Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold1024
Parameters: 2 7 7 80 10 50 500
Length:  1774716

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 509 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1631055--1631531
28
17.0
28
80
2
465
33
20
15
29
1.94
1640889--1641179
104
2.9
100
87
3
388
35
6
17
40
1.76
1643677--1643705
10
2.9
10
100
0
58
0
48
10
41
1.37
1655221--1655275
24
2.2
25
83
9
67
14
20
27
38
1.91
1656078--1656108
11
2.7
11
95
5
53
58
0
0
41
0.98
1664213--1664259
2
23.5
2
100
0
94
48
0
51
0
1.00
1665296--1665324
13
2.3
13
94
5
51
34
0
3
62
1.12
1666997--1667048
2
26.0
2
100
0
104
50
0
50
0
1.00
1668439--1668479
2
20.5
2
100
0
82
0
48
0
51
1.00
1673040--1673067
14
2.0
14
100
0
56
14
57
0
28
1.38
1675436--1675517
4
20.0
4
69
18
53
24
3
20
51
1.64
1682780--1682810
2
16.0
2
93
6
55
48
0
51
0
1.00
1688166--1688208
4
10.8
4
100
0
86
0
25
0
74
0.82
1689016--1689054
4
9.8
4
100
0
78
0
25
0
74
0.82
1694309--1694346
20
1.9
20
88
0
58
31
15
7
44
1.75
1706222--1706286
21
3.1
21
76
14
71
46
15
15
23
1.83
1706421--1706523
42
2.5
42
90
0
161
39
14
15
30
1.87
1706421--1706510
21
4.3
21
92
0
153
40
14
15
30
1.87
1706598--1706670
21
3.5
21
79
3
67
28
17
13
39
1.88
1708116--1708173
21
2.8
20
79
7
62
27
13
18
39
1.89
1719198--1719236
11
3.6
11
82
6
53
38
10
20
30
1.86
1719271--1719323
11
4.8
11
80
0
61
39
11
26
22
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1719328--1719356
11
2.6
11
100
0
58
27
31
10
31
1.90
1719388--1719452
11
5.9
11
96
0
112
27
32
9
30
1.88
1719551--1719588
14
2.7
14
95
0
67
89
10
0
0
0.49
1719551--1719587
19
2.0
18
94
5
65
91
8
0
0
0.41
1720992--1721205
112
1.9
112
97
0
401
28
18
19
33
1.95
1728533--1728586
22
2.5
22
81
0
63
29
24
22
24
1.99
1730071--1730100
7
4.3
7
91
0
51
43
0
3
53
1.17

Tables:   1   2   3   4   5

The End!