Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04
Sequence: scaffold334
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1116604
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.28
Warning! 144470 characters in sequence are not A, C, G, or T
File 5 of 6
Found at i:569723 original size:42 final size:42
Alignment explanation
Indices: 569664--569753 Score: 162
Period size: 42 Copynumber: 2.1 Consensus size: 42
569654 ACCCACACTG
*
569664 TATAGCTCAGTGCTGATACTTAAACTATGACAGACTGTCTGA
1 TATAGCTCAGTGCTGATACCTAAACTATGACAGACTGTCTGA
*
569706 TATAGCTCAGTGCTGATACCTAAACTATGACAGACTGTCTTA
1 TATAGCTCAGTGCTGATACCTAAACTATGACAGACTGTCTGA
569748 TATAGC
1 TATAGC
569754 GACAGTATAG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (42 bp):
TATAGCTCAGTGCTGATACCTAAACTATGACAGACTGTCTGA
Found at i:573299 original size:57 final size:57
Alignment explanation
Indices: 573124--573653 Score: 445
Period size: 57 Copynumber: 9.6 Consensus size: 57
573114 ATGTATACGT
* * * *
573124 ATGAAGCTTACCAGAGTCTGACATAGCACTGTC--ATAGCCTGCCTTTGTTATCATG
1 ATGAAGCTTACCAGAATCTGACATAGCAGTGACATATAGCCTGTCTTTGTTATCATG
* * ** ** * ** * *
573179 ATAAAACTTACCAGGGTCTGATGTATCTTTGAC--ATAG-TTGGT-TATTGTAATCATG
1 ATGAAGCTTACCAGAATCTGACATAGCAGTGACATATAGCCT-GTCT-TTGTTATCATG
* *
573234 ATGAAGCTTACAAGAATCTGACATAGCATTGACATATAGCCTGTCTTTGTTATCATG
1 ATGAAGCTTACCAGAATCTGACATAGCAGTGACATATAGCCTGTCTTTGTTATCATG
* * * *
573291 ATGAAGCTTACCAGAATCTGACATAGCAGT-A-ACATAG-CGGGCTTTGTTATCAAG
1 ATGAAGCTTACCAGAATCTGACATAGCAGTGACATATAGCCTGTCTTTGTTATCATG
* * * * * * *
573345 ATGAAGCTTACCAGAGTCTGATATAGCAGT-A-ACATAG-CGGGCTTTGTTATGAAG
1 ATGAAGCTTACCAGAATCTGACATAGCAGTGACATATAGCCTGTCTTTGTTATCATG
* * * * *
573399 ATTAAGCTTACCAGAGTCTGATATAGCATTGACATGTAGCCTGTCTTTGTTATCATG
1 ATGAAGCTTACCAGAATCTGACATAGCAGTGACATATAGCCTGTCTTTGTTATCATG
* *
573456 ATGAAGCTTACCAGAATCTGACATAGCAGT-A-ACATAG-CAG-CTTTGTTATCAT-
1 ATGAAGCTTACCAGAATCTGACATAGCAGTGACATATAGCCTGTCTTTGTTATCATG
* * * * * * *
573508 -T-AAGCTTACCAGAATCTGACATAGCAGTAACATAGCAGCAT-T-ATTATCATAATG
1 ATGAAGCTTACCAGAATCTGACATAGCAGTGACATA-TAGCCTGTCTTTGTTATCATG
* * * * *
573562 ATTAAAGCTTACAAGAATCTGACATAGCATTGACATGTAGCCTGTCTTTGTTATTATG
1 A-TGAAGCTTACCAGAATCTGACATAGCAGTGACATATAGCCTGTCTTTGTTATCATG
*
573620 ATGAAGCTTACCAGAATCTGACATAGCACTGACA
1 ATGAAGCTTACCAGAATCTGACATAGCAGTGACA
573654 GAGCGGGTTC
Statistics
Matches: 387, Mismatches: 68, Indels: 38
0.78 0.14 0.08
Matches are distributed among these distances:
50 27 0.07
51 2 0.01
52 2 0.01
53 21 0.05
54 97 0.25
55 73 0.19
56 11 0.03
57 143 0.37
58 11 0.03
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (57 bp):
ATGAAGCTTACCAGAATCTGACATAGCAGTGACATATAGCCTGTCTTTGTTATCATG
Found at i:573441 original size:165 final size:162
Alignment explanation
Indices: 573124--573647 Score: 647
Period size: 165 Copynumber: 3.2 Consensus size: 162
573114 ATGTATACGT
* * ** * *
573124 ATGAAGCTTACCAGAGTCTGACATAGCACTGTCATAGCCTGCCTTTGTTATCATGATAAAACTTA
1 ATGAAGCTTACCAGAATCTGACATAGCAGTAACATAG-C-GGCTTTGTTATCA-GATAAAGCTTA
* * * ** * * * * * *
573189 CCAGGGTCTGATGTATCTTTGACATAGTTGGTTATTGTAATCATGATGAAGCTTACAAGAATCTG
63 CCAGAGTCTGATATAGCAGTAACATAG-CGGCT-TTGTTATCAAGATTAAGCTTACAAGAATCTG
*
573254 ACATAGCATTGACATATAGCCTGTCTTTGTTATCATG
126 ACATAGCATTGACATGTAGCCTGTCTTTGTTATCATG
*
573291 ATGAAGCTTACCAGAATCTGACATAGCAGTAACATAGCGGGCTTTGTTATCAAGATGAAGCTTAC
1 ATGAAGCTTACCAGAATCTGACATAGCAGTAACATAGC-GGCTTTGTTATC-AGATAAAGCTTAC
* * * *
573356 CAGAGTCTGATATAGCAGTAACATAGCGGGCTTTGTTATGAAGATTAAGCTTACCAGAGTCTGAT
64 CAGAGTCTGATATAGCAGTAACATAGC-GGCTTTGTTATCAAGATTAAGCTTACAAGAATCTGAC
573421 ATAGCATTGACATGTAGCCTGTCTTTGTTATCATG
128 ATAGCATTGACATGTAGCCTGTCTTTGTTATCATG
* *
573456 ATGAAGCTTACCAGAATCTGACATAGCAGTAACATAGCAGCTTTGTTATC--ATTAAGCTTACCA
1 ATGAAGCTTACCAGAATCTGACATAGCAGTAACATAGCGGCTTTGTTATCAGATAAAGCTTACCA
* * * * *
573519 GAATCTGACATAGCAGTAACATAGCAGCATTATTATCATAATGATTAAAGCTTACAAGAATCTGA
66 GAGTCTGATATAGCAGTAACATAGCGGCTTTGTTATC--AA-GATT-AAGCTTACAAGAATCTGA
*
573584 CATAGCATTGACATGTAGCCTGTCTTTGTTATTATG
127 CATAGCATTGACATGTAGCCTGTCTTTGTTATCATG
573620 ATGAAGCTTACCAGAATCTGACATAGCA
1 ATGAAGCTTACCAGAATCTGACATAGCA
573648 CTGACAGAGC
Statistics
Matches: 315, Mismatches: 36, Indels: 15
0.86 0.10 0.04
Matches are distributed among these distances:
160 8 0.03
161 35 0.11
162 2 0.01
163 4 0.01
164 89 0.28
165 98 0.31
166 45 0.14
167 34 0.11
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (162 bp):
ATGAAGCTTACCAGAATCTGACATAGCAGTAACATAGCGGCTTTGTTATCAGATAAAGCTTACCA
GAGTCTGATATAGCAGTAACATAGCGGCTTTGTTATCAAGATTAAGCTTACAAGAATCTGACATA
GCATTGACATGTAGCCTGTCTTTGTTATCATG
Found at i:573608 original size:164 final size:163
Alignment explanation
Indices: 573237--573647 Score: 630
Period size: 164 Copynumber: 2.5 Consensus size: 163
573227 AATCATGATG
*
573237 AAGCTTACAAGAATCTGACATAGCATTGACATATAGCCTGTCTTTGTTATCATGATGAAGCTTAC
1 AAGCTTACAAGAATCTGACATAGCATTGACATGTAGCCTGTCTTTGTTATCATGATGAAGCTTAC
* * *
573302 CAGAATCTGACATAGCAGTAACATAGCGGGCTTTGTTATCAAGATGAAGCTTACCAGAGTCTGAT
66 CAGAATCTGACATAGCAGTAACATAGCGAGCTTTGTTATC-A-ATGAAGCTTACCAGAATCTGAC
* * *
573367 ATAGCAGTAACATAGCGGGCTTTGTTATGAAGATT
129 ATAGCAGTAACATAGCGAGCATTATTATGAAGATT
* * *
573402 AAGCTTACCAGAGTCTGATATAGCATTGACATGTAGCCTGTCTTTGTTATCATGATGAAGCTTAC
1 AAGCTTACAAGAATCTGACATAGCATTGACATGTAGCCTGTCTTTGTTATCATGATGAAGCTTAC
*
573467 CAGAATCTGACATAGCAGTAACATAGC-AGCTTTGTTATC-ATTAAGCTTACCAGAATCTGACAT
66 CAGAATCTGACATAGCAGTAACATAGCGAGCTTTGTTATCAATGAAGCTTACCAGAATCTGACAT
*
573530 AGCAGTAACATAGC-AGCATTATTATCATAATGATT
131 AGCAGTAACATAGCGAGCATTATTAT--GAA-GATT
*
573565 AAAGCTTACAAGAATCTGACATAGCATTGACATGTAGCCTGTCTTTGTTATTATGATGAAGCTTA
1 -AAGCTTACAAGAATCTGACATAGCATTGACATGTAGCCTGTCTTTGTTATCATGATGAAGCTTA
573630 CCAGAATCTGACATAGCA
65 CCAGAATCTGACATAGCA
573648 CTGACAGAGC
Statistics
Matches: 226, Mismatches: 16, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
160 8 0.04
161 35 0.15
162 2 0.01
163 4 0.02
164 89 0.39
165 88 0.39
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (163 bp):
AAGCTTACAAGAATCTGACATAGCATTGACATGTAGCCTGTCTTTGTTATCATGATGAAGCTTAC
CAGAATCTGACATAGCAGTAACATAGCGAGCTTTGTTATCAATGAAGCTTACCAGAATCTGACAT
AGCAGTAACATAGCGAGCATTATTATGAAGATT
Found at i:582751 original size:19 final size:19
Alignment explanation
Indices: 582727--582770 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
582717 GTTTCCAAAA
582727 ATGTTACATGTATATGAGT
1 ATGTTACATGTATATGAGT
582746 ATGTTACATGTATATGAGT
1 ATGTTACATGTATATGAGT
582765 ATGTTA
1 ATGTTA
582771 TATAAAAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.32, C:0.05, G:0.20, T:0.43
Consensus pattern (19 bp):
ATGTTACATGTATATGAGT
Found at i:583622 original size:11 final size:11
Alignment explanation
Indices: 583606--583631 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
583596 CAAAGTCATA
583606 AACACTTATGT
1 AACACTTATGT
583617 AACACTTATGT
1 AACACTTATGT
583628 AACA
1 AACA
583632 TATGATTGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (11 bp):
AACACTTATGT
Found at i:584378 original size:2 final size:2
Alignment explanation
Indices: 584313--584362 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
584303 GCTTTTCATA
584313 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
584355 CT CT CT CT
1 CT CT CT CT
584363 TTCCATGATC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:584533 original size:2 final size:2
Alignment explanation
Indices: 584491--584516 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
584481 TGCAATTACA
584491 CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT
584517 GAGTCTATCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:587602 original size:57 final size:57
Alignment explanation
Indices: 587531--587750 Score: 217
Period size: 57 Copynumber: 3.7 Consensus size: 57
587521 ATATATTGAA
* *
587531 TATAGGTGCGTGTCACAATAACATGTCCGTC-TCCCGCAACATGATATGTAGAATGCG
1 TATAGGTGTGTGTCACAATAACATGTCCGTCTTCCC-CAACATGATATATAGAATGCG
* * * *** * *
587588 TGTAGGTGTGTGTCACAATTACATGTCAGTCTTATATATATATCAATATGATATATAGAATGTG
1 TATAGGTGTGTGTCACAATAACATGTCCGTC-----T-T-CCCCAACATGATATATAGAATGCG
* * *
587652 TATAGGTGTGTATCACAATAACATGTCTGTCTTCCCCAACATGATATATCGAATGCG
1 TATAGGTGTGTGTCACAATAACATGTCCGTCTTCCCCAACATGATATATAGAATGCG
* * *
587709 TATAGGTGTGTGTCACAATAACATATCCGTCTTTCTCAACAT
1 TATAGGTGTGTGTCACAATAACATGTCCGTCTTCCCCAACAT
587751 AGTATGTGTA
Statistics
Matches: 130, Mismatches: 25, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
57 82 0.63
58 1 0.01
59 1 0.01
64 46 0.35
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (57 bp):
TATAGGTGTGTGTCACAATAACATGTCCGTCTTCCCCAACATGATATATAGAATGCG
Found at i:594004 original size:6 final size:6
Alignment explanation
Indices: 593993--594071 Score: 140
Period size: 6 Copynumber: 12.8 Consensus size: 6
593983 ATATGCCTTT
593993 ACCCTA ACCCTA ACCCTA ACCCTA ACCCTA ACCCTA ACCCTA ACCCCTA
1 ACCCTA ACCCTA ACCCTA ACCCTA ACCCTA ACCCTA ACCCTA A-CCCTA
594042 ACCCTA ACCCCTA ACCCTA ACCCTA ACCCT
1 ACCCTA A-CCCTA ACCCTA ACCCTA ACCCT
594072 GTCATTGACA
Statistics
Matches: 71, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
6 59 0.83
7 12 0.17
ACGTcount: A:0.32, C:0.52, G:0.00, T:0.16
Consensus pattern (6 bp):
ACCCTA
Found at i:595953 original size:6 final size:6
Alignment explanation
Indices: 595942--596019 Score: 74
Period size: 6 Copynumber: 13.3 Consensus size: 6
595932 CAACTACTAG
* * *
595942 CCCTAA CCCTAA CCCCCCAA CCCTAA -CCAAA CCCTAA CCC-AA CCCCAA
1 CCCTAA CCCTAA --CCCTAA CCCTAA CCCTAA CCCTAA CCCTAA CCCTAA
*
595990 CCCTAA CCCGAA --CTAA CCCTAA CCCTAA CC
1 CCCTAA CCCTAA CCCTAA CCCTAA CCCTAA CC
596020 ATGCCAATAT
Statistics
Matches: 59, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
4 3 0.05
5 9 0.15
6 42 0.71
8 5 0.08
ACGTcount: A:0.35, C:0.54, G:0.01, T:0.10
Consensus pattern (6 bp):
CCCTAA
Found at i:595976 original size:11 final size:11
Alignment explanation
Indices: 595960--596019 Score: 59
Period size: 11 Copynumber: 5.4 Consensus size: 11
595950 CTAACCCCCC
*
595960 AACCCTAACCA
1 AACCCTAACCT
*
595971 AACCCTAACCC
1 AACCCTAACCT
*
595982 AACCCCAACCCT
1 AACCCTAA-CCT
*
595994 AACCCGAA-CT
1 AACCCTAACCT
596004 AACCCTAACCCT
1 AACCCTAA-CCT
596016 AACC
1 AACC
596020 ATGCCAATAT
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
10 9 0.22
11 17 0.41
12 15 0.37
ACGTcount: A:0.38, C:0.50, G:0.02, T:0.10
Consensus pattern (11 bp):
AACCCTAACCT
Found at i:596013 original size:28 final size:28
Alignment explanation
Indices: 595943--596019 Score: 86
Period size: 28 Copynumber: 2.7 Consensus size: 28
595933 AACTACTAGC
595943 CCTAACCCTAACCCCCCAACCCTAACCAAA
1 CCTAACCCTAA--CCCCAACCCTAACCAAA
*
595973 CCCTAACCC-AACCCCAACCCTAACCCGAA
1 -CCTAACCCTAACCCCAACCCTAA-CCAAA
*
596002 -CTAACCCTAACCCTAACC
1 CCTAACCCTAACCCCAACC
596020 ATGCCAATAT
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
27 7 0.17
28 21 0.50
29 4 0.10
30 2 0.05
31 8 0.19
ACGTcount: A:0.35, C:0.53, G:0.01, T:0.10
Consensus pattern (28 bp):
CCTAACCCTAACCCCAACCCTAACCAAA
Found at i:596014 original size:22 final size:21
Alignment explanation
Indices: 595942--596019 Score: 79
Period size: 22 Copynumber: 3.7 Consensus size: 21
595932 CAACTACTAG
*
595942 CCCTAACCCTAACCC-CCCAA
1 CCCTAACCCTAACCCAACCAA
*
595962 CCCTAA-CCAAACCCTAACCCAA
1 CCCTAACCCTAACCC-AA-CCAA
* *
595984 CCCCAACCCTAACCCGAACTAA
1 CCCTAACCCTAACCC-AACCAA
596006 CCCTAACCCTAACC
1 CCCTAACCCTAACC
596020 ATGCCAATAT
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
19 7 0.15
20 6 0.13
22 25 0.53
23 9 0.19
ACGTcount: A:0.35, C:0.54, G:0.01, T:0.10
Consensus pattern (21 bp):
CCCTAACCCTAACCCAACCAA
Found at i:599457 original size:6 final size:6
Alignment explanation
Indices: 599446--599480 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
599436 AACCCTTGTA
*
599446 AGGGTT AGGGTT AGGGTT AGGGTT AGGGTT TGGGT
1 AGGGTT AGGGTT AGGGTT AGGGTT AGGGTT AGGGT
599481 AACCCCCTAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.14, C:0.00, G:0.51, T:0.34
Consensus pattern (6 bp):
AGGGTT
Found at i:599663 original size:37 final size:37
Alignment explanation
Indices: 599622--599887 Score: 235
Period size: 37 Copynumber: 7.1 Consensus size: 37
599612 TATGCAGGAA
* *
599622 AACCCATACACCTTACACCCTATACCTTAACCCTTAT
1 AACCCATACACCCTACACCCTATACCTTAACCCTTGT
* * * *
599659 AACCCCA-ACACCCTATACCATATACCTTAACCCATAT
1 AA-CCCATACACCCTACACCCTATACCTTAACCCTTGT
599696 AACCCTTATAACCCTTACAACCTACACCCTATACCTTAACCCTTGT
1 AACCC--AT-A--C--AC--CCTACACCCTATACCTTAACCCTTGT
* * * *
599742 AACCCTTACACCCTATACCTTATACCTTAAACCTTGT
1 AACCCATACACCCTACACCCTATACCTTAACCCTTGT
* *
599779 -----A-AC-CCCTACACCTTATACCTTAACCCTTAT
1 AACCCATACACCCTACACCCTATACCTTAACCCTTGT
*
599809 AATCCC-TACACACTACACCCTATACCTTAACCCTTGT
1 AA-CCCATACACCCTACACCCTATACCTTAACCCTTGT
* *
599846 AACCCCTACACCCTATACCCTATACCTTAACCCTTGT
1 AACCCATACACCCTACACCCTATACCTTAACCCTTGT
599883 AACCC
1 AACCC
599888 TTATGCACTA
Statistics
Matches: 188, Mismatches: 21, Indels: 40
0.76 0.08 0.16
Matches are distributed among these distances:
30 24 0.13
31 2 0.01
36 8 0.04
37 113 0.60
38 5 0.03
39 2 0.01
40 1 0.01
41 1 0.01
42 1 0.01
43 1 0.01
44 3 0.02
46 27 0.14
ACGTcount: A:0.31, C:0.40, G:0.02, T:0.27
Consensus pattern (37 bp):
AACCCATACACCCTACACCCTATACCTTAACCCTTGT
Found at i:599702 original size:46 final size:46
Alignment explanation
Indices: 599649--599749 Score: 139
Period size: 46 Copynumber: 2.2 Consensus size: 46
599639 CCCTATACCT
* *
599649 TAACCCTTATAACCCCAACACCCTATACCATATACCTTAACCCATA
1 TAACCCTTATAACCCCAACAACCTACACCATATACCTTAACCCATA
** * * *
599695 TAACCCTTATAACCCTTACAACCTACACCCTATACCTTAACCCTTG
1 TAACCCTTATAACCCCAACAACCTACACCATATACCTTAACCCATA
599741 TAACCCTTA
1 TAACCCTTA
599750 CACCCTATAC
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.34, C:0.39, G:0.01, T:0.27
Consensus pattern (46 bp):
TAACCCTTATAACCCCAACAACCTACACCATATACCTTAACCCATA
Found at i:599733 original size:30 final size:32
Alignment explanation
Indices: 599699--599765 Score: 88
Period size: 30 Copynumber: 2.2 Consensus size: 32
599689 CCCATATAAC
599699 CCTTATAACCCTTACAA-CC-TACACCCTATA
1 CCTTATAACCCTTACAACCCTTACACCCTATA
**
599729 CC-T-TAACCCTTGTAACCCTTACACCCTATA
1 CCTTATAACCCTTACAACCCTTACACCCTATA
599759 CCTTATA
1 CCTTATA
599766 CCTTAAACCT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
28 10 0.32
29 3 0.10
30 15 0.48
31 1 0.03
32 2 0.06
ACGTcount: A:0.30, C:0.39, G:0.01, T:0.30
Consensus pattern (32 bp):
CCTTATAACCCTTACAACCCTTACACCCTATA
Found at i:599775 original size:14 final size:14
Alignment explanation
Indices: 599758--599809 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
599748 TACACCCTAT
599758 ACCTTATACCTTAA
1 ACCTTATACCTTAA
* * *
599772 ACCTTGTAACCCCTAC
1 ACCTTAT-A-CCTTAA
599788 ACCTTATACCTTAA
1 ACCTTATACCTTAA
*
599802 CCCTTATA
1 ACCTTATA
599810 ATCCCTACAC
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
14 17 0.59
15 2 0.07
16 10 0.34
ACGTcount: A:0.31, C:0.35, G:0.02, T:0.33
Consensus pattern (14 bp):
ACCTTATACCTTAA
Found at i:599782 original size:83 final size:83
Alignment explanation
Indices: 599622--599783 Score: 236
Period size: 83 Copynumber: 2.0 Consensus size: 83
599612 TATGCAGGAA
599622 AACCCATACACCTTACACCCTATACCTTAACCCTTATAACCCCAACACCCTATACCATATACCTT
1 AACCCATACACCTTACACCCTATACCTTAACCCTTATAACCCCAACACCCTATACCATATACCTT
*
599687 AACCCATATAACCCTTAT
66 AAACCATATAACCCTTAT
* * ** *
599705 AACCCTTACAACC-TACACCCTATACCTTAACCCTTGTAACCCTTACACCCTATACCTTATACCT
1 AACCCATAC-ACCTTACACCCTATACCTTAACCCTTATAACCCCAACACCCTATACCATATACCT
* *
599769 TAAACCTTGTAACCC
65 TAAACCATATAACCC
599784 CTACACCTTA
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
83 67 0.96
84 3 0.04
ACGTcount: A:0.33, C:0.40, G:0.01, T:0.27
Consensus pattern (83 bp):
AACCCATACACCTTACACCCTATACCTTAACCCTTATAACCCCAACACCCTATACCATATACCTT
AAACCATATAACCCTTAT
Found at i:599786 original size:30 final size:30
Alignment explanation
Indices: 599752--599874 Score: 102
Period size: 30 Copynumber: 3.9 Consensus size: 30
599742 AACCCTTACA
* *
599752 CCCTATACCTTATACCTTAAACCTTGTAAC
1 CCCTACACCTTATACCTTAAACCTTATAAC
*
599782 CCCTACACCTTATACCTTAACCCTTATAATCCC
1 CCCTACACCTTATACCTTAAACCTTATAA---C
* * *
599815 TACACACTACACCCTATACCTTAACCCTTGTAAC
1 --C-C-CTACACCTTATACCTTAAACCTTATAAC
* * *
599849 CCCTACACCCTATACCCTATACCTTA
1 CCCTACACCTTATACCTTAAACCTTA
599875 ACCCTTGTAA
Statistics
Matches: 77, Mismatches: 9, Indels: 14
0.77 0.09 0.14
Matches are distributed among these distances:
30 46 0.60
31 1 0.01
32 1 0.01
33 1 0.01
34 1 0.01
35 1 0.01
36 1 0.01
37 25 0.32
ACGTcount: A:0.29, C:0.40, G:0.02, T:0.29
Consensus pattern (30 bp):
CCCTACACCTTATACCTTAAACCTTATAAC
Found at i:599826 original size:104 final size:104
Alignment explanation
Indices: 599695--599887 Score: 327
Period size: 104 Copynumber: 1.9 Consensus size: 104
599685 TTAACCCATA
*
599695 TAACCCTTATAACCCTTACAACCTACACCCTATACCTTAACCCTTGTAACCCTTACACCCTATAC
1 TAACCCTTATAACCCTTACAACCTACACCCTATACCTTAACCCTTGTAACCCCTACACCCTATAC
*
599760 CTTATACCTTAAACCTTGTAACCCCTACACCTTATACCT
66 CCTATACCTTAAACCTTGTAACCCCTACACCTTATACCT
599799 TAACCCTTATAATCCC-TAC-ACACTACACCCTATACCTTAACCCTTGTAACCCCTACACCCTAT
1 TAACCCTTATAA-CCCTTACAAC-CTACACCCTATACCTTAACCCTTGTAACCCCTACACCCTAT
*
599862 ACCCTATACCTTAACCCTTGTAACCC
64 ACCCTATACCTTAAACCTTGTAACCC
599888 TTATGCACTA
Statistics
Matches: 84, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
103 2 0.02
104 79 0.94
105 3 0.04
ACGTcount: A:0.30, C:0.40, G:0.02, T:0.28
Consensus pattern (104 bp):
TAACCCTTATAACCCTTACAACCTACACCCTATACCTTAACCCTTGTAACCCCTACACCCTATAC
CCTATACCTTAAACCTTGTAACCCCTACACCTTATACCT
Found at i:599874 original size:67 final size:67
Alignment explanation
Indices: 599716--599864 Score: 228
Period size: 67 Copynumber: 2.2 Consensus size: 67
599706 ACCCTTACAA
* * * *
599716 CCTACACCCTATACCTTAACCCTTGTAACCCTTACACCCTATACCTTATACCTTAAACCTTGTAA
1 CCTACACCCTATACCTTAACCCTTATAACCCTTACACACTACACCCTATACCTTAAACCTTGTAA
599781 CC
66 CC
* *
599783 CCTACACCTTATACCTTAACCCTTATAATCCC-TACACACTACACCCTATACCTTAACCCTTGTA
1 CCTACACCCTATACCTTAACCCTTATAA-CCCTTACACACTACACCCTATACCTTAAACCTTGTA
599847 ACC
65 ACC
599850 CCTACACCCTATACC
1 CCTACACCCTATACC
599865 CTATACCTTA
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
67 71 0.96
68 3 0.04
ACGTcount: A:0.29, C:0.41, G:0.02, T:0.28
Consensus pattern (67 bp):
CCTACACCCTATACCTTAACCCTTATAACCCTTACACACTACACCCTATACCTTAAACCTTGTAA
CC
Found at i:611982 original size:436 final size:435
Alignment explanation
Indices: 611077--612057 Score: 1276
Period size: 436 Copynumber: 2.2 Consensus size: 435
611067 CTTTCCTTTC
* * *
611077 ATATCAAGAAAAAGGGGCTGGTCCCTCAAATTAGGGGCCAAGATGGCTCTAAAGTCTTTTTACAA
1 ATATCAAGAAAAAGGGGCTGGCCCCTCAAATTAGGGGCCAAAAGGGCTCT-AAGTCTTTTTACAA
*
611142 TAACTGTTTACTGAACAATAATTTGTTATTAATTATATAAGCAAAAATGTTCATTGTACAGCTGT
65 TAACTCTTTACTGAACAATAATTTGTTATTAATTATA-AAGCAAAAATGTTCATTGTACAGCTGT
* * * **
611207 TTATCTATACAGTATCATAATTAAGTCATATGTTACGTAATTAGGGGTTTCAAGGGGCCAGATTT
129 TCAACTATACAGTATCATAACTAAGTCATATGTTACGTAATTAGGGGTTTCAAGGGGCCAGATAC
* * * * *
611272 TCATAACTTTGATCAATAATATCTGAACAAGGAGAAATATTTTTAAAGGCAATGTAGAACAAAAG
194 TCAAAACTATGATCAATAATATCTGAAAAAGGAGAAATATTTCTAAAAGCAATGTAGAACAAAAG
** * ** ** * *
611337 TTGCTTAAAATGGTGTTCTTGTCAATATGCTACCTTAAATGTTTTTGTTTATGACCCCATTTAGG
259 TTGCTTAAAATAATGTTCTTGACAATATGAAACCAAAAATGTTTTTGTTTATGACCCCAGTAAGG
*
611402 AGTTAAAGGGTCGGCCCCTAAAACACATTCGTACAGATATCTCAAGAACGGTTAACATTTCATGA
324 AGTTAAAGGGTCGGCCCCTAAAACACATTCGTACAGATATCTCAAGAACGGTTAACAATTCATGA
* ** * *
611467 ACACTTGTTGAACAAAATATATTTAAATTTGCAAGACCTTAAATTTG
389 ACACTTGTAGAACAAAATATATTTAAATTAACAAGACATTAAATTGG
*
611514 ATATCAAGAAAAAGGGGCTGGCCTCTCAAATTAGGGGCCAAAAGGGCTCTAATGTCTTTTTACAA
1 ATATCAAGAAAAAGGGGCTGGCCCCTCAAATTAGGGGCCAAAAGGGCTCTAA-GTCTTTTTACAA
* *
611579 TAACTCTTTCCTGAACAATATTTTGTTATTAATTATAGAAGCAAAAATGTTCATTGTACAGCTGT
65 TAACTCTTTACTGAACAATAATTTGTTATTAATTATA-AAGCAAAAATGTTCATTGTACAGCTGT
*
611644 TCAACTATACAGTA-CTATACCTAAGTCATATGTTACGTAATTAGGGGTTTCAAGGGGCCAGA-A
129 TCAACTATACAGTATC-ATAACTAAGTCATATGTTACGTAATTAGGGGTTTCAAGGGGCCAGATA
*
611707 CTCAAAACTATGATCATTAATATCTGAAAAAGGAGAAATA-TTCTAAACAGCAATGTAGAACAAA
193 CTCAAAACTATGATCAATAATATCTGAAAAAGGAGAAATATTTCTAAA-AGCAATGTAGAACAAA
* * *
611771 AGTTG-TTCAAAATAATGTTC-TGAACAATATTAAACCAAAAAT-TTTGTTG-TTAGTGGCCCCG
257 AGTTGCTT-AAAATAATGTTCTTG-ACAATATGAAACCAAAAATGTTT-TTGTTTA-TGACCCCA
* * * * **
611832 GTAAGGGGTTAAAGGGTCGGCCCTTAAAACACATTTGTACATATATCTCGCGAACGGTTAACAAT
318 GTAAGGAGTTAAAGGGTCGGCCCCTAAAACACATTCGTACAGATATCTCAAGAACGGTTAACAAT
* * * **
611897 TCATGAACACTTGTAGAACAAAATATGTTTATATTAACGAGACATTTTATTGG
383 TCATGAACACTTGTAGAACAAAATATATTTAAATTAACAAGACATTAAATTGG
* ** * **
611950 ATATCAAGAAAAAGGGGCTGGCCCCACAAATTAGGGGGTACAAGGGCTACTAAGTCTTTTTATGA
1 ATATCAAGAAAAAGGGGCTGGCCCCTCAAATTAGGGGCCAAAAGGGCT-CTAAGTCTTTTTACAA
* * * *
612015 TAACTTTTTTCT-AACCAATAATTTGATATTTATTATAAAGCAA
65 TAACTCTTTACTGAA-CAATAATTTGTTATTAATTATAAAGCAA
612058 CAAAGCAGCT
Statistics
Matches: 474, Mismatches: 61, Indels: 20
0.85 0.11 0.04
Matches are distributed among these distances:
435 24 0.05
436 271 0.57
437 179 0.38
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (435 bp):
ATATCAAGAAAAAGGGGCTGGCCCCTCAAATTAGGGGCCAAAAGGGCTCTAAGTCTTTTTACAAT
AACTCTTTACTGAACAATAATTTGTTATTAATTATAAAGCAAAAATGTTCATTGTACAGCTGTTC
AACTATACAGTATCATAACTAAGTCATATGTTACGTAATTAGGGGTTTCAAGGGGCCAGATACTC
AAAACTATGATCAATAATATCTGAAAAAGGAGAAATATTTCTAAAAGCAATGTAGAACAAAAGTT
GCTTAAAATAATGTTCTTGACAATATGAAACCAAAAATGTTTTTGTTTATGACCCCAGTAAGGAG
TTAAAGGGTCGGCCCCTAAAACACATTCGTACAGATATCTCAAGAACGGTTAACAATTCATGAAC
ACTTGTAGAACAAAATATATTTAAATTAACAAGACATTAAATTGG
Found at i:620156 original size:19 final size:19
Alignment explanation
Indices: 620132--620185 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
620122 CACTTTAAAT
*
620132 TTATATCCCATTTGGGTTA
1 TTATATCCCATTTGGGCTA
****
620151 TTATATCCCAAACCGGCTA
1 TTATATCCCATTTGGGCTA
620170 TTATATCCCATTTGGG
1 TTATATCCCATTTGGG
620186 AAATTGGTCC
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (19 bp):
TTATATCCCATTTGGGCTA
Found at i:623112 original size:45 final size:45
Alignment explanation
Indices: 623048--623274 Score: 375
Period size: 45 Copynumber: 5.0 Consensus size: 45
623038 GGCCATGAAG
623048 AACAGTTCCAAGTCAACTACCTGTGTAAGCCCCACTTCTTATTGT
1 AACAGTTCCAAGTCAACTACCTGTGTAAGCCCCACTTCTTATTGT
*
623093 AACAGTTCCATGTCAACTACCTGTGTAAGCCCCACTTCTTATTGT
1 AACAGTTCCAAGTCAACTACCTGTGTAAGCCCCACTTCTTATTGT
623138 AACAGTTCCAAGTCAACTACCTGTGTAAGCCCCACTTCTTATTGT
1 AACAGTTCCAAGTCAACTACCTGTGTAAGCCCCACTTCTTATTGT
* * * *
623183 AACAGTTCCAGGTCAACTATCTATTTAAGCCCCACTTCTTATTGT
1 AACAGTTCCAAGTCAACTACCTGTGTAAGCCCCACTTCTTATTGT
* *
623228 AACAGTTCCACA-TCAACTACCTGTGTAAGCCCCTCTTTTTATTGT
1 AACAGTTCCA-AGTCAACTACCTGTGTAAGCCCCACTTCTTATTGT
623273 AA
1 AA
623275 GACACAGAGA
Statistics
Matches: 169, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 169 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.33
Consensus pattern (45 bp):
AACAGTTCCAAGTCAACTACCTGTGTAAGCCCCACTTCTTATTGT
Found at i:631602 original size:4 final size:4
Alignment explanation
Indices: 631593--631630 Score: 51
Period size: 4 Copynumber: 9.8 Consensus size: 4
631583 AAAGTTTACA
* *
631593 GACG GACG GACA GACA GACG GACG GACG GAC- GACG GAC
1 GACG GACG GACG GACG GACG GACG GACG GACG GACG GAC
631631 AACAGGTGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
3 3 0.10
4 28 0.90
ACGTcount: A:0.32, C:0.26, G:0.42, T:0.00
Consensus pattern (4 bp):
GACG
Found at i:631611 original size:16 final size:16
Alignment explanation
Indices: 631590--631630 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
631580 TGAAAAGTTT
631590 ACAGACGGACGGACAG
1 ACAGACGGACGGACAG
*
631606 ACAGACGGACGGACGG
1 ACAGACGGACGGACAG
631622 AC-GACGGAC
1 ACAGACGGAC
631631 AACAGGTGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 7 0.29
16 17 0.71
ACGTcount: A:0.34, C:0.27, G:0.39, T:0.00
Consensus pattern (16 bp):
ACAGACGGACGGACAG
Found at i:635780 original size:2 final size:2
Alignment explanation
Indices: 635773--635815 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
635763 ACCAACTAAA
635773 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
635815 A
1 A
635816 TTTGAATAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:639635 original size:47 final size:47
Alignment explanation
Indices: 639599--640004 Score: 614
Period size: 47 Copynumber: 8.6 Consensus size: 47
639589 AGTGTTACGA
* *
639599 GTACAAGTACCTGTTTGATGATGTCACTGGCCAACTGACCGTTACTG
1 GTACAAGTACCTGTTTGATGATGTCACTGCCCGACTGACCGTTACTG
* *
639646 GTACAAGTACCTGTTTGATGATGTCACAGCCCGACTGAGCGTTACTG
1 GTACAAGTACCTGTTTGATGATGTCACTGCCCGACTGACCGTTACTG
* * *
639693 ATACAAGTACCTGTTTGATGATGTCACAGCCCGACTGAGCGTTACTG
1 GTACAAGTACCTGTTTGATGATGTCACTGCCCGACTGACCGTTACTG
* * *
639740 GTACAAATACTTGTTTGATGATGTCACTGCCCGACTGACTGTTACTG
1 GTACAAGTACCTGTTTGATGATGTCACTGCCCGACTGACCGTTACTG
639787 GTACAAGTACCTGTTTGATGATGTCACTGCCCGACTGACCGTTACTG
1 GTACAAGTACCTGTTTGATGATGTCACTGCCCGACTGACCGTTACTG
* *
639834 GTACAAGTACCTGTTTAATGATGTCACTGCCCAACTGACCGTTACTG
1 GTACAAGTACCTGTTTGATGATGTCACTGCCCGACTGACCGTTACTG
* * *
639881 ATACAAGTACCTGTTTGATGATGTCACAGCCCGACTGAGCGTTACTG
1 GTACAAGTACCTGTTTGATGATGTCACTGCCCGACTGACCGTTACTG
* * ** *
639928 GTACAAATACTTGTTTGATGATGTCACTGCCTAACTAACCGTTACTG
1 GTACAAGTACCTGTTTGATGATGTCACTGCCCGACTGACCGTTACTG
*
639975 GTACAAGTACCTGTTTGATGACTGTTACTG
1 GTACAAGTACCTGTTTGATGA-TGTCACTG
640005 GTACAAGTAC
Statistics
Matches: 326, Mismatches: 32, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
47 319 0.98
48 7 0.02
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.31
Consensus pattern (47 bp):
GTACAAGTACCTGTTTGATGATGTCACTGCCCGACTGACCGTTACTG
Found at i:640004 original size:30 final size:30
Alignment explanation
Indices: 639968--640157 Score: 133
Period size: 30 Copynumber: 6.2 Consensus size: 30
639958 CTAACTAACC
639968 GTTACTGGTACAAGTACCTGTTTGATGACT
1 GTTACTGGTACAAGTACCTGTTTGATGACT
639998 GTTACTGGTACAAGTACCTGTTTGATGA-T
1 GTTACTGGTACAAGTACCTGTTTGATGACT
* ** * *
640027 GTCACT-GCCCAACTGACC-GTTACTGAT-ACAA
1 GTTACTGGTACAAGT-ACCTGTT--TGATGAC-T
* * * ***
640058 G-TACCTGTTTGATGATGT-CACTGCCCGACTGACT
1 GTTA-CTG-GT-A-CAAGTAC-CTGTTTGA-TGACT
640092 GTTACTGGTACAAGTACCTGTTTGATGACT
1 GTTACTGGTACAAGTACCTGTTTGATGACT
640122 GTTACTGGTACAAGTACCTGTTTGATGA-T
1 GTTACTGGTACAAGTACCTGTTTGATGACT
*
640151 GTCACTG
1 GTTACTG
640158 CCTAACTAAC
Statistics
Matches: 121, Mismatches: 23, Indels: 33
0.68 0.13 0.19
Matches are distributed among these distances:
28 8 0.07
29 17 0.14
30 66 0.55
31 11 0.09
32 2 0.02
33 4 0.03
34 6 0.05
35 7 0.06
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.34
Consensus pattern (30 bp):
GTTACTGGTACAAGTACCTGTTTGATGACT
Found at i:640048 original size:77 final size:76
Alignment explanation
Indices: 639921--640080 Score: 257
Period size: 77 Copynumber: 2.1 Consensus size: 76
639911 CCGACTGAGC
* * *
639921 GTTACTGGTACAAATACTTGTTTGATGATGTCACTGCCTAACTAACCGTTACTGGTACAAGTACC
1 GTTACTGGTACAAATACCTGTTTGATGATGTCACTGCCCAACTAACCGTTACTGATACAAGTACC
639986 TGTTTGATGACT
66 TGTTTGATGA-T
* *
639998 GTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAACTGACCGTTACTGATACAAGTACC
1 GTTACTGGTACAAATACCTGTTTGATGATGTCACTGCCCAACTAACCGTTACTGATACAAGTACC
640063 TGTTTGATGAT
66 TGTTTGATGAT
*
640074 GTCACTG
1 GTTACTG
640081 CCCGACTGAC
Statistics
Matches: 77, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
76 7 0.09
77 70 0.91
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (76 bp):
GTTACTGGTACAAATACCTGTTTGATGATGTCACTGCCCAACTAACCGTTACTGATACAAGTACC
TGTTTGATGAT
Found at i:640067 original size:47 final size:47
Alignment explanation
Indices: 639993--640128 Score: 227
Period size: 47 Copynumber: 2.9 Consensus size: 47
639983 ACCTGTTTGA
639993 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAAC
1 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAAC
* * *
640040 TGACCGTTACTGATACAAGTACCTGTTTGATGATGTCACTGCCCGAC
1 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAAC
*
640087 TGACTGTTACTGGTACAAGTACCTGTTTGATGACTGTTACTG
1 TGACTGTTACTGGTACAAGTACCTGTTTGATGA-TGTCACTG
640129 GTACAAGTAC
Statistics
Matches: 82, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
47 75 0.91
48 7 0.09
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.33
Consensus pattern (47 bp):
TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAAC
Found at i:640126 original size:77 final size:77
Alignment explanation
Indices: 640040--640358 Score: 523
Period size: 77 Copynumber: 4.2 Consensus size: 77
640030 ACTGCCCAAC
* * * * *
640040 TGACCGTTACTGATACAAGTACCTGTTTGATGATGTCACTGCCCGACTGACTGTTACTGGTACAA
1 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAACTAACCGTTACTGGTACAA
640105 GTACCTGTTTGA
66 GTACCTGTTTGA
*
640117 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCTAACTAACCGTTACTGGTACAA
1 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAACTAACCGTTACTGGTACAA
640182 GTACCTGTTTGA
66 GTACCTGTTTGA
* * *
640194 TGACTGTTACTGGTACAAATACTTGTTTGATGATGTCACTGCCTAACTAACCGTTACTGGTACAA
1 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAACTAACCGTTACTGGTACAA
640259 GTACCTGTTTGA
66 GTACCTGTTTGA
* *
640271 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAACTGACCGTTACTGATACAA
1 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAACTAACCGTTACTGGTACAA
640336 GTACCTGTTTGA
66 GTACCTGTTTGA
*
640348 TGA-TGTCACTG
1 TGACTGTTACTG
640359 CCCGACTGAC
Statistics
Matches: 228, Mismatches: 14, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
76 7 0.03
77 221 0.97
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (77 bp):
TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAACTAACCGTTACTGGTACAA
GTACCTGTTTGA
Found at i:640205 original size:30 final size:29
Alignment explanation
Indices: 640169--640234 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 29
640159 CTAACTAACC
*
640169 GTTACTGGTACAAGTACCTGTTTGATGACT
1 GTTACTGGTACAAATACCTGTTTGATGA-T
*
640199 GTTACTGGTACAAATACTTGTTTGATGAT
1 GTTACTGGTACAAATACCTGTTTGATGAT
*
640228 GTCACTG
1 GTTACTG
640235 CCTAACTAAC
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
29 7 0.21
30 26 0.79
ACGTcount: A:0.24, C:0.15, G:0.23, T:0.38
Consensus pattern (29 bp):
GTTACTGGTACAAATACCTGTTTGATGAT
Found at i:640250 original size:124 final size:124
Alignment explanation
Indices: 639822--640944 Score: 641
Period size: 124 Copynumber: 9.0 Consensus size: 124
639812 ACTGCCCGAC
* ** * *
639822 TGACCGTTACTGGTACAAGTACCTGTTTAATGATGTCACTGCCCAACTGACCGTTACTGATACAA
1 TGACCGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCTGACTGACTGTTACTGGTACAA
* ** * * * * *
639887 GTACCTGTTTGATGATGTCACAGCCCGACTGAGCGTTACTGGTACAAATACTTGTTTGA
66 GTACCTGTTTGATGATGTCACTGCCTAACTAACCGTTACTGATACAAGTACCTGTTTGA
* * * * * * * **
639946 TGA-TGTCACT-G-CCTAACTAACC-GTTACTGGTACAAGT-ACCTGTTTGA-TGACTGTTACTG
1 TGACCGTTACTGGTAC-AAGT-ACCTGTT--TGAT-GATGTCA-CTGCCTGACTGACTGTTACTG
* *
640005 GTACAAGTACCTGTTTGATGATGTCACTGCCCAACTGACCGTTACTGATACAAGTACCTGTTTGA
60 GTACAAGTACCTGTTTGATGATGTCACTGCCTAACTAACCGTTACTGATACAAGTACCTGTTTGA
* * ** * * * * * **
640070 TGA-TGTCACT-GCCCGACTGA-CTGTTACTGGTACAAGT-ACCTGTTTGA-TGACTGTTACTGG
1 TGACCGTTACTGGTACAAGT-ACCTGTT--TGAT-GATGTCA-CTGCCTGACTGACTGTTACTGG
*
640130 TACAAGTACCTGTTTGATGATGTCACTGCCTAACTAACCGTTACTGGTACAAGTACCTGTTTGA
61 TACAAGTACCTGTTTGATGATGTCACTGCCTAACTAACCGTTACTGATACAAGTACCTGTTTGA
* * * * * *
640194 TGACTGTTACTGGTACAAATACTTGTTTGATGATGTCACTGCCTAACTAACCGTTACTGGTACAA
1 TGACCGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCTGACTGACTGTTACTGGTACAA
* * * * * ****
640259 GTACCTGTTTGATGACTGTTACTG-GT-ACAAGTACCTGTT--TGAT-GATGT-CACTGCCCAA
66 GTACCTGTTTGATGA-TGTCACTGCCTAACTA--ACC-GTTACTGATACAAGTAC-CTGTTTGA
* *
640317 CTGACCGTTACTGATACAAGTACCTGTTTGATGATGTCACTGCCCGACTGACTGTTACTGGTACA
1 -TGACCGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCTGACTGACTGTTACTGGTACA
* * * * * ** *
640382 AGTACCTGTTTGATGACTGTTACTG-GT-ACAAATACCTGTT--TGAT-GATGT-CACTGCCTAA
65 AGTACCTGTTTGATGA-TGTCACTGCCTAAC-TA-ACC-GTTACTGATACAAGTAC-CTGTTTGA
* * * * *
640441 CTAACCGTTACTGGTACAAGTACCTGTTTGATGACTGTTACTG-GT-ACAAGTACCTGTT--TGA
1 -TGACCGTTACTGGTACAAGTACCTGTTTGATGA-TGTCACTGCCTGAC-TG-A-CTGTTACTGG
* * *** * * * * *
640502 T-GATGT-CACTGCCCGACTGACTGTTACTG--GAACAAGTACCTGTT--TGAT-GATGT-CACT
61 TACAAGTAC-CTGTTTGA-TGA-TGTCACTGCCTAACTA--ACC-GTTACTGATACAAGTAC-CT
****
640559 GGCCAA
119 GTTTGA
* **
640565 CTGACCGTTACTGGTACAAGTACCTGTTTGATGATATCACTGCCCAACTGACTGTTACTGGTACA
1 -TGACCGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCTGACTGACTGTTACTGGTACA
* * * * * * * ****
640630 AGTACCTGTTTAATGATGTCACTG-ATCGACTGACTGTTACTGTTA-AATGATGTCACTGCCCAA
65 AGTACCTGTTTGATGATGTCACTGCCT-AACTAACCGTTACTGATACAA-G-T-AC-CTGTTTGA
* * * *
640693 CTGACCGTTACTGATACAAGAACCTGTTTGATGATGTCACTG-ATCGACTGACCGTTACTGGTAC
1 -TGACCGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCT-GACTGACTGTTACTGGTAC
* *
640757 AAATACCTGTTTGATGATGTCACTGCCTAACTAACCGTTACTGGTACAAGTACCTGTTTGA
64 AAGTACCTGTTTGATGATGTCACTGCCTAACTAACCGTTACTGATACAAGTACCTGTTTGA
* * *
640818 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCGACTGACTGTTACTGGAACAA
1 TGACCGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCTGACTGACTGTTACTGGTACAA
* *
640883 GTACCTGTTTGATGATGTCACTGGCC-AACTGACCGTTACTGGTACAAGTACCTGTTTGA
66 GTACCTGTTTGATGATGTCACT-GCCTAACTAACCGTTACTGATACAAGTACCTGTTTGA
640942 TGA
1 TGA
640945 TATCACTGCC
Statistics
Matches: 828, Mismatches: 123, Indels: 96
0.79 0.12 0.09
Matches are distributed among these distances:
121 1 0.00
122 17 0.02
123 55 0.07
124 574 0.69
125 55 0.07
126 19 0.02
127 1 0.00
128 103 0.12
129 3 0.00
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (124 bp):
TGACCGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCTGACTGACTGTTACTGGTACAA
GTACCTGTTTGATGATGTCACTGCCTAACTAACCGTTACTGATACAAGTACCTGTTTGA
Found at i:640282 original size:30 final size:30
Alignment explanation
Indices: 640246--640435 Score: 124
Period size: 30 Copynumber: 6.2 Consensus size: 30
640236 CTAACTAACC
640246 GTTACTGGTACAAGTACCTGTTTGATGACT
1 GTTACTGGTACAAGTACCTGTTTGATGACT
640276 GTTACTGGTACAAGTACCTGTTTGATGA-T
1 GTTACTGGTACAAGTACCTGTTTGATGACT
* ** * *
640305 GTCACT-GCCCAACTGACC-GTTACTGAT-ACAA
1 GTTACTGGTACAAGT-ACCTGTT--TGATGAC-T
* * * ***
640336 G-TACCTGTTTGATGATGT-CACTGCCCGACTGACT
1 GTTA-CTG-GT-A-CAAGTAC-CTGTTTGA-TGACT
640370 GTTACTGGTACAAGTACCTGTTTGATGACT
1 GTTACTGGTACAAGTACCTGTTTGATGACT
*
640400 GTTACTGGTACAAATACCTGTTTGATGA-T
1 GTTACTGGTACAAGTACCTGTTTGATGACT
*
640429 GTCACTG
1 GTTACTG
640436 CCTAACTAAC
Statistics
Matches: 120, Mismatches: 24, Indels: 33
0.68 0.14 0.19
Matches are distributed among these distances:
28 8 0.07
29 17 0.14
30 65 0.54
31 11 0.09
32 2 0.02
33 4 0.03
34 6 0.05
35 7 0.06
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.34
Consensus pattern (30 bp):
GTTACTGGTACAAGTACCTGTTTGATGACT
Found at i:640345 original size:47 final size:47
Alignment explanation
Indices: 640271--641017 Score: 403
Period size: 47 Copynumber: 15.3 Consensus size: 47
640261 ACCTGTTTGA
640271 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAAC
1 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAAC
* * *
640318 TGACCGTTACTGATACAAGTACCTGTTTGATGATGTCACTGCCCGAC
1 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAAC
* ** *
640365 TGACTGTTACTGGTACAAGTACCTGTTTGATGACTGTTACTGGTACAAA
1 TGACTGTTACTGGTACAAGTACCTGTTTGATGA-TGTCACT-GCCCAAC
* * * * ****
640414 T-ACCTGTTTGA-TGATGTCACTGCCTAACTAACC-GTTACTGGTACAAGT-ACCTGTTTGA-
1 TGA-CTG-TT-ACTG--GT-A----C-AAGT-ACCTGTT--TGAT-GATGTCA-CTGCCCAAC
*
640472 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCGAC
1 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAAC
* *
640519 TGACTGTTACTGGAACAAGTACCTGTTTGATGATGTCACTGGCCAAC
1 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAAC
* *
640566 TGACCGTTACTGGTACAAGTACCTGTTTGATGATATCACTGCCCAAC
1 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAAC
* ** *
640613 TGACTGTTACTGGTACAAGTACCTGTTTAATGATGTCACTGATCGAC
1 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAAC
* * **** * * **
640660 TGACTGTTACTGTTA-AATGATGTCACTGCCCAACTGACCGTTACTGATACAA-
1 TGACTGTTACTGGTACAA-G-T-AC-CTGTTTGA-TGA-TGTCACTG-CCCAAC
* * * * * * * ** *
640712 -GAACCTGTT--TGAT-GATGT-CACTGATCGACTGACCGTTACTGGTACAAA
1 TG-A-CTGTTACTGGTACAAGTAC-CTGTTTGA-TGA-TGTCACT-GCCCAAC
* * * * ****
640760 T-ACCTGTTTGA-TGATGTCACTGCCTAACTAACC-GTTACTGGTACAAGT-ACCTGTTTGA-
1 TGA-CTG-TT-ACTG--GT-A----C-AAGT-ACCTGTT--TGAT-GATGTCA-CTGCCCAAC
*
640818 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCGAC
1 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAAC
* *
640865 TGACTGTTACTGGAACAAGTACCTGTTTGATGATGTCACTGGCCAAC
1 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAAC
* *
640912 TGACCGTTACTGGTACAAGTACCTGTTTGATGATATCACTGCCCAAC
1 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAAC
* ** *
640959 TGACTGTTACTGGTACAAGTACCTGTTTAATGATGTCACTGATCGAC
1 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAAC
641006 TGACTGTTACTG
1 TGACTGTTACTG
641018 TTAAATGATG
Statistics
Matches: 557, Mismatches: 84, Indels: 118
0.73 0.11 0.16
Matches are distributed among these distances:
46 18 0.03
47 395 0.71
48 17 0.03
49 21 0.04
50 14 0.03
51 9 0.02
52 10 0.02
53 8 0.01
54 2 0.00
55 4 0.01
56 2 0.00
57 9 0.02
58 14 0.03
59 17 0.03
60 13 0.02
61 4 0.01
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (47 bp):
TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAAC
Found at i:640404 original size:77 final size:77
Alignment explanation
Indices: 640318--640560 Score: 398
Period size: 77 Copynumber: 3.2 Consensus size: 77
640308 ACTGCCCAAC
* *
640318 TGACCGTTACTGATACAAGTACCTGTTTGATGATGTCACTGCCCGACTGACTGTTACTGGTACAA
1 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCGACTGACTGTTACTGGTACAA
640383 GTACCTGTTTGA
66 GTACCTGTTTGA
* ** * *
640395 TGACTGTTACTGGTACAAATACCTGTTTGATGATGTCACTGCCTAACTAACCGTTACTGGTACAA
1 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCGACTGACTGTTACTGGTACAA
640460 GTACCTGTTTGA
66 GTACCTGTTTGA
*
640472 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCGACTGACTGTTACTGGAACAA
1 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCGACTGACTGTTACTGGTACAA
640537 GTACCTGTTTGA
66 GTACCTGTTTGA
*
640549 TGA-TGTCACTGG
1 TGACTGTTACTGG
640561 CCAACTGACC
Statistics
Matches: 152, Mismatches: 14, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
76 8 0.05
77 144 0.95
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (77 bp):
TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCGACTGACTGTTACTGGTACAA
GTACCTGTTTGA
Found at i:640483 original size:30 final size:29
Alignment explanation
Indices: 640447--640512 Score: 114
Period size: 30 Copynumber: 2.2 Consensus size: 29
640437 CTAACTAACC
640447 GTTACTGGTACAAGTACCTGTTTGATGACT
1 GTTACTGGTACAAGTACCTGTTTGATGA-T
640477 GTTACTGGTACAAGTACCTGTTTGATGAT
1 GTTACTGGTACAAGTACCTGTTTGATGAT
*
640506 GTCACTG
1 GTTACTG
640513 CCCGACTGAC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
29 7 0.20
30 28 0.80
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.36
Consensus pattern (29 bp):
GTTACTGGTACAAGTACCTGTTTGATGAT
Found at i:640679 original size:34 final size:34
Alignment explanation
Indices: 640635--640705 Score: 97
Period size: 34 Copynumber: 2.1 Consensus size: 34
640625 GTACAAGTAC
* * * *
640635 CTGTTTAATGATGTCACTGATCGACTGACTGTTA
1 CTGTTAAATGATGTCACTGACCAACTGACCGTTA
*
640669 CTGTTAAATGATGTCACTGCCCAACTGACCGTTA
1 CTGTTAAATGATGTCACTGACCAACTGACCGTTA
640703 CTG
1 CTG
640706 ATACAAGAAC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.34
Consensus pattern (34 bp):
CTGTTAAATGATGTCACTGACCAACTGACCGTTA
Found at i:640690 original size:81 final size:81
Alignment explanation
Indices: 640595--640752 Score: 262
Period size: 81 Copynumber: 2.0 Consensus size: 81
640585 TACCTGTTTG
* * *
640595 ATGATATCACTGCCCAACTGACTGTTACTGGTACAAGTACCTGTTTAATGATGTCACTGATCGAC
1 ATGATATCACTGCCCAACTGACCGTTACTGATACAAGAACCTGTTTAATGATGTCACTGATCGAC
*
640660 TGACTGTTACTGTTAA
66 TGACCGTTACTGTTAA
* *
640676 ATGATGTCACTGCCCAACTGACCGTTACTGATACAAGAACCTGTTTGATGATGTCACTGATCGAC
1 ATGATATCACTGCCCAACTGACCGTTACTGATACAAGAACCTGTTTAATGATGTCACTGATCGAC
640741 TGACCGTTACTG
66 TGACCGTTACTG
640753 GTACAAATAC
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 71 1.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31
Consensus pattern (81 bp):
ATGATATCACTGCCCAACTGACCGTTACTGATACAAGAACCTGTTTAATGATGTCACTGATCGAC
TGACCGTTACTGTTAA
Found at i:640829 original size:30 final size:29
Alignment explanation
Indices: 640793--640858 Score: 114
Period size: 30 Copynumber: 2.2 Consensus size: 29
640783 CTAACTAACC
640793 GTTACTGGTACAAGTACCTGTTTGATGACT
1 GTTACTGGTACAAGTACCTGTTTGATGA-T
640823 GTTACTGGTACAAGTACCTGTTTGATGAT
1 GTTACTGGTACAAGTACCTGTTTGATGAT
*
640852 GTCACTG
1 GTTACTG
640859 CCCGACTGAC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
29 7 0.20
30 28 0.80
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.36
Consensus pattern (29 bp):
GTTACTGGTACAAGTACCTGTTTGATGAT
Found at i:640840 original size:346 final size:346
Alignment explanation
Indices: 640395--641253 Score: 1709
Period size: 346 Copynumber: 2.5 Consensus size: 346
640385 ACCTGTTTGA
640395 TGACTGTTACTGGTACAAATACCTGTTTGATGATGTCACTGCCTAACTAACCGTTACTGGTACAA
1 TGACTGTTACTGGTACAAATACCTGTTTGATGATGTCACTGCCTAACTAACCGTTACTGGTACAA
640460 GTACCTGTTTGATGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCGACTGACTG
66 GTACCTGTTTGATGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCGACTGACTG
640525 TTACTGGAACAAGTACCTGTTTGATGATGTCACTGGCCAACTGACCGTTACTGGTACAAGTACCT
131 TTACTGGAACAAGTACCTGTTTGATGATGTCACTGGCCAACTGACCGTTACTGGTACAAGTACCT
640590 GTTTGATGATATCACTGCCCAACTGACTGTTACTGGTACAAGTACCTGTTTAATGATGTCACTGA
196 GTTTGATGATATCACTGCCCAACTGACTGTTACTGGTACAAGTACCTGTTTAATGATGTCACTGA
640655 TCGACTGACTGTTACTGTTAAATGATGTCACTGCCCAACTGACCGTTACTGATACAAGAACCTGT
261 TCGACTGACTGTTACTGTTAAATGATGTCACTGCCCAACTGACCGTTACTGATACAAGAACCTGT
640720 TTGATGATGTCACTGATCGAC
326 TTGATGATGTCACTGATCGAC
*
640741 TGACCGTTACTGGTACAAATACCTGTTTGATGATGTCACTGCCTAACTAACCGTTACTGGTACAA
1 TGACTGTTACTGGTACAAATACCTGTTTGATGATGTCACTGCCTAACTAACCGTTACTGGTACAA
640806 GTACCTGTTTGATGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCGACTGACTG
66 GTACCTGTTTGATGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCGACTGACTG
640871 TTACTGGAACAAGTACCTGTTTGATGATGTCACTGGCCAACTGACCGTTACTGGTACAAGTACCT
131 TTACTGGAACAAGTACCTGTTTGATGATGTCACTGGCCAACTGACCGTTACTGGTACAAGTACCT
640936 GTTTGATGATATCACTGCCCAACTGACTGTTACTGGTACAAGTACCTGTTTAATGATGTCACTGA
196 GTTTGATGATATCACTGCCCAACTGACTGTTACTGGTACAAGTACCTGTTTAATGATGTCACTGA
641001 TCGACTGACTGTTACTGTTAAATGATGTCACTGCCCAACTGACCGTTACTGATACAAGAACCTGT
261 TCGACTGACTGTTACTGTTAAATGATGTCACTGCCCAACTGACCGTTACTGATACAAGAACCTGT
641066 TTGATGATGTCACTGATCGAC
326 TTGATGATGTCACTGATCGAC
641087 TGACTGTTACTGGTACAAATACCTGTTTGATGATGTCACTGCCTAACTAACCGTTACTGGTACAA
1 TGACTGTTACTGGTACAAATACCTGTTTGATGATGTCACTGCCTAACTAACCGTTACTGGTACAA
641152 GTACCTGTTTGATGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCGACTGACTG
66 GTACCTGTTTGATGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCGACTGACTG
641217 TTACTGGAACAAGTACCTGTTTGATGATGTCACTGGC
131 TTACTGGAACAAGTACCTGTTTGATGATGTCACTGGC
641254 TTGTTGTTCC
Statistics
Matches: 511, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
346 511 1.00
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (346 bp):
TGACTGTTACTGGTACAAATACCTGTTTGATGATGTCACTGCCTAACTAACCGTTACTGGTACAA
GTACCTGTTTGATGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCGACTGACTG
TTACTGGAACAAGTACCTGTTTGATGATGTCACTGGCCAACTGACCGTTACTGGTACAAGTACCT
GTTTGATGATATCACTGCCCAACTGACTGTTACTGGTACAAGTACCTGTTTAATGATGTCACTGA
TCGACTGACTGTTACTGTTAAATGATGTCACTGCCCAACTGACCGTTACTGATACAAGAACCTGT
TTGATGATGTCACTGATCGAC
Found at i:640874 original size:77 final size:77
Alignment explanation
Indices: 640741--640906 Score: 253
Period size: 77 Copynumber: 2.2 Consensus size: 77
640731 ACTGATCGAC
* * *
640741 TGACCGTTACTGGTACAAATACCTGTTTGATGATGTCACTGCCTAACTAACCGTTACTGGTACAA
1 TGACTGTTACTGGTACAAATACCTGTTTGATGATGTCACTGCCCAACTAACCGTTACTGGAACAA
640806 GTACCTGTTTGA
66 GTACCTGTTTGA
* * * *
640818 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCGACTGACTGTTACTGGAACAA
1 TGACTGTTACTGGTACAAATACCTGTTTGATGATGTCACTGCCCAACTAACCGTTACTGGAACAA
640883 GTACCTGTTTGA
66 GTACCTGTTTGA
*
640895 TGA-TGTCACTGG
1 TGACTGTTACTGG
640907 CCAACTGACC
Statistics
Matches: 81, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
76 8 0.10
77 73 0.90
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (77 bp):
TGACTGTTACTGGTACAAATACCTGTTTGATGATGTCACTGCCCAACTAACCGTTACTGGAACAA
GTACCTGTTTGA
Found at i:640926 original size:299 final size:291
Alignment explanation
Indices: 640271--641251 Score: 1054
Period size: 299 Copynumber: 3.3 Consensus size: 291
640261 ACCTGTTTGA
*
640271 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAACTGACCGTTACTGATACAA
1 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAACTGACCGTTACTGGTACAA
*
640336 GTACCTGTTTGATGATGTCACTGCCCGACTGACTGTTACTGGTACAAGTACCTGTTTGATGACTG
66 GTACCTGTTTGATGATGTCACTGCCCGACTGACTGTTACTGGTACAAGTACCTGTTTAATGACTG
* * *
640401 TTACTGGTACAA-ATACCTGTTTGATGATGTCACTGCCTAACTAACCGTTACTGGTACAAGTACC
131 TTACTGATACAAGA-ACCTGTTTGATGATGTCACTGCC-AACTGACCGTTACTGGTACAAATACC
* * * * * * ***
640465 TGTTTGATGACTGTTACTGGTACAAGTACCTGTT--TGAT-GATGT-CACTGCCCGACTGACTGT
194 TGTTTGATGA-TGTCACTGATACTA--ACC-GTTACTGGTACAAGTAC-CTGTTTGA-TGACTGT
* *
640526 TACTGGAACAAGTACCTGTTTGATGATGTCACTGGCCAAC
253 TACTGG-ACAAGTACCTGTTTGATGATGTCACTGCCCGAC
* * *
640566 TGACCGTTACTGGTACAAGTACCTGTTTGATGATATCACTGCCCAACTGACTGTTACTGGTACAA
1 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAACTGACCGTTACTGGTACAA
* ** * * ***
640631 GTACCTGTTTAATGATGTCACTGATCGACTGACTGTTACTGTTA-AATGATGTCACTGCCCAACT
66 GTACCTGTTTGATGATGTCACTGCCCGACTGACTGTTACTGGTACAA-G-T-AC-CTGTTTAA-T
* * *
640695 GACCGTTACTGATACAAGAACCTGTTTGATGATGTCACTGATCGACTGACCGTTACTGGTACAAA
126 GACTGTTACTGATACAAGAACCTGTTTGATGATGTCACTG-CCAACTGACCGTTACTGGTACAAA
*
640760 TACCTGTTTGATGATGTCACTGCCTAACTAACCGTTACTGGTACAAGTACCTGTTTGATGACTGT
190 TACCTGTTTGATGATGTCACTG-AT-ACTAACCGTTACTGGTACAAGTACCTGTTTGATGACTGT
640825 TACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCGAC
253 TACTGG-ACAAGTACCTGTTTGATGATGTCACTGCCCGAC
* *
640865 TGACTGTTACTGGAACAAGTACCTGTTTGATGATGTCACTGGCCAACTGACCGTTACTGGTACAA
1 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAACTGACCGTTACTGGTACAA
* *
640930 GTACCTGTTTGATGATATCACTGCCCAACTGACTGTTACTGGTACAAGTACCTGTTTAATGA-TG
66 GTACCTGTTTGATGATGTCACTGCCCGACTGACTGTTACTGGTACAAGTACCTGTTTAATGACTG
* * * ** *
640994 TCACTGATCGACTGACTGTTA-CTGTTAAATGATGTCACTGCCCAACTGACCGTTACTGATACAA
131 TTACTGAT--AC--A-AG-AACCTGTTTGATGATGTCACTG-CCAACTGACCGTTACTGGTACAA
* * *
641058 GA-ACCTGTTTGATGATGTCACTGATCGACTGACTGTTACTGGTACAAATACCTGTTTGATGA-T
189 -ATACCTGTTTGATGATGTCACTGAT--ACTAACCGTTACTGGTACAAGTACCTGTTTGATGACT
* * * * * * ***
641121 GTCACT-GCCTAACTAACC-GTTACTGGTACAAGT-ACCTGTTTGA-
251 GTTACTGGAC-AAGT-ACCTGTT--TGAT-GATGTCA-CTGCCCGAC
* * *
641164 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCGACTGACTGTTACTGGAACAA
1 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAACTGACCGTTACTGGTACAA
641229 GTACCTGTTTGATGATGTCACTG
66 GTACCTGTTTGATGATGTCACTG
641252 GCTTGTTGTT
Statistics
Matches: 582, Mismatches: 76, Indels: 52
0.82 0.11 0.07
Matches are distributed among these distances:
294 10 0.02
295 105 0.18
296 9 0.02
297 12 0.02
298 26 0.04
299 394 0.68
300 25 0.04
301 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (291 bp):
TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAACTGACCGTTACTGGTACAA
GTACCTGTTTGATGATGTCACTGCCCGACTGACTGTTACTGGTACAAGTACCTGTTTAATGACTG
TTACTGATACAAGAACCTGTTTGATGATGTCACTGCCAACTGACCGTTACTGGTACAAATACCTG
TTTGATGATGTCACTGATACTAACCGTTACTGGTACAAGTACCTGTTTGATGACTGTTACTGGAC
AAGTACCTGTTTGATGATGTCACTGCCCGAC
Found at i:640984 original size:94 final size:93
Alignment explanation
Indices: 640818--641176 Score: 427
Period size: 94 Copynumber: 4.0 Consensus size: 93
640808 ACCTGTTTGA
* * * *
640818 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCGACTGACTGTTACTGGAACAA
1 TGACCGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAACTGACCGTTACTGGTACAA
640883 GTACCTGTTTGATGATGTCACTGGCCAAC
66 GTACCTGTTTGATGATGTCACTGG-CAAC
* *
640912 TGACCGTTACTGGTACAAGTACCTGTTTGATGATATCACTGCCCAACTGACTGTTACTGGTACAA
1 TGACCGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAACTGACCGTTACTGGTACAA
* *
640977 GTACCTGTTTAATGATGTCACT-G-ATC
66 GTACCTGTTTGATGATGTCACTGGCAAC
* ** *
641003 -GA-C-TGACT-GT-----TA-CTGTTAAATGATGTCACTGCCCAACTGACCGTTACTGATACAA
1 TGACCGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAACTGACCGTTACTGGTACAA
* * *
641058 GAACCTGTTTGATGATGTCACTGATCGAC
66 GTACCTGTTTGATGATGTCACTG-GCAAC
* * * *
641087 TGACTGTTACTGGTACAAATACCTGTTTGATGATGTCACTGCCTAACTAACCGTTACTGGTACAA
1 TGACCGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAACTGACCGTTACTGGTACAA
*
641152 GTACCTGTTTGATGACTGTTACTGG
66 GTACCTGTTTGATGA-TGTCACTGG
641177 TACAAGTACC
Statistics
Matches: 224, Mismatches: 27, Indels: 28
0.80 0.10 0.10
Matches are distributed among these distances:
81 58 0.26
82 2 0.01
84 1 0.00
85 2 0.01
87 6 0.03
88 6 0.03
89 1 0.00
90 2 0.01
91 2 0.01
93 3 0.01
94 134 0.60
95 7 0.03
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (93 bp):
TGACCGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCAACTGACCGTTACTGGTACAA
GTACCTGTTTGATGATGTCACTGGCAAC
Found at i:641025 original size:34 final size:34
Alignment explanation
Indices: 640981--641051 Score: 97
Period size: 34 Copynumber: 2.1 Consensus size: 34
640971 GTACAAGTAC
* * * *
640981 CTGTTTAATGATGTCACTGATCGACTGACTGTTA
1 CTGTTAAATGATGTCACTGACCAACTGACCGTTA
*
641015 CTGTTAAATGATGTCACTGCCCAACTGACCGTTA
1 CTGTTAAATGATGTCACTGACCAACTGACCGTTA
641049 CTG
1 CTG
641052 ATACAAGAAC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.34
Consensus pattern (34 bp):
CTGTTAAATGATGTCACTGACCAACTGACCGTTA
Found at i:641036 original size:81 final size:81
Alignment explanation
Indices: 640941--641098 Score: 271
Period size: 81 Copynumber: 2.0 Consensus size: 81
640931 TACCTGTTTG
* * *
640941 ATGATATCACTGCCCAACTGACTGTTACTGGTACAAGTACCTGTTTAATGATGTCACTGATCGAC
1 ATGATATCACTGCCCAACTGACCGTTACTGATACAAGAACCTGTTTAATGATGTCACTGATCGAC
641006 TGACTGTTACTGTTAA
66 TGACTGTTACTGTTAA
* *
641022 ATGATGTCACTGCCCAACTGACCGTTACTGATACAAGAACCTGTTTGATGATGTCACTGATCGAC
1 ATGATATCACTGCCCAACTGACCGTTACTGATACAAGAACCTGTTTAATGATGTCACTGATCGAC
641087 TGACTGTTACTG
66 TGACTGTTACTG
641099 GTACAAATAC
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
81 72 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.32
Consensus pattern (81 bp):
ATGATATCACTGCCCAACTGACCGTTACTGATACAAGAACCTGTTTAATGATGTCACTGATCGAC
TGACTGTTACTGTTAA
Found at i:641089 original size:47 final size:46
Alignment explanation
Indices: 641022--641175 Score: 193
Period size: 47 Copynumber: 3.3 Consensus size: 46
641012 TTACTGTTAA
*
641022 ATGATGTCACTGCCCAACTGACCGTTACTGATACAAGAACCTGTTTG
1 ATGATGTCACTG-CCAACTGACCGTTACTGGTACAAGAACCTGTTTG
* * *
641069 ATGATGTCACTGATCGACTGACTGTTACTGGTACAA-ATACCTGTTTG
1 ATGATGTCACTG-CCAACTGACCGTTACTGGTACAAGA-ACCTGTTTG
* *
641116 ATGATGTCACTGCCTAACTAACCGTTACTGGTACAAGTACCTGTTTG
1 ATGATGTCACTGCC-AACTGACCGTTACTGGTACAAGAACCTGTTTG
*
641163 ATGACTGTTACTG
1 ATGA-TGTCACTG
641176 GTACAAGTAC
Statistics
Matches: 92, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
46 2 0.02
47 83 0.90
48 7 0.08
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (46 bp):
ATGATGTCACTGCCAACTGACCGTTACTGGTACAAGAACCTGTTTG
Found at i:641175 original size:30 final size:29
Alignment explanation
Indices: 641139--641204 Score: 114
Period size: 30 Copynumber: 2.2 Consensus size: 29
641129 CTAACTAACC
641139 GTTACTGGTACAAGTACCTGTTTGATGACT
1 GTTACTGGTACAAGTACCTGTTTGATGA-T
641169 GTTACTGGTACAAGTACCTGTTTGATGAT
1 GTTACTGGTACAAGTACCTGTTTGATGAT
*
641198 GTCACTG
1 GTTACTG
641205 CCCGACTGAC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
29 7 0.20
30 28 0.80
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.36
Consensus pattern (29 bp):
GTTACTGGTACAAGTACCTGTTTGATGAT
Found at i:641220 original size:77 final size:77
Alignment explanation
Indices: 641087--641252 Score: 262
Period size: 77 Copynumber: 2.2 Consensus size: 77
641077 ACTGATCGAC
* *
641087 TGACTGTTACTGGTACAAATACCTGTTTGATGATGTCACTGCCTAACTAACCGTTACTGGTACAA
1 TGACTGTTACTGGTACAAATACCTGTTTGATGATGTCACTGCCCAACTAACCGTTACTGGAACAA
641152 GTACCTGTTTGA
66 GTACCTGTTTGA
* * * *
641164 TGACTGTTACTGGTACAAGTACCTGTTTGATGATGTCACTGCCCGACTGACTGTTACTGGAACAA
1 TGACTGTTACTGGTACAAATACCTGTTTGATGATGTCACTGCCCAACTAACCGTTACTGGAACAA
641229 GTACCTGTTTGA
66 GTACCTGTTTGA
*
641241 TGA-TGTCACTGG
1 TGACTGTTACTGG
641253 CTTGTTGTTC
Statistics
Matches: 82, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
76 8 0.10
77 74 0.90
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.33
Consensus pattern (77 bp):
TGACTGTTACTGGTACAAATACCTGTTTGATGATGTCACTGCCCAACTAACCGTTACTGGAACAA
GTACCTGTTTGA
Found at i:644487 original size:7 final size:7
Alignment explanation
Indices: 644477--644515 Score: 60
Period size: 7 Copynumber: 5.4 Consensus size: 7
644467 AAAATTGTTA
644477 ACGCACG
1 ACGCACG
644484 ACGCACAG
1 ACGCAC-G
644492 ACGCACG
1 ACGCACG
*
644499 ACGCACA
1 ACGCACG
644506 ACGCACG
1 ACGCACG
644513 ACG
1 ACG
644516 ACGGACGAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
7 22 0.76
8 7 0.24
ACGTcount: A:0.33, C:0.41, G:0.26, T:0.00
Consensus pattern (7 bp):
ACGCACG
Found at i:644497 original size:15 final size:14
Alignment explanation
Indices: 644476--644515 Score: 71
Period size: 15 Copynumber: 2.8 Consensus size: 14
644466 TAAAATTGTT
644476 AACGCACGACGCAC
1 AACGCACGACGCAC
644490 AGACGCACGACGCAC
1 A-ACGCACGACGCAC
644505 AACGCACGACG
1 AACGCACGACG
644516 ACGGACGAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
14 11 0.44
15 14 0.56
ACGTcount: A:0.35, C:0.40, G:0.25, T:0.00
Consensus pattern (14 bp):
AACGCACGACGCAC
Found at i:645887 original size:20 final size:20
Alignment explanation
Indices: 645841--645911 Score: 67
Period size: 20 Copynumber: 3.6 Consensus size: 20
645831 ATTGTATTTG
*
645841 ATCACATAATACAATATCAT
1 ATCATATAATACAATATCAT
**
645861 AAAATATAATACAATAT-AGT
1 ATCATATAATACAATATCA-T
645881 ATCATAT--TACAATATCAT
1 ATCATATAATACAATATCAT
* *
645899 ATTACATAATACA
1 ATCATATAATACA
645912 TCATAACACT
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
18 14 0.35
19 2 0.05
20 24 0.60
ACGTcount: A:0.52, C:0.14, G:0.01, T:0.32
Consensus pattern (20 bp):
ATCATATAATACAATATCAT
Found at i:645898 original size:13 final size:13
Alignment explanation
Indices: 645880--645904 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
645870 TACAATATAG
645880 TATCATATTACAA
1 TATCATATTACAA
645893 TATCATATTACA
1 TATCATATTACA
645905 TAATACATCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.16, G:0.00, T:0.40
Consensus pattern (13 bp):
TATCATATTACAA
Found at i:646165 original size:15 final size:15
Alignment explanation
Indices: 646134--646263 Score: 93
Period size: 15 Copynumber: 8.1 Consensus size: 15
646124 ACACAATAAA
*
646134 ATATATTACAATATC
1 ATATAATACAATATC
*
646149 ATATAATACAATTTC
1 ATATAATACAATATC
646164 ATGTGATATGATA-ATATATC
1 A--T-ATA--ATACA-ATATC
646184 ATATAA-ACCAATATC
1 ATATAATA-CAATATC
*
646199 ATATCATACAATATC
1 ATATAATACAATATC
* * *
646214 GTATGATACAATATT
1 ATATAATACAATATC
646229 ATATAATATTACAATATC
1 ATAT-A-A-TACAATATC
*
646247 ATATAATACAATTTC
1 ATATAATACAATATC
646262 AT
1 AT
646264 GTGATATAAT
Statistics
Matches: 92, Mismatches: 11, Indels: 24
0.72 0.09 0.19
Matches are distributed among these distances:
14 1 0.01
15 57 0.62
16 3 0.03
17 6 0.07
18 16 0.17
19 1 0.01
20 8 0.09
ACGTcount: A:0.46, C:0.12, G:0.04, T:0.38
Consensus pattern (15 bp):
ATATAATACAATATC
Found at i:646243 original size:18 final size:18
Alignment explanation
Indices: 646220--646254 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
646210 TATCGTATGA
*
646220 TACAATATTATATAATAT
1 TACAATATCATATAATAT
646238 TACAATATCATATAATA
1 TACAATATCATATAATA
646255 CAATTTCATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (18 bp):
TACAATATCATATAATAT
Found at i:646254 original size:98 final size:98
Alignment explanation
Indices: 646136--646342 Score: 321
Period size: 98 Copynumber: 2.1 Consensus size: 98
646126 ACAATAAAAT
*
646136 ATATTACAATATCATATAATACAATTTCATGTGATATGATAATATATCATA-T-AAACCAATATC
1 ATATTACAATATCATATAATACAATTTCATGTGATATAATAATATAT--TACTGAAACCAATATC
*
646199 ATATCATACAATATCGTATGATACAATATTATATA
64 ATATCATACAATATCGTATGATACAATATTATAGA
**
646234 ATATTACAATATCATATAATACAATTTCATGTGATATAATTCTATATTACTGAAACCAATATCAT
1 ATATTACAATATCATATAATACAATTTCATGTGATATAATAATATATTACTGAAACCAATATCAT
* *
646299 ATTATACAATATTGTATGATACAATATTATAGA
66 ATCATACAATATCGTATGATACAATATTATAGA
646332 ATA-TACAATAT
1 ATATTACAATAT
646343 TGTATCATAG
Statistics
Matches: 101, Mismatches: 6, Indels: 5
0.90 0.05 0.04
Matches are distributed among these distances:
96 2 0.02
97 9 0.09
98 90 0.89
ACGTcount: A:0.45, C:0.12, G:0.05, T:0.38
Consensus pattern (98 bp):
ATATTACAATATCATATAATACAATTTCATGTGATATAATAATATATTACTGAAACCAATATCAT
ATCATACAATATCGTATGATACAATATTATAGA
Found at i:646306 original size:50 final size:47
Alignment explanation
Indices: 646142--646308 Score: 165
Period size: 50 Copynumber: 3.4 Consensus size: 47
646132 AAATATATTA
* *
646142 CAATATCATATAATACAATTTCATGTGATATGATAATATATCATATAAAC
1 CAATATCATATAATACAATTTCATGTGATATAAT-TTATAT--TATAAAC
* * * * * * *
646192 CAATATCATATCATACAATATCGTATGATACAATATTATATAATATTA-
1 CAATATCATATAATACAATTTCATGTGATATAAT-TTATATTATA-AAC
646240 CAATATCATATAATACAATTTCATGTGATATAATTCTATATTACTGAAAC
1 CAATATCATATAATACAATTTCATGTGATATAATT-TATATTA-T-AAAC
*
646290 CAATATCATATTATACAAT
1 CAATATCATATAATACAAT
646309 ATTGTATGAT
Statistics
Matches: 95, Mismatches: 17, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
47 1 0.01
48 38 0.40
49 3 0.03
50 53 0.56
ACGTcount: A:0.45, C:0.13, G:0.05, T:0.37
Consensus pattern (47 bp):
CAATATCATATAATACAATTTCATGTGATATAATTTATATTATAAAC
Found at i:646308 original size:15 final size:15
Alignment explanation
Indices: 646179--646325 Score: 73
Period size: 15 Copynumber: 9.3 Consensus size: 15
646169 ATATGATAAT
*
646179 ATATCATA-TAAACCA
1 ATATCATATTATA-CA
*
646194 ATATCATATCATACA
1 ATATCATATTATACA
* *
646209 ATATCGTATGATACA
1 ATATCATATTATACA
*
646224 ATATTATATAATATTACA
1 ATATCATAT--TA-TACA
*
646242 ATATCATATAATACA
1 ATATCATATTATACA
* * * *
646257 ATTTCATGTGATATA
1 ATATCATATTATACA
646272 AT-TCTATATTACTGAAACCA
1 ATATC-ATATTA-T---A-CA
646292 ATATCATATTATACA
1 ATATCATATTATACA
** *
646307 ATATTGTATGATACA
1 ATATCATATTATACA
646322 ATAT
1 ATAT
646326 TATAGAATAT
Statistics
Matches: 102, Mismatches: 19, Indels: 22
0.71 0.13 0.15
Matches are distributed among these distances:
14 2 0.02
15 69 0.68
16 5 0.05
17 1 0.01
18 12 0.12
19 2 0.02
20 9 0.09
21 2 0.02
ACGTcount: A:0.45, C:0.13, G:0.05, T:0.37
Consensus pattern (15 bp):
ATATCATATTATACA
Found at i:646367 original size:32 final size:32
Alignment explanation
Indices: 646301--646367 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 32
646291 AATATCATAT
* **
646301 TATACAATATTGTATGATACAATATTATAGAA
1 TATACAATATTGTATCATACAATACAATAGAA
** *
646333 TATACAATATTGTATCATAGGATACAATATAA
1 TATACAATATTGTATCATACAATACAATAGAA
646365 TAT
1 TAT
646368 TTTGCAATAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.46, C:0.07, G:0.09, T:0.37
Consensus pattern (32 bp):
TATACAATATTGTATCATACAATACAATAGAA
Found at i:646486 original size:18 final size:18
Alignment explanation
Indices: 646463--646497 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
646453 ATACAATACT
646463 ATACATAA-CAATATCATG
1 ATACATAATC-ATATCATG
646481 ATACATAATCATATCAT
1 ATACATAATCATATCAT
646498 AAAATATCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 15 0.94
19 1 0.06
ACGTcount: A:0.49, C:0.17, G:0.03, T:0.31
Consensus pattern (18 bp):
ATACATAATCATATCATG
Found at i:646591 original size:20 final size:20
Alignment explanation
Indices: 646568--646620 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
646558 ATATGATATC
646568 ATATTGTATCATATCAAACA
1 ATATTGTATCATATCAAACA
* *
646588 ATATTGTTTCATATCATACA
1 ATATTGTATCATATCAAACA
646608 ATACTT-TATCATA
1 ATA-TTGTATCATA
646621 GGAATCATGT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 27 0.93
21 2 0.07
ACGTcount: A:0.40, C:0.15, G:0.04, T:0.42
Consensus pattern (20 bp):
ATATTGTATCATATCAAACA
Found at i:647322 original size:19 final size:19
Alignment explanation
Indices: 647298--647337 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
647288 GCACCCGCAA
* *
647298 CAAAAACTTTAACCTGCTC
1 CAAAAACCTTAACCTCCTC
647317 CAAAAACCTTAACCTCCTC
1 CAAAAACCTTAACCTCCTC
647336 CA
1 CA
647338 GCATCCGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.38, G:0.03, T:0.23
Consensus pattern (19 bp):
CAAAAACCTTAACCTCCTC
Found at i:647582 original size:177 final size:177
Alignment explanation
Indices: 647281--647671 Score: 728
Period size: 177 Copynumber: 2.2 Consensus size: 177
647271 GACTATGCAT
* * *
647281 TCAATGGGCACCCGCAACAAAAACTTTAACCTGCTCCAAAAACCTTAACCTCCTCCAGCATCCGA
1 TCAAAGGGCACCTGCAACAAAAACTTTAACCTGGTCCAAAAACCTTAACCTCCTCCAGCATCCGA
647346 AACCTATAGCTCAGATTCAGCACTCAAGCCTGTCTGGTGCATCAGTATCATAAGGCACACCATCC
66 AACCTATAGCTCAGATTCAGCACTCAAGCCTGTCTGGTGCATCAGTATCATAAGGCACACCATCC
647411 ATGCAAGTTTGGTGAAGTACAGACCAGCAGTAACTAAGATACTGCTA
131 ATGCAAGTTTGGTGAAGTACAGACCAGCAGTAACTAAGATACTGCTA
*
647458 TCAAAGGGCACCTGCAACAAAAACTTTAACCTGGTCCAACAACCTTAACCTCCTCCAGCATCCGA
1 TCAAAGGGCACCTGCAACAAAAACTTTAACCTGGTCCAAAAACCTTAACCTCCTCCAGCATCCGA
647523 AACCTATAGCTCAGATTCAGCACTCAAGCCTGTCTGGTGCATCAGTATCATAAGGCACACCATCC
66 AACCTATAGCTCAGATTCAGCACTCAAGCCTGTCTGGTGCATCAGTATCATAAGGCACACCATCC
*
647588 ATGCAAGTTTGGTGGAGTACAGACCAGCAGTAACTAAGATACTGCTA
131 ATGCAAGTTTGGTGAAGTACAGACCAGCAGTAACTAAGATACTGCTA
*
647635 TCAAAGGGCACCTGCAACAAAAACTTTAACCAGGTCC
1 TCAAAGGGCACCTGCAACAAAAACTTTAACCTGGTCC
647672 GGACGCCGAC
Statistics
Matches: 208, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
177 208 1.00
ACGTcount: A:0.33, C:0.29, G:0.17, T:0.21
Consensus pattern (177 bp):
TCAAAGGGCACCTGCAACAAAAACTTTAACCTGGTCCAAAAACCTTAACCTCCTCCAGCATCCGA
AACCTATAGCTCAGATTCAGCACTCAAGCCTGTCTGGTGCATCAGTATCATAAGGCACACCATCC
ATGCAAGTTTGGTGAAGTACAGACCAGCAGTAACTAAGATACTGCTA
Found at i:647684 original size:6 final size:6
Alignment explanation
Indices: 647673--647710 Score: 60
Period size: 6 Copynumber: 6.3 Consensus size: 6
647663 ACCAGGTCCG
647673 GACGCC GACGCC GACGCC GACGCC -ACCGCC GACGCC GA
1 GACGCC GACGCC GACGCC GACGCC GA-CGCC GACGCC GA
647711 GGGTATAGCA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 1 0.03
6 28 0.93
7 1 0.03
ACGTcount: A:0.18, C:0.50, G:0.32, T:0.00
Consensus pattern (6 bp):
GACGCC
Found at i:652901 original size:2 final size:2
Alignment explanation
Indices: 652896--652936 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
652886 TATGTTTTTT
652896 AG AG AG AG AG AG AG AG AG AG -G AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
652937 NNNNNNNNNN
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
AG
Found at i:653822 original size:31 final size:31
Alignment explanation
Indices: 653788--654229 Score: 486
Period size: 31 Copynumber: 14.8 Consensus size: 31
653778 NNNNNNACAT
* *
653788 CCACACAGCCAGGGTCAGGGAAGACCAACAT
1 CCACACAGCCAGGGTCAGGGAAGACCCACAC
* *
653819 CCACACAGCCAGGGTCAGGGAAGACCAACAT
1 CCACACAGCCAGGGTCAGGGAAGACCCACAC
* *
653850 CCACACAGCCAGGGTCAGGGAAGACCAACAT
1 CCACACAGCCAGGGTCAGGGAAGACCCACAC
* *
653881 CCACACAGCCAGGGTCAGGGAAGACCAACAT
1 CCACACAGCCAGGGTCAGGGAAGACCCACAC
* * ** *
653912 CCACACAACCTGGGTCAGGGAAGTTCCACAT
1 CCACACAGCCAGGGTCAGGGAAGACCCACAC
* * *
653943 CCACACATCCAGGGCCAGGGAAGTCCCACAC
1 CCACACAGCCAGGGTCAGGGAAGACCCACAC
* * *
653974 CCACATACCCAGGGTCA-AGAAGACCCACAC
1 CCACACAGCCAGGGTCAGGGAAGACCCACAC
* * *
654004 CCATACAGCTAGGGTCAGGGAAGTCCCACAC
1 CCACACAGCCAGGGTCAGGGAAGACCCACAC
* * *
654035 CCATACAGCCAGGGTCAGAGAAGACCCATAC
1 CCACACAGCCAGGGTCAGGGAAGACCCACAC
* *
654066 CCACACAACCAGGGTCTGGGAAG------A-
1 CCACACAGCCAGGGTCAGGGAAGACCCACAC
654090 -CACACAGCCAGGGTCAGGGAAGACCCACAC
1 CCACACAGCCAGGGTCAGGGAAGACCCACAC
*
654120 CCACACAGTCAGGGTCAGGGAAGACCCACAC
1 CCACACAGCCAGGGTCAGGGAAGACCCACAC
* *
654151 CCATACAGCCAGGGTCA-GG-A-A---AGA-
1 CCACACAGCCAGGGTCAGGGAAGACCCACAC
*
654175 -CACACAGCCAGGGTCAGGGAAGTCCCACAC
1 CCACACAGCCAGGGTCAGGGAAGACCCACAC
654205 CCACACAGCCAGGGTCAGGGAAGAC
1 CCACACAGCCAGGGTCAGGGAAGAC
654230 ACAGGGTCAG
Statistics
Matches: 355, Mismatches: 39, Indels: 34
0.83 0.09 0.08
Matches are distributed among these distances:
23 35 0.10
24 2 0.01
25 4 0.01
28 1 0.00
29 4 0.01
30 26 0.07
31 283 0.80
ACGTcount: A:0.33, C:0.34, G:0.25, T:0.08
Consensus pattern (31 bp):
CCACACAGCCAGGGTCAGGGAAGACCCACAC
Found at i:653881 original size:62 final size:62
Alignment explanation
Indices: 653788--654398 Score: 470
Period size: 62 Copynumber: 9.9 Consensus size: 62
653778 NNNNNNACAT
* * *
653788 CCACACAGCCAGGGTCAGGGAAGACCAACATCCACACAGCCAGGGTCAGGGAAGACCAACAT
1 CCACACAGCCAGGGTCAGGGAAGACCAACACCCACACAGCCAGGGTCAGGGAAGACCCACAC
* * *
653850 CCACACAGCCAGGGTCAGGGAAGACCAACATCCACACAGCCAGGGTCAGGGAAGACCAACAT
1 CCACACAGCCAGGGTCAGGGAAGACCAACACCCACACAGCCAGGGTCAGGGAAGACCCACAC
* * * * * * *
653912 CCACACAACCTGGGTCAGGGAAGTTCC-ACATCCACACATCCAGGGCCAGGGAAGTCCCACAC
1 CCACACAGCCAGGGTCAGGGAAG-ACCAACACCCACACAGCCAGGGTCAGGGAAGACCCACAC
* * * * * * *
653974 CCACATACCCAGGGTCA-AGAAGACCCACACCCATACAGCTAGGGTCAGGGAAGTCCCACAC
1 CCACACAGCCAGGGTCAGGGAAGACCAACACCCACACAGCCAGGGTCAGGGAAGACCCACAC
* * * * * *
654035 CCATACAGCCAGGGTCAGAGAAGACCCATACCCACACAACCAGGGTCTGGGAAG------A-
1 CCACACAGCCAGGGTCAGGGAAGACCAACACCCACACAGCCAGGGTCAGGGAAGACCCACAC
* *
654090 -CACACAGCCAGGGTCAGGGAAGACCCACACCCACACAGTCAGGGTCAGGGAAGACCCACAC
1 CCACACAGCCAGGGTCAGGGAAGACCAACACCCACACAGCCAGGGTCAGGGAAGACCCACAC
* * *
654151 CCATACAGCCAGGGTCA--G--GA--AAGA--CACACAGCCAGGGTCAGGGAAGTCCCACAC
1 CCACACAGCCAGGGTCAGGGAAGACCAACACCCACACAGCCAGGGTCAGGGAAGACCCACAC
* ** *
654205 CCACACAGCCAGGGTCAGGGAAGACACAGGGTCAGGGAAGACCCACAC--CCATACAGCCAGGGT
1 CCACACAGCCAGGGTCAGGGAAG--AC-----C----AACACCCACACAGCC--AGGGTCA-G--
* *
654268 CAGGGAAGACACACAT
50 ---GGAAGACCCACAC
* * * * * * *
654284 CCACACAGCCAGGGTCAGGGAAGACCCACACCAACAGAGCCAGTGTCAGGAAAGTCTCACAC
1 CCACACAGCCAGGGTCAGGGAAGACCAACACCCACACAGCCAGGGTCAGGGAAGACCCACAC
* * * *
654346 CCACACAGCCAGGGTCAGGGAAGGCCCACACCCATACAGCCTGGGTCAGGGAA
1 CCACACAGCCAGGGTCAGGGAAGACCAACACCCACACAGCCAGGGTCAGGGAA
654399 AAAACACACA
Statistics
Matches: 447, Mismatches: 62, Indels: 80
0.76 0.11 0.14
Matches are distributed among these distances:
54 91 0.20
56 4 0.01
58 3 0.01
60 5 0.01
61 48 0.11
62 228 0.51
63 2 0.00
67 1 0.00
68 11 0.02
70 2 0.00
71 6 0.01
72 1 0.00
73 9 0.02
74 1 0.00
77 2 0.00
79 33 0.07
ACGTcount: A:0.33, C:0.33, G:0.26, T:0.08
Consensus pattern (62 bp):
CCACACAGCCAGGGTCAGGGAAGACCAACACCCACACAGCCAGGGTCAGGGAAGACCCACAC
Found at i:653943 original size:93 final size:92
Alignment explanation
Indices: 653788--654229 Score: 473
Period size: 85 Copynumber: 4.9 Consensus size: 92
653778 NNNNNNACAT
* * * * *
653788 CCACACAGCCAGGGTCAGGGAAGACCAACATCCACACAGCCAGGGTCAGGGAAGACCAACATCCA
1 CCACACAGCCAGGGTCAGGGAAGACC-ACACCCACACAACCAGGGTCAGGGAAGTCCCACACCCA
* *
653853 CACAGCCAGGGTCAGGGAAGACCAACAT
65 CACAGCCAGGGTCAGGGAAGACCCACAC
* * * *
653881 CCACACAGCCAGGGTCAGGGAAGACCAACATCCACACAACCTGGGTCAGGGAAGTTCCACATCCA
1 CCACACAGCCAGGGTCAGGGAAGACC-ACACCCACACAACCAGGGTCAGGGAAGTCCCACACCCA
* * *
653946 CACATCCAGGGCCAGGGAAGTCCCACAC
65 CACAGCCAGGGTCAGGGAAGACCCACAC
* * * * * *
653974 CCACATACCCAGGGTCA-AGAAGACCCACACCCATACAGCTAGGGTCAGGGAAGTCCCACACCCA
1 CCACACAGCCAGGGTCAGGGAAGA-CCACACCCACACAACCAGGGTCAGGGAAGTCCCACACCCA
* * *
654038 TACAGCCAGGGTCAGAGAAGACCCATAC
65 CACAGCCAGGGTCAGGGAAGACCCACAC
* * * *
654066 CCACACAACCAGGGTCTGGGAAG-----A--CACACAGCCAGGGTCAGGGAAGACCCACACCCAC
1 CCACACAGCCAGGGTCAGGGAAGACCACACCCACACAACCAGGGTCAGGGAAGTCCCACACCCAC
*
654124 ACAGTCAGGGTCAGGGAAGACCCACAC
66 ACAGCCAGGGTCAGGGAAGACCCACAC
* * *
654151 CCATACAGCCAGGGTCA-GG-A-A--AGA--CACACAGCCAGGGTCAGGGAAGTCCCACACCCAC
1 CCACACAGCCAGGGTCAGGGAAGACCACACCCACACAACCAGGGTCAGGGAAGTCCCACACCCAC
654209 ACAGCCAGGGTCAGGGAAGAC
66 ACAGCCAGGGTCAGGGAAGAC
654230 ACAGGGTCAG
Statistics
Matches: 302, Mismatches: 42, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
83 1 0.00
84 2 0.01
85 122 0.40
87 1 0.00
92 72 0.24
93 104 0.34
ACGTcount: A:0.33, C:0.34, G:0.25, T:0.08
Consensus pattern (92 bp):
CCACACAGCCAGGGTCAGGGAAGACCACACCCACACAACCAGGGTCAGGGAAGTCCCACACCCAC
ACAGCCAGGGTCAGGGAAGACCCACAC
Found at i:654100 original size:23 final size:23
Alignment explanation
Indices: 654067--654118 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
654057 GACCCATACC
*
654067 CACACAACCAGGGTCTGGGAAGA
1 CACACAACCAGGGTCAGGGAAGA
*
654090 CACACAGCCAGGGTCAGGGAAGA
1 CACACAACCAGGGTCAGGGAAGA
*
654113 CCCACA
1 CACACA
654119 CCCACACAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.35, C:0.31, G:0.29, T:0.06
Consensus pattern (23 bp):
CACACAACCAGGGTCAGGGAAGA
Found at i:654105 original size:54 final size:54
Alignment explanation
Indices: 654039--654149 Score: 168
Period size: 54 Copynumber: 2.1 Consensus size: 54
654029 CCACACCCAT
* *
654039 ACAGCCAGGGTCAGAGAAGACCCATACCCACACAACCAGGGTCTGGGAAGACAC
1 ACAGCCAGGGTCAGAGAAGACCCACACCCACACAACCAGGGTCAGGGAAGACAC
* ** *
654093 ACAGCCAGGGTCAGGGAAGACCCACACCCACACAGTCAGGGTCAGGGAAGACCC
1 ACAGCCAGGGTCAGAGAAGACCCACACCCACACAACCAGGGTCAGGGAAGACAC
654147 ACA
1 ACA
654150 CCCATACAGC
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.34, C:0.32, G:0.27, T:0.06
Consensus pattern (54 bp):
ACAGCCAGGGTCAGAGAAGACCCACACCCACACAACCAGGGTCAGGGAAGACAC
Found at i:654236 original size:17 final size:17
Alignment explanation
Indices: 654214--654246 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
654204 CCCACACAGC
654214 CAGGGTCAGGGAAGACA
1 CAGGGTCAGGGAAGACA
654231 CAGGGTCAGGGAAGAC
1 CAGGGTCAGGGAAGAC
654247 CCACACCCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.33, C:0.18, G:0.42, T:0.06
Consensus pattern (17 bp):
CAGGGTCAGGGAAGACA
Found at i:654251 original size:48 final size:48
Alignment explanation
Indices: 654129--654280 Score: 223
Period size: 48 Copynumber: 3.0 Consensus size: 48
654119 CCCACACAGT
*
654129 CAGGGTCAGGGAAGACCCACACCCATACAGCCAGGGTCAGGAAAGACACACA
1 CAGGGTCAGGGAAGACCCACACCCATACAGCCAGGGTCAGG---GA-AGACA
* *
654181 GCCAGGGTCAGGGAAGTCCCACACCCACACAGCCAGGGTCAGGGAAGACA
1 --CAGGGTCAGGGAAGACCCACACCCATACAGCCAGGGTCAGGGAAGACA
654231 CAGGGTCAGGGAAGACCCACACCCATACAGCCAGGGTCAGGGAAGACA
1 CAGGGTCAGGGAAGACCCACACCCATACAGCCAGGGTCAGGGAAGACA
654279 CA
1 CA
654281 CATCCACACA
Statistics
Matches: 93, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
48 48 0.52
50 4 0.04
51 2 0.02
54 39 0.42
ACGTcount: A:0.34, C:0.31, G:0.30, T:0.06
Consensus pattern (48 bp):
CAGGGTCAGGGAAGACCCACACCCATACAGCCAGGGTCAGGGAAGACA
Found at i:654301 original size:164 final size:166
Alignment explanation
Indices: 654093--654398 Score: 454
Period size: 164 Copynumber: 1.8 Consensus size: 166
654083 GGGAAGACAC
* * * *
654093 ACAGCCAGGGTCAGGGAAGACCCACACCCACACAGTCAGGGTCAGGGAAGACCCACACCCATACA
1 ACAGCCAGGGTCAGGGAAGACACACACCCACACAGCCAGGGTCAGGGAAGACCCACACCAACACA
*
654158 GCCAGGGTCAGGAAAG-A-CACACAGCCAGGGTCAGGGAAGTCCCACACCCACACAGCCAGGGTC
66 GCCAGGGTCAGGAAAGCACCACACAGCCAGGGTCAGGGAAGGCCCACACCCACACAGCCAGGGTC
654221 AGGGAAGACACAGGGTCAGGGAAGACCCACACCCAT
131 AGGGAAGACACAGGGTCAGGGAAGACCCACACCCAT
* *
654257 ACAGCCAGGGTCAGGGAAGACACACATCCACACAGCCAGGGTCAGGGAAGACCCACACCAACAGA
1 ACAGCCAGGGTCAGGGAAGACACACACCCACACAGCCAGGGTCAGGGAAGACCCACACCAACACA
* *
654322 GCCAGTGTCAGGAAAGTCTCACACCCACACAGCCAGGGTCAGGGAAGGCCCACACCCATACAGCC
66 GCCAGGGTCAGGAAAG-----CA-CCACACAGCCAGGGTCAGGGAAGGCCCACACCCACACAGCC
*
654387 TGGGTCAGGGAA
125 AGGGTCAGGGAA
654399 AAAACACACA
Statistics
Matches: 124, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
164 74 0.60
170 1 0.01
172 49 0.40
ACGTcount: A:0.33, C:0.33, G:0.28, T:0.07
Consensus pattern (166 bp):
ACAGCCAGGGTCAGGGAAGACACACACCCACACAGCCAGGGTCAGGGAAGACCCACACCAACACA
GCCAGGGTCAGGAAAGCACCACACAGCCAGGGTCAGGGAAGGCCCACACCCACACAGCCAGGGTC
AGGGAAGACACAGGGTCAGGGAAGACCCACACCCAT
Found at i:654407 original size:31 final size:31
Alignment explanation
Indices: 654231--654398 Score: 228
Period size: 31 Copynumber: 5.4 Consensus size: 31
654221 AGGGAAGACA
*
654231 CAGGGTCAGGGAAGACCCACACCCATACAGC
1 CAGGGTCAGGGAAGACCCACACCCACACAGC
* *
654262 CAGGGTCAGGGAAGACACACATCCACACAGC
1 CAGGGTCAGGGAAGACCCACACCCACACAGC
* *
654293 CAGGGTCAGGGAAGACCCACACCAACAGAGC
1 CAGGGTCAGGGAAGACCCACACCCACACAGC
* * * *
654324 CAGTGTCAGGAAAGTCTCACACCCACACAGC
1 CAGGGTCAGGGAAGACCCACACCCACACAGC
* *
654355 CAGGGTCAGGGAAGGCCCACACCCATACAGC
1 CAGGGTCAGGGAAGACCCACACCCACACAGC
*
654386 CTGGGTCAGGGAA
1 CAGGGTCAGGGAA
654399 AAAACACACA
Statistics
Matches: 118, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 118 1.00
ACGTcount: A:0.32, C:0.33, G:0.27, T:0.08
Consensus pattern (31 bp):
CAGGGTCAGGGAAGACCCACACCCACACAGC
Found at i:656643 original size:43 final size:43
Alignment explanation
Indices: 656582--657221 Score: 863
Period size: 43 Copynumber: 15.0 Consensus size: 43
656572 CCATGTACCG
*
656582 GATACA-AGAAATGCACAGTGAGTTATCAGTTAGTCATACAACA
1 GATACACAG-AATGCACAGTGAGTTATTAGTTAGTCATACAACA
* *
656625 GATACACAGAATGCACAGTGAG---TTA-TCAGTCATAGAACA
1 GATACACAGAATGCACAGTGAGTTATTAGTTAGTCATACAACA
*
656664 GATACACAGAATGCACAGTGAGTTATCAGTTAGTCATACAACA
1 GATACACAGAATGCACAGTGAGTTATTAGTTAGTCATACAACA
* *
656707 GATACACAGAATGCACAGTGAGTTATCAGTTAGTTATACAACA
1 GATACACAGAATGCACAGTGAGTTATTAGTTAGTCATACAACA
*
656750 GATACACAGAATGCACAGTGAGTTATCAGTTAGTCATACAACA
1 GATACACAGAATGCACAGTGAGTTATTAGTTAGTCATACAACA
* *
656793 GATACAGAGAATGCACAGTGACTTATTAGTTAGTCATACAACA
1 GATACACAGAATGCACAGTGAGTTATTAGTTAGTCATACAACA
* * * *
656836 GATATACAGAATACGCAGTGAGTTATTAGTGAGAT-ATACAACA
1 GATACACAGAATGCACAGTGAGTTATTAGTTAG-TCATACAACA
* *
656879 GATACACAGAATACACAGTGACTTATTAGTTAGTCATACAACA
1 GATACACAGAATGCACAGTGAGTTATTAGTTAGTCATACAACA
* *
656922 GATATACAGAATACACAGTGAGTTATTAGTTAGAT-ATACAACA
1 GATACACAGAATGCACAGTGAGTTATTAGTTAG-TCATACAACA
*
656965 GATACACAGAA--CACAGTGACTTATTAGTTAGTCATACAACA
1 GATACACAGAATGCACAGTGAGTTATTAGTTAGTCATACAACA
* * * *
657006 GATATACAGAATACGCAGTGAGTTATTAGTGAGAT-ATACAACA
1 GATACACAGAATGCACAGTGAGTTATTAGTTAG-TCATACAACA
* *
657049 GATACACAGAATACACAGTGACTTATTAGTTAGTCATACAACA
1 GATACACAGAATGCACAGTGAGTTATTAGTTAGTCATACAACA
657092 GATACACAGAATGCACAGTGAGTTATTAGTTAGAT-ATACAACA
1 GATACACAGAATGCACAGTGAGTTATTAGTTAG-TCATACAACA
* * *
657135 AATACACAGAATGCACAGTGAGTTATCAGGTAGTCATACAACA
1 GATACACAGAATGCACAGTGAGTTATTAGTTAGTCATACAACA
* * * *
657178 GATATACAGAATACGCAGTGAGTTATTAGTGAGAT-ATACAACA
1 GATACACAGAATGCACAGTGAGTTATTAGTTAG-TCATACAACA
657221 G
1 G
657222 TCAACCAAAA
Statistics
Matches: 536, Mismatches: 45, Indels: 32
0.87 0.07 0.05
Matches are distributed among these distances:
39 34 0.06
40 3 0.01
41 37 0.07
42 5 0.01
43 450 0.84
44 7 0.01
ACGTcount: A:0.41, C:0.16, G:0.18, T:0.25
Consensus pattern (43 bp):
GATACACAGAATGCACAGTGAGTTATTAGTTAGTCATACAACA
Found at i:665966 original size:23 final size:23
Alignment explanation
Indices: 665918--665966 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 23
665908 ACAATCAGAC
*
665918 ATTGGACACGGCCCTGTCGGCTG
1 ATTGGACACGGCCCTGTCGGCCG
665941 ATTGGACACGGCCCTGAT-GGCCG
1 ATTGGACACGGCCCTG-TCGGCCG
665964 ATT
1 ATT
665967 CTTTCTGTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 23 0.96
24 1 0.04
ACGTcount: A:0.16, C:0.29, G:0.33, T:0.22
Consensus pattern (23 bp):
ATTGGACACGGCCCTGTCGGCCG
Found at i:667516 original size:31 final size:32
Alignment explanation
Indices: 667464--667531 Score: 111
Period size: 31 Copynumber: 2.2 Consensus size: 32
667454 CTTGCATATG
667464 GTGGCTTGTGCTACCACTCACCAAATTTGGCT
1 GTGGCTTGTGCTACCACTCACCAAATTTGGCT
* *
667496 GTGGCTTGTGCTA-CACTCACCATATTTGGTT
1 GTGGCTTGTGCTACCACTCACCAAATTTGGCT
667527 GTGGC
1 GTGGC
667532 GGCCTGCCAC
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
31 21 0.62
32 13 0.38
ACGTcount: A:0.16, C:0.25, G:0.25, T:0.34
Consensus pattern (32 bp):
GTGGCTTGTGCTACCACTCACCAAATTTGGCT
Found at i:668095 original size:11 final size:11
Alignment explanation
Indices: 668076--668105 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
668066 GTTTTATGAC
*
668076 ATATGTATTAT
1 ATATATATTAT
668087 ATATATATTAT
1 ATATATATTAT
668098 ATATATAT
1 ATATATAT
668106 AGAGGATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (11 bp):
ATATATATTAT
Found at i:668481 original size:60 final size:60
Alignment explanation
Indices: 668407--668637 Score: 417
Period size: 60 Copynumber: 3.8 Consensus size: 60
668397 TGATCTCGAC
*
668407 TGAAATCAAAGACGACGTTTGGTGTAGAGCGGGTTACGGTCCTGTAGTTAGGGATGAGAT
1 TGAAATCAAAGACGACGTTTGGTGTAGCGCGGGTTACGGTCCTGTAGTTAGGGATGAGAT
*
668467 TGAAATCAAAGACGATGTTTGGTGTAGCGCGGGTTACGGTCCTGTAGTTAGGGATGAGAT
1 TGAAATCAAAGACGACGTTTGGTGTAGCGCGGGTTACGGTCCTGTAGTTAGGGATGAGAT
668527 TGAAATCAAAGACGACGTTTGGTGTAGCGCGGGTTACGGTCCTGTAGTTAGGGATGAGAT
1 TGAAATCAAAGACGACGTTTGGTGTAGCGCGGGTTACGGTCCTGTAGTTAGGGATGAGAT
* *
668587 TGAAATCAAAGACGACGTTTGGTGTAGCGCAGGTTAAGGTTCCTGTAGTTA
1 TGAAATCAAAGACGACGTTTGGTGTAGCGCGGGTTACGG-TCCTGTAGTTA
668638 ACGATAACTG
Statistics
Matches: 165, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
60 154 0.93
61 11 0.07
ACGTcount: A:0.26, C:0.13, G:0.34, T:0.28
Consensus pattern (60 bp):
TGAAATCAAAGACGACGTTTGGTGTAGCGCGGGTTACGGTCCTGTAGTTAGGGATGAGAT
Found at i:672967 original size:36 final size:36
Alignment explanation
Indices: 672898--672967 Score: 95
Period size: 36 Copynumber: 1.9 Consensus size: 36
672888 TTAGCTGTTG
* ** *
672898 GCCTTCAAGACTAATTTGTCTATAGTTTTCCTATAT
1 GCCTTCAAGACTAATATGTCTATAACTTACCTATAT
*
672934 GCCTTCAAGACTTATATGTCTATAACTTACCTAT
1 GCCTTCAAGACTAATATGTCTATAACTTACCTAT
672968 TGTTCTTTAG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.27, C:0.21, G:0.10, T:0.41
Consensus pattern (36 bp):
GCCTTCAAGACTAATATGTCTATAACTTACCTATAT
Found at i:673108 original size:62 final size:62
Alignment explanation
Indices: 673042--673310 Score: 475
Period size: 62 Copynumber: 4.3 Consensus size: 62
673032 TCTCGCTAGG
*
673042 ACTAGCTTGTCTCTATCTTACCTATAGGCTTCTAGGACTAGCTTGTACAATTCCTTACCAGA
1 ACTAGCTTGTCTATATCTTACCTATAGGCTTCTAGGACTAGCTTGTACAATTCCTTACCAGA
*
673104 ACTAGCTTGTCTCTATCTTACCTATAGGCTTCTAGGACTAGCTTGTACAATTCCTTACCAGA
1 ACTAGCTTGTCTATATCTTACCTATAGGCTTCTAGGACTAGCTTGTACAATTCCTTACCAGA
* *
673166 ACTAGCTTGTCTATATCTTACCTATTGGCTTCTAGGACTAGCTTGTACAATTCCTTGCCAGA
1 ACTAGCTTGTCTATATCTTACCTATAGGCTTCTAGGACTAGCTTGTACAATTCCTTACCAGA
* * *
673228 ACTAGCTTGTCTATATCTTACCTATAGGCTTCTAGGACTAGCTTGTACAACTCTTTGCCAGA
1 ACTAGCTTGTCTATATCTTACCTATAGGCTTCTAGGACTAGCTTGTACAATTCCTTACCAGA
673290 ACTAGCTTGTCTATATCTTAC
1 ACTAGCTTGTCTATATCTTAC
673311 AATAATAATT
Statistics
Matches: 201, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 201 1.00
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (62 bp):
ACTAGCTTGTCTATATCTTACCTATAGGCTTCTAGGACTAGCTTGTACAATTCCTTACCAGA
Found at i:675752 original size:164 final size:164
Alignment explanation
Indices: 675481--675810 Score: 615
Period size: 164 Copynumber: 2.0 Consensus size: 164
675471 TGGAGAGCTC
* * *
675481 CAACAGACTTGTCACTGTATTCTGCCAAATCTATAACAGTTTTGAATAAGTGCTTAAGTTTCATG
1 CAACAGACTTGTCACTGTATTCTGCCAAATCTACAACAGTTTTAAATAAGAGCTTAAGTTTCATG
675546 TATCACTGATTGTTCGAAACTCATGTACCCCTATGCATTGTACTGGTACTTGTACAAAATGAAAT
66 TATCACTGATTGTTCGAAACTCATGTACCCCTATGCATTGTACTGGTACTTGTACAAAATGAAAT
675611 TTTCATAAAATAATTCTTTATTCTTGTATAATTT
131 TTTCATAAAATAATTCTTTATTCTTGTATAATTT
*
675645 CAACAGACTTGTCACTGTATTCTGCCAAATCTACAACAGTTTTAAATACGAGCTTAAGTTTCATG
1 CAACAGACTTGTCACTGTATTCTGCCAAATCTACAACAGTTTTAAATAAGAGCTTAAGTTTCATG
675710 TATCACTGATTGTTCGAAACTCATGTACCCCTATGCATTGTACTGGTACTTGTACAAAATGAAAT
66 TATCACTGATTGTTCGAAACTCATGTACCCCTATGCATTGTACTGGTACTTGTACAAAATGAAAT
*
675775 TTTCATAAAATAGTTCTTTATTCTTGTATAATTT
131 TTTCATAAAATAATTCTTTATTCTTGTATAATTT
675809 CA
1 CA
675811 TTAAATCAAA
Statistics
Matches: 161, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
164 161 1.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (164 bp):
CAACAGACTTGTCACTGTATTCTGCCAAATCTACAACAGTTTTAAATAAGAGCTTAAGTTTCATG
TATCACTGATTGTTCGAAACTCATGTACCCCTATGCATTGTACTGGTACTTGTACAAAATGAAAT
TTTCATAAAATAATTCTTTATTCTTGTATAATTT
Found at i:676596 original size:15 final size:15
Alignment explanation
Indices: 676573--676604 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
676563 TGATTACATG
676573 TACCCGGCATCTGGA
1 TACCCGGCATCTGGA
*
676588 TACCTGGCATCTGGA
1 TACCCGGCATCTGGA
676603 TA
1 TA
676605 ACTGAGGTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (15 bp):
TACCCGGCATCTGGA
Found at i:682881 original size:21 final size:21
Alignment explanation
Indices: 682857--682920 Score: 119
Period size: 21 Copynumber: 3.0 Consensus size: 21
682847 TAAGGTAAGA
*
682857 AATAGGAGTTAGATGAAGGCC
1 AATAGGAGTTAGATTAAGGCC
682878 AATAGGAGTTAGATTAAGGCC
1 AATAGGAGTTAGATTAAGGCC
682899 AATAGGAGTTAGATTAAGGCC
1 AATAGGAGTTAGATTAAGGCC
682920 A
1 A
682921 TTAAACATTT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.39, C:0.09, G:0.30, T:0.22
Consensus pattern (21 bp):
AATAGGAGTTAGATTAAGGCC
Found at i:685856 original size:47 final size:47
Alignment explanation
Indices: 685787--685882 Score: 147
Period size: 47 Copynumber: 2.0 Consensus size: 47
685777 CCAGCTGTAG
*
685787 GGTCATCATAACATCTCAAGGTTACGACCTTAGGTAGGTGACATCAA
1 GGTCATCATAACATCCCAAGGTTACGACCTTAGGTAGGTGACATCAA
* * * *
685834 GGTCATCATTACATCCCCAGGTTATGACCTTAGGTAGGTGGCATCAA
1 GGTCATCATAACATCCCAAGGTTACGACCTTAGGTAGGTGACATCAA
685881 GG
1 GG
685883 CCATTACATC
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (47 bp):
GGTCATCATAACATCCCAAGGTTACGACCTTAGGTAGGTGACATCAA
Found at i:685913 original size:44 final size:46
Alignment explanation
Indices: 685805--685892 Score: 135
Period size: 47 Copynumber: 1.9 Consensus size: 46
685795 TAACATCTCA
*
685805 AGGTTACGACCTTAGGTAGGTGACATCAAGGTCATCATTACATCCCC
1 AGGTTATGACCTTAGGTAGGTGACATCAAGGTCA-CATTACATCCCC
*
685852 AGGTTATGACCTTAGGTAGGTGGCATCAAGG-C-CATTACATC
1 AGGTTATGACCTTAGGTAGGTGACATCAAGGTCACATTACATC
685893 TGTCGGTTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
44 9 0.23
46 1 0.03
47 29 0.74
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (46 bp):
AGGTTATGACCTTAGGTAGGTGACATCAAGGTCACATTACATCCCC
Found at i:686871 original size:37 final size:37
Alignment explanation
Indices: 686803--686874 Score: 99
Period size: 37 Copynumber: 1.9 Consensus size: 37
686793 TTATCTTGAT
* * *
686803 AATTAGCCTATGCATCTTTAATGACAAATGCTATAAG
1 AATTAGCCTATACATCGTTAAAGACAAATGCTATAAG
* *
686840 AATTGGCCTATACATCGTTAAAGACACATGCTATA
1 AATTAGCCTATACATCGTTAAAGACAAATGCTATA
686875 CATGTGCTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.31
Consensus pattern (37 bp):
AATTAGCCTATACATCGTTAAAGACAAATGCTATAAG
Found at i:695157 original size:18 final size:18
Alignment explanation
Indices: 695112--695161 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
695102 TGTACAATCA
*
695112 CTTTATTTAGCTACATAG
1 CTTTATTTACCTACATAG
* *
695130 CTTGCA-TTACCTACATAT
1 CTT-TATTTACCTACATAG
695148 CTTTATTTACCTAC
1 CTTTATTTACCTAC
695162 CTTAAGTAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
17 1 0.04
18 24 0.92
19 1 0.04
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (18 bp):
CTTTATTTACCTACATAG
Found at i:696934 original size:5 final size:5
Alignment explanation
Indices: 696924--696962 Score: 60
Period size: 5 Copynumber: 7.8 Consensus size: 5
696914 CTTCAAATCT
* *
696924 CATAC CATAC CATAG CATAG CATAC CATAC CATAC CATA
1 CATAC CATAC CATAC CATAC CATAC CATAC CATAC CATA
696963 ACTATCTCTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.41, C:0.33, G:0.05, T:0.21
Consensus pattern (5 bp):
CATAC
Found at i:697004 original size:21 final size:21
Alignment explanation
Indices: 696980--697059 Score: 133
Period size: 21 Copynumber: 3.8 Consensus size: 21
696970 CTTTTAAATT
696980 TCTCATAGCATAGCATACAAA
1 TCTCATAGCATAGCATACAAA
697001 TCTCATAGCATAGCATACAAA
1 TCTCATAGCATAGCATACAAA
697022 TCTCATAGCATAGCATACAAA
1 TCTCATAGCATAGCATACAAA
* * *
697043 TCCCATACCATATCATA
1 TCTCATAGCATAGCATA
697060 GCATAAAATT
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 56 1.00
ACGTcount: A:0.41, C:0.26, G:0.07, T:0.25
Consensus pattern (21 bp):
TCTCATAGCATAGCATACAAA
Found at i:697054 original size:26 final size:24
Alignment explanation
Indices: 696983--697068 Score: 96
Period size: 21 Copynumber: 3.8 Consensus size: 24
696973 TTAAATTTCT
696983 CATAGCATAGCATACAAAT-C-T-
1 CATAGCATAGCATACAAATCCATA
697004 CATAGCATAGCATACAAAT-C-T-
1 CATAGCATAGCATACAAATCCATA
697025 CATAGCATAGCATACAAATCCCATA
1 CATAGCATAGCATACAAAT-CCATA
*
697050 CCATATCATAGCATA-AAAT
1 -CATAGCATAGCATACAAAT
697069 TGTAAAAGAT
Statistics
Matches: 59, Mismatches: 1, Indels: 6
0.89 0.02 0.09
Matches are distributed among these distances:
21 40 0.68
23 1 0.02
24 1 0.02
25 4 0.07
26 13 0.22
ACGTcount: A:0.44, C:0.24, G:0.08, T:0.23
Consensus pattern (24 bp):
CATAGCATAGCATACAAATCCATA
Found at i:698428 original size:2 final size:2
Alignment explanation
Indices: 698421--698459 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
698411 AGACCAGATC
698421 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
698460 TAAAGGGGGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:704354 original size:2 final size:2
Alignment explanation
Indices: 704347--704399 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
704337 CCCATTCAAC
704347 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
704389 AG AG AG AG AG A
1 AG AG AG AG AG A
704400 AAGGGTAGGG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:704462 original size:2 final size:2
Alignment explanation
Indices: 704455--704482 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
704445 AGGAGGGAGG
704455 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
704483 AAGGTTAGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:705428 original size:28 final size:28
Alignment explanation
Indices: 705397--706060 Score: 468
Period size: 28 Copynumber: 24.5 Consensus size: 28
705387 TACACTGTTT
* *
705397 GACAATAAGATGTACCTGTACACAATCA
1 GACAATGAGTTGTACCTGTACACAATCA
*
705425 GACAGTGAGTTGTACCTGTACACAATCA
1 GACAATGAGTTGTACCTGTACACAATCA
705453 GACAATGAGTTGTACCTGTACACAATCA
1 GACAATGAGTTGTACCTGTACACAATCA
*
705481 GACAATGAGTTGTACCTGTACACTATCA
1 GACAATGAGTTGTACCTGTACACAATCA
*
705509 GACAATGAGTTGTACCTGTACACTATCA
1 GACAATGAGTTGTACCTGTACACAATCA
*
705537 GACAATGAGTTGTACATGTACAC--T--
1 GACAATGAGTTGTACCTGTACACAATCA
* * * *
705561 -AC--TTACTTGTACACTATCAGACAAT--
1 GACAATGAGTTGTAC-CTGT-ACACAATCA
*
705586 G------AGTTGTACTTGTACACAATCA
1 GACAATGAGTTGTACCTGTACACAATCA
*
705608 GACAATGAGTTGTACTTGTACACAATCA
1 GACAATGAGTTGTACCTGTACACAATCA
* *
705636 GACAATGAGTTGTACTTGTACACTATCA
1 GACAATGAGTTGTACCTGTACACAATCA
* * *
705664 GATAATGAGTTGTATCTGTACACTATCA
1 GACAATGAGTTGTACCTGTACACAATCA
* *
705692 GACAAT-A-----A--TGTGCACTATCA
1 GACAATGAGTTGTACCTGTACACAATCA
* *
705712 GACAATGAGTTGTACTTGTACACTATCA
1 GACAATGAGTTGTACCTGTACACAATCA
* * *
705740 AACGATGAGTTGTACCTGTACACTATCA
1 GACAATGAGTTGTACCTGTACACAATCA
* * *
705768 GACAATGAGTTGTGCATGTACACTATCA
1 GACAATGAGTTGTACCTGTACACAATCA
*
705796 -A-AACTGAGTTG-AGCATGTACAC--T--
1 GACAA-TGAGTTGTA-CCTGTACACAATCA
* * * * * *
705819 ---ATTTACTTGTACACTATCAAAAATGAGTTGTGCA
1 GACAATGAGTTGTAC-CTGT-ACACA--A----T-CA
* *
705853 TGTACACT-A-AT-TACCTGTACACAATCA
1 -G-ACAATGAGTTGTACCTGTACACAATCA
* *
705880 GACAATGAGTTGTACTTGTACACTATCA
1 GACAATGAGTTGTACCTGTACACAATCA
* *
705908 GACAATGTGTTGTATCTGTACACAATCA
1 GACAATGAGTTGTACCTGTACACAATCA
*
705936 GACAATGAGTTGTACCTATACA-ATATCA
1 GACAATGAGTTGTACCTGTACACA-ATCA
* *
705964 GACAATGAGTTATACCTGTACACTATCA
1 GACAATGAGTTGTACCTGTACACAATCA
* * * *
705992 AACGATGAGTTGTACTTGTACACTATCTA
1 GACAATGAGTTGTACCTGTACACAATC-A
* *
706021 -ACGATGAGTTGTACTTGTACACAATCA
1 GACAATGAGTTGTACCTGTACACAATCA
706048 GACAATGAGTTGT
1 GACAATGAGTTGT
706061 NGCTGTCTAT
Statistics
Matches: 525, Mismatches: 62, Indels: 98
0.77 0.09 0.14
Matches are distributed among these distances:
20 23 0.04
21 17 0.03
22 15 0.03
23 7 0.01
25 6 0.01
26 6 0.01
27 23 0.04
28 412 0.78
29 1 0.00
31 1 0.00
32 1 0.00
34 3 0.01
35 3 0.01
36 3 0.01
37 1 0.00
38 1 0.00
39 2 0.00
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (28 bp):
GACAATGAGTTGTACCTGTACACAATCA
Found at i:705584 original size:99 final size:99
Alignment explanation
Indices: 705469--705660 Score: 330
Period size: 99 Copynumber: 1.9 Consensus size: 99
705459 GAGTTGTACC
* *
705469 TGTACACAATCAGACAATGAGTTGTACCTGTACACTATCAGACAATGAGTTGTACCTGTACACTA
1 TGTACACAATCAGACAATGAGTTGTACCTGTACACAATCAGACAATGAGTTGTACCTGTACACAA
705534 TCAGACAATGAGTTGTACATGTACACTACTTACT
66 TCAGACAATGAGTTGTACATGTACACTACTTACT
* * *
705568 TGTACACTATCAGACAATGAGTTGTACTTGTACACAATCAGACAATGAGTTGTACTTGTACACAA
1 TGTACACAATCAGACAATGAGTTGTACCTGTACACAATCAGACAATGAGTTGTACCTGTACACAA
*
705633 TCAGACAATGAGTTGTACTTGTACACTA
66 TCAGACAATGAGTTGTACATGTACACTA
705661 TCAGATAATG
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
99 87 1.00
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.30
Consensus pattern (99 bp):
TGTACACAATCAGACAATGAGTTGTACCTGTACACAATCAGACAATGAGTTGTACCTGTACACAA
TCAGACAATGAGTTGTACATGTACACTACTTACT
Found at i:705748 original size:104 final size:104
Alignment explanation
Indices: 705604--705795 Score: 314
Period size: 104 Copynumber: 1.8 Consensus size: 104
705594 CTTGTACACA
* * *
705604 ATCAGACAATGAGTTGTACTTGTACACAATCAGACAATGAGTTGTACTTGTACACTATCAGATAA
1 ATCAGACAATGAGTTGTACTTGTACACAATCAAACAATGAGTTGTACCTGTACACTATCAGACAA
*
705669 TGAGTTGTATC-TGTACACTATCAGACAATAATGTGCACT
66 TGAGTTGT-GCATGTACACTATCAGACAATAATGTGCACT
* *
705708 ATCAGACAATGAGTTGTACTTGTACACTATCAAACGATGAGTTGTACCTGTACACTATCAGACAA
1 ATCAGACAATGAGTTGTACTTGTACACAATCAAACAATGAGTTGTACCTGTACACTATCAGACAA
705773 TGAGTTGTGCATGTACACTATCA
66 TGAGTTGTGCATGTACACTATCA
705796 AAACTGAGTT
Statistics
Matches: 81, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
103 1 0.01
104 80 0.99
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (104 bp):
ATCAGACAATGAGTTGTACTTGTACACAATCAAACAATGAGTTGTACCTGTACACTATCAGACAA
TGAGTTGTGCATGTACACTATCAGACAATAATGTGCACT
Found at i:705846 original size:42 final size:42
Alignment explanation
Indices: 705784--705905 Score: 156
Period size: 42 Copynumber: 2.9 Consensus size: 42
705774 GAGTTGTGCA
* *
705784 TGTACACTATCAAAACTGAGTTGAGCATGTACACTATTTACT
1 TGTACACTATCAAAAATGAGTTGAGCATGTACACTATTTACC
* *
705826 TGTACACTATCAAAAATGAGTTGTGCATGTACACTAATTACC
1 TGTACACTATCAAAAATGAGTTGAGCATGTACACTATTTACC
* * *
705868 TGTACACAATCAGACAATGAGTTGTA-CTTGTACACTAT
1 TGTACACTATCA-AAAATGAGTTG-AGCATGTACACTAT
705906 CAGACAATGT
Statistics
Matches: 69, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
42 49 0.71
43 20 0.29
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (42 bp):
TGTACACTATCAAAAATGAGTTGAGCATGTACACTATTTACC
Found at i:708177 original size:21 final size:21
Alignment explanation
Indices: 708162--708282 Score: 188
Period size: 21 Copynumber: 5.8 Consensus size: 21
708152 TCCGTGCAAG
708162 AAACGAACCGTACCGTTCACA
1 AAACGAACCGTACCGTTCACA
*
708183 AAACGAAACGTACCGTTCACA
1 AAACGAACCGTACCGTTCACA
* *
708204 AAGCGTACCGTACCGTTCACA
1 AAACGAACCGTACCGTTCACA
*
708225 AAACGAAACGTACCGTTCACA
1 AAACGAACCGTACCGTTCACA
*
708246 AAGCGAACCGTACCGTTCACA
1 AAACGAACCGTACCGTTCACA
*
708267 AAACGAACCTTACCGT
1 AAACGAACCGTACCGT
708283 GCAAAAAGCG
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 89 1.00
ACGTcount: A:0.37, C:0.31, G:0.16, T:0.16
Consensus pattern (21 bp):
AAACGAACCGTACCGTTCACA
Found at i:708227 original size:42 final size:42
Alignment explanation
Indices: 708168--708293 Score: 207
Period size: 42 Copynumber: 3.0 Consensus size: 42
708158 CAAGAAACGA
708168 ACCGTACCGTTCACAAAACGAAACGTACCGTTCACAAAGCGT
1 ACCGTACCGTTCACAAAACGAAACGTACCGTTCACAAAGCGT
*
708210 ACCGTACCGTTCACAAAACGAAACGTACCGTTCACAAAGCGA
1 ACCGTACCGTTCACAAAACGAAACGTACCGTTCACAAAGCGT
* * * *
708252 ACCGTACCGTTCACAAAACGAACCTTACCGTGCAAAAAGCGT
1 ACCGTACCGTTCACAAAACGAAACGTACCGTTCACAAAGCGT
708294 GCAAGATAAT
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 78 1.00
ACGTcount: A:0.37, C:0.31, G:0.17, T:0.16
Consensus pattern (42 bp):
ACCGTACCGTTCACAAAACGAAACGTACCGTTCACAAAGCGT
Found at i:708243 original size:63 final size:63
Alignment explanation
Indices: 708144--708286 Score: 198
Period size: 63 Copynumber: 2.3 Consensus size: 63
708134 TAAAACGAAC
* * *
708144 CGTACCGTTCCGTGCAAGAAACGAACCGTACCGTTCACAAAACGAAACGTACCGTTCACAAAG
1 CGTACCGTACCGTGCAAGAAACGAAACGTACCGTTCACAAAACGAAACGTACCGTTCACAAAA
* * *
708207 CGTACCGTACCGTTCACA-AAACGAAACGTACCGTTCACAAAGCGAACCGTACCGTTCACAAAA
1 CGTACCGTACCGTGCA-AGAAACGAAACGTACCGTTCACAAAACGAAACGTACCGTTCACAAAA
* *
708270 CGAACCTTACCGTGCAA
1 CGTACCGTACCGTGCAA
708287 AAAGCGTGCA
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
62 1 0.01
63 68 0.97
64 1 0.01
ACGTcount: A:0.35, C:0.31, G:0.17, T:0.16
Consensus pattern (63 bp):
CGTACCGTACCGTGCAAGAAACGAAACGTACCGTTCACAAAACGAAACGTACCGTTCACAAAA
Found at i:708737 original size:15 final size:15
Alignment explanation
Indices: 708714--708751 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
708704 TCAGGAGAGG
* *
708714 GAGAAAGATGACTGA
1 GAGAGAGATGAATGA
708729 GAGAGAGATGAATGA
1 GAGAGAGATGAATGA
708744 GAGAGAGA
1 GAGAGAGA
708752 AACAGACAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.47, C:0.03, G:0.39, T:0.11
Consensus pattern (15 bp):
GAGAGAGATGAATGA
Found at i:710545 original size:4 final size:4
Alignment explanation
Indices: 710536--710611 Score: 91
Period size: 4 Copynumber: 19.0 Consensus size: 4
710526 GATAATTCAG
* * * *
710536 TAAA TAAA TAAA TGAA TAAA TAAA TAAA TAAA TAAA -AAA GAGCA TAAG
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TA-AA TAAA
*
710584 TTAA TAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA
710612 AAGATGTATA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
3 3 0.05
4 56 0.92
5 2 0.03
ACGTcount: A:0.70, C:0.01, G:0.05, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:710546 original size:16 final size:16
Alignment explanation
Indices: 710522--710611 Score: 67
Period size: 16 Copynumber: 5.6 Consensus size: 16
710512 TTAACCGATC
* * *
710522 AATAGATAATTCAGTA
1 AATAAATAAATCAATA
*
710538 AATAAATAAATGAATA
1 AATAAATAAATCAATA
*
710554 AATAAATAAATAAATA
1 AATAAATAAATCAATA
* * *
710570 AA-AAAGAGCAT-AAGTT
1 AATAAATA-AATCAA-TA
*
710586 AATAAATAAATAAATA
1 AATAAATAAATCAATA
710602 AATAAATAAA
1 AATAAATAAA
710612 AAGATGTATA
Statistics
Matches: 59, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
15 6 0.10
16 47 0.80
17 6 0.10
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.24
Consensus pattern (16 bp):
AATAAATAAATCAATA
Found at i:714931 original size:4 final size:4
Alignment explanation
Indices: 714922--714956 Score: 52
Period size: 4 Copynumber: 8.8 Consensus size: 4
714912 TTTCCTCTGG
* *
714922 GTCC GTCC GTCC GTCC GTCT GTCC TTCC GTCC GTC
1 GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTCC GTC
714957 TGTCTGTCTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.00, C:0.46, G:0.23, T:0.31
Consensus pattern (4 bp):
GTCC
Found at i:714950 original size:16 final size:16
Alignment explanation
Indices: 714926--714976 Score: 66
Period size: 16 Copynumber: 3.2 Consensus size: 16
714916 CTCTGGGTCC
714926 GTCCGTCCGTCCGTCT
1 GTCCGTCCGTCCGTCT
*
714942 GTCCTTCCGTCCGTCT
1 GTCCGTCCGTCCGTCT
* **
714958 GTCTGTCTATCCGTCT
1 GTCCGTCCGTCCGTCT
714974 GTC
1 GTC
714977 TGTCGCACTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.02, C:0.39, G:0.22, T:0.37
Consensus pattern (16 bp):
GTCCGTCCGTCCGTCT
Found at i:714970 original size:20 final size:20
Alignment explanation
Indices: 714922--714980 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
714912 TTTCCTCTGG
* *
714922 GTCCGTCCGTCCGTCCGTCT
1 GTCCTTCCGTCCGTCTGTCT
714942 GTCCTTCCGTCCGTCTGTCT
1 GTCCTTCCGTCCGTCTGTCT
*
714962 GT-CTATCCGTCTGTCTGTC
1 GTCCT-TCCGTCCGTCTGTC
714981 GCACTTCAGT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
19 2 0.06
20 33 0.94
ACGTcount: A:0.02, C:0.39, G:0.22, T:0.37
Consensus pattern (20 bp):
GTCCTTCCGTCCGTCTGTCT
Found at i:716046 original size:7 final size:7
Alignment explanation
Indices: 716034--716100 Score: 71
Period size: 7 Copynumber: 9.6 Consensus size: 7
716024 GAGAAGGATC
716034 ATTCGAG
1 ATTCGAG
716041 ATTCGAG
1 ATTCGAG
* *
716048 ATTCAAA
1 ATTCGAG
*
716055 ATACGAG
1 ATTCGAG
*
716062 ATTCGAA
1 ATTCGAG
*
716069 ATACGAG
1 ATTCGAG
*
716076 ATTCAAG
1 ATTCGAG
*
716083 ATTCGAA
1 ATTCGAG
716090 ATTCGAG
1 ATTCGAG
716097 ATTC
1 ATTC
716101 AATATCTAAA
Statistics
Matches: 46, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
7 46 1.00
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (7 bp):
ATTCGAG
Found at i:721830 original size:4 final size:4
Alignment explanation
Indices: 721821--721852 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
721811 TTACCCTGTG
*
721821 CGTC CGTC CGTC TGTC CGTC CGTC CGTC CGTC
1 CGTC CGTC CGTC CGTC CGTC CGTC CGTC CGTC
721853 TGTCACGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.00, C:0.47, G:0.25, T:0.28
Consensus pattern (4 bp):
CGTC
Found at i:721840 original size:16 final size:16
Alignment explanation
Indices: 721816--721848 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
721806 TGTTTTTACC
*
721816 CTGTGCGTCCGTCCGT
1 CTGTCCGTCCGTCCGT
721832 CTGTCCGTCCGTCCGT
1 CTGTCCGTCCGTCCGT
721848 C
1 C
721849 CGTCTGTCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.00, C:0.42, G:0.27, T:0.30
Consensus pattern (16 bp):
CTGTCCGTCCGTCCGT
Found at i:723305 original size:21 final size:21
Alignment explanation
Indices: 723268--723391 Score: 169
Period size: 21 Copynumber: 5.9 Consensus size: 21
723258 TTTAGCAAAG
*
723268 CGTACCGTGCA-AGAAGCGAAC
1 CGTACCGTTCACA-AAGCGAAC
* *
723289 CGTTCCGTTCACAAAGCGTAC
1 CGTACCGTTCACAAAGCGAAC
*
723310 CGTACGCTTTCACAAAGCGAAC
1 CGTAC-CGTTCACAAAGCGAAC
*
723332 CGTACCGTTCACAAAACGAAC
1 CGTACCGTTCACAAAGCGAAC
723353 CGTACCGTTCACAAAGCGAAC
1 CGTACCGTTCACAAAGCGAAC
*
723374 CGTACCGTTCAAAAAGCG
1 CGTACCGTTCACAAAGCG
723392 TAACGAACTG
Statistics
Matches: 91, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
21 71 0.78
22 20 0.22
ACGTcount: A:0.32, C:0.31, G:0.20, T:0.16
Consensus pattern (21 bp):
CGTACCGTTCACAAAGCGAAC
Found at i:723377 original size:42 final size:42
Alignment explanation
Indices: 723268--723388 Score: 165
Period size: 43 Copynumber: 2.9 Consensus size: 42
723258 TTTAGCAAAG
* * * *
723268 CGTACCGTGCA-AGAAGCGAACCGTTCCGTTCACAAAGCGTAC
1 CGTACCGTTCACA-AAGCGAACCGTACCGTTCACAAAACGAAC
*
723310 CGTACGCTTTCACAAAGCGAACCGTACCGTTCACAAAACGAAC
1 CGTAC-CGTTCACAAAGCGAACCGTACCGTTCACAAAACGAAC
723353 CGTACCGTTCACAAAGCGAACCGTACCGTTCA-AAAA
1 CGTACCGTTCACAAAGCGAACCGTACCGTTCACAAAA
723389 GCGTAACGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
41 4 0.06
42 31 0.44
43 35 0.49
44 1 0.01
ACGTcount: A:0.33, C:0.31, G:0.19, T:0.17
Consensus pattern (42 bp):
CGTACCGTTCACAAAGCGAACCGTACCGTTCACAAAACGAAC
Found at i:737401 original size:11 final size:11
Alignment explanation
Indices: 737385--737424 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
737375 TAAGCAAGTC
737385 CTTAAAGGTGG
1 CTTAAAGGTGG
*
737396 CTTAAAGGTGA
1 CTTAAAGGTGG
*
737407 CTTAAAGG-AG
1 CTTAAAGGTGG
737417 CTTAAAGG
1 CTTAAAGG
737425 CTATACAACC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
10 8 0.31
11 18 0.69
ACGTcount: A:0.35, C:0.10, G:0.30, T:0.25
Consensus pattern (11 bp):
CTTAAAGGTGG
Found at i:737543 original size:10 final size:11
Alignment explanation
Indices: 737495--737544 Score: 84
Period size: 11 Copynumber: 4.6 Consensus size: 11
737485 GTCCAAACTT
737495 CTTTAAGCCAC
1 CTTTAAGCCAC
737506 CTTTAAGCCAC
1 CTTTAAGCCAC
737517 CTTTAAGCCAC
1 CTTTAAGCCAC
*
737528 CTTTAAG-CAT
1 CTTTAAGCCAC
737538 CTTTAAG
1 CTTTAAG
737545 TGGCATTTAC
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
10 9 0.24
11 29 0.76
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (11 bp):
CTTTAAGCCAC
Found at i:737594 original size:22 final size:22
Alignment explanation
Indices: 737537--737597 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
737527 CCTTTAAGCA
* *
737537 TCTTTAAGTGGCATTTACGCTC
1 TCTTTAAGTGGCCTTTACACTC
* *
737559 TCTTTACACT-GCCTTTACACTG
1 TCTTTA-AGTGGCCTTTACACTC
737581 TCTTTAAGTGGCCTTTA
1 TCTTTAAGTGGCCTTTA
737598 AGTCAATATT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
21 2 0.06
22 28 0.88
23 2 0.06
ACGTcount: A:0.18, C:0.25, G:0.15, T:0.43
Consensus pattern (22 bp):
TCTTTAAGTGGCCTTTACACTC
Found at i:737932 original size:2 final size:2
Alignment explanation
Indices: 737927--737969 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
737917 GTGAAAAAAA
737927 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
737969 T
1 T
737970 NNNNNNNNNN
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:743456 original size:59 final size:58
Alignment explanation
Indices: 743363--743480 Score: 227
Period size: 59 Copynumber: 2.0 Consensus size: 58
743353 CACAAGTAAA
743363 ACTACAAGTTAATGATTTAAAAAAAACTGCAGAGCTAGGCATATTACAACCTTCCTTG
1 ACTACAAGTTAATGATTTAAAAAAAACTGCAGAGCTAGGCATATTACAACCTTCCTTG
743421 ANCTACAAGTTAATGATTTAAAAAAAACTGCAGAGCTAGGCATATTACAACCTTCCTTG
1 A-CTACAAGTTAATGATTTAAAAAAAACTGCAGAGCTAGGCATATTACAACCTTCCTTG
743480 A
1 A
743481 TTTCGATCCT
Statistics
Matches: 59, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
58 1 0.02
59 58 0.98
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.27
Consensus pattern (58 bp):
ACTACAAGTTAATGATTTAAAAAAAACTGCAGAGCTAGGCATATTACAACCTTCCTTG
Done.