Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: scaffold1024 Parameters: 2 7 7 80 10 50 500 Length: 1774716

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 509 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1168162--1168216
2
27.5
2
96
0
101
47
0
50
1
1.11
1233698--1233746
21
2.4
20
77
12
55
53
0
2
44
1.12
1238780--1238805
12
2.2
12
100
0
52
46
7
7
38
1.61
1243681--1243721
2
20.5
2
100
0
82
0
48
0
51
1.00
1246759--1246881
62
2.0
62
90
0
192
30
14
13
41
1.85
1253691--1253729
3
13.0
3
88
0
60
33
5
33
28
1.79
1261511--1261535
12
2.1
12
100
0
50
36
8
48
8
1.62
1261679--1261943
21
12.5
21
80
4
262
56
2
38
3
1.29
1261679--1261943
63
4.2
63
80
4
300
56
2
38
3
1.29
1261961--1262026
27
2.3
29
78
17
75
51
10
27
10
1.69
1280025--1280212
22
8.8
21
82
3
196
31
14
16
37
1.89
1280025--1280221
43
4.6
43
86
1
270
32
14
16
36
1.89
1280046--1280221
65
2.7
64
87
2
262
31
14
16
38
1.88
1280883--1281077
21
9.2
21
86
2
273
29
17
13
38
1.88
1280883--1281079
85
2.3
85
88
2
297
30
17
13
38
1.88
1280883--1281077
106
1.8
106
96
0
363
29
17
13
38
1.88
1280914--1281079
64
2.6
64
91
0
253
29
18
13
38
1.89
1285324--1285591
136
2.0
136
93
1
457
34
16
11
36
1.86
1297310--1297379
22
3.2
22
62
18
56
58
17
5
18
1.58
1297295--1297380
43
2.0
43
100
0
172
58
16
4
20
1.56
1299921--1299967
24
2.0
24
87
8
69
12
17
29
40
1.86
1301917--1302718
146
5.5
146
90
2
1197
29
21
18
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1301917--1302718
291
2.8
292
90
2
1231
29
21
18
29
1.97
1302730--1302764
4
8.8
4
87
0
52
31
25
42
0
1.55
1302726--1302765
12
3.3
12
89
0
62
35
25
40
0
1.56
1302723--1302765
8
5.4
8
85
0
59
37
25
37
0
1.56
1302723--1302764
16
2.6
16
96
0
75
35
26
38
0
1.57
1307148--1307203
21
2.7
21
81
15
71
48
19
12
19
1.80
1308630--1308687
21
2.8
21
81
5
64
18
15
20
44
1.86
1320389--1320444
25
2.2
25
79
14
62
37
8
3
50
1.51
1341438--1342349
180
5.1
180
93
0
1509
30
14
17
37
1.90
1344618--1344659
16
2.6
16
88
0
57
50
23
7
19
1.72
1353686--1353872
93
2.0
94
97
1
358
41
9
16
32
1.81
1359865--1359928
21
3.0
21
81
4
76
40
15
17
26
1.89
1360062--1360137
21
3.6
21
92
0
125
32
21
11
34
1.89
1360012--1360137
42
3.0
42
81
4
146
35
16
12
34
1.87
1360148--1360226
41
1.9
42
89
2
124
32
12
18
35
1.89
1360258--1360340
21
4.0
21
80
0
94
33
15
15
34
1.90
1360419--1360499
21
3.9
21
78
0
90
27
19
14
38
1.91
1360419--1360502
42
2.0
42
90
0
132
27
20
14
38
1.91
1360582--1360658
21
3.8
20
75
5
73
38
15
16
28
1.90
1360746--1360870
21
5.9
21
77
0
115
32
17
12
36
1.88
1360754--1360870
42
2.8
42
88
1
162
31
17
12
37
1.88
1360869--1361079
21
10.0
21
77
2
190
36
16
14
33
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1361169--1361248
42
1.9
42
92
0
133
27
17
16
38
1.91
1361164--1361252
21
4.2
21
83
0
115
26
15
14
42
1.86
1361277--1361318
21
2.0
21
100
0
84
33
23
28
14
1.94
1366370--1366421
24
2.2
24
100
0
104
17
15
23
44
1.86
1368449--1368505
18
3.1
18
80
14
62
52
8
1
36
1.43
1368718--1368866
15
9.4
15
69
18
79
46
12
3
37
1.58
1368823--1368857
18
1.9
18
94
0
61
54
5
0
40
1.24
1368718--1368945
98
2.4
98
87
4
313
45
11
5
37
1.63
1368904--1368970
32
2.1
32
82
0
80
46
7
8
37
1.64
1369171--1369214
20
2.2
20
91
0
70
40
13
4
40
1.65
1369833--1370577
177
4.2
177
86
3
935
33
25
15
24
1.95
1370343--1370384
19
2.2
19
86
0
57
40
33
4
21
1.74
1370351--1370390
19
2.1
19
90
0
62
37
37
2
22
1.68
1369833--1370681
354
2.4
352
81
5
888
33
24
16
25
1.95
1370715--1370752
6
6.3
6
88
11
60
18
50
31
0
1.47
1371532--1371573
19
2.2
19
95
0
75
42
19
9
28
1.82
1380984--1381017
17
1.9
18
94
5
61
5
20
0
73
1.04
1401050--1401130
42
2.0
41
94
0
135
40
13
19
24
1.88
1410301--1410332
16
2.0
16
100
0
64
6
25
25
43
1.77
1433642--1434104
164
2.8
164
94
0
793
18
24
21
36
1.95
1438251--1438284
16
2.2
16
90
10
54
5
44
0
50
1.26
1438899--1438924
12
2.2
12
100
0
52
69
0
7
23
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1465925--1466198
12
22.6
12
79
8
196
2
33
0
63
1.11
1465985--1466198
4
53.0
4
83
5
225
2
30
0
66
1.08
1475098--1475145
2
24.5
2
95
4
89
47
0
52
0
1.00
1503951--1503980
11
2.7
11
94
0
51
40
20
13
26
1.89
1513616--1513655
2
20.0
2
94
0
71
52
0
47
0
1.00
1522179--1522358
5
35.6
5
90
4
173
37
28
1
32
1.65
1527781--1527840
4
15.0
4
85
0
84
30
25
43
1
1.64
1527785--1527840
20
2.8
20
91
0
94
30
25
42
1
1.65
1528723--1528753
2
15.5
2
93
0
53
51
0
48
0
1.00
1530024--1530093
8
9.4
8
82
14
96
0
38
25
35
1.56
1530025--1530090
4
16.8
4
80
3
80
0
40
25
33
1.56
1535453--1535488
16
2.2
17
90
5
56
0
13
19
66
1.24
1537250--1537282
15
2.2
15
89
10
50
0
0
18
81
0.68
1537249--1537304
11
5.6
10
77
12
53
0
0
17
82
0.68
1537249--1537301
20
2.8
19
76
18
65
0
0
18
81
0.70
1537248--1537304
16
3.7
14
76
17
51
0
0
19
80
0.71
1541784--1541957
87
2.0
86
88
5
262
35
12
21
31
1.90
1542153--1542193
21
2.0
21
95
0
73
31
17
24
26
1.97
1542158--1542221
21
3.0
21
90
0
92
28
15
21
34
1.94
1544918--1544960
2
21.5
2
100
0
86
0
48
0
51
1.00
1549559--1549689
63
2.1
63
100
0
262
17
19
13
48
1.80
1552100--1552146
22
2.1
22
100
0
94
27
19
12
40
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1554486--1554533
2
24.0
2
100
0
96
50
0
50
0
1.00
1558113--1558161
2
24.5
2
100
0
98
0
48
0
51
1.00
1562194--1562238
11
4.1
11
85
0
63
42
35
13
8
1.75
1562196--1562241
22
2.1
22
91
0
74
47
30
13
8
1.72
1568543--1568651
2
54.5
2
90
0
173
54
0
44
0
1.06
1572207--1572258
20
2.5
20
82
11
61
1
1
21
75
1.00
1572207--1572279
34
2.2
34
83
11
89
1
2
21
73
1.03
1574123--1574180
4
14.8
4
92
3
100
27
25
46
0
1.53
1576171--1576207
15
2.5
15
91
4
58
0
0
18
81
0.70
1576171--1576207
12
3.1
12
96
0
65
0
0
18
81
0.70
1577105--1577138
3
11.3
3
93
0
59
64
0
0
35
0.94
1583268--1583315
2
24.0
2
100
0
96
50
0
50
0
1.00
1587753--1587805
22
2.4
22
83
0
70
39
11
28
20
1.87
1587810--1587838
11
2.6
11
100
0
58
27
31
10
31
1.90
1587870--1587923
11
4.9
11
90
0
90
25
33
11
29
1.91
1594734--1595027
135
2.2
135
84
6
364
25
25
21
28
1.99
1595037--1595380
166
2.1
166
88
3
512
31
16
15
37
1.90
1600269--1600322
20
2.8
19
75
8
65
33
11
18
37
1.86
1600494--1600534
11
3.7
11
93
0
73
29
9
36
24
1.87
1600544--1600573
11
2.7
11
89
0
51
26
30
10
33
1.89
1600603--1600654
22
2.4
22
84
12
72
26
21
9
42
1.83
1601016--1601062
2
23.5
2
100
0
94
0
48
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1603017--1603045
11
2.6
11
100
0
58
31
10
31
27
1.90
1603062--1603102
11
3.7
11
80
0
55
21
26
9
41
1.84
1603111--1603142
11
2.9
11
95
0
55
34
9
28
28
1.88
1603147--1603186
21
1.9
21
94
0
71
27
20
10
42
1.83
1603147--1603186
11
3.7
11
86
6
64
27
20
10
42
1.83
1607398--1607441
2
22.0
2
100
0
88
0
50
0
50
1.00
1620410--1620458
1
49.0
1
81
0
53
2
0
8
89
0.55
1629231--1629295
4
16.2
4
87
6
87
3
46
24
26
1.67
1629293--1629357
4
16.8
4
90
6
98
0
23
23
53
1.46
1631055--1631531
112
4.3
112
81
2
519
33
20
15
29
1.94

Tables:   1   2   3   4   5