Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Sequence: scaffold425
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1118264
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.29
Warning! 137083 characters in sequence are not A, C, G, or T
File 4 of 3
Found at i:837282 original size:47 final size:47
Alignment explanation
Indices: 837183--837327 Score: 274
Period size: 47 Copynumber: 3.1 Consensus size: 47
837173 AGATATCCCT
*
837183 CTTTTTTGGCGTCTATGACTTGGATAACCTTGATGGTATATCCGTAA
1 CTTTTTTGGCGTCTATGACTTGGATAACCTTGACGGTATATCCGTAA
837230 CTTTTTTGGCGT-TATGACTTGGATAACCTTGACGGTATATCCGTAA
1 CTTTTTTGGCGTCTATGACTTGGATAACCTTGACGGTATATCCGTAA
837276 CTTTTTTGGCGTCTATGACTTGGATAACCTTGACGGTATATCCGTAA
1 CTTTTTTGGCGTCTATGACTTGGATAACCTTGACGGTATATCCGTAA
837323 CTTTT
1 CTTTT
837328 CAGGAGGNTA
Statistics
Matches: 96, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
46 45 0.47
47 51 0.53
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.41
Consensus pattern (47 bp):
CTTTTTTGGCGTCTATGACTTGGATAACCTTGACGGTATATCCGTAA
Found at i:838570 original size:47 final size:47
Alignment explanation
Indices: 838511--838750 Score: 471
Period size: 47 Copynumber: 5.1 Consensus size: 47
838501 AGATATCCCT
*
838511 CTTTTTTGGCGTCTATGACTTGGATAACCTTGATGGTATATCCGTAA
1 CTTTTTTGGCGTCTATGACTTGGATAACCTTGACGGTATATCCGTAA
838558 CTTTTTTGGCGTCTATGACTTGGATAACCTTGACGGTATATCCGTAA
1 CTTTTTTGGCGTCTATGACTTGGATAACCTTGACGGTATATCCGTAA
838605 CTTTTTTGGCGTCTATGACTTGGATAACCTTGACGGTATATCCGTAA
1 CTTTTTTGGCGTCTATGACTTGGATAACCTTGACGGTATATCCGTAA
838652 CTTTTTTGGCGTCTATGACTTGGATAACCTTGACGGTATATCCGTAA
1 CTTTTTTGGCGTCTATGACTTGGATAACCTTGACGGTATATCCGTAA
838699 CTTTTTTGGCGTCTATGACTTGGATAACCTTGACGGTATATCCGTAA
1 CTTTTTTGGCGTCTATGACTTGGATAACCTTGACGGTATATCCGTAA
838746 CTTTT
1 CTTTT
838751 CAGGAGGGCT
Statistics
Matches: 192, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 192 1.00
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.40
Consensus pattern (47 bp):
CTTTTTTGGCGTCTATGACTTGGATAACCTTGACGGTATATCCGTAA
Found at i:842908 original size:21 final size:22
Alignment explanation
Indices: 842860--842909 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 22
842850 ATGAAAAATA
*
842860 AATTGTTTTTTTTCTTTGTTTT
1 AATTGTTTTTTCTCTTTGTTTT
*
842882 -AGTGTTTTTTCTC-TTGTTTT
1 AATTGTTTTTTCTCTTTGTTTT
842902 AATTGTTT
1 AATTGTTT
842910 ACAAATTTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 7 0.29
21 17 0.71
ACGTcount: A:0.10, C:0.06, G:0.12, T:0.72
Consensus pattern (22 bp):
AATTGTTTTTTCTCTTTGTTTT
Found at i:846759 original size:18 final size:18
Alignment explanation
Indices: 846738--846780 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
846728 GGCTTTGCTC
846738 CAAATTTTGGCCTGACCT
1 CAAATTTTGGCCTGACCT
** *
846756 CAAAAATTGGCCTGGCCT
1 CAAATTTTGGCCTGACCT
*
846774 TAAATTT
1 CAAATTT
846781 GGGCTCTACA
Statistics
Matches: 19, Mismatches: 6, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (18 bp):
CAAATTTTGGCCTGACCT
Found at i:853105 original size:2 final size:2
Alignment explanation
Indices: 853098--853139 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
853088 CTTTCGGAGC
853098 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
853140 TTTCCAAATG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:859272 original size:21 final size:21
Alignment explanation
Indices: 859246--859383 Score: 172
Period size: 21 Copynumber: 6.6 Consensus size: 21
859236 AACAACTGTT
* *
859246 CAACACACTTCATCAGTTGAG
1 CAACACACTCCATCAGTCGAG
859267 CAACACACTCCGA-CAGTCGAG
1 CAACACACTCC-ATCAGTCGAG
* *
859288 CAACATACTCCTTCAGTCGAG
1 CAACACACTCCATCAGTCGAG
*
859309 CAACACACTCCAGCAGTCGAG
1 CAACACACTCCATCAGTCGAG
*
859330 CAGCACACTCCGA-CAGTCGAG
1 CAACACACTCC-ATCAGTCGAG
* *
859351 CAACATACACCATCAGTCGAG
1 CAACACACTCCATCAGTCGAG
859372 CAACACACTCCA
1 CAACACACTCCA
859384 GCACCACAAA
Statistics
Matches: 100, Mismatches: 13, Indels: 8
0.83 0.11 0.07
Matches are distributed among these distances:
20 1 0.01
21 97 0.97
22 2 0.02
ACGTcount: A:0.33, C:0.36, G:0.16, T:0.14
Consensus pattern (21 bp):
CAACACACTCCATCAGTCGAG
Found at i:859345 original size:63 final size:63
Alignment explanation
Indices: 859246--859386 Score: 228
Period size: 63 Copynumber: 2.2 Consensus size: 63
859236 AACAACTGTT
* * * * *
859246 CAACACACTTCATCAGTTGAGCAACACACTCCGACAGTCGAGCAACATACTCCTTCAGTCGAG
1 CAACACACTCCAGCAGTCGAGCAACACACTCCGACAGTCGAGCAACATACACCATCAGTCGAG
*
859309 CAACACACTCCAGCAGTCGAGCAGCACACTCCGACAGTCGAGCAACATACACCATCAGTCGAG
1 CAACACACTCCAGCAGTCGAGCAACACACTCCGACAGTCGAGCAACATACACCATCAGTCGAG
859372 CAACACACTCCAGCA
1 CAACACACTCCAGCA
859387 CCACAAAATC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
63 72 1.00
ACGTcount: A:0.33, C:0.36, G:0.16, T:0.14
Consensus pattern (63 bp):
CAACACACTCCAGCAGTCGAGCAACACACTCCGACAGTCGAGCAACATACACCATCAGTCGAG
Found at i:859602 original size:18 final size:18
Alignment explanation
Indices: 859581--859624 Score: 88
Period size: 18 Copynumber: 2.4 Consensus size: 18
859571 CAACAAAACT
859581 GACAACAACTACACCGAC
1 GACAACAACTACACCGAC
859599 GACAACAACTACACCGAC
1 GACAACAACTACACCGAC
859617 GACAACAA
1 GACAACAA
859625 AACCGACAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.48, C:0.36, G:0.11, T:0.05
Consensus pattern (18 bp):
GACAACAACTACACCGAC
Found at i:859603 original size:15 final size:15
Alignment explanation
Indices: 859567--859709 Score: 94
Period size: 15 Copynumber: 9.5 Consensus size: 15
859557 AACAATGTCC
* * *
859567 ACAACAACAAAACTG
1 ACAACAACTACACCG
859582 ACAACAACTACACCGACG
1 ACAACAACTACA-C--CG
859600 ACAACAACTACACCG
1 ACAACAACTACACCG
* * *
859615 ACGACAACAAAACCG
1 ACAACAACTACACCG
859630 ---ACAACTACACCG
1 ACAACAACTACACCG
***
859642 ACAACAACTATGTCG
1 ACAACAACTACACCG
**
859657 ACAACAACTATGCCG
1 ACAACAACTACACCG
* *
859672 ACAACAACAAAACCG
1 ACAACAACTACACCG
* *
859687 ACAACAACTTCACAG
1 ACAACAACTACACCG
*
859702 ACGACAAC
1 ACAACAAC
859710 AACAACAATA
Statistics
Matches: 102, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
12 10 0.10
15 77 0.75
16 1 0.01
17 1 0.01
18 13 0.13
ACGTcount: A:0.48, C:0.34, G:0.10, T:0.08
Consensus pattern (15 bp):
ACAACAACTACACCG
Found at i:859632 original size:30 final size:30
Alignment explanation
Indices: 859598--859711 Score: 117
Period size: 30 Copynumber: 3.9 Consensus size: 30
859588 ACTACACCGA
*
859598 CGACAACAACTACACCGACGACAACAAAAC
1 CGACAACAACTACACCGACAACAACAAAAC
* ***
859628 CG---ACAACTACACCGACAACAACTATGT
1 CGACAACAACTACACCGACAACAACAAAAC
**
859655 CGACAACAACTATGCCGACAACAACAAAAC
1 CGACAACAACTACACCGACAACAACAAAAC
* * *
859685 CGACAACAACTTCACAGACGACAACAA
1 CGACAACAACTACACCGACAACAACAA
859712 CAACAATACC
Statistics
Matches: 65, Mismatches: 16, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
27 22 0.34
30 43 0.66
ACGTcount: A:0.47, C:0.34, G:0.11, T:0.08
Consensus pattern (30 bp):
CGACAACAACTACACCGACAACAACAAAAC
Found at i:859639 original size:27 final size:27
Alignment explanation
Indices: 859603--859691 Score: 97
Period size: 27 Copynumber: 3.2 Consensus size: 27
859593 ACCGACGACA
*
859603 ACAACTACACCGACGACAACAAAACCG
1 ACAACTACACCGACAACAACAAAACCG
* ***
859630 ACAACTACACCGACAACAACTATGTCG
1 ACAACTACACCGACAACAACAAAACCG
*
859657 ACAACAACTATGCCGACAACAACAAAACCG
1 ACAACTAC-A--CCGACAACAACAAAACCG
859687 ACAAC
1 ACAAC
859692 AACTTCACAG
Statistics
Matches: 49, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
27 29 0.59
28 1 0.02
30 19 0.39
ACGTcount: A:0.47, C:0.35, G:0.10, T:0.08
Consensus pattern (27 bp):
ACAACTACACCGACAACAACAAAACCG
Found at i:859693 original size:18 final size:18
Alignment explanation
Indices: 859672--859734 Score: 65
Period size: 18 Copynumber: 3.5 Consensus size: 18
859662 AACTATGCCG
859672 ACAACAACAAAACCGACA
1 ACAACAACAAAACCGACA
** *
859690 ACAACTTCACAGA-CGACA
1 ACAACAACA-AAACCGACA
*
859708 ACAACAACAATACCGACA
1 ACAACAACAAAACCGACA
*
859726 ACGACAACA
1 ACAACAACA
859735 GAGCCCCCAG
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
17 2 0.06
18 32 0.89
19 2 0.06
ACGTcount: A:0.54, C:0.33, G:0.08, T:0.05
Consensus pattern (18 bp):
ACAACAACAAAACCGACA
Found at i:865066 original size:20 final size:20
Alignment explanation
Indices: 865041--865081 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
865031 GGTCATACAA
*
865041 AGTGCACAGTTGGTTTAGTT
1 AGTGCACAGTTGGTTAAGTT
*
865061 AGTGCACAGTTTGTTAAGTT
1 AGTGCACAGTTGGTTAAGTT
865081 A
1 A
865082 TACCTAACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.24, C:0.10, G:0.27, T:0.39
Consensus pattern (20 bp):
AGTGCACAGTTGGTTAAGTT
Found at i:867621 original size:21 final size:21
Alignment explanation
Indices: 867597--867704 Score: 147
Period size: 21 Copynumber: 5.4 Consensus size: 21
867587 TAGTTGTCGC
867597 ATGAGTTGTTGTCGTTGGTTT
1 ATGAGTTGTTGTCGTTGGTTT
867618 ATGAGTTGTTGTCG-T--TTT
1 ATGAGTTGTTGTCGTTGGTTT
867636 ATGAGTTGTTGTCGTTGGTTT
1 ATGAGTTGTTGTCGTTGGTTT
* *
867657 ATGAGTTGTTGTTGTTGTTTT
1 ATGAGTTGTTGTCGTTGGTTT
*
867678 ATGAGTTG-TG--GTTGGTAT
1 ATGAGTTGTTGTCGTTGGTTT
867696 ATGAGTTGT
1 ATGAGTTGT
867705 GGGATGCGGC
Statistics
Matches: 79, Mismatches: 4, Indels: 10
0.85 0.04 0.11
Matches are distributed among these distances:
18 31 0.39
19 1 0.01
20 3 0.04
21 44 0.56
ACGTcount: A:0.12, C:0.03, G:0.32, T:0.53
Consensus pattern (21 bp):
ATGAGTTGTTGTCGTTGGTTT
Found at i:867626 original size:39 final size:39
Alignment explanation
Indices: 867583--867671 Score: 133
Period size: 39 Copynumber: 2.3 Consensus size: 39
867573 TGTTAATTTT
*
867583 GTTGTAGTTGTCGCATGAGTTGTTGTCGTTGGTTTATGA
1 GTTGTTGTTGTCGCATGAGTTGTTGTCGTTGGTTTATGA
* ***
867622 GTTGTTGTCGTTTTATGAGTTGTTGTCGTTGGTTTATGA
1 GTTGTTGTTGTCGCATGAGTTGTTGTCGTTGGTTTATGA
867661 GTTGTTGTTGT
1 GTTGTTGTTGT
867672 TGTTTTATGA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.10, C:0.06, G:0.33, T:0.52
Consensus pattern (39 bp):
GTTGTTGTTGTCGCATGAGTTGTTGTCGTTGGTTTATGA
Found at i:867686 original size:39 final size:40
Alignment explanation
Indices: 867603--867704 Score: 131
Period size: 39 Copynumber: 2.6 Consensus size: 40
867593 TCGCATGAGT
867603 TGTTGTCGTTGGTTTATGA---GTTGTTGTCGTTTTATGA
1 TGTTGTCGTTGGTTTATGAGTTGTTGTTGTCGTTTTATGA
*
867640 GTTGTTGTCGTTGGTTTATGAGTTGTTGTTGTTGTTTTATGA
1 --TGTTGTCGTTGGTTTATGAGTTGTTGTTGTCGTTTTATGA
* *
867682 -GTTGTGGTTGGTATATGAGTTGT
1 TGTTGTCGTTGGTTTATGAGTTGT
867705 GGGATGCGGC
Statistics
Matches: 57, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
39 40 0.70
42 17 0.30
ACGTcount: A:0.11, C:0.03, G:0.32, T:0.54
Consensus pattern (40 bp):
TGTTGTCGTTGGTTTATGAGTTGTTGTTGTCGTTTTATGA
Found at i:867691 original size:18 final size:18
Alignment explanation
Indices: 867604--867706 Score: 98
Period size: 18 Copynumber: 5.4 Consensus size: 18
867594 CGCATGAGTT
*
867604 GTTGTCGTTGGTTTATGA
1 GTTGTGGTTGGTTTATGA
* * *
867622 GTTGTTGTCGTTTTATGA
1 GTTGTGGTTGGTTTATGA
867640 GTTGTTGTCGTTGGTTTATGA
1 GTTG-TG--GTTGGTTTATGA
*
867661 GTTGTTGTTGTTGTTTTATGA
1 GTTG-TG--GTTGGTTTATGA
*
867682 GTTGTGGTTGGTATATGA
1 GTTGTGGTTGGTTTATGA
867700 GTTGTGG
1 GTTGTGG
867707 GATGCGGCTT
Statistics
Matches: 72, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
18 36 0.50
19 1 0.01
20 2 0.03
21 33 0.46
ACGTcount: A:0.11, C:0.03, G:0.34, T:0.52
Consensus pattern (18 bp):
GTTGTGGTTGGTTTATGA
Found at i:867799 original size:21 final size:21
Alignment explanation
Indices: 867775--867851 Score: 127
Period size: 21 Copynumber: 3.7 Consensus size: 21
867765 TGTCTTGTGG
867775 GTTGTTGTTGTTGGTTTATGA
1 GTTGTTGTTGTTGGTTTATGA
867796 GTTGTTGTTGTTGGTTTATGA
1 GTTGTTGTTGTTGGTTTATGA
* * *
867817 GTTGTTGTCGTAGGTTTGTGA
1 GTTGTTGTTGTTGGTTTATGA
867838 GTTGTTGTTGTTGG
1 GTTGTTGTTGTTGG
867852 CATTCCTGTA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 51 1.00
ACGTcount: A:0.08, C:0.01, G:0.36, T:0.55
Consensus pattern (21 bp):
GTTGTTGTTGTTGGTTTATGA
Found at i:868039 original size:21 final size:22
Alignment explanation
Indices: 868015--868055 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
868005 AATAACATCA
868015 ATTAAT-TACATAAATGATTAG
1 ATTAATCTACATAAATGATTAG
* *
868036 ATTAATCTACGTAATTGATT
1 ATTAATCTACATAAATGATT
868056 GGTAACCTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.41
Consensus pattern (22 bp):
ATTAATCTACATAAATGATTAG
Found at i:868630 original size:2 final size:2
Alignment explanation
Indices: 868623--868684 Score: 124
Period size: 2 Copynumber: 31.0 Consensus size: 2
868613 AATATTTAAT
868623 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
868665 TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC
868685 ACCTCATCAT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 60 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:869726 original size:34 final size:34
Alignment explanation
Indices: 869683--869777 Score: 163
Period size: 34 Copynumber: 2.8 Consensus size: 34
869673 TTCGATGTGA
869683 ATATTTTAGTCCTGGCTTGACCCATTAACCTTCG
1 ATATTTTAGTCCTGGCTTGACCCATTAACCTTCG
*
869717 ATATTTTAGTCCTGGCTTGACCCATTAACCTTTG
1 ATATTTTAGTCCTGGCTTGACCCATTAACCTTCG
* *
869751 ATATGTTAGTCCTGGATTGACCCATTA
1 ATATTTTAGTCCTGGCTTGACCCATTA
869778 GTCATCGTCC
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 58 1.00
ACGTcount: A:0.22, C:0.23, G:0.16, T:0.39
Consensus pattern (34 bp):
ATATTTTAGTCCTGGCTTGACCCATTAACCTTCG
Found at i:886440 original size:17 final size:17
Alignment explanation
Indices: 886418--886451 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
886408 TCAAAGGTTT
886418 GAATTTAATATAACAAA
1 GAATTTAATATAACAAA
**
886435 GAATTTTTTATAACAAA
1 GAATTTAATATAACAAA
886452 AATAAATTGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.35
Consensus pattern (17 bp):
GAATTTAATATAACAAA
Found at i:891762 original size:2 final size:2
Alignment explanation
Indices: 891755--891792 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
891745 TTAGAGCTAG
891755 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
891793 ATTTATGAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:892395 original size:2 final size:2
Alignment explanation
Indices: 892388--892427 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
892378 GGTAGATATA
892388 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
892428 TTTCATAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:893025 original size:2 final size:2
Alignment explanation
Indices: 893018--893060 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
893008 CACCTGTCGA
893018 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
893060 A
1 A
893061 ATGTTTATGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:893774 original size:25 final size:26
Alignment explanation
Indices: 893746--893845 Score: 96
Period size: 25 Copynumber: 3.7 Consensus size: 26
893736 GTCTCTATTA
*
893746 TTTTTGATTTTA-TTTTATCTGCTTC
1 TTTTTTATTTTAGTTTTATCTGCTTC
* * *
893771 TTTTTTATTTTAGTTTTACAAATATTCTATTT
1 TTTTTTATTTTAGTTTT----ATCTGC--TTC
893803 TTTTTTATTTTA-TTTTATCTGCTTC
1 TTTTTTATTTTAGTTTTATCTGCTTC
893828 TTTTTTATTTTAGTTTTA
1 TTTTTTATTTTAGTTTTA
893846 CAAATATTCT
Statistics
Matches: 60, Mismatches: 7, Indels: 15
0.73 0.09 0.18
Matches are distributed among these distances:
25 25 0.42
26 9 0.15
27 4 0.07
30 4 0.07
31 4 0.07
32 14 0.23
ACGTcount: A:0.17, C:0.08, G:0.05, T:0.70
Consensus pattern (26 bp):
TTTTTTATTTTAGTTTTATCTGCTTC
Found at i:893798 original size:27 final size:27
Alignment explanation
Indices: 893768--893861 Score: 84
Period size: 27 Copynumber: 3.4 Consensus size: 27
893758 TTTTATCTGC
893768 TTCTTTTTTATTTTAGTTTTACAAATA
1 TTCTTTTTTATTTTAGTTTTACAAATA
* ** *
893795 TTCTATTTTT-TTTTA-TTTTATTTTATCTGC
1 TTCT-TTTTTATTTTAGTTTTA---CAAAT-A
893825 TTCTTTTTTATTTTAGTTTTACAAATA
1 TTCTTTTTTATTTTAGTTTTACAAATA
*
893852 TTCTATTTTA
1 TTCTTTTTTA
893862 ATATGGGTTT
Statistics
Matches: 51, Mismatches: 9, Indels: 14
0.69 0.12 0.19
Matches are distributed among these distances:
26 5 0.10
27 18 0.35
28 7 0.14
29 7 0.14
30 9 0.18
31 5 0.10
ACGTcount: A:0.21, C:0.09, G:0.03, T:0.67
Consensus pattern (27 bp):
TTCTTTTTTATTTTAGTTTTACAAATA
Found at i:893807 original size:57 final size:57
Alignment explanation
Indices: 893739--893860 Score: 226
Period size: 57 Copynumber: 2.1 Consensus size: 57
893729 TGATGAAGTC
*
893739 TCTATTATTTTTGATTTTATTTTATCTGCTTCTTTTTTATTTTAGTTTTACAAATAT
1 TCTATTTTTTTTGATTTTATTTTATCTGCTTCTTTTTTATTTTAGTTTTACAAATAT
*
893796 TCTATTTTTTTTTATTTTATTTTATCTGCTTCTTTTTTATTTTAGTTTTACAAATAT
1 TCTATTTTTTTTGATTTTATTTTATCTGCTTCTTTTTTATTTTAGTTTTACAAATAT
893853 TCTATTTT
1 TCTATTTT
893861 AATATGGGTT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 63 1.00
ACGTcount: A:0.20, C:0.09, G:0.04, T:0.67
Consensus pattern (57 bp):
TCTATTTTTTTTGATTTTATTTTATCTGCTTCTTTTTTATTTTAGTTTTACAAATAT
Found at i:895830 original size:16 final size:17
Alignment explanation
Indices: 895812--895845 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
895802 GTTTTTTTTT
*
895812 AAATCTTATAACTCCTAA
1 AAATCATATAACTCCT-A
895830 AAATCATATAACTCCT
1 AAATCATATAACTCCT
895846 TCTACTTTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (17 bp):
AAATCATATAACTCCTA
Found at i:906627 original size:4 final size:4
Alignment explanation
Indices: 906620--906666 Score: 58
Period size: 4 Copynumber: 11.8 Consensus size: 4
906610 TTTTGTCTGT
* * * *
906620 CGTC CGTC TGTC CGTC TGTC CGTC CGTC TGTC CGTC CGTC TGTC CGT
1 CGTC CGTC CGTC CGTC CGTC CGTC CGTC CGTC CGTC CGTC CGTC CGT
906667 AAACTTTTCA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.00, C:0.40, G:0.26, T:0.34
Consensus pattern (4 bp):
CGTC
Found at i:906634 original size:8 final size:8
Alignment explanation
Indices: 906621--906666 Score: 65
Period size: 8 Copynumber: 5.8 Consensus size: 8
906611 TTTGTCTGTC
906621 GTCCGTCT
1 GTCCGTCT
906629 GTCCGTCT
1 GTCCGTCT
*
906637 GTCCGTCC
1 GTCCGTCT
* *
906645 GTCTGTCC
1 GTCCGTCT
906653 GTCCGTCT
1 GTCCGTCT
906661 GTCCGT
1 GTCCGT
906667 AAACTTTTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 34 1.00
ACGTcount: A:0.00, C:0.39, G:0.26, T:0.35
Consensus pattern (8 bp):
GTCCGTCT
Found at i:906644 original size:12 final size:12
Alignment explanation
Indices: 906629--906666 Score: 76
Period size: 12 Copynumber: 3.2 Consensus size: 12
906619 TCGTCCGTCT
906629 GTCCGTCTGTCC
1 GTCCGTCTGTCC
906641 GTCCGTCTGTCC
1 GTCCGTCTGTCC
906653 GTCCGTCTGTCC
1 GTCCGTCTGTCC
906665 GT
1 GT
906667 AAACTTTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.00, C:0.39, G:0.26, T:0.34
Consensus pattern (12 bp):
GTCCGTCTGTCC
Found at i:906962 original size:166 final size:166
Alignment explanation
Indices: 906752--907132 Score: 717
Period size: 166 Copynumber: 2.3 Consensus size: 166
906742 AGGCAAAGGG
906752 GATTCAAAGTTGTGAAATTCATGACCCCCGGGGGTAGGATGGGGCCACAATGGGGGGTCGAAGTT
1 GATTCAAAGTTGTGAAATTCATGACCCCCGGGGGTAGGATGGGGCCACAATGGGGGGTCGAAGTT
906817 TTACATAGGAATAAATAGAGTAAATCTTTAAAAATCTTCTTCTCAGAAACTAATCAGCCAGGAAA
66 TTACATAGGAATAAATAGAGTAAATCTTTAAAAATCTTCTTCTCAGAAACTAATCAGCCAGGAAA
906882 GCTGAAACTTGTGTGGAAGCATCCTCAGGTAGTGTA
131 GCTGAAACTTGTGTGGAAGCATCCTCAGGTAGTGTA
906918 GATTCAAAGTTGTGAAATTCATGACCCCCGGGGGTAGGATGGGGCCACAATGGGGGGTCGAAGTT
1 GATTCAAAGTTGTGAAATTCATGACCCCCGGGGGTAGGATGGGGCCACAATGGGGGGTCGAAGTT
906983 TTACATAGGAATAAATAGAGTAAATCTTTAAAAATCTTCTTCTCAGAAACTAATCAGCCAGGAAA
66 TTACATAGGAATAAATAGAGTAAATCTTTAAAAATCTTCTTCTCAGAAACTAATCAGCCAGGAAA
907048 GCTGAAACTTGTGTGGAAGCATCCTCAGGTAGTGTA
131 GCTGAAACTTGTGTGGAAGCATCCTCAGGTAGTGTA
* * * * *
907084 AATTCAAAGTTGTGAAAATCATGACCCCTGGGGTTAGGGTGGGGCCACA
1 GATTCAAAGTTGTGAAATTCATGACCCCCGGGGGTAGGATGGGGCCACA
907133 TATATAAACA
Statistics
Matches: 210, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
166 210 1.00
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.25
Consensus pattern (166 bp):
GATTCAAAGTTGTGAAATTCATGACCCCCGGGGGTAGGATGGGGCCACAATGGGGGGTCGAAGTT
TTACATAGGAATAAATAGAGTAAATCTTTAAAAATCTTCTTCTCAGAAACTAATCAGCCAGGAAA
GCTGAAACTTGTGTGGAAGCATCCTCAGGTAGTGTA
Found at i:915518 original size:4 final size:4
Alignment explanation
Indices: 915509--915544 Score: 63
Period size: 4 Copynumber: 9.0 Consensus size: 4
915499 TACCCTTGTG
*
915509 TGTC TGTC TGTC TGTC TGTC CGTC TGTC TGTC TGTC
1 TGTC TGTC TGTC TGTC TGTC TGTC TGTC TGTC TGTC
915545 AGTCCGTCCG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.00, C:0.28, G:0.25, T:0.47
Consensus pattern (4 bp):
TGTC
Found at i:925910 original size:12 final size:13
Alignment explanation
Indices: 925893--925926 Score: 52
Period size: 12 Copynumber: 2.6 Consensus size: 13
925883 AATTACAATT
925893 AATTTTTAT-TTG
1 AATTTTTATGTTG
925905 AATTTTTATGTTG
1 AATTTTTATGTTG
925918 AATATTTTA
1 AAT-TTTTA
925927 ATTATTATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 9 0.45
13 6 0.30
14 5 0.25
ACGTcount: A:0.29, C:0.00, G:0.09, T:0.62
Consensus pattern (13 bp):
AATTTTTATGTTG
Found at i:933140 original size:31 final size:29
Alignment explanation
Indices: 933097--933451 Score: 327
Period size: 31 Copynumber: 11.6 Consensus size: 29
933087 ATATTTTATG
*
933097 GGGTAAGCCACAGGATTTAATGATTGGTA
1 GGGTAAGTCACAGGATTTAATGATTGGTA
*
933126 GGGTTAAGATCACAGGATTTAATGACTGGTAA
1 GGG-TAAG-TCACAGGATTTAATGATTGGT-A
933158 GGGTAAGTTCACAGGATTTAATGATT-GTA
1 GGGTAAG-TCACAGGATTTAATGATTGGTA
* *
933187 TAGGTAAGTCTACAGGATTTAATGATTGGGA
1 -GGGTAAGTC-ACAGGATTTAATGATTGGTA
*
933218 GGGGTAAGTCCATAGGATTTAATGATT-GTA
1 -GGGTAAGT-CACAGGATTTAATGATTGGTA
933248 GGGGTAAGTCCACAGGATTTAATGATTGGTA
1 -GGGTAAGT-CACAGGATTTAATGATTGGTA
* * *
933279 GGGGTAAGTCCACAGAATTTAGTGATTGTTAA
1 -GGGTAAGT-CACAGGATTTAATGATTGGT-A
*
933311 GGGTAAGTCCACAGGATTTAATGATTGTTAA
1 GGGTAAGT-CACAGGATTTAATGATTGGT-A
* * **
933342 GAGTAAGTCAACAGGATTTAATTATAAGTA
1 GGGTAAGTC-ACAGGATTTAATGATTGGTA
* * * *
933372 GGGGTAAGTTAACATGATTCAATGATTGGAA
1 -GGGTAAG-TCACAGGATTTAATGATTGGTA
* *
933403 GGAGTAAGTCAACAGGATTTAGTGATTGTTA
1 GG-GTAAGTC-ACAGGATTTAATGATTGGTA
933434 GGGGTAAGTCCACAGGAT
1 -GGGTAAGT-CACAGGAT
933452 GTTATCAATG
Statistics
Matches: 275, Mismatches: 35, Indels: 30
0.81 0.10 0.09
Matches are distributed among these distances:
29 6 0.02
30 61 0.22
31 198 0.72
32 10 0.04
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (29 bp):
GGGTAAGTCACAGGATTTAATGATTGGTA
Found at i:933173 original size:62 final size:62
Alignment explanation
Indices: 933105--933500 Score: 389
Period size: 62 Copynumber: 6.5 Consensus size: 62
933095 TGGGGTAAGC
* *
933105 CACAGGATTTAATGATTGGTAGGGTTAAGAT-CACAGGATTTAATGACTGGTAAGGGTAAGTT
1 CACAGGATTTAATGATTGGTAGGGGTAAG-TCCACAGGATTTAATGATTGGTAAGGGTAAGTT
** * * * *
933167 CACAGGATTTAATGATT-GTATAGGTAAGTCTACAGGATTTAATGATTGGGAGGGGTAAGTC
1 CACAGGATTTAATGATTGGTAGGGGTAAGTCCACAGGATTTAATGATTGGTAAGGGTAAGTT
* * *
933228 CATAGGATTTAATGATT-GTAGGGGTAAGTCCACAGGATTTAATGATTGGTAGGGGTAAGTC
1 CACAGGATTTAATGATTGGTAGGGGTAAGTCCACAGGATTTAATGATTGGTAAGGGTAAGTT
* * * * * *
933289 CACAGAATTTAGTGATTGTTAAGGGTAAGTCCACAGGATTTAATGATTGTTAAGAGTAAG-T
1 CACAGGATTTAATGATTGGTAGGGGTAAGTCCACAGGATTTAATGATTGGTAAGGGTAAGTT
* ** ** * *
933350 CAACAGGATTTAATTATAAGTAGGGGTAAGTTAACATGATTCAATGATTGG-AAGGAGTAAG-T
1 C-ACAGGATTTAATGATTGGTAGGGGTAAGTCCACAGGATTTAATGATTGGTAAGG-GTAAGTT
* * * * *
933412 CAACAGGATTTAGTGATTGTTAGGGGTAAGTCCACAGGATGTT-ATCAATGGT-TGGGTAAGTT
1 C-ACAGGATTTAATGATTGGTAGGGGTAAGTCCACAGGAT-TTAATGATTGGTAAGGGTAAGTT
* *
933474 AACAGAATCTT-ATGATT-GTAGGGGTAA
1 CACAGGAT-TTAATGATTGGTAGGGGTAA
933501 TGATTGAAAA
Statistics
Matches: 275, Mismatches: 51, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
60 10 0.04
61 124 0.45
62 140 0.51
63 1 0.00
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (62 bp):
CACAGGATTTAATGATTGGTAGGGGTAAGTCCACAGGATTTAATGATTGGTAAGGGTAAGTT
Found at i:936555 original size:16 final size:16
Alignment explanation
Indices: 936534--936567 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
936524 GCAATAGACA
936534 TGAATGAAAATGATAT
1 TGAATGAAAATGATAT
936550 TGAATGAAAATGATAT
1 TGAATGAAAATGATAT
936566 TG
1 TG
936568 TGTAATTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.21, T:0.32
Consensus pattern (16 bp):
TGAATGAAAATGATAT
Found at i:939573 original size:4 final size:4
Alignment explanation
Indices: 939553--939596 Score: 54
Period size: 4 Copynumber: 11.0 Consensus size: 4
939543 TAGGTAGATG
* *
939553 GACA GACA GGCCA -ACA GACA GACA GACA GACA GAGA GACA GACA
1 GACA GACA -GACA GACA GACA GACA GACA GACA GACA GACA GACA
939597 ACAAGAAAGC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
3 2 0.06
4 29 0.85
5 3 0.09
ACGTcount: A:0.48, C:0.25, G:0.27, T:0.00
Consensus pattern (4 bp):
GACA
Found at i:940387 original size:25 final size:25
Alignment explanation
Indices: 940353--940428 Score: 143
Period size: 25 Copynumber: 3.0 Consensus size: 25
940343 ATAAATTATT
940353 AGAAATCAAAATCCTAGCAATGTGC
1 AGAAATCAAAATCCTAGCAATGTGC
940378 AGAAATCAAAATCCTAGCAATGTGC
1 AGAAATCAAAATCCTAGCAATGTGC
*
940403 AGAAATCAAAATCCTAGCAATATGC
1 AGAAATCAAAATCCTAGCAATGTGC
940428 A
1 A
940429 CACCTCTGAT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 50 1.00
ACGTcount: A:0.46, C:0.20, G:0.14, T:0.20
Consensus pattern (25 bp):
AGAAATCAAAATCCTAGCAATGTGC
Found at i:942208 original size:20 final size:21
Alignment explanation
Indices: 942183--942271 Score: 137
Period size: 21 Copynumber: 4.3 Consensus size: 21
942173 TTAACATATA
*
942183 TTCAAAT-ATTTGTACCTATC
1 TTCAAATCAATTGTACCTATC
942203 TTCAAAT-AATTGTACCTATC
1 TTCAAATCAATTGTACCTATC
*
942223 TTCAATTCAATTGTACCTATC
1 TTCAAATCAATTGTACCTATC
*
942244 TTCAATTCAATTGTACCTATC
1 TTCAAATCAATTGTACCTATC
942265 TTCAAAT
1 TTCAAAT
942272 TGAATTAGAG
Statistics
Matches: 65, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
20 25 0.38
21 40 0.62
ACGTcount: A:0.31, C:0.21, G:0.04, T:0.43
Consensus pattern (21 bp):
TTCAAATCAATTGTACCTATC
Found at i:942236 original size:21 final size:21
Alignment explanation
Indices: 942192--942269 Score: 140
Period size: 21 Copynumber: 3.8 Consensus size: 21
942182 ATTCAAATAT
*
942192 TTGTACCTATCTTCAAAT-AA
1 TTGTACCTATCTTCAATTCAA
942212 TTGTACCTATCTTCAATTCAA
1 TTGTACCTATCTTCAATTCAA
942233 TTGTACCTATCTTCAATTCAA
1 TTGTACCTATCTTCAATTCAA
942254 TTGTACCTATCTTCAA
1 TTGTACCTATCTTCAA
942270 ATTGAATTAG
Statistics
Matches: 56, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
20 17 0.30
21 39 0.70
ACGTcount: A:0.29, C:0.23, G:0.05, T:0.42
Consensus pattern (21 bp):
TTGTACCTATCTTCAATTCAA
Found at i:942307 original size:43 final size:42
Alignment explanation
Indices: 942246--942335 Score: 119
Period size: 43 Copynumber: 2.1 Consensus size: 42
942236 TACCTATCTT
*
942246 CAATTCAATTGTACCTATCTTCAAATTGAATTAG-AGATAGGTA
1 CAATTCAATTATACCTATCTT-AAATT-AATTAGAAGATAGGTA
* * *
942289 CAATTCAATTATACCTATCTTTAATTCATTTGAAGATAGGTA
1 CAATTCAATTATACCTATCTTAAATTAATTAGAAGATAGGTA
942331 CAATT
1 CAATT
942336 GATTTGAAGA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
41 4 0.10
42 18 0.43
43 20 0.48
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (42 bp):
CAATTCAATTATACCTATCTTAAATTAATTAGAAGATAGGTA
Found at i:942404 original size:21 final size:21
Alignment explanation
Indices: 942318--942411 Score: 125
Period size: 21 Copynumber: 4.2 Consensus size: 21
942308 TTTAATTCAT
*
942318 TTGAAGATAGGTACAATTGAT
1 TTGAAGATAGGTACAATTGAA
942339 TTGAAGATAGGTACAAATGCAATGAA
1 TTGAAGATAGGTAC-AAT----TGAA
942365 TTGAAGATAGGTACAATTGAA
1 TTGAAGATAGGTACAATTGAA
*
942386 TTAAAGATAGGTACAATTGAA
1 TTGAAGATAGGTACAATTGAA
942407 TTGAA
1 TTGAA
942412 CCTATCTTCA
Statistics
Matches: 65, Mismatches: 3, Indels: 10
0.83 0.04 0.13
Matches are distributed among these distances:
21 42 0.65
22 3 0.05
25 3 0.05
26 17 0.26
ACGTcount: A:0.44, C:0.05, G:0.22, T:0.29
Consensus pattern (21 bp):
TTGAAGATAGGTACAATTGAA
Found at i:942709 original size:17 final size:17
Alignment explanation
Indices: 942687--942720 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
942677 AACGTTAGTG
942687 ACCCTAACTACGTCACT
1 ACCCTAACTACGTCACT
*
942704 ACCCTAACTCCGTCACT
1 ACCCTAACTACGTCACT
942721 TTTTGGGCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.44, G:0.06, T:0.24
Consensus pattern (17 bp):
ACCCTAACTACGTCACT
Found at i:942975 original size:21 final size:21
Alignment explanation
Indices: 942943--943011 Score: 102
Period size: 21 Copynumber: 3.3 Consensus size: 21
942933 TAGATATGTC
*
942943 TGAATTGAACCTATCTTCAAA
1 TGAATTGTACCTATCTTCAAA
* *
942964 TCAATTGTACCTATCTTTAAA
1 TGAATTGTACCTATCTTCAAA
*
942985 TGAATTTTACCTATCTTCAAA
1 TGAATTGTACCTATCTTCAAA
943006 TGAATT
1 TGAATT
943012 AGAGATAGGT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.35, C:0.17, G:0.07, T:0.41
Consensus pattern (21 bp):
TGAATTGTACCTATCTTCAAA
Found at i:943081 original size:42 final size:42
Alignment explanation
Indices: 942988--943235 Score: 148
Period size: 42 Copynumber: 6.0 Consensus size: 42
942978 CTTTAAATGA
* *
942988 ATTT-TACCTATCTTCAAATGAATT-AGAGATAGGTATAATTC
1 ATTTGTACCTATCTTTAATTGAATTGA-AGATAGGTATAATTC
* **
943029 AATTAAACCTATCTTTAATTGAATTGAAGATAGGTATAATTC
1 ATTTGTACCTATCTTTAATTGAATTGAAGATAGGTATAATTC
** * * * * **
943071 ATTTGTACCTAGGTATAATTCATTTGTACCTAGGTATAATTC
1 ATTTGTACCTATCTTTAATTGAATTGAAGATAGGTATAATTC
** * *
943113 ATTTGTACCTAGGTATAATT--ATTTAGAGATAGGTATAATT-
1 ATTTGTACCTATCTTTAATTGAATTGA-AGATAGGTATAATTC
** * * * ** ** *
943153 ATTTACACCTATCTTCAATTCAATTGTACCTATCTTTAATTC
1 ATTTGTACCTATCTTTAATTGAATTGAAGATAGGTATAATTC
* * * *
943195 AATTGTACCTAT-TTTCAAATGATTTGAAGATAGGTACAATT
1 ATTTGTACCTATCTTT-AATTGAATTGAAGATAGGTATAATT
943236 AATTGAAGAT
Statistics
Matches: 153, Mismatches: 47, Indels: 13
0.72 0.22 0.06
Matches are distributed among these distances:
40 16 0.10
41 26 0.17
42 110 0.72
43 1 0.01
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.41
Consensus pattern (42 bp):
ATTTGTACCTATCTTTAATTGAATTGAAGATAGGTATAATTC
Found at i:943083 original size:21 final size:21
Alignment explanation
Indices: 943059--943205 Score: 149
Period size: 21 Copynumber: 7.1 Consensus size: 21
943049 GAATTGAAGA
943059 TAGGTATAATTCATTTGTACC
1 TAGGTATAATTCATTTGTACC
943080 TAGGTATAATTCATTTGTACC
1 TAGGTATAATTCATTTGTACC
943101 TAGGTATAATTCATTTGTACC
1 TAGGTATAATTCATTTGTACC
**
943122 TAGGTATAATT-ATTTAG-AGA
1 TAGGTATAATTCATTT-GTACC
**
943142 TAGGTATAATT-ATTTACACC
1 TAGGTATAATTCATTTGTACC
** *
943162 TATCT-TCAATTCAATTGTACC
1 TAGGTAT-AATTCATTTGTACC
** * *
943183 TATCTTTAATTCAATTGTACC
1 TAGGTATAATTCATTTGTACC
943204 TA
1 TA
943206 TTTTCAAATG
Statistics
Matches: 111, Mismatches: 10, Indels: 10
0.85 0.08 0.08
Matches are distributed among these distances:
19 1 0.01
20 28 0.25
21 81 0.73
22 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.43
Consensus pattern (21 bp):
TAGGTATAATTCATTTGTACC
Found at i:943206 original size:21 final size:21
Alignment explanation
Indices: 943159--943212 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
943149 AATTATTTAC
943159 ACCTATCTTCAATTCAATTGT
1 ACCTATCTTCAATTCAATTGT
*
943180 ACCTATCTTTAATTCAATTGT
1 ACCTATCTTCAATTCAATTGT
*
943201 ACCTATTTTCAA
1 ACCTATCTTCAA
943213 ATGATTTGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.30, C:0.22, G:0.04, T:0.44
Consensus pattern (21 bp):
ACCTATCTTCAATTCAATTGT
Found at i:943278 original size:20 final size:20
Alignment explanation
Indices: 943210--943282 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
943200 TACCTATTTT
943210 CAAATGATTTGAAGATAGGTA
1 CAAAT-ATTTGAAGATAGGTA
* * *
943231 CAATTAATTGAAGATATGTA
1 CAAATATTTGAAGATAGGTA
*
943251 CAATTATTTGAAGATAGGTA
1 CAAATATTTGAAGATAGGTA
943271 CAAATATTTGAA
1 CAAATATTTGAA
943283 TATATGTTAA
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
20 42 0.91
21 4 0.09
ACGTcount: A:0.44, C:0.05, G:0.18, T:0.33
Consensus pattern (20 bp):
CAAATATTTGAAGATAGGTA
Found at i:944376 original size:32 final size:32
Alignment explanation
Indices: 944298--944672 Score: 129
Period size: 32 Copynumber: 11.8 Consensus size: 32
944288 CAGGTATGTG
* *
944298 TACCAGTGGTTGTATATACAACAT-ATCTGTA
1 TACCAGTGGTTGTATATACAACATGGTCTTTA
* * *
944329 TATCATTGGTTGTATATACTACATGGTCTTTA
1 TACCAGTGGTTGTATATACAACATGGTCTTTA
* *
944361 TACCTGTGGTTGTATATACAACA-GGT-TTCGTG
1 TACCAGTGGTTGTATATACAACATGGTCTT--TA
* * *
944393 TACCAGTGGTTGTATATACCACA-GGTACTGTG
1 TACCAGTGGTTGTATATACAACATGGT-CTTTA
* * *
944425 TACCATTGCTTGTATAAACCAA-A-GGT-TATGTA
1 TACCAGTGGTTGTATATA-CAACATGGTCT-T-TA
* * * * *
944457 CACCAGTGATTGTGTATACCACA-GGT-TTCGTG
1 TACCAGTGGTTGTATATACAACATGGTCTT--TA
* * *
944489 TACCAGTGGTTGTATATACCACA-GGTACTCTG
1 TACCAGTGGTTGTATATACAACATGGT-CTTTA
* * *
944521 TACCATTGCTTGTATAAACCAA-A-GGT-TATGTA
1 TACCAGTGGTTGTATATA-CAACATGGTCT-T-TA
* * * * * *
944553 CACCAGTGATTGTGTATACCACA-GGTCCTGTG
1 TACCAGTGGTTGTATATACAACATGGT-CTTTA
* * *
944585 TACCATTGCTTGTATA-ACCAA-A-GGTTCTGTA
1 TACCAGTGGTTGTATATA-CAACATGG-TCTTTA
* * *
944616 CACCAGTGGTTGTATATACAACA-GGTTTTGTG
1 TACCAGTGGTTGTATATACAACATGGTCTT-TA
** *
944648 TAGTAGTGGTTGTATATACCACATG
1 TACCAGTGGTTGTATATACAACATG
944673 TCCTGTATAC
Statistics
Matches: 260, Mismatches: 60, Indels: 46
0.71 0.16 0.13
Matches are distributed among these distances:
30 4 0.02
31 55 0.21
32 193 0.74
33 5 0.02
34 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.35
Consensus pattern (32 bp):
TACCAGTGGTTGTATATACAACATGGTCTTTA
Found at i:944438 original size:64 final size:64
Alignment explanation
Indices: 944287--944684 Score: 296
Period size: 64 Copynumber: 6.3 Consensus size: 64
944277 TGAAAGGTTA
* * * * * *
944287 ACAGGTA-TGTGTACCAGTGGTTGTATATACAACA--TATCTGTATATCATTGGTTGTATATACT
1 ACAGGTACTGTATACCAGTGGTTGTATATACAACAGGTTTC-GTGTACCAGTGGTTGTATATACC
* *
944349 ACATGGT-CTTTATACCTGTGGTTGTATATACAACAGGTTTCGTGTACCAGTGGTTGTATATACC
1 ACA-GGTACTGTATACCAGTGGTTGTATATACAACAGGTTTCGTGTACCAGTGGTTGTATATACC
* * * * ** * *
944413 ACAGGTACTGTGTACCATTGCTTGTATAAACCAA-AGGTTAT-GTACACCAGTGATTGTGTATAC
1 ACAGGTACTGTATACCAGTGGTTGTATATA-CAACAGGTT-TCGTGTACCAGTGGTTGTATATAC
944476 C
64 C
* * * * * * *
944477 ACAGGT-TTCGTGTACCAGTGGTTGTATATACCACAGGTACTC-TGTACCATTGCTTGTATAAAC
1 ACAGGTACT-GTATACCAGTGGTTGTATATACAACAGGT-TTCGTGTACCAGTGGTTGTATATAC
944540 C
64 C
* * * * * * * *
944541 AAAGGTTA-TGTACACCAGTGATTGTGTATACCACAGG-TCCTGTGTACCATTGCTTGTATA-AC
1 ACAGG-TACTGTATACCAGTGGTTGTATATACAACAGGTTTC-GTGTACCAGTGGTTGTATATAC
944603 C
64 C
* * * * **
944604 AAAGGTTCTGTACACCAGTGGTTGTATATACAACAGGTTTTGTGTAGTAGTGGTTGTATATACC
1 ACAGGTACTGTATACCAGTGGTTGTATATACAACAGGTTTCGTGTACCAGTGGTTGTATATACC
* *
944668 ACATGTCCTGTATACCA
1 ACAGGTACTGTATACCA
944685 CATATACTAT
Statistics
Matches: 267, Mismatches: 51, Indels: 34
0.76 0.14 0.10
Matches are distributed among these distances:
62 5 0.02
63 82 0.31
64 171 0.64
65 9 0.03
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (64 bp):
ACAGGTACTGTATACCAGTGGTTGTATATACAACAGGTTTCGTGTACCAGTGGTTGTATATACC
Found at i:944481 original size:96 final size:96
Alignment explanation
Indices: 944295--944614 Score: 400
Period size: 96 Copynumber: 3.4 Consensus size: 96
944285 TAACAGGTAT
* * * * * * *
944295 GTGTACCAGTGGTTGTATATACAACA--TATCTGTATATCATTGGTTGTATATACTACATGGTCT
1 GTGTACCAGTGGTTGTATATACCACAGGTA-CTGTGTACCATTGCTTGTATAAACCA-AAGGT-T
* * * * *
944358 -T-TATACCTGTGGTTGTATATACAACAGGTTTC
63 ATGTACACCAGTGATTGTGTATACCACAGGTTTC
944390 GTGTACCAGTGGTTGTATATACCACAGGTACTGTGTACCATTGCTTGTATAAACCAAAGGTTATG
1 GTGTACCAGTGGTTGTATATACCACAGGTACTGTGTACCATTGCTTGTATAAACCAAAGGTTATG
944455 TACACCAGTGATTGTGTATACCACAGGTTTC
66 TACACCAGTGATTGTGTATACCACAGGTTTC
*
944486 GTGTACCAGTGGTTGTATATACCACAGGTACTCTGTACCATTGCTTGTATAAACCAAAGGTTATG
1 GTGTACCAGTGGTTGTATATACCACAGGTACTGTGTACCATTGCTTGTATAAACCAAAGGTTATG
*
944551 TACACCAGTGATTGTGTATACCACAGG-TCC
66 TACACCAGTGATTGTGTATACCACAGGTTTC
* * * *
944581 TGTGTACCATTGCTTGTATA-ACCAAAGGTTCTGT
1 -GTGTACCAGTGGTTGTATATACCACAGGTACTGT
944615 ACACCAGTGG
Statistics
Matches: 201, Mismatches: 19, Indels: 10
0.87 0.08 0.04
Matches are distributed among these distances:
94 1 0.00
95 43 0.21
96 155 0.77
97 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.35
Consensus pattern (96 bp):
GTGTACCAGTGGTTGTATATACCACAGGTACTGTGTACCATTGCTTGTATAAACCAAAGGTTATG
TACACCAGTGATTGTGTATACCACAGGTTTC
Found at i:947945 original size:1 final size:1
Alignment explanation
Indices: 947941--947975 Score: 70
Period size: 1 Copynumber: 35.0 Consensus size: 1
947931 TCTCACTCTN
947941 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
947976 TACCAATGAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Found at i:961229 original size:2 final size:2
Alignment explanation
Indices: 961222--961275 Score: 99
Period size: 2 Copynumber: 27.0 Consensus size: 2
961212 GTGATCAGCT
*
961222 GA GA GA GA GA GA AA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
961264 GA GA GA GA GA GA
1 GA GA GA GA GA GA
961276 TTCTGTCATG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
GA
Found at i:970313 original size:20 final size:20
Alignment explanation
Indices: 970285--970324 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
970275 ATGAAATTGG
* * *
970285 GTTTTTTTTTGTTTTGTTTT
1 GTTTATTTTTATTTTATTTT
970305 GTTTATTTTTATTTTATTTT
1 GTTTATTTTTATTTTATTTT
970325 ATTTTTATTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.07, C:0.00, G:0.10, T:0.82
Consensus pattern (20 bp):
GTTTATTTTTATTTTATTTT
Found at i:973162 original size:39 final size:39
Alignment explanation
Indices: 973108--973187 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
973098 AACTTGAAGA
973108 CTGTTTACTCAGAGAGACTGGGTAACAGAGATGAGGAAT
1 CTGTTTACTCAGAGAGACTGGGTAACAGAGATGAGGAAT
*
973147 CTGTTTACTCTGAGAGACTGGGTAACAGAGATGAGGAAT
1 CTGTTTACTCAGAGAGACTGGGTAACAGAGATGAGGAAT
973186 CT
1 CT
973188 TTGGTTGCTG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.31, C:0.14, G:0.30, T:0.25
Consensus pattern (39 bp):
CTGTTTACTCAGAGAGACTGGGTAACAGAGATGAGGAAT
Found at i:974927 original size:24 final size:25
Alignment explanation
Indices: 974874--974927 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 25
974864 ACAGACAACA
*
974874 ACAGATTGTGTAATTCTAAAATGAT
1 ACAGATTGTGTAATTCTAAAATAAT
* *
974899 TCAGA-TGTGTAATTCTAATATAAT
1 ACAGATTGTGTAATTCTAAAATAAT
974923 ACAGA
1 ACAGA
974928 CAGCACCTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 21 0.84
25 4 0.16
ACGTcount: A:0.41, C:0.09, G:0.15, T:0.35
Consensus pattern (25 bp):
ACAGATTGTGTAATTCTAAAATAAT
Found at i:984778 original size:18 final size:18
Alignment explanation
Indices: 984723--984779 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 18
984713 ATTTGATCAC
*
984723 ATAATACAATATCATAAAAT
1 ATAATACAATATCAT--ATT
984743 ATAATACAATAT-AGTATT
1 ATAATACAATATCA-TATT
*
984761 ATATTACAATATCATATT
1 ATAATACAATATCATATT
984779 A
1 A
984780 CATAATACAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
18 18 0.55
19 2 0.06
20 13 0.39
ACGTcount: A:0.53, C:0.09, G:0.02, T:0.37
Consensus pattern (18 bp):
ATAATACAATATCATATT
Found at i:985018 original size:15 final size:15
Alignment explanation
Indices: 984989--985137 Score: 97
Period size: 15 Copynumber: 9.4 Consensus size: 15
984979 ATACATATTG
* *
984989 TATCATATGACACAA
1 TATCATATAATACAA
*
985004 TAAT-ATATATTACAA
1 T-ATCATATAATACAA
985019 TATCATATAATACAA
1 TATCATATAATACAA
*
985034 TTTCATGTGATAAGATA-ATA
1 TATCA--T-AT-A-ATACA-A
985054 TATCATATAA-ACCAA
1 TATCATATAATA-CAA
*
985069 TATCATATCATACAA
1 TATCATATAATACAA
* *
985084 TATCGTATGATACAA
1 TATCATATAATACAA
*
985099 TATTATATAATATTACAA
1 TATCATAT-A-A-TACAA
985117 TATCATATAATACAA
1 TATCATATAATACAA
*
985132 TTTCAT
1 TATCAT
985138 GTGATATAAT
Statistics
Matches: 106, Mismatches: 14, Indels: 28
0.72 0.09 0.19
Matches are distributed among these distances:
14 3 0.03
15 67 0.63
16 6 0.06
17 5 0.05
18 15 0.14
19 2 0.02
20 8 0.08
ACGTcount: A:0.47, C:0.13, G:0.04, T:0.36
Consensus pattern (15 bp):
TATCATATAATACAA
Found at i:985070 original size:50 final size:49
Alignment explanation
Indices: 985000--985182 Score: 175
Period size: 50 Copynumber: 3.8 Consensus size: 49
984990 ATCATATGAC
985000 ACAATAATATATAT-T--A-CAATATCATATAATACAATTTCATGTGAT
1 ACAATAATATATATATAAACCAATATCATATAATACAATTTCATGTGAT
* * * *
985045 A-AGATAATATATCATATAAACCAATATCATATCATACAATATCGTATGAT
1 ACA-ATAATATAT-ATATAAACCAATATCATATAATACAATTTCATGTGAT
* *
985095 ACAATATTATATA-ATATTA-CAATATCATATAATACAATTTCATGTGAT
1 ACAATAATATATATATA-AACCAATATCATATAATACAATTTCATGTGAT
* ** *
985143 ATAATTCTATAT-TACTGAAACCAATATCATATTATACAAT
1 ACAATAATATATATA-T-AAACCAATATCATATAATACAAT
985183 ATTGTATGAT
Statistics
Matches: 111, Mismatches: 15, Indels: 19
0.77 0.10 0.13
Matches are distributed among these distances:
44 1 0.01
45 10 0.09
46 2 0.02
47 1 0.01
48 38 0.34
49 5 0.05
50 53 0.48
51 1 0.01
ACGTcount: A:0.46, C:0.13, G:0.04, T:0.37
Consensus pattern (49 bp):
ACAATAATATATATATAAACCAATATCATATAATACAATTTCATGTGAT
Found at i:985117 original size:18 final size:18
Alignment explanation
Indices: 985094--985128 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
985084 TATCGTATGA
*
985094 TACAATATTATATAATAT
1 TACAATATCATATAATAT
985112 TACAATATCATATAATA
1 TACAATATCATATAATA
985129 CAATTTCATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (18 bp):
TACAATATCATATAATAT
Found at i:985128 original size:98 final size:98
Alignment explanation
Indices: 984989--985216 Score: 317
Period size: 98 Copynumber: 2.4 Consensus size: 98
984979 ATACATATTG
* *
984989 TATCATATGACACAATA--ATAT-ATATTACAATATCATATAATACAATTTCATGTGATA-AGAT
1 TATCGTATGATACAATATTATATAATATTACAATATCATATAATACAATTTCATGTGATATA-AT
985050 AATATATCATA-T-AAACCAATATCATATCATACAA
65 AATATAT--TACTGAAACCAATATCATATCATACAA
*
985084 TATCGTATGATACAATATTATATAATATTACAATATCATATAATACAATTTCATGTGATATAATT
1 TATCGTATGATACAATATTATATAATATTACAATATCATATAATACAATTTCATGTGATATAATA
* *
985149 CTATATTACTGAAACCAATATCATATTATACAA
66 ATATATTACTGAAACCAATATCATATCATACAA
* *
985182 TATTGTATGATACAATATTATAGAATA-TACAATAT
1 TATCGTATGATACAATATTATATAATATTACAATAT
985217 TGTATCATAG
Statistics
Matches: 120, Mismatches: 7, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
95 15 0.12
96 2 0.02
97 13 0.11
98 89 0.74
99 1 0.01
ACGTcount: A:0.46, C:0.12, G:0.05, T:0.37
Consensus pattern (98 bp):
TATCGTATGATACAATATTATATAATATTACAATATCATATAATACAATTTCATGTGATATAATA
ATATATTACTGAAACCAATATCATATCATACAA
Found at i:985182 original size:15 final size:15
Alignment explanation
Indices: 985053--985199 Score: 73
Period size: 15 Copynumber: 9.3 Consensus size: 15
985043 ATAAGATAAT
*
985053 ATATCATA-TAAACCA
1 ATATCATATTATA-CA
*
985068 ATATCATATCATACA
1 ATATCATATTATACA
* *
985083 ATATCGTATGATACA
1 ATATCATATTATACA
*
985098 ATATTATATAATATTACA
1 ATATCATAT--TA-TACA
*
985116 ATATCATATAATACA
1 ATATCATATTATACA
* * * *
985131 ATTTCATGTGATATA
1 ATATCATATTATACA
985146 AT-TCTATATTACTGAAACCA
1 ATATC-ATATTA-T---A-CA
985166 ATATCATATTATACA
1 ATATCATATTATACA
** *
985181 ATATTGTATGATACA
1 ATATCATATTATACA
985196 ATAT
1 ATAT
985200 TATAGAATAT
Statistics
Matches: 102, Mismatches: 19, Indels: 22
0.71 0.13 0.15
Matches are distributed among these distances:
14 2 0.02
15 69 0.68
16 5 0.05
17 1 0.01
18 12 0.12
19 2 0.02
20 9 0.09
21 2 0.02
ACGTcount: A:0.45, C:0.13, G:0.05, T:0.37
Consensus pattern (15 bp):
ATATCATATTATACA
Found at i:985241 original size:32 final size:32
Alignment explanation
Indices: 985175--985241 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 32
985165 AATATCATAT
* **
985175 TATACAATATTGTATGATACAATATTATAGAA
1 TATACAATATTGTATCATACAATACAATAGAA
** *
985207 TATACAATATTGTATCATAGGATACAATATAA
1 TATACAATATTGTATCATACAATACAATAGAA
985239 TAT
1 TAT
985242 TTTGCAATAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.46, C:0.07, G:0.09, T:0.37
Consensus pattern (32 bp):
TATACAATATTGTATCATACAATACAATAGAA
Found at i:985377 original size:28 final size:28
Alignment explanation
Indices: 985327--985380 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 28
985317 GTATCATAAT
985327 ATACAATACTATACATAACAATATCATG
1 ATACAATACTATACATAACAATATCATG
985355 ATACAATA-TCATATCATAA-AATATCA
1 ATACAATACT-ATA-CATAACAATATCA
985381 AAAAAATTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
27 1 0.04
28 18 0.75
29 5 0.21
ACGTcount: A:0.52, C:0.17, G:0.02, T:0.30
Consensus pattern (28 bp):
ATACAATACTATACATAACAATATCATG
Found at i:985465 original size:20 final size:20
Alignment explanation
Indices: 985442--985494 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
985432 ATATGATATC
985442 ATATTGTATCATATCAAACA
1 ATATTGTATCATATCAAACA
* *
985462 ATATTGTTTCATATCATACA
1 ATATTGTATCATATCAAACA
985482 ATACTT-TATCATA
1 ATA-TTGTATCATA
985495 GGAATCATGT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 27 0.93
21 2 0.07
ACGTcount: A:0.40, C:0.15, G:0.04, T:0.42
Consensus pattern (20 bp):
ATATTGTATCATATCAAACA
Found at i:986539 original size:177 final size:177
Alignment explanation
Indices: 986151--986845 Score: 934
Period size: 177 Copynumber: 3.9 Consensus size: 177
986141 ACCAGACTAT
** * *
986151 GCATTCAAGCCTGTCAGGTGCATCAGTATCATAAGACACACCATCCATGGAAGTCTGGTGAAGTA
1 GCATTCAAGCCTGTCAGGTGCATCAGTATCATAAGACACACCATCCATACAAGTTTGGTGAAGTT
* * ***
986216 AGGACAAGTAATAACTAAGATA-T-CATCATCAGAGGGCACCTGTTTCAAAAACTTTATCTAACC
66 AGGACCAGTAGTAACTAAGATATTGC-T-ATCAGAGGGCACCTGCAACAAAAAC--T-T-TAACC
**
986279 AGCTCTTAAAACCTTAACCTCCTCCAGCATCCGAAACCTATTGCTCAGATTCA
125 AGCTCCAAAAACCTTAACCTCCTCCAGCATCCGAAACCTATTGCTCAGATTCA
* *
986332 GCATTCAAGCTTGTCAGGTGCATCAGTATCATAAGACGCACCATCCATACAAGTTTGGTGAAGTT
1 GCATTCAAGCCTGTCAGGTGCATCAGTATCATAAGACACACCATCCATACAAGTTTGGTGAAGTT
986397 AGGACCAGTAGTAACTAAGATATAAT-C-ATCAGAGGGCACCTGCAACAAAAACTTTAACCAGCT
66 AGGACCAGTAGTAACTAAGATAT--TGCTATCAGAGGGCACCTGCAACAAAAACTTTAACCAGCT
* * *
986460 CTAAAAACCTTAACCTCTTCCAGCATCCGAAACCTATTGCTCAGATTAA
129 CCAAAAACCTTAACCTCCTCCAGCATCCGAAACCTATTGCTCAGATTCA
* * *
986509 GCATTCAAGCTTGTCAGGTGCATCAGTATCATAAGACGCATCATCCATACAAGTTTGGTGAAGTT
1 GCATTCAAGCCTGTCAGGTGCATCAGTATCATAAGACACACCATCCATACAAGTTTGGTGAAGTT
* ** *
986574 AGGACCAGTAGTAACTTAGATATTGCTATCA-ATGGGCACCCACAACAAAAACTTTAACCTGCTC
66 AGGACCAGTAGTAACTAAGATATTGCTATCAGA-GGGCACCTGCAACAAAAACTTTAACCAGCTC
* *
986638 CAAAAACCTAAACCTCCTCCAGCATCCGAAACCTATAGCTCAGATTCA
130 CAAAAACCTTAACCTCCTCCAGCATCCGAAACCTATTGCTCAGATTCA
* * * * *
986686 GCACTCAAGCCTGTCTGGTGCATCAGTATCATAAGGCACACCATCCATGCAAGTTTGGTGATG-T
1 GCATTCAAGCCTGTCAGGTGCATCAGTATCATAAGACACACCATCCATACAAGTTTGGTGAAGTT
* * * *
986750 ACGGACCAGCAGTAACTAAGATATTGCTATCAAAGGGCACCTGCAACAAAAACTTTAACCTGGTC
66 A-GGACCAGTAGTAACTAAGATATTGCTATCAGAGGGCACCTGCAACAAAAACTTTAACCAGCTC
* *
986815 CAACAACCTTAACCTCCTCCAGCATCTGAAA
130 CAAAAACCTTAACCTCCTCCAGCATCCGAAA
986846 TTTAGGACCC
Statistics
Matches: 466, Mismatches: 40, Indels: 20
0.89 0.08 0.04
Matches are distributed among these distances:
175 1 0.00
176 4 0.01
177 355 0.76
178 2 0.00
179 1 0.00
181 101 0.22
184 2 0.00
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.24
Consensus pattern (177 bp):
GCATTCAAGCCTGTCAGGTGCATCAGTATCATAAGACACACCATCCATACAAGTTTGGTGAAGTT
AGGACCAGTAGTAACTAAGATATTGCTATCAGAGGGCACCTGCAACAAAAACTTTAACCAGCTCC
AAAAACCTTAACCTCCTCCAGCATCCGAAACCTATTGCTCAGATTCA
Found at i:986643 original size:19 final size:19
Alignment explanation
Indices: 986619--986658 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
986609 GCACCCACAA
* * *
986619 CAAAAACTTTAACCTGCTC
1 CAAAAACCTAAACCTCCTC
986638 CAAAAACCTAAACCTCCTC
1 CAAAAACCTAAACCTCCTC
986657 CA
1 CA
986659 GCATCCGAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.40, C:0.38, G:0.03, T:0.20
Consensus pattern (19 bp):
CAAAAACCTAAACCTCCTC
Found at i:986913 original size:177 final size:172
Alignment explanation
Indices: 986164--986937 Score: 696
Period size: 177 Copynumber: 4.3 Consensus size: 172
986154 TTCAAGCCTG
* * * * ** * * * *
986164 TCAGGTGCATCAGTATCATAAGACACACCATCCATGGAAGTCTGGTGAAGTAAGGACAAGTAATA
1 TCAGGTGCATCAGTATC--CAGACGCATCACCCATACAAGTTTGGTGAAGTTAGGACCAGTAGTA
* *** * **
986229 ACTAAGATA-T-CATCATCAGAGGGCACCTGTTTCAAAAACTTTATCTAACCAGCTCTTAAAACC
64 ACTAAGATATTGC-T-ATCAAAGGGCACCTGCAACAAAAAC--T-T-TAACCTGCTCCAAAAACC
* *
986292 TTAACCTCCTCCAGCATCCGAAACCTATTGCTCAGATTCAGCATTCAAGCTT
123 TTAACCTCCTCCAGCATCCGAAA--TATAGCTCAGATTCAGCATCCAAGCTT
* * *
986344 GTCAGGTGCATCAGTATCATAAGACGCACCATCCATACAAGTTTGGTGAAGTTAGGACCAGTAGT
1 -TCAGGTGCATCAGTATC--CAGACGCATCACCCATACAAGTTTGGTGAAGTTAGGACCAGTAGT
* * *
986409 AACTAAGATATAAT-C-ATCAGAGGGCACCTGCAACAAAAACTTTAACCAGCTCTAAAAACCTTA
63 AACTAAGATAT--TGCTATCAAAGGGCACCTGCAACAAAAACTTTAACCTGCTCCAAAAACCTTA
* * * *
986472 ACCTCTTCCAGCATCCGAAACCTATTGCTCAGATTAAGCATTCAAGCTT
126 ACCTCCTCCAGCATCCGAAA--TATAGCTCAGATTCAGCATCCAAGCTT
* *
986521 GTCAGGTGCATCAGTATCATAAGACGCATCATCCATACAAGTTTGGTGAAGTTAGGACCAGTAGT
1 -TCAGGTGCATCAGTATC--CAGACGCATCACCCATACAAGTTTGGTGAAGTTAGGACCAGTAGT
* * ** *
986586 AACTTAGATATTGCTATCAATGGGCACCCACAACAAAAACTTTAACCTGCTCCAAAAACCTAAAC
63 AACTAAGATATTGCTATCAAAGGGCACCTGCAACAAAAACTTTAACCTGCTCCAAAAACCTTAAC
*
986651 CTCCTCCAGCATCCGAAACCTATAGCTCAGATTCAGCA-CTCAAGCCTG
128 CTCCTCCAGCATCCGAAA--TATAGCTCAGATTCAGCATC-CAAG-CTT
* * * * * * * * *
986699 TCTGGTGCATCAGTATCATAAGGCACACCATCCATGCAAGTTTGGTGATG-TACGGACCAGCAGT
1 TCAGGTGCATCAGTATC--CAGACGCATCACCCATACAAGTTTGGTGAAGTTA-GGACCAGTAGT
* *
986763 AACTAAGATATTGCTATCAAAGGGCACCTGCAACAAAAACTTTAACCTGGTCCAACAACCTTAAC
63 AACTAAGATATTGCTATCAAAGGGCACCTGCAACAAAAACTTTAACCTGCTCCAAAAACCTTAAC
* * *
986828 CTCCTCCAGCATCTGAAATTTAGGACCCAGATTCAGCATCCAAGTCTT
128 CTCCTCCAGCATCCGAAATATA-G-CTCAGATTCAGCATCCAAG-CTT
* * * * * * *
986876 TCAAGTCCATAAGTAGGTCCAGATGCATCACCCATGCAAGTTTGGTGAAGATAGGACAAGTA
1 TCAGGTGCATCAGTA--TCCAGACGCATCACCCATACAAGTTTGGTGAAGTTAGGACCAGTA
986938 ATAGCTTAGA
Statistics
Matches: 520, Mismatches: 59, Indels: 32
0.85 0.10 0.05
Matches are distributed among these distances:
175 4 0.01
176 4 0.01
177 412 0.79
178 6 0.01
179 3 0.01
181 89 0.17
184 2 0.00
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (172 bp):
TCAGGTGCATCAGTATCCAGACGCATCACCCATACAAGTTTGGTGAAGTTAGGACCAGTAGTAAC
TAAGATATTGCTATCAAAGGGCACCTGCAACAAAAACTTTAACCTGCTCCAAAAACCTTAACCTC
CTCCAGCATCCGAAATATAGCTCAGATTCAGCATCCAAGCTT
Found at i:986948 original size:354 final size:352
Alignment explanation
Indices: 986286--986949 Score: 906
Period size: 354 Copynumber: 1.9 Consensus size: 352
986276 ACCAGCTCTT
* * * *
986286 AAAACCTTAACCTCCTCCAGCATCCGAAACCTATTGCTCAGATTCAGCATTCAAGCTTGTCAGGT
1 AAAACCTAAACCTCCTCCAGCATCCGAAACCTATAGCTCAGATTCAGCACTCAAGCCTGTCAGGT
* *
986351 GCATCAGTATCATAAGACGCACCATCCATACAAGTTTGGTGAAGTTAGGACCAGTAGTAACTAAG
66 GCATCAGTATCATAAGACACACCATCCATACAAGTTTGGTGAAGTTAGGACCAGCAGTAACTAAG
* * *
986416 ATATAATCATCAGAGGGCACCTGCAACAAAAACTTTAACCAGCTCTAAAAACCTTAACCTCTTCC
131 ATAT-ATCATCAAAGGGCACCTGCAACAAAAACTTTAACCAGCTCCAAAAACCTTAACCTCCTCC
* * * * * *
986481 AGCATCCGAAACCTATTGCTCAGATTAAGCATTCAAGCTTGTCAGGTGCATCAGTATCATAAGAC
195 AGCATCCGAAACCTATGGCCCAGATTAAGCATCCAAGCTTGTCAAGTCCATAAGTATCA-AAGAC
* * * *
986546 GCATCATCCATACAAGTTTGGTGAAGTTAGGACCAGTAGTAACTTAGATATTGCTATCAATGGGC
259 GCATCACCCATACAAGTTTGGTGAAGATAGGACAAGTAATAACTTAGATATTGCTATCAATGGGC
986611 ACCCACAACAAAAACTTTAACCTGCTCCA
324 ACCCACAACAAAAACTTTAACCTGCTCCA
*
986640 AAAACCTAAACCTCCTCCAGCATCCGAAACCTATAGCTCAGATTCAGCACTCAAGCCTGTCTGGT
1 AAAACCTAAACCTCCTCCAGCATCCGAAACCTATAGCTCAGATTCAGCACTCAAGCCTGTCAGGT
* * *
986705 GCATCAGTATCATAAGGCACACCATCCATGCAAGTTTGGTGATG-TACGGACCAGCAGTAACTAA
66 GCATCAGTATCATAAGACACACCATCCATACAAGTTTGGTGAAGTTA-GGACCAGCAGTAACTAA
* * *
986769 GATAT-TGCTATCAAAGGGCACCTGCAACAAAAACTTTAACCTGGTCCAACAACCTTAACCTCCT
130 GATATAT-C-ATCAAAGGGCACCTGCAACAAAAACTTTAACCAGCTCCAAAAACCTTAACCTCCT
* ** *
986833 CCAGCATCTGAAATTTA-GGACCCAGATTCAGCATCCAAGTCTT-TCAAGTCCATAAGTAGGTC-
193 CCAGCATCCGAAACCTATGG-CCCAGATTAAGCATCCAAG-CTTGTCAAGTCCATAAGTA--TCA
* * * *
986895 CAGATGCATCACCCATGCAAGTTTGGTGAAGATAGGACAAGTAATAGCTTAGATA
254 AAGACGCATCACCCATACAAGTTTGGTGAAGATAGGACAAGTAATAACTTAGATA
986950 CAGGACCTGC
Statistics
Matches: 269, Mismatches: 34, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
352 1 0.00
353 4 0.01
354 259 0.96
355 3 0.01
356 2 0.01
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (352 bp):
AAAACCTAAACCTCCTCCAGCATCCGAAACCTATAGCTCAGATTCAGCACTCAAGCCTGTCAGGT
GCATCAGTATCATAAGACACACCATCCATACAAGTTTGGTGAAGTTAGGACCAGCAGTAACTAAG
ATATATCATCAAAGGGCACCTGCAACAAAAACTTTAACCAGCTCCAAAAACCTTAACCTCCTCCA
GCATCCGAAACCTATGGCCCAGATTAAGCATCCAAGCTTGTCAAGTCCATAAGTATCAAAGACGC
ATCACCCATACAAGTTTGGTGAAGATAGGACAAGTAATAACTTAGATATTGCTATCAATGGGCAC
CCACAACAAAAACTTTAACCTGCTCCA
Found at i:986994 original size:6 final size:6
Alignment explanation
Indices: 986983--987020 Score: 60
Period size: 6 Copynumber: 6.3 Consensus size: 6
986973 ACCAGGTCCG
986983 GACGCC GACGCC GACGCC -ACCGCC GACGCC GACGCC GA
1 GACGCC GACGCC GACGCC GA-CGCC GACGCC GACGCC GA
987021 GGGTATAGCA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 1 0.03
6 28 0.93
7 1 0.03
ACGTcount: A:0.18, C:0.50, G:0.32, T:0.00
Consensus pattern (6 bp):
GACGCC
Found at i:990968 original size:50 final size:50
Alignment explanation
Indices: 990894--991031 Score: 260
Period size: 50 Copynumber: 2.8 Consensus size: 50
990884 TGGAAGATCC
990894 AGGTAAATCT-CTGCAGTGCCTACCTGTGATGGAGCTTGTTATATCATCA
1 AGGTAAATCTACTGCAGTGCCTACCTGTGATGGAGCTTGTTATATCATCA
*
990943 AGGTAAATCTATTGCAGTGCCTACCTGTGATGGAGCTTGTTATATCATCA
1 AGGTAAATCTACTGCAGTGCCTACCTGTGATGGAGCTTGTTATATCATCA
990993 AGGTAAATCTACTGCAGTGCCTACCTGTGATGGAGCTTG
1 AGGTAAATCTACTGCAGTGCCTACCTGTGATGGAGCTTG
991032 GCCAGGTGCA
Statistics
Matches: 86, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
49 10 0.12
50 76 0.88
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.32
Consensus pattern (50 bp):
AGGTAAATCTACTGCAGTGCCTACCTGTGATGGAGCTTGTTATATCATCA
Found at i:991536 original size:14 final size:13
Alignment explanation
Indices: 991517--991557 Score: 55
Period size: 14 Copynumber: 3.0 Consensus size: 13
991507 CTCCTCCTGT
991517 AATCAAGGTCACAA
1 AATCAAGGTCA-AA
991531 AATCAAGGTCAAA
1 AATCAAGGTCAAA
*
991544 ATGTCAAGGTCAAA
1 A-ATCAAGGTCAAA
991558 CACCTTCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 3 0.12
14 22 0.88
ACGTcount: A:0.49, C:0.17, G:0.17, T:0.17
Consensus pattern (13 bp):
AATCAAGGTCAAA
Found at i:993245 original size:15 final size:15
Alignment explanation
Indices: 993225--993255 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
993215 TAAATAACAG
993225 ATATATAGTATCTCT
1 ATATATAGTATCTCT
993240 ATATATAGTATCTCT
1 ATATATAGTATCTCT
993255 A
1 A
993256 GAGCTGTGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.45
Consensus pattern (15 bp):
ATATATAGTATCTCT
Found at i:999900 original size:2 final size:2
Alignment explanation
Indices: 999893--999938 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
999883 ACCTTTGAAA
999893 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
999935 AG AG
1 AG AG
999939 NNNNNNNNNN
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1003004 original size:18 final size:16
Alignment explanation
Indices: 1002981--1003015 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
1002971 TCAACTGAAG
1002981 AAAAATATATTTTCTTAT
1 AAAAAT-TATTTT-TTAT
1002999 AAAAATTATTTTTTAT
1 AAAAATTATTTTTTAT
1003015 A
1 A
1003016 TTCAACATCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 6 0.35
18 6 0.35
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (16 bp):
AAAAATTATTTTTTAT
Found at i:1013158 original size:33 final size:33
Alignment explanation
Indices: 1013114--1013310 Score: 263
Period size: 33 Copynumber: 6.0 Consensus size: 33
1013104 ATCATCACAT
*
1013114 TTCATGCTTATACACAAAAACATGTATAGGACC
1 TTCATGTTTATACACAAAAACATGTATAGGACC
1013147 TTCATGTTTATACACAAAAACATGTATAGGACC
1 TTCATGTTTATACACAAAAACATGTATAGGACC
* ** *
1013180 TTCATGTTTATACATAGGAACATATATAGGACC
1 TTCATGTTTATACACAAAAACATGTATAGGACC
1013213 TTCATGTTTATACACAAAAACATGTATAGGACC
1 TTCATGTTTATACACAAAAACATGTATAGGACC
* * ** *
1013246 TACATGTTTATACATAGGAACATGTATAGGGCC
1 TTCATGTTTATACACAAAAACATGTATAGGACC
* * *
1013279 TTAATATTTATACACAAGAACA--TATAGGACC
1 TTCATGTTTATACACAAAAACATGTATAGGACC
1013310 T
1 T
1013311 ATGTCATACC
Statistics
Matches: 144, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
31 9 0.06
33 135 0.94
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (33 bp):
TTCATGTTTATACACAAAAACATGTATAGGACC
Found at i:1013220 original size:66 final size:66
Alignment explanation
Indices: 1013132--1013311 Score: 292
Period size: 66 Copynumber: 2.8 Consensus size: 66
1013122 TATACACAAA
*
1013132 AACATGTATAGGACCTTCATGTTTATACACAAAAACATGTATAGGACCTTCATGTTTATACATAG
1 AACATGTATAGGACCTTCATGTTTATACACAAAAACATGTATAGGACCTACATGTTTATACATAG
1013197 G
66 G
*
1013198 AACATATATAGGACCTTCATGTTTATACACAAAAACATGTATAGGACCTACATGTTTATACATAG
1 AACATGTATAGGACCTTCATGTTTATACACAAAAACATGTATAGGACCTACATGTTTATACATAG
1013263 G
66 G
* * * *
1013264 AACATGTATAGGGCCTTAATATTTATACACAAGAACA--TATAGGACCTA
1 AACATGTATAGGACCTTCATGTTTATACACAAAAACATGTATAGGACCTA
1013312 TGTCATACCA
Statistics
Matches: 107, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
64 11 0.10
66 96 0.90
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (66 bp):
AACATGTATAGGACCTTCATGTTTATACACAAAAACATGTATAGGACCTACATGTTTATACATAG
G
Found at i:1013289 original size:99 final size:99
Alignment explanation
Indices: 1013114--1013304 Score: 292
Period size: 99 Copynumber: 1.9 Consensus size: 99
1013104 ATCATCACAT
*
1013114 TTCATGCTTATACACAAAAACATGTATAGGACCTTCATGTTTATACACAAAAACATGTATAGGAC
1 TTCATGCTTATACACAAAAACATGTATAGGACCTACATGTTTATACACAAAAACATGTATAGGAC
* * * *
1013179 CTTCATGTTTATACATAGGAACATATATAGGACC
66 CTTAATATTTATACACAAGAACATATATAGGACC
* * ** *
1013213 TTCATGTTTATACACAAAAACATGTATAGGACCTACATGTTTATACATAGGAACATGTATAGGGC
1 TTCATGCTTATACACAAAAACATGTATAGGACCTACATGTTTATACACAAAAACATGTATAGGAC
1013278 CTTAATATTTATACACAAGAACATATA
66 CTTAATATTTATACACAAGAACATATA
1013305 GGACCTATGT
Statistics
Matches: 82, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
99 82 1.00
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.31
Consensus pattern (99 bp):
TTCATGCTTATACACAAAAACATGTATAGGACCTACATGTTTATACACAAAAACATGTATAGGAC
CTTAATATTTATACACAAGAACATATATAGGACC
Found at i:1013787 original size:18 final size:18
Alignment explanation
Indices: 1013766--1013826 Score: 68
Period size: 18 Copynumber: 3.2 Consensus size: 18
1013756 CTGATTGCCT
*
1013766 TCTTCCTTCTTCTTCTCA
1 TCTTCTTTCTTCTTCTCA
1013784 TCTTCTTTATCCTTCTTCTCA
1 TCTTC-TT-T-CTTCTTCTCA
* *
1013805 TCTTCTTTATCCTTCTCA
1 TCTTCTTTCTTCTTCTCA
1013823 TCTT
1 TCTT
1013827 TCACTTCAGA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
18 17 0.46
19 2 0.05
20 3 0.08
21 15 0.41
ACGTcount: A:0.08, C:0.34, G:0.00, T:0.57
Consensus pattern (18 bp):
TCTTCTTTCTTCTTCTCA
Found at i:1013796 original size:24 final size:24
Alignment explanation
Indices: 1013769--1013820 Score: 83
Period size: 21 Copynumber: 2.3 Consensus size: 24
1013759 ATTGCCTTCT
1013769 TCCTTCTTCTTCTCATCTTCTTTA
1 TCCTTCTTCTTCTCATCTTCTTTA
1013793 T-C--CTTCTTCTCATCTTCTTTA
1 TCCTTCTTCTTCTCATCTTCTTTA
1013814 TCCTTCT
1 TCCTTCT
1013821 CATCTTTCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
21 20 0.80
22 1 0.04
23 1 0.04
24 3 0.12
ACGTcount: A:0.08, C:0.35, G:0.00, T:0.58
Consensus pattern (24 bp):
TCCTTCTTCTTCTCATCTTCTTTA
Found at i:1014106 original size:12 final size:12
Alignment explanation
Indices: 1014091--1014132 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
1014081 ATTTGTCCTC
1014091 TTTCTCCTCTTT
1 TTTCTCCTCTTT
* *
1014103 TTTCTCGTCTGAT
1 TTTCTCCTCT-TT
1014116 TTT-TCCTCTTT
1 TTTCTCCTCTTT
1014127 TTTCTC
1 TTTCTC
1014133 TTCATTTTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 4 0.17
12 16 0.67
13 4 0.17
ACGTcount: A:0.02, C:0.29, G:0.05, T:0.64
Consensus pattern (12 bp):
TTTCTCCTCTTT
Found at i:1019325 original size:27 final size:26
Alignment explanation
Indices: 1019295--1019376 Score: 62
Period size: 24 Copynumber: 3.2 Consensus size: 26
1019285 TGTATTTATA
1019295 ATATTTCCTATAAAAAAGAACATATCG
1 ATATTTCCTATAAAAAAGAACATAT-G
* * * * ** *
1019322 ATA-TTAC-AT-AAGATGTATTTATA
1 ATATTTCCTATAAAAAAGAACATATG
1019345 ATATTTCCTATAAAAAAGAACATATTG
1 ATATTTCCTATAAAAAAGAACATA-TG
1019372 ATATT
1 ATATT
1019377 ACATAAGCAA
Statistics
Matches: 37, Mismatches: 14, Indels: 8
0.63 0.24 0.14
Matches are distributed among these distances:
23 3 0.08
24 11 0.30
25 4 0.11
26 10 0.27
27 9 0.24
ACGTcount: A:0.46, C:0.10, G:0.07, T:0.37
Consensus pattern (26 bp):
ATATTTCCTATAAAAAAGAACATATG
Found at i:1019355 original size:50 final size:50
Alignment explanation
Indices: 1019280--1019383 Score: 199
Period size: 50 Copynumber: 2.1 Consensus size: 50
1019270 AGTTCCGTGT
1019280 TAAGATGTATTTATAATATTTCCTATAAAAAAGAACATATCGATATTACA
1 TAAGATGTATTTATAATATTTCCTATAAAAAAGAACATATCGATATTACA
*
1019330 TAAGATGTATTTATAATATTTCCTATAAAAAAGAACATATTGATATTACA
1 TAAGATGTATTTATAATATTTCCTATAAAAAAGAACATATCGATATTACA
1019380 TAAG
1 TAAG
1019384 CAATGTACAC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 53 1.00
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.37
Consensus pattern (50 bp):
TAAGATGTATTTATAATATTTCCTATAAAAAAGAACATATCGATATTACA
Found at i:1024137 original size:58 final size:58
Alignment explanation
Indices: 1024075--1024247 Score: 166
Period size: 58 Copynumber: 3.1 Consensus size: 58
1024065 TATATACAAA
1024075 CAGTCAAGATAAATAGTAAAGGAGAGAATTATATGACAGAATTACCCCTTCCTATAAT
1 CAGTCAAGATAAATAGTAAAGGAGAGAATTATATGACAGAATTACCCCTTCCTATAAT
* * * * * * * * * * *
1024133 CAGTCAGGGT-AA-A-T-CA-GAGA-TACTAAATGAC-TAATATA-CCATAT-ATACAAA
1 CAGTCAAGATAAATAGTAAAGGAGAGAATTATATGACAGAAT-TACCCCT-TCCTATAAT
1024184 CAGTCAAGATAAATAGTAAAGGAGAGAATTATATGACAGAATTACCCCTTCCTATAAT
1 CAGTCAAGATAAATAGTAAAGGAGAGAATTATATGACAGAATTACCCCTTCCTATAAT
1024242 CAGTCA
1 CAGTCA
1024248 GGGTAAATCA
Statistics
Matches: 82, Mismatches: 22, Indels: 22
0.65 0.17 0.17
Matches are distributed among these distances:
51 18 0.22
52 13 0.16
53 5 0.06
54 2 0.02
55 2 0.02
56 5 0.06
57 13 0.16
58 24 0.29
ACGTcount: A:0.44, C:0.16, G:0.15, T:0.25
Consensus pattern (58 bp):
CAGTCAAGATAAATAGTAAAGGAGAGAATTATATGACAGAATTACCCCTTCCTATAAT
Found at i:1024215 original size:109 final size:109
Alignment explanation
Indices: 1024024--1024269 Score: 492
Period size: 109 Copynumber: 2.3 Consensus size: 109
1024014 TCCTACAACA
1024024 CAGTCAGGGTAAATCAGAGATACTAAATGACTAATATACCATATATACAAACAGTCAAGATAAAT
1 CAGTCAGGGTAAATCAGAGATACTAAATGACTAATATACCATATATACAAACAGTCAAGATAAAT
1024089 AGTAAAGGAGAGAATTATATGACAGAATTACCCCTTCCTATAAT
66 AGTAAAGGAGAGAATTATATGACAGAATTACCCCTTCCTATAAT
1024133 CAGTCAGGGTAAATCAGAGATACTAAATGACTAATATACCATATATACAAACAGTCAAGATAAAT
1 CAGTCAGGGTAAATCAGAGATACTAAATGACTAATATACCATATATACAAACAGTCAAGATAAAT
1024198 AGTAAAGGAGAGAATTATATGACAGAATTACCCCTTCCTATAAT
66 AGTAAAGGAGAGAATTATATGACAGAATTACCCCTTCCTATAAT
1024242 CAGTCAGGGTAAATCAGAGATACTAAAT
1 CAGTCAGGGTAAATCAGAGATACTAAAT
1024270 AACTTGAATG
Statistics
Matches: 137, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
109 137 1.00
ACGTcount: A:0.45, C:0.15, G:0.15, T:0.24
Consensus pattern (109 bp):
CAGTCAGGGTAAATCAGAGATACTAAATGACTAATATACCATATATACAAACAGTCAAGATAAAT
AGTAAAGGAGAGAATTATATGACAGAATTACCCCTTCCTATAAT
Found at i:1041847 original size:2 final size:2
Alignment explanation
Indices: 1041842--1041878 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
1041832 CCCCCCCCCA
1041842 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1041879 ATTAGAAAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:1045229 original size:51 final size:51
Alignment explanation
Indices: 1045153--1045302 Score: 275
Period size: 51 Copynumber: 2.9 Consensus size: 51
1045143 ATAACAGATA
1045153 TGGTTTGTCTACGGGTGTGGTTTGTCTTGGGGTGTGGGTTGTCTATGGGTG
1 TGGTTTGTCTACGGGTGTGGTTTGTCTTGGGGTGTGGGTTGTCTATGGGTG
1045204 TGGTTTGTCTACGGGTGTGGTTTGTCTTGGGGTGTGGGTTGTCTATGGGTG
1 TGGTTTGTCTACGGGTGTGGTTTGTCTTGGGGTGTGGGTTGTCTATGGGTG
*
1045255 TGGTTTGTCTACGGGTGTGGTTTGTCTAT-GGGTGTGGTTTGTCTATGG
1 TGGTTTGTCTACGGGTGTGGTTTGTCT-TGGGGTGTGGGTTGTCTATGG
1045303 CAGATGAAGC
Statistics
Matches: 97, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
51 96 0.99
52 1 0.01
ACGTcount: A:0.05, C:0.08, G:0.43, T:0.44
Consensus pattern (51 bp):
TGGTTTGTCTACGGGTGTGGTTTGTCTTGGGGTGTGGGTTGTCTATGGGTG
Found at i:1045300 original size:17 final size:17
Alignment explanation
Indices: 1045153--1045302 Score: 223
Period size: 17 Copynumber: 8.8 Consensus size: 17
1045143 ATAACAGATA
*
1045153 TGGTTTGTCTACGGGTG
1 TGGTTTGTCTATGGGTG
1045170 TGGTTTGTCT-TGGGGTG
1 TGGTTTGTCTAT-GGGTG
*
1045187 TGGGTTGTCTATGGGTG
1 TGGTTTGTCTATGGGTG
*
1045204 TGGTTTGTCTACGGGTG
1 TGGTTTGTCTATGGGTG
1045221 TGGTTTGTCT-TGGGGTG
1 TGGTTTGTCTAT-GGGTG
*
1045238 TGGGTTGTCTATGGGTG
1 TGGTTTGTCTATGGGTG
*
1045255 TGGTTTGTCTACGGGTG
1 TGGTTTGTCTATGGGTG
1045272 TGGTTTGTCTATGGGTG
1 TGGTTTGTCTATGGGTG
1045289 TGGTTTGTCTATGG
1 TGGTTTGTCTATGG
1045303 CAGATGAAGC
Statistics
Matches: 120, Mismatches: 9, Indels: 8
0.88 0.07 0.06
Matches are distributed among these distances:
17 118 0.98
18 2 0.02
ACGTcount: A:0.05, C:0.08, G:0.43, T:0.44
Consensus pattern (17 bp):
TGGTTTGTCTATGGGTG
Found at i:1056744 original size:2 final size:2
Alignment explanation
Indices: 1056737--1056810 Score: 148
Period size: 2 Copynumber: 37.0 Consensus size: 2
1056727 CAATTGATTC
1056737 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1056779 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1056811 NNNNNNNNNN
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 72 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1063789 original size:2 final size:2
Alignment explanation
Indices: 1063782--1063811 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
1063772 GCCCGTTTAC
1063782 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1063812 TTTTAGAGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1064834 original size:2 final size:2
Alignment explanation
Indices: 1064827--1064853 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1064817 ATCATGTTGT
1064827 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1064854 TTTTCAATNN
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:1064875 original size:2 final size:2
Alignment explanation
Indices: 1064868--1064917 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
1064858 CAATNNNNNN
1064868 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1064910 TC TC TC TC
1 TC TC TC TC
1064918 ATGTCATGAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:1069041 original size:44 final size:44
Alignment explanation
Indices: 1068968--1069855 Score: 1145
Period size: 44 Copynumber: 20.4 Consensus size: 44
1068958 CTTGTCTATA
* *
1068968 TACCGATACTGTTGGTATAAGTATCTCTATGGTTATGTACTGTG
1 TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTG
** * * * * *
1069012 TAGTGATAATGTTGGTTTAAGTATTTCTATGGGTAAGAACTTTG
1 TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTG
1069056 TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTG
1 TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTG
* * * *
1069100 TACCG-----GTT-CTGTAAGCATTTCTAAGGGTATGTACTGTG
1 TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTG
* *
1069138 TACCGATACTGTTGGTATGAGTATTTCTAAGGGTATGTACTGTG
1 TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTG
* * * *
1069182 AACTGATACTGTCGGTATAAGTATTTCTATGGGTTTGTACTGTG
1 TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTG
* * * * *
1069226 TACCGGT-CTGTTGGTATAAGTATTTCTTTGGGTAAGAACTTTG
1 TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTG
*
1069269 TACCGATACTGTTTGTATAAGTATTTCTATGGGTATGTACTGTG
1 TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTG
* *
1069313 TACCGATACTGTTGGTATGAGTATTTCTAAGGGTATGTACTGTG
1 TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTG
* * *
1069357 AACTGATACTGTCGGTATAAGTATTTCTATGGGTATGTACTGTG
1 TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTG
* * *
1069401 TACCGATACTGTTGGTATAAGTATTTCTATGGGTAAGAACTTTG
1 TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTG
* * *
1069445 TACCGATACTGTTGGTATATGTGTTTCTATGGGTTTGTACTGTG
1 TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTG
* * *
1069489 TACCGATACTGTTGGTATAAGTATTTCTATGGGTAAGAACTTTG
1 TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTG
* * *
1069533 TACCGATACTGTTGGTATATGTGTTTCTATGGGTTTGTACTGTG
1 TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTG
* *
1069577 TACCGATACTGTTGGTATAAGTATTTCTATGGGTATATAAGAACTTTG
1 TACCGATACTGTTGGTATAAGTATTTCTATGGG--TAT--GTACTGTG
*
1069625 TACCGATACTGTTGGTATAAGTATTTCTAAGGGTATGTACTGTG
1 TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTG
* * *
1069669 AACTGATACTGTCGGTATAAGTATTTCTATGGGTATGTACTGTG
1 TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTG
* * *
1069713 TACCGATACTGTTGGTATAAGTATTTCTATGGGTAAGAACTTTG
1 TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTG
1069757 TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTG
1 TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTG
* * * * *
1069801 TACCG-----GTT-CTGTAAGCATTTCTATCGGTACGTACTGTG
1 TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTG
1069839 TACCGATACTGTTGGTA
1 TACCGATACTGTTGGTA
1069856 GGTATGTACT
Statistics
Matches: 722, Mismatches: 105, Indels: 34
0.84 0.12 0.04
Matches are distributed among these distances:
38 61 0.08
39 6 0.01
43 42 0.06
44 570 0.79
46 5 0.01
48 38 0.05
ACGTcount: A:0.23, C:0.12, G:0.25, T:0.40
Consensus pattern (44 bp):
TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTG
Found at i:1069428 original size:132 final size:132
Alignment explanation
Indices: 1068968--1070109 Score: 1390
Period size: 132 Copynumber: 8.8 Consensus size: 132
1068958 CTTGTCTATA
* * ** * *
1068968 TACCGATACTGTTGGTATAAGTATCTCTATGGTTATGTACTGTGTAGTGATAATGTTGGTTTAAG
1 TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTGTACCGATACTGTTGGTATAAG
* * *
1069033 TATTTCTATGGGTAAGAACTTTGTACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTG
66 TATTTCTATGGGTATGTACTGTGTACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTG
1069098 TG
131 TG
* * * * *
1069100 TACCG-----GTT-CTGTAAGCATTTCTAAGGGTATGTACTGTGTACCGATACTGTTGGTATGAG
1 TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTGTACCGATACTGTTGGTATAAG
* * * * *
1069159 TATTTCTAAGGGTATGTACTGTGAACTGATACTGTCGGTATAAGTATTTCTATGGGTTTGTACTG
66 TATTTCTATGGGTATGTACTGTGTACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTG
1069224 TG
131 TG
* * * * * *
1069226 TACCGGT-CTGTTGGTATAAGTATTTCTTTGGGTAAGAACTTTGTACCGATACTGTTTGTATAAG
1 TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTGTACCGATACTGTTGGTATAAG
* *
1069290 TATTTCTATGGGTATGTACTGTGTACCGATACTGTTGGTATGAGTATTTCTAAGGGTATGTACTG
66 TATTTCTATGGGTATGTACTGTGTACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTG
1069355 TG
131 TG
* * *
1069357 AACTGATACTGTCGGTATAAGTATTTCTATGGGTATGTACTGTGTACCGATACTGTTGGTATAAG
1 TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTGTACCGATACTGTTGGTATAAG
* * * * * *
1069422 TATTTCTATGGGTAAGAACTTTGTACCGATACTGTTGGTATATGTGTTTCTATGGGTTTGTACTG
66 TATTTCTATGGGTATGTACTGTGTACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTG
1069487 TG
131 TG
* * * *
1069489 TACCGATACTGTTGGTATAAGTATTTCTATGGGTAAGAACTTTGTACCGATACTGTTGGTATATG
1 TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTGTACCGATACTGTTGGTATAAG
* * *
1069554 TGTTTCTATGGGTTTGTACTGTGTACCGATACTGTTGGTATAAGTATTTCTATGGGTATATAAGA
66 TATTTCTATGGGTATGTACTGTGTACCGATACTGTTGGTATAAGTATTTCTATGGG--TAT--GT
*
1069619 ACTTTG
127 ACTGTG
* * * *
1069625 TACCGATACTGTTGGTATAAGTATTTCTAAGGGTATGTACTGTGAACTGATACTGTCGGTATAAG
1 TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTGTACCGATACTGTTGGTATAAG
* * *
1069690 TATTTCTATGGGTATGTACTGTGTACCGATACTGTTGGTATAAGTATTTCTATGGGTAAGAACTT
66 TATTTCTATGGGTATGTACTGTGTACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTG
1069755 TG
131 TG
* *
1069757 TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTGTACCG-----GTT-CTGTAAG
1 TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTGTACCGATACTGTTGGTATAAG
* * *
1069816 CATTTCTATCGGTACGTACTGTGTACCGATACTGTT-G-----G------TA--GGTATGTACTG
66 TATTTCTATGGGTATGTACTGTGTACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTG
1069867 TG
131 TG
* * * *
1069869 AACTGATACTGTCGGTATAAGTATTTCTATGGGTTTGTACTGTGTACCGATACTGTTGGTATAAG
1 TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTGTACCGATACTGTTGGTATAAG
* *
1069934 TATTTCTATGGGTATGTACTGTATACCGATACTGTTGGTATAAGTGTTTCTATGGGTATGTACTG
66 TATTTCTATGGGTATGTACTGTGTACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTG
1069999 TG
131 TG
* * *
1070001 TACCGGT-CTGTTGGTATCAGTATTTCTATGGGTATGTACTGTGTAACGATACTGTTGGTATAAG
1 TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTGTACCGATACTGTTGGTATAAG
* * * **
1070065 TA-TTCT-TGCTAGTGTGTACTCTGTACCGATACTGTTATTATAAGT
66 TATTTCTATG--GGTATGTACTGTGTACCGATACTGTTGGTATAAGT
1070110 TGTCCTAAAG
Statistics
Matches: 862, Mismatches: 116, Indels: 65
0.83 0.11 0.06
Matches are distributed among these distances:
112 55 0.06
114 2 0.00
117 3 0.00
118 37 0.04
119 1 0.00
120 1 0.00
124 1 0.00
125 1 0.00
126 142 0.16
127 5 0.01
129 2 0.00
130 9 0.01
131 189 0.22
132 293 0.34
134 4 0.00
136 117 0.14
ACGTcount: A:0.23, C:0.12, G:0.25, T:0.40
Consensus pattern (132 bp):
TACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTGTACCGATACTGTTGGTATAAG
TATTTCTATGGGTATGTACTGTGTACCGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTG
TG
Found at i:1069865 original size:30 final size:30
Alignment explanation
Indices: 1069826--1069885 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
1069816 CATTTCTATC
* *
1069826 GGTACGTACTGTGTACCGATACTGTTGGTA
1 GGTACGTACTGTGAACCGATACTGTCGGTA
* *
1069856 GGTATGTACTGTGAACTGATACTGTCGGTA
1 GGTACGTACTGTGAACCGATACTGTCGGTA
1069886 TAAGTATTTC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.22, C:0.15, G:0.30, T:0.33
Consensus pattern (30 bp):
GGTACGTACTGTGAACCGATACTGTCGGTA
Found at i:1069901 original size:112 final size:114
Alignment explanation
Indices: 1069761--1069973 Score: 304
Period size: 112 Copynumber: 1.9 Consensus size: 114
1069751 ACTTTGTACC
* *
1069761 GATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTGTACCG-GTT-CTGTAAGCATTTCTA
1 GATACTGTCGGTATAAGTATTTCTATGGGTATGTACTGTGTACCGAGTTGCTATAAGCATTTCTA
*
1069824 TCGGTACGTACTGTGTACCGATACTGTTGGTAGGTATGTACTGTGAACT
66 TCGGTACGTACTGTATACCGATACTGTTGGTAGGTATGTACTGTGAACT
* * *
1069873 GATACTGTCGGTATAAGTATTTCTATGGGTTTGTACTGTGTACCGATACTGTTGGTATAAGTATT
1 GATACTGTCGGTATAAGTATTTCTATGGGTATGTACTGTGTACCG--A--GTTGCTATAAGCATT
* *
1069938 TCTATGGGTATGTACTGTATACCGATACTGTTGGTA
62 TCTATCGGTACGTACTGTATACCGATACTGTTGGTA
1069974 TAAGTGTTTC
Statistics
Matches: 87, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
112 43 0.49
117 3 0.03
118 41 0.47
ACGTcount: A:0.22, C:0.13, G:0.25, T:0.39
Consensus pattern (114 bp):
GATACTGTCGGTATAAGTATTTCTATGGGTATGTACTGTGTACCGAGTTGCTATAAGCATTTCTA
TCGGTACGTACTGTATACCGATACTGTTGGTAGGTATGTACTGTGAACT
Found at i:1069923 original size:44 final size:44
Alignment explanation
Indices: 1069856--1070109 Score: 343
Period size: 44 Copynumber: 5.8 Consensus size: 44
1069846 ACTGTTGGTA
* * *
1069856 GGTATGTACTGTGAACTGATACTGTCGGTATAAGTATTTCTATG
1 GGTATGTACTGTGTACCGATACTGTTGGTATAAGTATTTCTATG
*
1069900 GGTTTGTACTGTGTACCGATACTGTTGGTATAAGTATTTCTATG
1 GGTATGTACTGTGTACCGATACTGTTGGTATAAGTATTTCTATG
* *
1069944 GGTATGTACTGTATACCGATACTGTTGGTATAAGTGTTTCTATG
1 GGTATGTACTGTGTACCGATACTGTTGGTATAAGTATTTCTATG
* *
1069988 GGTATGTACTGTGTACCGGT-CTGTTGGTATCAGTATTTCTATG
1 GGTATGTACTGTGTACCGATACTGTTGGTATAAGTATTTCTATG
*
1070031 GGTATGTACTGTGTAACGATACTGTTGGTATAAGTA-TTCT-TG
1 GGTATGTACTGTGTACCGATACTGTTGGTATAAGTATTTCTATG
* * * **
1070073 CTAGTGTGTACTCTGTACCGATACTGTTATTATAAGT
1 --GGTATGTACTGTGTACCGATACTGTTGGTATAAGT
1070110 TGTCCTAAAG
Statistics
Matches: 187, Mismatches: 20, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
42 2 0.01
43 43 0.23
44 142 0.76
ACGTcount: A:0.22, C:0.12, G:0.25, T:0.41
Consensus pattern (44 bp):
GGTATGTACTGTGTACCGATACTGTTGGTATAAGTATTTCTATG
Found at i:1069999 original size:200 final size:204
Alignment explanation
Indices: 1069656--1070060 Score: 674
Period size: 200 Copynumber: 2.0 Consensus size: 204
1069646 TATTTCTAAG
1069656 GGTATGTACTGTGAACTGATACTGTCGGTATAAGTATTTCTATGGGTATGTACTGTGTACCGATA
1 GGTATGTACTGTGAACTGATACTGTCGGTATAAGTATTTCTATGGGTATGTACTGTGTACCGATA
* *
1069721 CTGTTGGTATAAGTATTTCTATGGGTAAGAACTTTGTACCGATACTGTTGGTATAAGTATTTCTA
66 CTGTTGGTATAAGTATTTCTATGGGTAAGAACTGTATACCGATACTGTTGGTATAAGTATTTCTA
*
1069786 TGGGTATGTACTGTGTACCGGT-T-CT-GTA-AGCATTTCTATCGGTACGTACTGTGTACCGATA
131 TGGGTATGTACTGTGTACCGGTCTGCTGGTACAGCATTTCTATCGGTACGTACTGTGTAACGATA
1069847 CTGTTGGTA
196 CTGTTGGTA
*
1069856 GGTATGTACTGTGAACTGATACTGTCGGTATAAGTATTTCTATGGGTTTGTACTGTGTACCGATA
1 GGTATGTACTGTGAACTGATACTGTCGGTATAAGTATTTCTATGGGTATGTACTGTGTACCGATA
* * *
1069921 CTGTTGGTATAAGTATTTCTATGGGTATGTACTGTATACCGATACTGTTGGTATAAGTGTTTCTA
66 CTGTTGGTATAAGTATTTCTATGGGTAAGAACTGTATACCGATACTGTTGGTATAAGTATTTCTA
* * * *
1069986 TGGGTATGTACTGTGTACCGGTCTGTTGGTATCAGTATTTCTATGGGTATGTACTGTGTAACGAT
131 TGGGTATGTACTGTGTACCGGTCTGCTGGTA-CAGCATTTCTATCGGTACGTACTGTGTAACGAT
1070051 ACTGTTGGTA
195 ACTGTTGGTA
1070061 TAAGTATTCT
Statistics
Matches: 189, Mismatches: 11, Indels: 5
0.92 0.05 0.02
Matches are distributed among these distances:
200 146 0.77
201 1 0.01
202 1 0.01
203 3 0.02
205 38 0.20
ACGTcount: A:0.22, C:0.13, G:0.26, T:0.40
Consensus pattern (204 bp):
GGTATGTACTGTGAACTGATACTGTCGGTATAAGTATTTCTATGGGTATGTACTGTGTACCGATA
CTGTTGGTATAAGTATTTCTATGGGTAAGAACTGTATACCGATACTGTTGGTATAAGTATTTCTA
TGGGTATGTACTGTGTACCGGTCTGCTGGTACAGCATTTCTATCGGTACGTACTGTGTAACGATA
CTGTTGGTA
Found at i:1070054 original size:87 final size:88
Alignment explanation
Indices: 1069856--1070109 Score: 345
Period size: 87 Copynumber: 2.9 Consensus size: 88
1069846 ACTGTTGGTA
* *
1069856 GGTATGTACTGTG-AACTGATACTGTCGGTATAAGTATTTCTATGGGTTTGTACTGTGTACCGAT
1 GGTATGTACTGTGTAAC-GATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTGTACCGAT
1069920 ACTGTTGGTATAAGTATTTCTATG
65 ACTGTTGGTATAAGTATTTCTATG
* * * *
1069944 GGTATGTACTGTATACCGATACTGTTGGTATAAGTGTTTCTATGGGTATGTACTGTGTACCGGT-
1 GGTATGTACTGTGTAACGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTGTACCGATA
*
1070008 CTGTTGGTATCAGTATTTCTATG
66 CTGTTGGTATAAGTATTTCTATG
* * *
1070031 GGTATGTACTGTGTAACGATACTGTTGGTATAAGTA-TTCT-TGCTAGTGTGTACTCTGTACCGA
1 GGTATGTACTGTGTAACGATACTGTTGGTATAAGTATTTCTATG--GGTATGTACTGTGTACCGA
**
1070094 TACTGTTATTATAAGT
64 TACTGTTGGTATAAGT
1070110 TGTCCTAAAG
Statistics
Matches: 145, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
85 2 0.01
86 4 0.03
87 71 0.49
88 66 0.46
89 2 0.01
ACGTcount: A:0.22, C:0.12, G:0.25, T:0.41
Consensus pattern (88 bp):
GGTATGTACTGTGTAACGATACTGTTGGTATAAGTATTTCTATGGGTATGTACTGTGTACCGATA
CTGTTGGTATAAGTATTTCTATG
Found at i:1070083 original size:131 final size:132
Alignment explanation
Indices: 1069856--1070109 Score: 352
Period size: 131 Copynumber: 1.9 Consensus size: 132
1069846 ACTGTTGGTA
* * *
1069856 GGTATGTACTGTGAACTGATACTGTCGGTATAAGTATTTCTATGGGTTTGTACTGTGTACCGATA
1 GGTATGTACTGTGAACCGATACTGTCGGTATAAGTATTTCTATGGGTATGTACTGTGTAACGATA
* * *
1069921 CTGTTGGTATAAGTATTTCTATGGGTATGTACTGTATACCGATACTGTTGGTATAAGTGTTTCTA
66 CTGTTGGTATAAGTATTTCTATGAGTATGTACTCTATACCGATACTGTTAGTATAAGTGTTTCTA
1069986 TG
131 TG
* * * *
1069988 GGTATGTACTGTGTACCGGT-CTGTTGGTATCAGTATTTCTATGGGTATGTACTGTGTAACGATA
1 GGTATGTACTGTGAACCGATACTGTCGGTATAAGTATTTCTATGGGTATGTACTGTGTAACGATA
* * *
1070052 CTGTTGGTATAAGTA-TTCT-TGCTAGTGTGTACTCTGTACCGATACTGTTATTATAAGT
66 CTGTTGGTATAAGTATTTCTATG--AGTATGTACTCTATACCGATACTGTTAGTATAAGT
1070110 TGTCCTAAAG
Statistics
Matches: 107, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
129 2 0.02
130 4 0.04
131 84 0.79
132 17 0.16
ACGTcount: A:0.22, C:0.12, G:0.25, T:0.41
Consensus pattern (132 bp):
GGTATGTACTGTGAACCGATACTGTCGGTATAAGTATTTCTATGGGTATGTACTGTGTAACGATA
CTGTTGGTATAAGTATTTCTATGAGTATGTACTCTATACCGATACTGTTAGTATAAGTGTTTCTA
TG
Found at i:1071099 original size:2 final size:2
Alignment explanation
Indices: 1071094--1071157 Score: 119
Period size: 2 Copynumber: 32.0 Consensus size: 2
1071084 TAGTATATAT
1071094 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
*
1071136 TC TT TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC
1071158 CGAATATGAA
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 60 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:1074801 original size:10 final size:10
Alignment explanation
Indices: 1074786--1074824 Score: 55
Period size: 10 Copynumber: 4.1 Consensus size: 10
1074776 TCGCCGCGGG
1074786 GTTTTACATT
1 GTTTTACATT
1074796 GTTTTACATT
1 GTTTTACATT
*
1074806 GTTTTAC-GT
1 GTTTTACATT
1074815 GTTTT-CATT
1 GTTTTACATT
1074824 G
1 G
1074825 ACAAGAATGC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
8 1 0.04
9 8 0.31
10 17 0.65
ACGTcount: A:0.15, C:0.10, G:0.15, T:0.59
Consensus pattern (10 bp):
GTTTTACATT
Found at i:1075337 original size:47 final size:47
Alignment explanation
Indices: 1075283--1075570 Score: 558
Period size: 47 Copynumber: 6.1 Consensus size: 47
1075273 GGAAAATAAC
1075283 CAAAAGGAATAGACAACCACAAGTAAGACAGCAAGAGTCAAAGACAA
1 CAAAAGGAATAGACAACCACAAGTAAGACAGCAAGAGTCAAAGACAA
*
1075330 CAAAAGGAATAGACAACCACAAGTAAGACAGAAAGAGTCAAAGACAA
1 CAAAAGGAATAGACAACCACAAGTAAGACAGCAAGAGTCAAAGACAA
1075377 CAAAAGGAATAGACAACCACAAGTAAGACAGCAAGAGTCAAAGACAA
1 CAAAAGGAATAGACAACCACAAGTAAGACAGCAAGAGTCAAAGACAA
1075424 CAAAAGGAATAGACAACCACAAGTAAGACAGCAAGAGTCAAAGACAA
1 CAAAAGGAATAGACAACCACAAGTAAGACAGCAAGAGTCAAAGACAA
1075471 CAAAAGGAATAGACAACCACAAGTAAGACAGCAAGAGTCAAAGACAA
1 CAAAAGGAATAGACAACCACAAGTAAGACAGCAAGAGTCAAAGACAA
*
1075518 CAAAAGGGATAGACAACCACAAGTAAGACAGCAAGAGTCAAAGACAA
1 CAAAAGGAATAGACAACCACAAGTAAGACAGCAAGAGTCAAAGACAA
1075565 CAAAAG
1 CAAAAG
1075571 NNNNNNNNNN
Statistics
Matches: 238, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 238 1.00
ACGTcount: A:0.56, C:0.19, G:0.19, T:0.06
Consensus pattern (47 bp):
CAAAAGGAATAGACAACCACAAGTAAGACAGCAAGAGTCAAAGACAA
Found at i:1077613 original size:17 final size:17
Alignment explanation
Indices: 1077593--1077627 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
1077583 ACGAGAAAAC
*
1077593 CAAGTATGAGAGACAAT
1 CAAGTATGAAAGACAAT
*
1077610 CAAGTGTGAAAGACAAT
1 CAAGTATGAAAGACAAT
1077627 C
1 C
1077628 GGTTGCTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.46, C:0.14, G:0.23, T:0.17
Consensus pattern (17 bp):
CAAGTATGAAAGACAAT
Found at i:1077706 original size:12 final size:12
Alignment explanation
Indices: 1077685--1077714 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
1077675 ACACCAAATA
*
1077685 ATATACAATTAT
1 ATATATAATTAT
1077697 ATATATAATTAT
1 ATATATAATTAT
1077709 ATATAT
1 ATATAT
1077715 TACTTAATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (12 bp):
ATATATAATTAT
Found at i:1078125 original size:30 final size:30
Alignment explanation
Indices: 1078091--1078181 Score: 155
Period size: 30 Copynumber: 3.0 Consensus size: 30
1078081 AATACGTTGC
*
1078091 CGGTCCAATAGATTGCAGTCTATTGACCGG
1 CGGTCCAATAGATCGCAGTCTATTGACCGG
1078121 CGGTCCAATAGATCGCAGTCTATTGACCGG
1 CGGTCCAATAGATCGCAGTCTATTGACCGG
* *
1078151 CAGTCCAATAGATCGAAGTCTATTGACCGG
1 CGGTCCAATAGATCGCAGTCTATTGACCGG
1078181 C
1 C
1078182 AATTCAAAAT
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 58 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.24
Consensus pattern (30 bp):
CGGTCCAATAGATCGCAGTCTATTGACCGG
Found at i:1078155 original size:15 final size:15
Alignment explanation
Indices: 1078105--1078182 Score: 52
Period size: 15 Copynumber: 5.2 Consensus size: 15
1078095 CCAATAGATT
1078105 GCAGTCTATTGACCG
1 GCAGTCTATTGACCG
* * * *
1078120 GCGGTCCAATAGATC-
1 GCAGT-CTATTGACCG
1078135 GCAGTCTATTGACCG
1 GCAGTCTATTGACCG
* * *
1078150 GCAGTCCAATAGATC-
1 GCAGT-CTATTGACCG
*
1078165 GAAGTCTATTGACCG
1 GCAGTCTATTGACCG
1078180 GCA
1 GCA
1078183 ATTCAAAATA
Statistics
Matches: 43, Mismatches: 16, Indels: 8
0.64 0.24 0.12
Matches are distributed among these distances:
14 12 0.28
15 19 0.44
16 12 0.28
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.23
Consensus pattern (15 bp):
GCAGTCTATTGACCG
Found at i:1084104 original size:21 final size:22
Alignment explanation
Indices: 1084073--1084113 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
1084063 GCTGTAAGAA
1084073 GAACACAGAGGAGGGGGCGGTG
1 GAACACAGAGGAGGGGGCGGTG
1084095 GAACA-AGAGGAGGGGGCGG
1 GAACACAGAGGAGGGGGCGG
1084114 CCAGCAAGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.29, C:0.12, G:0.56, T:0.02
Consensus pattern (22 bp):
GAACACAGAGGAGGGGGCGGTG
Found at i:1086582 original size:2 final size:2
Alignment explanation
Indices: 1086575--1086630 Score: 112
Period size: 2 Copynumber: 28.0 Consensus size: 2
1086565 AGACTGAAAA
1086575 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1086617 TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC
1086631 ATGCTTTTAC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:1103099 original size:28 final size:28
Alignment explanation
Indices: 1103045--1103101 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
1103035 ACTTGATATA
*
1103045 TACATGTGATACATAAACACAGTCTGTT
1 TACATGTGATACATAAACACAGCCTGTT
* * **
1103073 TACATGTTATATATAAACATGGCCTGTT
1 TACATGTGATACATAAACACAGCCTGTT
1103101 T
1 T
1103102 TCTTGAGATT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (28 bp):
TACATGTGATACATAAACACAGCCTGTT
Found at i:1105456 original size:178 final size:177
Alignment explanation
Indices: 1105157--1105511 Score: 701
Period size: 178 Copynumber: 2.0 Consensus size: 177
1105147 TCACTGTCTG
1105157 TATCTTTGTATTCTTTACTAAGTTCACAGTTCTGACTCTGTAATCAGTAAAAACTAGACCCCCAC
1 TATCTTTGTATTCTTTACTAAGTTCACAGTTCTGACTCTGTAATCAGTAAAAACTAGACCCCCAC
1105222 TCCTTGTCACTGCTATGTCCCGTGGCATGTTCCCTGACCATGTTTGGATGGACTTCAGTAGTTCC
66 TCCTTGTCACTGCTATGTCCCGTGGCATGTTCCCTGACCATGTTTGGATGGACTTCAGTAGTTCC
1105287 CCCTGGAGGTTGTAGAGGTTCATCTTGTTGTTAAAACAACCACACGT
131 CCCTGGAGGTTGTAGAGGTTCATCTTGTTGTTAAAACAACCACACGT
1105334 NTATCTTTGTATTCTTTACTAAGTTCACAGTTCTGACTCTGTAATCAGTAAAAACTAGACCCCCA
1 -TATCTTTGTATTCTTTACTAAGTTCACAGTTCTGACTCTGTAATCAGTAAAAACTAGACCCCCA
1105399 CTCCTTGTCACTGCTATGTCCCGTGGCATGTTCCCTGACCATGTTTGGATGGACTTCAGTAGTTC
65 CTCCTTGTCACTGCTATGTCCCGTGGCATGTTCCCTGACCATGTTTGGATGGACTTCAGTAGTTC
1105464 CCCCTGGAGGTTGTAGAGGTTCATCTTGTTGTTAAAACAACCACACGT
130 CCCCTGGAGGTTGTAGAGGTTCATCTTGTTGTTAAAACAACCACACGT
1105512 CCATACTTCT
Statistics
Matches: 177, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
178 177 1.00
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.34
Consensus pattern (177 bp):
TATCTTTGTATTCTTTACTAAGTTCACAGTTCTGACTCTGTAATCAGTAAAAACTAGACCCCCAC
TCCTTGTCACTGCTATGTCCCGTGGCATGTTCCCTGACCATGTTTGGATGGACTTCAGTAGTTCC
CCCTGGAGGTTGTAGAGGTTCATCTTGTTGTTAAAACAACCACACGT
Found at i:1114183 original size:2 final size:2
Alignment explanation
Indices: 1114176--1114207 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
1114166 AGTCATGGAA
1114176 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1114208 GGGGGGGCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1116601 original size:2 final size:2
Alignment explanation
Indices: 1116594--1116648 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
1116584 TCATCTAAAA
1116594 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1116636 TC TC TC TC TC TC T
1 TC TC TC TC TC TC T
1116649 GTGTGTTCGG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Done.