46	26	26	0	1.53
1078563--1078659	50	1.9	50	89	4	151	39	24	26	9	1.86
1081354--1081404	2	25.5	2	100	0	102	49	0	50	0	1.00
1091371--1091396	12	2.2	12	100	0	52	61	15	7	15	1.55
1120582--1120677	45	2.1	45	84	3	122	36	16	28	18	1.93
1121039--1121065	9	3.0	9	100	0	54	33	11	33	22	1.89
1120791--1121206	166	2.6	157	79	5	415	35	18	24	22	1.96
1136975--1137004	2	15.0	2	92	0	51	50	0	3	46	1.18
1140144--1140175	2	16.0	2	100	0	64	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1143835--1143884	22	2.3	22	79	6	57	10	38	16	36	1.82
1144803--1144886	15	5.5	15	72	12	55	40	4	13	41	1.65
1146890--1146914	13	1.9	13	100	0	50	44	24	0	32	1.54
1147358--1147408	22	2.3	22	86	0	66	31	13	45	9	1.76
1148397--1148458	22	2.9	20	81	18	63	9	43	12	33	1.76
1151180--1151207	1	28.0	1	100	0	56	0	0	100	0	0.00
1155355--1155414	20	3.2	20	64	22	58	36	25	10	28	1.88
1154300--1156224	35	55.2	35	84	1	2357	35	25	12	26	1.92
1157915--1158022	50	2.1	53	89	5	168	20	13	15	50	1.78
1158341--1158456	52	2.2	52	83	6	137	20	12	17	50	1.78

Tables:   1   2   3   4

The End!