oyster.v9_M.fa.s41.2.7.7.80.10.50.500.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold334
Parameters: 2 7 7 80 10 50 500
Length:  1116604

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 617 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
569664--569753	42	2.1	42	95	0	162	31	20	17	31	1.96
573124--573653	57	9.6	57	78	7	445	31	17	19	31	1.95
573124--573647	165	3.2	162	86	4	647	31	17	19	31	1.95
573237--573647	164	2.5	163	90	3	630	32	17	18	30	1.95
582727--582770	19	2.3	19	100	0	88	31	4	20	43	1.72
583606--583631	11	2.4	11	100	0	52	42	19	7	30	1.79
584313--584362	2	25.0	2	100	0	100	0	50	0	50	1.00
584491--584516	2	13.0	2	100	0	52	0	50	0	50	1.00
587531--587750	57	3.7	57	76	9	217	30	18	18	33	1.95
593993--594071	6	12.8	6	94	5	140	31	51	0	16	1.44
595942--596019	6	13.3	6	75	15	74	34	53	1	10	1.43
595960--596019	11	5.4	11	80	9	59	38	50	1	10	1.46
595943--596019	28	2.7	28	82	13	86	35	53	1	10	1.44
595942--596019	22	3.7	21	78	10	79	34	53	1	10	1.43
599446--599480	6	5.8	6	96	0	61	14	0	51	34	1.42
599622--599887	37	7.1	37	75	16	235	31	40	1	27	1.65
599649--599749	46	2.2	46	87	0	139	33	38	0	26	1.63
599699--599765	30	2.2	32	79	15	88	29	38	1	29	1.66
599758--599809	14	3.6	14	72	10	50	30	34	1	32	1.69
599622--599783	83	2.0	83	87	2	236	32	39	1	26	1.64
599752--599874	30	3.9	30	77	14	102	29	39	1	29	1.66
599695--599887	104	1.9	104	92	4	327	29	39	2	28	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
599716--599864	67	2.2	67	89	2	228	28	40	2	28	1.67
611077--612057	436	2.2	435	85	3	1276	35	15	17	31	1.91
620132--620185	19	2.8	19	74	0	63	24	22	14	38	1.91
623048--623274	45	5.0	45	92	1	375	26	28	12	33	1.92
631593--631630	4	9.8	4	88	5	51	31	26	42	0	1.56
631590--631630	16	2.6	16	92	3	66	34	26	39	0	1.57
635773--635815	2	21.5	2	100	0	86	51	0	48	0	1.00
639599--640004	47	8.6	47	90	0	614	24	22	22	30	1.99
639968--640157	30	6.2	30	68	18	133	23	20	22	33	1.97
639921--640080	77	2.1	76	91	1	257	25	20	20	33	1.97
639993--640128	47	2.9	47	92	1	227	22	22	22	33	1.98
640040--640358	77	4.2	77	93	0	523	24	21	21	33	1.97
640169--640234	30	2.2	29	89	2	96	24	15	22	37	1.92
639822--640944	124	9.0	124	79	9	641	24	21	21	32	1.98
640246--640435	30	6.2	30	67	18	124	23	20	22	33	1.97
640271--641017	47	15.3	47	73	15	403	24	22	21	31	1.98
640318--640560	77	3.2	77	91	0	398	23	20	22	32	1.98
640447--640512	30	2.2	29	94	2	114	22	16	24	36	1.94
640635--640705	34	2.1	34	86	0	97	23	22	19	33	1.97
640595--640752	81	2.0	81	92	0	262	26	22	19	31	1.98
640793--640858	30	2.2	29	94	2	114	22	16	24	36	1.94
640395--641253	346	2.5	346	99	0	1709	25	21	21	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
640741--640906	77	2.2	77	90	1	253	24	21	22	32	1.98
640271--641251	299	3.3	291	81	7	1054	24	21	21	32	1.98
640818--641176	94	4.0	93	80	10	427	25	21	21	32	1.98
640981--641051	34	2.1	34	86	0	97	23	22	19	33	1.97
640941--641098	81	2.0	81	93	0	271	26	22	19	31	1.98
641022--641175	47	3.3	46	83	6	193	25	22	20	31	1.98
641139--641204	30	2.2	29	94	2	114	22	16	24	36	1.94
641087--641252	77	2.2	77	91	1	262	24	20	22	33	1.97
644477--644515	7	5.4	7	87	6	60	33	41	25	0	1.56
644476--644515	15	2.8	14	92	7	71	35	40	25	0	1.56
645841--645911	20	3.6	20	72	14	67	52	14	1	32	1.50
645880--645904	13	1.9	13	100	0	50	44	16	0	40	1.47
646134--646263	15	8.1	15	72	18	93	46	12	3	37	1.60
646220--646254	18	1.9	18	94	0	61	51	8	0	40	1.33
646136--646342	98	2.1	98	90	4	321	45	11	5	37	1.63
646142--646308	50	3.4	47	77	8	165	44	13	4	37	1.64
646179--646325	15	9.3	15	71	15	73	44	12	4	37	1.64
646301--646367	32	2.1	32	82	0	80	46	7	8	37	1.64
646463--646497	18	1.9	18	88	11	54	48	17	2	31	1.61
646568--646620	20	2.6	20	85	5	72	39	15	3	41	1.65
647298--647337	19	2.1	19	90	0	62	37	37	2	22	1.68
647281--647671	177	2.2	177	97	0	728	32	29	16	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
647673--647710	6	6.3	6	88	11	60	18	50	31	0	1.47
652896--652936	2	21.0	2	95	5	75	48	0	51	0	1.00
653788--654229	31	14.8	31	82	7	486	33	33	25	7	1.84
653788--654398	62	9.9	62	75	13	470	33	33	25	7	1.85
653788--654229	85	4.9	92	83	4	473	33	33	25	7	1.84
654067--654118	23	2.3	23	89	0	77	34	30	28	5	1.81
654039--654149	54	2.1	54	89	0	168	34	32	27	6	1.82
654214--654246	17	1.9	17	100	0	66	33	18	42	6	1.75
654129--654280	48	3.0	48	89	5	223	33	30	29	5	1.81
654093--654398	164	1.8	166	87	5	454	32	32	27	6	1.83
654231--654398	31	5.4	31	86	0	228	32	32	27	7	1.85
656582--657221	43	15.0	43	87	5	863	41	15	18	24	1.89
665918--665966	23	2.1	23	88	7	73	16	28	32	22	1.95
667464--667531	31	2.2	32	91	2	111	16	25	25	33	1.95
668076--668105	11	2.7	11	94	0	51	43	0	3	53	1.17
668407--668637	60	3.8	60	96	0	417	25	12	33	27	1.92
672898--672967	36	1.9	36	85	0	95	27	21	10	41	1.85
673042--673310	62	4.3	62	97	0	475	23	24	14	36	1.93
675481--675810	164	2.0	164	96	0	615	31	17	12	38	1.88
676573--676604	15	2.1	15	94	0	55	21	28	25	25	1.99
682857--682920	21	3.0	21	97	0	119	39	9	29	21	1.85
685787--685882	47	2.0	47	89	0	147	28	21	23	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
685805--685892	47	1.9	46	88	6	135	27	22	23	26	2.00
686803--686874	37	1.9	37	85	0	99	37	18	13	30	1.89
695112--695161	18	2.8	18	76	11	57	26	24	6	44	1.76
696924--696962	5	7.8	5	94	0	60	41	33	5	20	1.74
696980--697059	21	3.8	21	94	0	133	41	26	7	25	1.81
696983--697068	21	3.8	24	89	9	96	44	24	8	23	1.80
698421--698459	2	19.5	2	100	0	78	51	0	48	0	1.00
704347--704399	2	26.5	2	100	0	106	50	0	49	0	1.00
704455--704482	2	14.0	2	100	0	56	50	0	50	0	1.00
705397--706060	28	24.5	28	76	14	468	34	18	17	29	1.94
705469--705660	99	1.9	99	93	0	330	33	19	16	29	1.94
705604--705795	104	1.8	104	91	2	314	33	18	17	30	1.94
705784--705905	42	2.9	42	85	3	156	34	18	14	31	1.92
708162--708282	21	5.8	21	89	0	188	37	31	15	15	1.89
708168--708293	42	3.0	42	92	0	207	36	30	16	15	1.91
708144--708286	63	2.3	63	85	3	198	34	31	17	16	1.92
708714--708751	15	2.5	15	91	0	58	47	2	39	10	1.52
710536--710611	4	19.0	4	82	5	91	69	1	5	23	1.16
710522--710611	16	5.6	16	75	10	67	66	2	6	24	1.27
714922--714956	4	8.8	4	87	0	52	0	45	22	31	1.53
714926--714976	16	3.2	16	85	0	66	1	39	21	37	1.65
714922--714980	20	3.0	20	87	5	75	1	38	22	37	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
716034--716100	7	9.6	7	76	0	71	38	14	19	26	1.91
721821--721852	4	8.0	4	92	0	55	0	46	25	28	1.53
721816--721848	16	2.1	16	94	0	57	0	42	27	30	1.56
723268--723391	21	5.9	21	86	3	169	32	31	20	16	1.94
723268--723388	43	2.9	42	86	6	165	33	31	19	16	1.94
737385--737424	11	3.7	11	86	3	55	35	10	30	25	1.88
737495--737544	11	4.6	11	95	2	84	28	30	10	32	1.89
737537--737597	22	2.8	22	78	9	70	18	24	14	42	1.88
737927--737969	2	21.5	2	100	0	86	0	48	0	51	1.00
743363--743480	59	2.0	58	98	1	227	39	18	13	27	1.88

Tables:   1   2   3   4   5   6