Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: scaffold425 Parameters: 2 7 7 80 10 50 500 Length: 1118264

Tables:   1   2   3   

This is table  1  of  3  ( 355 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
326--372
2
23.5
2
100
0
94
48
0
51
0
1.00
619--656
2
19.0
2
100
0
76
50
0
50
0
1.00
10538--10898
181
2.0
180
99
0
704
33
13
10
41
1.80
36965--37051
14
5.6
14
71
21
66
31
18
21
28
1.97
36970--37088
51
2.3
51
88
2
168
36
16
21
26
1.94
37030--37125
37
2.6
37
80
3
113
37
16
20
25
1.93
37105--37139
14
2.5
14
95
0
61
28
22
20
28
1.98
37072--37176
51
2.1
51
85
3
140
38
17
20
24
1.93
36982--37181
88
2.3
88
95
0
373
37
16
22
24
1.93
39604--39642
14
2.9
13
85
7
60
82
15
0
2
0.79
44255--44296
5
8.4
5
84
10
50
0
0
16
83
0.65
44255--44296
20
2.1
20
90
0
66
0
0
16
83
0.65
44450--44482
17
1.9
17
93
0
57
27
0
12
60
1.32
55908--55933
5
5.2
5
100
0
52
0
38
23
38
1.55
57713--57737
2
12.5
2
100
0
50
52
0
48
0
1.00
60716--60746
16
1.9
16
93
0
53
67
6
6
19
1.35
81485--81578
2
47.0
2
95
0
170
52
0
47
0
1.00
82751--82786
2
18.5
2
88
5
56
47
2
0
50
1.15
89213--89496
135
2.1
135
81
5
326
27
23
20
29
1.98
89568--89941
164
2.3
165
87
0
536
32
17
13
36
1.89
97869--97898
15
2.0
15
100
0
60
60
20
6
13
1.55
99405--99457
22
2.4
22
83
0
70
39
11
28
20
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
99462--99486
11
2.3
11
100
0
50
24
36
8
32
1.84
99526--99553
11
2.5
11
100
0
56
32
35
10
21
1.88
100897--100970
2
37.0
2
97
0
139
48
0
51
0
1.00
124797--124828
4
8.0
4
92
0
55
25
3
0
71
1.00
133292--133324
14
2.4
14
94
0
57
30
24
24
21
1.99
133253--133359
51
2.1
50
84
6
135
24
22
19
33
1.97
133304--133398
37
2.6
36
83
6
111
23
22
20
34
1.96
133378--133410
14
2.4
14
94
0
57
27
24
21
27
1.99
133251--133417
88
1.9
88
93
0
289
23
22
17
35
1.95
145208--145232
2
12.5
2
100
0
50
0
52
0
48
1.00
150658--150698
15
2.7
15
84
0
64
41
4
9
43
1.59
154374--154403
15
2.1
14
93
6
51
43
13
0
43
1.43
160778--160813
2
18.0
2
100
0
72
50
0
50
0
1.00
166662--166701
19
2.0
19
85
9
53
77
2
7
12
1.07
178888--178913
2
13.0
2
100
0
52
50
0
0
50
1.00
186852--186877
13
2.0
13
100
0
52
46
7
23
23
1.78
187556--187580
12
2.1
12
100
0
50
44
16
24
16
1.86
193743--193784
21
2.0
21
100
0
84
23
23
19
33
1.97
200130--200168
14
2.8
14
88
0
60
38
2
5
53
1.37
201005--201420
164
2.5
164
86
4
566
25
25
17
32
1.96
205794--205995
110
1.8
111
90
1
325
38
15
11
34
1.84
212707--212735
12
2.3
13
94
5
51
20
17
24
37
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
212922--212946
12
2.1
12
100
0
50
52
24
16
8
1.70
226829--227184
166
2.2
166
83
2
441
26
22
16
33
1.95
229015--229046
12
2.7
12
95
0
55
37
25
37
0
1.56
230570--230631
12
4.8
12
72
16
52
24
1
16
58
1.47
230557--230663
40
2.6
40
91
1
160
29
0
14
54
1.47
248651--248720
36
1.9
37
91
2
115
27
24
20
28
1.99
251747--251828
36
2.3
36
91
0
128
19
25
29
25
1.99
251412--252258
369
2.3
371
94
0
1500
24
24
23
27
2.00
252116--252197
36
2.3
36
89
0
119
20
25
28
25
1.99
252365--252447
36
2.3
36
89
0
121
20
25
30
24
1.99
255773--255847
32
2.3
33
95
2
134
25
30
21
22
1.99
255770--255861
33
2.9
32
88
6
116
26
27
20
26
1.99
260078--260103
12
2.2
12
100
0
52
26
0
23
50
1.50
261062--261093
2
16.0
2
100
0
64
50
0
50
0
1.00
261476--261513
11
3.8
10
86
13
60
31
0
0
68
0.90
261476--261513
20
1.9
20
89
10
60
31
0
0
68
0.90
265276--265317
2
21.0
2
100
0
84
0
50
0
50
1.00
265561--265690
5
26.4
5
76
12
117
6
16
19
57
1.61
265561--265690
20
6.3
20
83
5
154
6
16
19
57
1.61
269722--269747
10
2.6
10
100
0
52
46
0
19
34
1.50
283359--283410
2
26.0
2
100
0
104
50
0
50
0
1.00
283730--283754
2
12.5
2
100
0
50
48
0
52
0
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
285034--285068
2
17.5
2
100
0
70
51
0
0
48
1.00
286005--286056
21
2.5
21
83
0
59
30
15
19
34
1.93
291397--291622
114
2.0
115
80
6
262
39
14
21
24
1.90
294272--294361
30
3.0
30
93
3
146
25
26
25
22
2.00
295759--295883
54
2.3
54
84
0
169
25
16
20
38
1.92
311230--311262
15
2.2
15
100
0
66
81
18
0
0
0.68
312544--312751
2
103.5
2
79
4
159
52
6
37
2
1.41
320738--320771
16
2.2
16
89
5
52
20
5
14
58
1.57
320993--321359
144
2.5
144
95
0
664
51
11
9
27
1.68
326621--326648
14
2.0
14
100
0
56
42
35
14
7
1.73
345348--345372
10
2.5
10
100
0
50
56
24
0
20
1.43
346552--346586
18
1.9
18
88
0
52
60
8
0
31
1.27
354505--354557
22
2.4
22
83
0
70
39
11
28
20
1.87
355637--355674
2
19.0
2
100
0
76
50
0
50
0
1.00
359908--359991
43
1.9
44
90
7
136
34
13
9
42
1.76
360838--360888
11
4.4
11
76
13
57
25
21
11
41
1.87
380016--380057
21
2.0
21
90
0
66
28
23
30
16
1.96
389227--389346
60
2.0
60
95
0
213
23
8
20
47
1.77
392495--392569
31
2.4
32
90
2
125
33
25
14
26
1.94
392669--393109
177
2.5
177
93
0
731
29
13
19
36
1.90
394334--394359
13
2.0
13
100
0
52
53
0
46
0
1.00
396976--397021
17
2.7
18
80
10
51
2
34
2
60
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
400019--400050
1
32.0
1
93
0
55
96
3
0
0
0.20
406216--406283
2
34.5
2
94
2
120
50
0
0
50
1.00
414389--414422
2
17.0
2
93
0
59
47
0
2
50
1.16
417290--417330
11
3.6
12
83
9
59
9
9
34
46
1.70
417290--417336
22
2.1
23
92
4
78
10
10
36
42
1.74
423021--423056
11
3.3
11
96
0
63
41
19
8
30
1.81
460249--460355
21
5.1
21
88
4
137
29
20
5
43
1.74
460249--460349
42
2.4
41
90
1
157
29
21
4
43
1.74
460396--460489
21
4.2
21
80
17
109
43
6
23
26
1.77
460396--460467
26
3.0
25
84
11
89
43
5
23
27
1.76
460789--460821
11
2.8
12
86
9
50
72
3
0
24
0.98
462371--462414
16
2.7
16
92
3
70
59
0
0
40
0.98
463128--463161
12
3.0
11
87
8
50
14
0
0
85
0.60
464045--464098
27
2.1
26
90
10
85
25
11
18
44
1.83
464611--464687
21
3.6
21
91
3
127
36
36
9
18
1.82
464611--464685
11
7.0
11
87
6
118
36
36
9
18
1.83
466866--466946
2
40.5
2
97
0
153
1
49
0
49
1.08
467873--468027
21
7.3
21
84
3
204
34
13
18
32
1.90
468849--469007
21
7.5
22
76
12
163
18
9
33
38
1.83
468849--469007
11
15.0
11
77
12
163
18
9
33
38
1.83
470343--470383
21
2.0
21
90
0
64
34
14
7
43
1.73
470481--470526
21
2.2
21
88
3
67
34
21
4
39
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
471632--471743
53
2.1
53
98
0
215
20
19
16
43
1.88
471685--471828
69
2.1
69
98
0
279
21
15
13
50
1.78
471807--471836
3
9.7
3
92
7
51
30
0
0
70
0.88
471807--471833
13
2.1
13
100
0
54
29
0
0
70
0.88
471807--471837
16
1.9
16
100
0
62
29
0
0
70
0.87
499140--499392
139
1.8
139
85
3
357
30
20
18
30
1.97
501315--501370
29
1.9
29
96
0
103
21
25
12
41
1.88
515852--515948
21
4.7
21
87
2
133
37
21
13
27
1.91
516133--516161
15
1.9
15
100
0
58
41
27
10
20
1.85
516187--516229
21
2.0
21
95
0
77
44
18
9
27
1.80

Tables:   1   2   3