Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: scaffold204 Parameters: 2 7 7 80 10 50 500 Length: 1152859

Tables:   1   2   3   

This is table  3  of  3  ( 357 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
762952--762987
17
2.1
18
89
5
56
33
25
5
36
1.79
766225--766262
18
2.1
18
95
0
67
47
10
13
28
1.76
771253--771306
19
2.8
19
85
0
72
53
16
5
24
1.64
775334--775385
2
26.0
2
100
0
104
50
0
50
0
1.00
797123--797160
20
1.9
20
100
0
76
26
31
13
28
1.93
798859--798935
38
2.0
38
97
0
145
36
23
10
29
1.88
799226--799762
180
3.0
175
85
7
723
30
15
15
37
1.89
800803--800833
15
2.1
15
93
0
53
45
6
32
16
1.72
804892--805673
322
2.4
322
87
4
1115
39
14
17
28
1.89
805220--805669
167
2.8
159
81
7
502
40
15
16
28
1.89
806989--807607
167
3.6
168
89
5
897
29
19
15
35
1.92
806989--807607
338
1.8
339
92
1
1055
29
19
15
35
1.92
806989--807607
171
3.6
172
89
4
950
29
19
15
35
1.92
807891--807924
2
17.0
2
100
0
68
50
0
50
0
1.00
819949--819987
2
19.5
2
100
0
78
0
51
0
48
1.00
820110--820137
2
14.0
2
100
0
56
50
50
0
0
1.00
820137--820164
2
14.0
2
100
0
56
0
50
0
50
1.00
824013--824557
166
3.3
165
89
3
821
26
23
16
33
1.96
824504--824693
95
2.0
95
100
0
380
28
13
13
44
1.82
824733--824771
11
3.5
11
89
0
60
43
10
28
17
1.82
827210--827249
12
3.3
12
85
0
62
2
37
25
35
1.69
834608--834677
8
8.8
8
85
0
86
0
27
41
31
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
834607--834677
16
4.4
16
90
0
106
0
28
40
30
1.57
834607--834682
24
3.2
24
84
0
98
0
30
39
30
1.57
834691--835143
172
2.6
172
96
0
834
30
20
15
34
1.93
837713--837779
21
3.2
21
83
8
91
25
16
19
38
1.92
837838--837905
21
3.3
20
78
8
82
30
13
13
42
1.82
837984--838077
21
4.5
21
81
5
100
41
17
12
28
1.86
837984--838077
42
2.2
42
84
3
118
41
17
12
28
1.86
839150--839511
160
2.3
161
89
1
539
35
20
13
30
1.91
854774--855395
172
3.6
172
93
0
1064
36
14
18
30
1.91
855746--855778
12
2.8
12
90
4
50
0
33
27
39
1.57
855971--856334
166
2.1
167
87
5
523
32
15
27
24
1.95
859437--859461
11
2.3
11
100
0
50
32
20
32
16
1.94
861260--861289
2
15.0
2
100
0
60
50
0
50
0
1.00
862968--863028
30
2.0
30
93
0
104
34
8
16
40
1.78
867822--867879
30
1.9
30
96
0
107
12
39
15
32
1.84
871909--871934
1
26.0
1
100
0
52
100
0
0
0
0.00
872569--872604
18
2.0
18
100
0
72
44
16
16
22
1.86
882720--882753
2
17.0
2
100
0
68
50
0
0
50
1.00
900239--900595
165
2.1
166
84
3
457
29
18
18
33
1.95
906594--906626
17
1.9
17
100
0
66
30
24
21
24
1.99
907716--907803
4
22.5
4
87
4
117
23
27
2
46
1.64
907918--907953
17
2.1
17
89
0
54
0
0
30
69
0.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
912471--912501
13
2.4
13
94
0
53
87
9
3
0
0.66
913541--913624
21
4.0
21
76
0
78
39
10
17
32
1.84
913544--913624
42
1.9
42
84
0
108
38
11
18
32
1.86
914085--914124
20
2.0
20
100
0
80
60
15
10
15
1.60
915161--915317
63
2.5
63
86
2
199
32
17
14
35
1.90
915167--915326
21
7.6
21
81
2
169
33
17
13
35
1.89
915332--915407
21
3.6
21
74
0
80
34
21
11
32
1.89
915325--915463
42
3.3
42
84
0
161
36
17
13
32
1.89
915397--915537
21
6.7
21
70
3
104
41
14
14
30
1.85
915397--915535
42
3.3
42
80
8
158
40
14
14
30
1.86
915403--915537
63
2.1
62
78
9
148
41
14
14
30
1.85
915619--915703
21
4.0
21
85
0
107
30
16
11
41
1.84
918394--918470
33
2.3
33
93
0
127
29
31
18
20
1.96
926714--926769
28
2.0
28
100
0
112
35
7
17
39
1.78
929640--929688
2
24.5
2
100
0
98
51
0
48
0
1.00
932829--932868
2
20.0
2
100
0
80
50
0
50
0
1.00
932547--933193
326
2.0
325
99
0
1285
35
11
22
30
1.89
933155--933214
2
30.0
2
93
0
102
46
0
50
3
1.18
936422--936469
2
24.0
2
100
0
96
50
0
50
0
1.00
948624--948666
17
2.5
17
88
0
59
32
16
23
27
1.96
948724--948763
15
2.6
16
88
4
55
45
10
20
25
1.81
949035--949066
16
2.0
16
100
0
64
50
12
12
25
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
950170--950708
180
3.0
179
95
1
963
36
18
15
29
1.92
953653--953697
20
2.3
19
81
11
54
44
8
0
46
1.34
957448--957499
25
2.1
26
89
7
81
57
13
5
23
1.57
958752--958790
4
9.8
4
94
0
60
0
43
25
30
1.55
966922--966957
18
2.0
19
89
10
58
33
11
0
55
1.35
967309--967352
4
11.0
4
90
0
61
0
31
25
43
1.55
967310--967359
12
4.2
12
86
0
55
0
34
26
40
1.56
967310--967359
16
3.1
16
94
0
91
0
34
26
40
1.56
967383--968508
165
6.8
167
90
3
1682
29
17
15
37
1.91
967381--968508
332
3.4
331
91
2
1771
29
17
15
37
1.91
979680--979713
17
1.9
18
94
5
61
23
20
23
32
1.98
982117--982155
17
2.3
17
81
0
51
30
12
2
53
1.52
987775--987804
13
2.3
13
100
0
60
0
6
0
93
0.35
990760--990816
23
2.5
23
91
5
89
40
26
22
10
1.86
995018--995095
21
3.8
21
84
1
68
42
19
10
28
1.83
995326--995403
21
3.7
21
79
3
77
38
23
10
28
1.87
997788--997817
7
4.3
7
91
0
51
73
23
0
3
0.98
1006970--1007074
53
2.0
53
88
3
158
56
6
8
28
1.55
1009178--1009273
48
2.0
47
84
6
122
38
15
14
31
1.88
1009794--1009819
1
26.0
1
100
0
52
0
0
0
100
0.00
1014944--1015024
2
41.0
2
97
2
155
0
49
0
50
1.00
1016546--1017374
413
2.0
411
96
0
1523
35
15
15
34
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1019976--1020050
21
3.6
21
76
7
62
30
8
21
40
1.82
1026201--1026251
2
25.5
2
100
0
102
0
50
0
49
1.00
1027123--1027185
2
31.5
2
100
0
126
0
49
0
50
1.00
1028602--1028643
4
10.8
4
84
5
50
33
26
40
0
1.56
1030577--1030642
2
33.0
2
100
0
132
0
50
0
50
1.00
1031151--1031180
1
30.0
1
100
0
60
0
0
0
100
0.00
1031242--1031273
1
32.0
1
100
0
64
0
0
0
100
0.00
1048452--1048782
111
3.0
112
93
0
565
27
37
14
20
1.92
1056965--1057168
101
2.0
101
92
0
336
50
11
15
22
1.75
1087065--1087634
177
3.2
177
88
2
781
23
17
25
33
1.96
1088516--1088580
36
1.9
32
87
12
94
33
6
10
49
1.63
1088515--1088590
15
4.7
15
75
15
62
35
5
10
48
1.60
1088556--1088703
15
9.1
15
69
16
73
39
4
12
43
1.63
1088552--1088769
98
2.2
97
80
9
248
38
5
12
43
1.67
1090843--1090896
21
2.6
21
100
0
108
25
9
24
40
1.85
1090817--1090896
42
1.9
42
84
5
108
27
8
22
41
1.83
1091141--1091216
21
3.6
21
92
0
125
27
15
21
35
1.94
1091534--1091576
10
4.4
10
79
2
52
32
0
11
55
1.36
1095793--1095838
2
23.0
2
100
0
92
0
50
0
50
1.00
1100248--1100409
27
6.0
27
91
1
236
14
39
15
30
1.87
1100248--1100409
81
2.0
81
92
0
270
14
39
15
30
1.87
1100441--1100593
18
8.6
18
74
6
114
7
11
43
37
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1100453--1100578
18
7.2
17
77
7
126
6
10
46
36
1.63
1100441--1100578
36
3.9
35
84
6
179
6
10
45
36
1.65
1100441--1100571
53
2.4
54
89
1
192
6
10
45
36
1.66
1100562--1101193
90
7.0
90
95
0
1066
19
15
30
34
1.93
1104432--1104474
13
3.3
13
83
0
50
81
11
2
4
0.93
1111916--1111959
2
22.0
2
100
0
88
0
50
0
50
1.00
1118472--1118531
31
1.9
31
93
0
102
35
23
11
30
1.90

Tables:   1   2   3   

The End!