oyster.v9_M.fa.s37.2.7.7.80.10.50.500.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold1154
Parameters: 2 7 7 80 10 50 500
Length:  1159333

Tables:   1   2   3   

This is table  3  of  3  ( 307 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
867409--867815	204	2.0	203	100	0	805	29	7	24	37	1.84
885723--885756	2	17.0	2	87	0	50	0	52	2	44	1.16
910386--910424	2	19.5	2	94	0	69	0	48	0	51	1.00
911470--911513	2	22.0	2	95	0	79	47	0	52	0	1.00
915050--915231	97	1.9	97	89	2	285	31	15	10	41	1.82
932747--932791	2	22.5	2	100	0	90	51	0	48	0	1.00
934208--934854	146	4.5	146	84	5	827	30	20	19	29	1.97
934861--934894	12	2.8	12	86	0	50	38	23	38	0	1.55
941142--941167	12	2.2	12	100	0	52	84	0	0	15	0.62
942100--942603	43	11.5	43	85	5	665	33	10	8	47	1.68
942100--942604	133	3.9	128	84	8	658	33	10	8	47	1.68
942086--942608	176	3.0	176	89	3	791	33	10	8	47	1.68
947008--947049	21	2.0	21	90	0	66	33	21	28	16	1.95
951509--951568	26	2.3	26	100	0	120	36	16	10	36	1.82
953391--953463	24	3.0	24	81	0	74	9	16	20	53	1.70
959219--959249	16	1.9	16	93	0	53	29	22	6	41	1.78
965346--965384	20	1.9	20	89	0	60	35	25	5	33	1.78
973840--973864	12	2.1	12	100	0	50	92	0	8	0	0.40
984140--984164	1	25.0	1	100	0	50	0	0	100	0	0.00
988000--988060	2	30.5	2	100	0	122	0	49	0	50	1.00
991048--991085	1	38.0	1	100	0	76	0	0	0	100	0.00
998724--999197	237	2.0	236	99	0	939	38	13	20	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1002881--1003010	66	2.0	66	84	0	170	42	13	14	30	1.84
1005667--1005703	1	37.0	1	94	0	65	0	2	0	97	0.18
1005728--1005760	2	16.5	2	100	0	66	48	0	51	0	1.00
1022661--1022794	66	2.0	66	86	2	189	38	15	14	31	1.88
1024108--1024133	3	8.7	3	100	0	52	30	0	0	69	0.89
1030199--1030282	42	2.0	42	88	0	123	11	26	32	29	1.92
1039653--1040743	166	6.5	166	81	8	1251	26	23	17	33	1.96
1042386--1043743	20	67.0	20	71	9	766	40	43	5	10	1.63
1042386--1043125	226	3.3	222	82	5	848	40	44	5	9	1.62
1042510--1043721	82	14.9	80	72	10	568	40	43	6	9	1.62
1043105--1043567	246	2.0	229	88	9	682	39	43	6	10	1.64
1043423--1043461	12	3.6	12	74	25	50	38	56	5	0	1.22
1043814--1043869	20	2.8	20	73	10	60	42	35	3	17	1.67
1053756--1053800	12	3.8	12	78	0	54	80	15	4	0	0.87
1058240--1058275	2	18.0	2	100	0	72	50	0	50	0	1.00
1060401--1060449	19	2.5	20	83	3	64	34	26	12	26	1.92
1072730--1072774	22	2.0	23	95	4	83	48	13	13	24	1.78
1075084--1075134	22	2.3	22	86	6	68	13	17	27	41	1.87
1093652--1093824	92	1.9	92	81	4	215	29	19	15	36	1.92
1093740--1094025	83	3.4	83	77	4	290	30	19	16	34	1.94
1111147--1111544	131	3.0	139	77	12	479	37	19	17	25	1.93
1112444--1112481	4	9.2	4	88	5	58	2	23	0	73	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1112445--1112480	17	2.1	17	94	0	63	2	19	0	77	0.88
1117526--1118075	180	3.0	179	89	2	834	37	17	15	29	1.91
1125774--1125870	21	4.7	21	84	5	117	36	22	13	27	1.92
1126045--1126078	5	6.8	5	89	0	50	41	26	11	20	1.87
1126045--1126078	10	3.4	10	91	0	59	41	26	11	20	1.87
1126105--1126181	21	3.7	21	82	5	93	42	23	10	23	1.84
1126102--1126181	42	1.9	42	84	5	108	41	23	10	25	1.85
1126716--1126752	18	2.1	18	94	0	65	24	35	27	13	1.93
1128215--1128468	75	3.4	75	94	0	436	36	23	18	22	1.95
1130260--1130292	16	2.1	16	100	0	66	30	6	18	45	1.73
1136307--1136346	2	20.0	2	84	0	53	57	0	42	0	0.98
1136308--1136346	10	3.9	10	89	0	60	58	0	41	0	0.98
1137633--1137662	2	15.0	2	100	0	60	0	50	0	50	1.00
1137689--1138032	20	16.8	20	84	2	373	37	23	11	27	1.90
1137682--1138052	21	18.0	21	83	5	388	37	23	11	27	1.89
1137689--1138052	103	3.5	102	91	2	543	37	23	11	27	1.90
1137682--1138052	185	2.0	185	89	2	575	37	23	11	27	1.89
1148105--1148143	2	19.5	2	100	0	78	0	51	0	48	1.00
1148320--1148358	16	2.4	16	91	0	60	89	0	2	7	0.56
1148366--1148417	2	26.0	2	100	0	104	0	0	50	50	1.00
1156322--1156377	21	2.6	20	86	10	76	35	30	17	16	1.92
1156305--1156384	21	3.9	20	78	4	70	36	28	18	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1157720--1157755	2	18.0	2	100	0	72	50	0	50	0	1.00

Tables:   1   2   3

The End!