Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: scaffold1024 Parameters: 2 7 7 80 10 50 500 Length: 1774716

Tables:   1   2   3   4   5   

This is table  1  of  5  ( 509 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1982--2029
2
24.0
2
100
0
96
0
50
0
50
1.00
4262--4300
17
2.3
17
86
8
53
25
2
2
69
1.14
7646--8072
45
9.5
45
88
2
547
22
33
11
32
1.90
13855--13892
1
38.0
1
94
0
67
0
97
0
2
0.18
15307--15360
21
2.6
21
84
0
72
38
24
11
25
1.88
15571--15836
147
1.8
147
83
8
362
31
21
17
28
1.96
18755--18802
7
6.7
7
76
4
51
10
83
2
2
0.79
32169--32202
4
8.8
4
87
6
52
29
26
44
0
1.55
33437--33500
2
32.0
2
90
0
101
51
1
45
1
1.20
33613--33656
2
22.0
2
90
0
70
0
45
2
52
1.13
33805--33853
2
24.5
2
95
0
89
0
46
0
53
1.00
33575--33932
190
1.9
186
83
10
467
30
26
10
32
1.90
38990--39022
17
1.9
17
100
0
66
24
21
24
30
1.99
40336--40377
4
10.8
4
84
5
50
0
40
26
33
1.56
40628--41028
168
2.4
168
96
0
732
31
18
17
31
1.95
42966--43191
46
4.9
46
82
7
210
34
20
15
28
1.94
42994--43191
46
4.3
46
94
0
333
33
21
16
28
1.95
44467--44507
12
3.6
12
90
6
59
9
39
0
51
1.35
54916--54953
18
2.1
18
95
0
67
21
39
0
39
1.53
59894--59941
16
3.0
16
93
0
87
47
25
20
6
1.73
60520--60582
31
2.0
31
93
0
108
23
23
25
26
2.00
60591--60636
16
2.9
16
100
0
92
6
30
19
43
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62929--62953
12
2.1
12
100
0
50
16
40
0
44
1.47
64369--64403
6
5.8
6
93
0
52
20
11
0
68
1.20
65922--67194
437
2.9
433
84
4
1549
36
16
17
29
1.92
68050--68079
3
10.0
3
92
0
51
3
30
0
66
1.07
68100--69358
440
2.9
438
93
1
2119
36
16
14
32
1.89
69695--69729
16
2.2
16
100
0
70
37
5
20
37
1.76
71045--71194
75
2.0
75
94
0
264
33
24
18
24
1.97
81066--81316
69
3.6
69
79
4
263
12
25
15
46
1.80
87994--88467
168
2.8
168
92
0
797
31
18
20
30
1.96
89596--89934
169
2.0
169
98
0
660
34
14
19
31
1.92
90126--90173
12
4.2
11
86
7
69
47
0
16
35
1.47
103048--103424
188
2.0
187
97
0
718
31
11
18
39
1.86
103510--103675
50
3.3
50
95
0
296
27
21
19
31
1.97
108683--109566
162
5.4
163
85
5
1149
28
17
15
38
1.90
108683--109566
327
2.7
329
86
4
1252
28
17
15
38
1.90
110883--111136
36
7.0
36
91
2
375
19
16
26
37
1.93
113343--113481
69
2.0
69
94
0
242
38
15
15
30
1.89
114420--114445
13
2.0
13
100
0
52
38
30
0
30
1.58
126725--126750
1
26.0
1
100
0
52
0
0
100
0
0.00
131274--131483
105
2.0
105
100
0
420
22
15
16
45
1.84
136095--136125
1
31.0
1
93
0
53
3
0
96
0
0.21
141189--141650
166
2.8
166
84
2
552
38
16
17
27
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
144112--144152
15
2.7
15
80
0
55
43
26
9
19
1.82
150947--150976
14
2.1
14
93
0
51
20
13
10
56
1.65
154188--154255
24
2.8
24
100
0
136
38
22
25
14
1.92
155704--155851
74
2.0
74
100
0
296
29
17
16
36
1.92
164803--164877
36
2.1
36
94
0
132
28
24
6
41
1.80
187523--187559
2
18.5
2
100
0
74
0
0
48
51
1.00
192548--192607
2
30.0
2
96
0
111
0
51
0
48
1.00
194525--195262
168
4.4
168
89
1
1086
32
18
18
30
1.95
195473--195503
7
4.4
7
91
0
53
25
41
32
0
1.56
199103--199154
15
3.1
17
78
13
54
32
15
11
40
1.83
199594--199618
11
2.3
11
100
0
50
0
0
24
76
0.80
203437--203602
87
1.9
87
89
0
260
25
21
16
36
1.94
206377--206519
35
4.1
35
91
0
214
30
23
14
32
1.94
219542--219574
17
1.9
17
93
0
57
30
12
18
39
1.87
220100--220142
2
21.5
2
100
0
86
0
48
0
51
1.00
222086--222155
36
1.9
36
82
0
86
18
30
15
35
1.92
242336--242376
2
20.5
2
100
0
82
0
48
0
51
1.00
245017--245052
16
2.3
16
85
4
56
8
0
88
2
0.59
258775--258839
33
2.0
33
93
0
112
47
3
16
32
1.62
259910--260050
59
2.4
59
93
0
246
34
13
11
41
1.80
262374--262424
25
2.0
25
92
0
84
41
15
5
37
1.72
277245--277297
21
2.5
21
90
6
81
37
22
16
22
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
278499--278947
225
2.0
224
99
0
880
38
16
10
33
1.84
284390--284976
172
3.5
163
79
6
638
28
24
14
32
1.94
284741--285511
278
2.8
280
92
1
1253
27
27
13
30
1.94
290942--290984
20
2.1
20
82
0
50
44
6
4
44
1.52
292205--292324
15
8.3
15
66
17
65
43
11
5
39
1.65
292272--292329
30
1.9
30
85
0
80
41
12
8
37
1.73
292307--292344
20
1.9
20
94
0
67
44
10
2
42
1.52
298133--298157
8
3.1
8
100
0
50
28
24
36
12
1.91
299410--299492
41
2.0
41
100
0
166
34
16
19
28
1.94
308052--308094
16
2.7
16
81
0
50
37
41
6
13
1.72
314021--314299
42
6.5
42
91
4
450
26
16
21
35
1.94
314021--314300
132
2.2
127
91
6
456
26
16
21
36
1.94
314021--314345
132
2.5
132
87
7
406
26
16
21
35
1.94
325052--325100
2
24.5
2
100
0
98
0
48
0
51
1.00
325324--325424
52
1.9
52
89
0
157
30
19
24
24
1.98
327629--327667
19
2.1
19
90
0
60
28
17
30
23
1.97
332964--333024
2
30.5
2
96
0
113
1
50
0
47
1.10
339389--339482
2
47.0
2
97
0
179
50
0
48
0
1.00
358722--358787
2
33.0
2
100
0
132
0
50
0
50
1.00
361160--361255
2
49.0
2
88
4
142
2
50
0
47
1.12
369666--369742
8
9.8
8
78
16
72
41
0
25
32
1.56
369665--369714
23
2.2
23
96
0
91
40
0
24
36
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
370527--370617
8
11.8
8
76
18
86
41
0
26
31
1.56
370527--370589
23
2.7
23
97
0
117
41
0
23
34
1.55
371402--371492
8
11.8
8
76
18
86
41
0
26
31
1.56
371402--371464
23
2.7
23
97
0
117
41
0
23
34
1.55
372277--372367
8
11.8
8
76
18
86
41
0
26
31
1.56
372277--372339
23
2.7
23
97
0
117
41
0
23
34
1.55
380228--380257
15
2.0
15
93
0
51
30
0
0
70
0.88
382655--382712
2
29.5
2
96
3
109
51
0
48
0
1.00
385382--385425
2
22.0
2
100
0
88
50
0
50
0
1.00
397367--397400
17
2.0
17
100
0
68
23
47
5
23
1.73
407501--407534
17
1.9
18
88
5
52
41
8
2
47
1.50
410019--410067
2
24.5
2
100
0
98
0
48
0
51
1.00
417761--418096
174
1.9
172
83
3
433
25
25
15
33
1.95
420998--421119
60
2.0
61
95
1
219
38
19
11
30
1.87
422803--422861
29
2.0
29
96
0
109
27
18
38
15
1.91
442949--443471
273
1.9
269
97
2
985
41
16
10
32
1.82
444626--444655
14
2.1
14
93
0
51
36
0
13
50
1.42
445012--445036
11
2.3
11
100
0
50
44
20
16
20
1.87
448652--448682
2
15.5
2
100
0
62
51
0
48
0
1.00
448900--448926
14
1.9
14
100
0
54
29
7
33
29
1.85
451509--451557
26
1.9
25
83
4
62
36
6
6
51
1.52
452366--452486
21
5.8
21
77
3
118
38
19
23
18
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
452382--452486
42
2.5
42
93
0
183
38
21
22
17
1.93
453529--453600
21
3.4
21
78
5
83
38
16
23
20
1.92
455345--455437
11
8.2
11
77
11
89
16
0
44
39
1.47
455345--455436
6
16.0
6
75
11
86
16
0
44
39
1.48
455345--455413
17
3.9
18
75
7
70
15
0
43
40
1.47
455349--455435
23
3.8
23
89
4
131
16
0
44
39
1.47
455354--455436
17
4.8
17
73
14
71
16
0
45
37
1.48
455436--455471
9
4.0
9
88
0
54
38
22
11
27
1.88
455473--455925
92
4.9
92
94
2
734
36
25
13
24
1.92
459871--459908
9
4.4
9
80
12
53
42
0
7
50
1.31

Tables:   1   2   3   4   5