oyster.v9_M.fa.s39.2.7.7.80.10.50.500.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold1174
Parameters: 2 7 7 80 10 50 500
Length:  1120009

Tables:   1   2   3   

This is table  3  of  3  ( 291 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
912843--912894	20	2.7	20	82	11	65	0	0	19	80	0.71
912853--912894	4	10.5	4	85	10	59	0	0	21	78	0.75
912850--912892	15	2.7	16	89	7	61	0	0	20	79	0.74
916373--916417	2	22.5	2	100	0	90	0	51	0	48	1.00
928574--928895	46	7.0	46	99	0	635	34	19	23	22	1.96
932070--932134	21	2.7	25	70	20	66	24	9	21	44	1.81
932161--932189	15	1.9	15	100	0	58	20	10	27	41	1.85
932373--932460	21	4.2	21	88	4	126	26	13	22	37	1.91
932342--932460	42	2.9	41	84	5	132	26	12	23	36	1.91
943390--943802	174	2.3	173	90	4	614	28	15	18	37	1.92
945691--945728	2	19.0	2	100	0	76	50	0	0	50	1.00
945808--945832	2	12.5	2	100	0	50	48	0	0	52	1.00
950579--950604	12	2.2	12	100	0	52	23	38	26	11	1.89
953048--953077	3	10.0	3	92	0	51	33	3	0	63	1.11
965269--965353	35	2.4	35	92	0	134	38	22	7	31	1.81
965638--965673	2	18.0	2	100	0	72	0	50	0	50	1.00
966347--966390	2	22.0	2	95	0	61	0	56	0	43	0.99
966611--966644	17	2.0	17	94	0	59	44	17	38	0	1.49
968643--968849	95	2.2	95	92	1	344	38	11	13	37	1.80
968852--968880	12	2.5	12	94	5	51	37	10	10	41	1.73
971383--971438	14	4.0	14	90	0	94	25	7	14	53	1.66
971381--971437	28	2.0	28	96	0	105	28	7	14	50	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
976662--976711	2	25.0	2	100	0	100	50	0	50	0	1.00
990464--990522	17	3.5	17	100	0	118	28	16	11	42	1.84
1005658--1005714	2	28.5	2	100	0	114	49	0	50	0	1.00
1009939--1009967	15	2.0	15	93	6	51	82	13	0	3	0.79
1009937--1009979	17	2.6	16	75	10	50	72	23	0	4	1.04
1016270--1016331	4	15.8	4	93	3	108	53	0	22	24	1.46
1031446--1031520	30	2.5	29	82	6	96	29	24	21	25	1.99
1032202--1032226	11	2.3	11	100	0	50	16	0	16	68	1.22
1047709--1047978	146	1.9	146	93	0	470	30	19	21	28	1.98
1062084--1062271	11	17.9	11	73	13	155	38	31	9	19	1.84
1062083--1062273	21	9.1	21	72	16	121	39	31	9	19	1.84
1062089--1062271	73	2.5	73	90	1	296	39	30	9	20	1.85
1063282--1064139	146	5.9	146	86	3	1127	28	21	19	30	1.97
1064146--1064180	12	2.9	12	86	0	52	34	25	40	0	1.56
1064143--1064181	16	2.4	16	95	0	69	38	25	35	0	1.56
1064143--1064181	20	1.9	20	94	0	69	38	25	35	0	1.56
1069788--1069832	21	2.1	21	100	0	90	33	13	8	44	1.75
1070653--1070925	136	2.0	136	98	0	528	34	17	20	28	1.95
1072085--1072149	31	2.1	31	94	5	114	21	18	26	33	1.96
1073122--1073177	26	2.2	26	100	0	112	46	3	14	35	1.62
1076421--1076446	13	2.0	13	100	0	52	46	23	7	23	1.78
1082974--1083733	399	1.9	400	90	1	1202	30	17	20	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1097599--1097969	161	2.3	160	86	4	496	28	15	20	36	1.93
1107328--1107993	161	4.1	161	89	1	965	28	15	20	35	1.93
1107332--1107963	325	1.9	324	90	0	994	29	15	20	34	1.93
1109530--1110255	363	2.0	362	95	0	1310	41	12	13	33	1.81
1112827--1112877	16	3.3	15	78	10	50	9	39	15	35	1.81
1112798--1112878	38	2.1	38	84	4	101	11	39	13	35	1.80
1119626--1120007	166	2.3	164	84	4	505	40	15	16	27	1.89

Tables:   1   2   3

The End!